<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:20:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306603" ref_strand="-" ref_description="SGN-E306603 [cLEY-19-C13]">
      <seq>tcagatcctagtcaaatgaagactagtgtaacagagacaagtgccccagaacttgccaaacttctttattggctcatggtggttggttatagcatccggaatattgaagtccgctttgatatggaacgggtactaggcacttctccaaagctcgctgagctgcctcctggtgaaaatatttaggcatctctggaaagtgtctaatctatagcaagcattaaaacgttgaagcaacatacatttttcatgagctttacgatggtcaatagtaaaattttatcaagcttgtacgactatctgggaggacaacagtggaaattggttttagtgcattttcttcactcactcccagccccgctccccctattattctcagtttgggagcatcattaagacgctcatacaaaggaaatgtactataaattgatgcacaatgtaacttatgtgagttaatttgattcattgccctctaaaatgtacctctctgtttatgggaatgagaaattttgtggcttagatctccaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="96" stop="1211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="408" g_stop="910" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="524" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="543"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E306603" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306603" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="408" e_stop="910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</genome_strand>
        <mrna_strand>ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352684" ref_strand="+" ref_description="SGN-E352684 [cTOS-11-I14]">
      <seq>gaatattagaagggatccagcttgatgtacttctatataacaccatttttcaagtggcagctgagaagggaagaatagatgtcatcgaactcattgttgagcacatgcacctccaaggggttctcccagatccatcaacatgcagtcatgttttcgctgcatatgtagaccatggattctataacactgccatggaagctttgcaagttttgagtgtgcgaatgattgttgaggttgagaaagatacagatgaaaaacgaactgaacttgaaaatctaattcttggtgaagactcggaagatgagccccagattcttaagacttttaaagactcgaaagaatatcttactgttgccttactgcaattaagatggtgcgccatacttggatatccagtatcttggtcaccttcagacagtcaatgggccaggagactttcaagtaattttgcttcaacaaacggtcttctgtgaaggtttcatgtttccacaggtgtgtggactcttttgatcttgcatatcacctggtatgtcaattctcagttctgatacgctaactcgtgatatattaatgatcggaatgggttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="2536" stop="1239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2236" g_stop="2169" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2168" i_stop="2061" i_length="108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2060" g_stop="1539" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="590" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E352684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2236" e_stop="2169"/>
          <exon e_start="2060" e_stop="1539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTAGAAGGGATCCAGCTTGATGTACTTCTATATAACACCATTTTTCAAGTGGCAGCTGAGAAGGTAATTAACAAATAATTCATCCACTTCTCAAGTTAAATAATTCATTACCTTTTAACGCTTGAATAGATCAGTGCTCTTTCTAACTAGGTCATGAAATTGTGTTTCCAGGGAAGAATAGATGTCATCGAACTCATTGTTGAGCACATGCACCTCCAAGGGGTTCTCCCAGATCCATCAACATGCAGTCATGTTTTCGCTGCATATGTAGACCATGGATTCTATAACACTGCCATGGAAGCTTTGCAAGTTTTGAGTGTGCGAATGATTGTTGAGGTTGAGAAAGATACAGATGAAAAACGAACTGAACTTGAAAATCTAATTCTTGGTGAAGACTCGGAAGATGAGCCCCAGATTCTTAAGACTTTTAAAGACTCGAAAGAATATCTTACTGTTGCCTTACTGCAATTAAGATGGTGCGCCATACTTGGATATCCAGTATCTTGGTCACCTTCAGACAGTCAATGGGCCAGGAGACTTTCAAGTAATTTTGCTTCAACAAACGGTCTTCTGTGAAGGTTTCATGTTTCCACAGGTGTGTGGACTCTTTTGATCTTGCATATCACCTGGTATGTCAATTCTCAGTTCTGATACGCTAACTCGTGATATATTAATGATCGGAATGGGTTAATG</genome_strand>
        <mrna_strand>GAATATTAGAAGGGATCCAGCTTGATGTACTTCTATATAACACCATTTTTCAAGTGGCAGCTGAGAAG............................................................................................................GGAAGAATAGATGTCATCGAACTCATTGTTGAGCACATGCACCTCCAAGGGGTTCTCCCAGATCCATCAACATGCAGTCATGTTTTCGCTGCATATGTAGACCATGGATTCTATAACACTGCCATGGAAGCTTTGCAAGTTTTGAGTGTGCGAATGATTGTTGAGGTTGAGAAAGATACAGATGAAAAACGAACTGAACTTGAAAATCTAATTCTTGGTGAAGACTCGGAAGATGAGCCCCAGATTCTTAAGACTTTTAAAGACTCGAAAGAATATCTTACTGTTGCCTTACTGCAATTAAGATGGTGCGCCATACTTGGATATCCAGTATCTTGGTCACCTTCAGACAGTCAATGGGCCAGGAGACTTTCAAGTAATTTTGCTTCAACAAACGGTCTTCTGTGAAGGTTTCATGTTTCCACAGGTGTGTGGACTCTTTTGATCTTGCATATCACCTGGTATGTCAATTCTCAGTTCTGATACGCTAACTCGTGATATATTAATGATCGGAATGGGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266203" ref_strand="+" ref_description="SGN-E266203 [cLEI-3-A4]">
      <seq>ttggtaatgtaaatgcaccttatgaagagggcaacatgctgtcacaagtggatgttgcgtgaaaggataaatgctatagaaatggacatgatgaggaatggcattccgcacagtcatctgtcgttgaggaatgtgttgaaagcgcttggaacagaagggatggtaaaggagctgattcaatatttacgtgctgcagagaatcggttttctcgttatgacacctatatgataacacctgtctataatacagctttacactcccttattgaggctaaagagagtaaagtggcaacacagatattcaaatcaatggtgtcttctggtgttacacctgatgctgcaacatataatatcatgattgacggctgtagcattgttggatgtttcagatctgcacttaccctgatctctatgatgttccgcactggtttcaaccctcaagcagtgactttaactggcctgttaaagatattgttgagatctgaggactttgatggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="5684" stop="1956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5384" g_stop="5251" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5250" i_stop="3316" i_length="1935">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3315" g_stop="3172" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="279" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3171" i_stop="3079" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3078" g_stop="2890" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="468" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2889" i_stop="2289" i_length="601">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2288" g_stop="2256" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="501" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E266203" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5384" e_stop="5251"/>
          <exon e_start="3315" e_stop="3172"/>
          <exon e_start="3078" e_stop="2890"/>
          <exon e_start="2288" e_stop="2256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGC-TAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTGGTAATGACTTCTCAACTAAGACAAATTTAGATATTGATTTATTTGAGTACTATTTTACTTCCTAAGCAAGTAGAGATGATGATCAGCCCAATATCTGCACCACTAATTGAATGTGTGATGTCTTTAGAGAGATGGTCATTAAGAGTCTTTTTTAACTTTGATGGTGAAATCTTTACGATGATTAAAAGAGATACTAAATGTCTTTAGAAAGATGGTCATTTAAGAGTCTTTCAGTTAAATTTGATGGTGAAATCTTTACGATGATTAAAAGAGATACTAATGAATGTTATCATTTTTGGTGATGGTGCATAAATTTATGTGTTCATCCTAGCTTTGTGATTCCCAAGTTCATAAACAGGCTGCAACTCGACATTGCCTCTATTAAAATGAGGACACTAGCAGATATTTCTCTGTATGTATCAAAATTATCCACAGCATACTTGTAAACTTCACTCCATATGACTTAAAAAGTGTTCCTGGTATATCAAACAAGTCAATTCTTGGTTCACCTGTCTGGAAGTGTTGAATGCTATAAGTAGTTTCATGACTTATCTGTCTGGAAGTGTTGAATGTTGTAAGTCGTCTCTGGGTTTATCTGTCTGGAAGTGTTGAATGCTGTAAGTAGTTTCATGACTTATCTGTCTGGAAGTGTTGAATGTTGTAAGTCGTCTCTGGGTTTATCTGTCTGGAAGTGTTGAATGCTGTAGTCTTATTTATGCATGCTTCATGATTCTTATAGCTGGAGGCTATCTATTGAGGAAGCAATGAGAGAAAAATGAACTTCTGCCTCCATCATGAACCACACTTTGGATGTACTAGCTCCGTCAACTTTTATTTGTCATGTTGCGTTTTTCGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAGATTATATTAATTCGACATTTTAACAAAAAAATTTAGATATTCAAAAACTATACGAAAAGTACTATAAATTGCAATTTTTTGCATATCAATATAATGAAAAAATACATCGTAAAATGTTAGTCAAAATTTTTATAGTTTGACTCTAAAAAAGGAAACCATGACAATTAAAAGTGGACAGAGGGAGTATATATCCTTACAGATTGCATATTGGACAGGAGCAACTACTCCTGGTTGCTGTTATGTGCACCTTTTGATTTGGCATAGCTAAATAACTTGCAAGGAAAGGTACACTTTGGGTCACTTTGCTAAAACAAATGTTGTCTGATGACTAAATTTAGTATGGTCTGAGTCACCGAACTAAAAATATTGGAGATGTAATAGTTTATTCAAGCTTATGTCTACTATGCTAATAGCTTTTTATTTTTATTTTATGTGCATTTCATAAAAGCATTTCTCTACTAATTTTTTGTTAAGTTTTTATTAAAATATTTCATACTATTGTCAAATATTGTATGTGTTTGTGTTTAAATATCTTTTCGATATGGTAAGCCTCACCCTCCTCCAAATCCATCTACACAGGAGACCAACAGTGTTTTTTTCACACTTTGCTCCCTTGGTGACTAGAAACCCCTCAATCTCATGGTTAAGATGGAAGACCCTTACCAGTGGGCTATCCGACTTTCCACCATTTAGATATTAGTTTATCATTTATTGAAACATGTGATGTAACATCTTAATATTTCACCAATTTAAGATTCAGTAATCAGTCAAGGTCTTCTTACTTAAGATTCGTAAAGCATTTTAAGTGCCACTTAATGTTTGAAGTAGTTTCTCTTTCCCTTATCAATACATCTAATGTCTGAAATTCAGTTAAAATCCTGAATTGTTTTATCAATAGCTCCTTAAGTTGCAATTTTTTTTTTCTACTGCAGGATTCTCTACAATTTTGTGCCCCAATATTTAAGGGGGCTTAAGGGCCAGTTATAATATTGATGCAATGCTTCAGTATAATATCCATGTCTTTTTACTCTTCTATATTTTCCAGTTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAGGTAATCAACCTAGGGTTCTAGTGTATAAGATCCATTTAATAGTTATATTGGTTATTTTTCATCTGCTGACTAAGTCTATTTTTTTCTTTTCAGAGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAGGTATTAGTTTAGCCTTGTTAAGCTATTCTCACTAATCTGGAAGCTGGATCATTAGAAAAATAAAAAGTAAACTTGCACAAACTTAAGCCTAACCAAGCCTTCTTTATTTTGTTAAAAGGGCTTTTCATGAAGTTGACAGTATGTGTTTTCTATCACTTATTCTGCTAACTTTTAACTATTTAGAAACTTTGCCAAGAAAATCAGTCAAATGATTTAGTAAACCTTGAAACCCAAAATCACCACAAGTCCATAACTAGTTGTGCTGCAACAATTGGGTTTGGATGATACTTCATTTAGCTGGAAGGGGCTTTCTTTGGATGAAAATAATTGTCATTGGTTGGGACAGAATGCCTTGCCACAAGTATCACTTATATTGCCTTTAGTGGTACCTTGGATTTCAACTTTTGGTGAATAAAAAGTGTTGTCTTTCTTCAGGTGAATGTACTACAAGAACTGTAGATGGCTTATCCTAATTTCATGGAAGCATAGTTATTGTTCAACAATTTATCCATCCCCCCCTTCCCCTTCCGCTGTGACTATATAGATATGCAAATGGTACCCACATATATTCCAACTGAAACTGAAATCTCTTCTGCTGTAGATATTGTTGAGATCTGAGGACTTTGATGGAGCA</genome_strand>
        <mrna_strand>TTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCGTGAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAG.............................................................................................AGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTTGAGATCTGAGGACTTTGATGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365444" ref_strand="+" ref_description="SGN-E365444 [cLPT-2-K6]">
      <seq>gcagaaaaacattaagtgcatctgttgtgaagcttttgaggtggtccttcaatgatgttatgcatgcttgtgcacaagttcaaaattgtgatttggctgaacagttgatgttacagatgcaaactcttggtttgcaaccatcagggagtacatatgatggcttcattagggcaattgctaccacaagaggctttagtgatggagtggaagtgctaaaggttatgaaagagaaaaatattaagcctcatgattcaactcttgctgttttagcagtcatgtgcagcagagagttggaactcaatctagcagaggctttcttggctgagatgtccaaaatccataatcctcgtccttataatgcttttcttgaagcatgtgatgttctggatcggcccgaacgagcagtccagatattggctaagatgaaaaggttgaatcttcagccaaatatcaggacatatgagttgctattctcactgtttggtaatgtaaatgcaccttatgaagagggcaacatgctgtcacaagtggatgttgctaaaaagataaatgctatagaaatggacatgatgaggaatggcattcaacacagtcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="7040" stop="4966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6740" g_stop="6625" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6394" g_stop="6299" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6193" g_stop="6020" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="386" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5478" g_stop="5266" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="599" r_length="213" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E365444" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6740" e_stop="6625"/>
          <exon e_start="6394" e_stop="6299"/>
          <exon e_start="6193" e_stop="6020"/>
          <exon e_start="5478" e_stop="5266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTATGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGTCCTTAGGTCCATATGACTAGGCACATATCATTGTTTTACGCAAAAATAAGCCAATAGCAATTGTCTCAACTTTCTTTCTCAAAAAAAAATTGTCTTAATTTCACAAGGTAATTTCCTGTCTGATTTTCACTAAGCTATCTCTTTTCTTTAGATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTGGTAATATATTATTAGTTTCATGGGATCTTCTTTTTTTTCTTCCAAGAGTAGTACTTGCTTTTGGTTTTCTCATTTTCACATTATGTAATTTGTCTAATTTTGCAGCTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTGGTAAGACAGTATATAATTATTTCAAAAACAACAATATATTTGAAAACATCTGATCATCACTGGTCCCATACTTAGATCAGTACAATAAGAACTGGCAAAGGTTTGACTGAGTTATGTAGGTTCCTGGATGGTTCAATAAGCCAATCAGCTTGTCCAGACTTTTCTTTTTTCTTGCAAGTCAAACCTATCCTTCTAAGCATATTCTTGCTTCTTTAGATCTTGATATTACCACCGTATATTTTGCTCTCTCATGAGATGTTGTAAGGAATATGAGGATTTTGAGCTAGCTCTCATCAAAAGAGTTTTACGCGTCAAGCTAAAAAGTTGCAACTACCCTCTGACTTAAATCATTTTAGGATTTAAATATGGAGAACACTCTCTTTTTGTAACTAGGCCAAGATATATTGCTTTATGATCATTTAACTTCTGCAATATTCAGCATCGTTGTTTTTTCAGCGTCTTTCGATAGAATTGCCCATCTTGTCGATCGTATTATACTGATATGTCCAGTTTGTGATTCTTGTACATATTAATATTGTAGGATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTG</genome_strand>
        <mrna_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG......................................................................................................................................................................................................................................ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGATGGAGTGGAAGTG.........................................................................................................CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGCTGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGCCCGAACGAGCAGTCCAGATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAAGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCAACACAGTCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736406" ref_strand="+" ref_description="SGN-E736406 [LC05CF10]">
      <seq>cgtttaaagcaaaaaaccagagtcgccggaaacactgtcctcgcgggcgggcctagctgtagtcgcagtggtcggactgattacaatttccggactaaccgttctggaaaatttcttcgtgctgctagtactatgaactcatcgaaccgaaagttttaagttatttcacaggaagcattgagaagatgcctaaacttatatcaaaggttcgtgccagttcgatattgcaaagattttcaaaattaaatgctattcgaaatggaggaaaggaagctggaggctacagccaagctatgagaactcttactacctcaaatgggcatgtcggggagccggtttcaagattagggcaaaaacaaattgtcgatgcacttgtcttgggagagagaagaagagctgttagtctcctgtatgagtttagtcttggaaacaacaaattgagtgctgatgattttgcttctatactgcaaagttgtgcaagactgcctgatccattatttgtgatggaaacttggaagatcatggaggagaaggaaatcaacattagtgacaagtgttatgctcttgccgttcgagcactctgtaaagggggttacttaaaggaggcactcagtttgatgagtatcatggcagaaaacacaaattgttattctatgttgccaatttataacaacttcctagctgcttgttatgaaacacaaacaatagattatgctaatgaatgtatggatttgatggagcatcagatggtggggaaagaatgagataacatatgctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="10435" stop="7660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10140" g_stop="9942" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9941" i_stop="9854" i_length="88">
            <donor d_prob="0.227" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9853" g_stop="9793" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="260" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9792" i_stop="9639" i_length="154">
            <donor d_prob="0.394" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9638" g_stop="9581" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="318" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9580" i_stop="9317" i_length="264">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9316" g_stop="9138" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="497" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9137" i_stop="8825" i_length="313">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8824" g_stop="8717" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="605" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8716" i_stop="8134" i_length="583">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8133" g_stop="7960" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="780" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E736406" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10140" e_stop="9942"/>
          <exon e_start="9853" e_stop="9793"/>
          <exon e_start="9638" e_stop="9581"/>
          <exon e_start="9316" e_stop="9138"/>
          <exon e_start="8824" e_stop="8717"/>
          <exon e_start="8133" e_stop="7960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAAGCAAAAAACCAGAGTCGCCGGAAACACTGTCCTCGCGGGCGGGCCTAGCTGTAGTCGCAGTGGTCGGACTGATTACAATTTCCGGACTAACCGTTCTGGAAAATTTCTTCGTGCTGCTAGTACTATGAACTCATCGAACCGAAAGTTTTAAGTTATTTCACAGGAAGCATTGAGAAGATGCCTAAACTTATGTAAGTACATTTACTATATTATGTGGAAATCAGTCAATTGATTGCACGTCTCTCGTATATATCACCTTTTTATGTGTCTTCTTACCAGATCAAAGGTTCGTGCCAGTTCGATATTGCAAAGATTTTCAAAATTAAATGCTATTCGAAATGTAAGTAATGTGTTACTCAGAAGGAAAATTATGGCATAAAATTGAACTTTTTGGCGTTAAAATTGTTTTTTTTTTTGCTTGAAAGTTTGTTTTGCTACAGTTTGTTGAATTAGATGAAGCACGGAATTCTATTTAATTGATTTTTACTTTGTAGGGAGGAAAGGAAGCTGGAGGCTACAGCCAAGCTATGAGAACTCTTACTACCTCAAATGGTATGAATCATCAACGTGTTAATATTTGTGTATGTGAATATCCATATATATTTGGTACACTGGACTGGTTTATCTATGTAGACATGCAAAGAGGATATGTTTAGGAATCGCTATATTAGCTTGCATAACTAGTCTGCGAACTAAACTGTCCCTTCCTACTGTAAGTTGTTTTTGTTATTAGGTGTCGTACTTAACTGTTAATTTGCTTAGGTCAGATAGGAAATGAATATTGAGGAGGGAAAATTTAATCTTTTGGTTGTTTAGGGCATGTCGGGGAGCCGGTTTCAAGATTAGGGCAAAAACAAATTGTCGATGCACTTGTCTTGGGAGAGAGAAGAAGAGCTGTTAGTCTCCTGTATGAGTTTAGTCTTGGAAACAACAAATTGAGTGCTGATGATTTTGCTTCTATACTGCAAAGTTGTGCAAGACTGCCTGATCCATTAGTAAGTATTCAAATAGAAATCCATTTTCTTTCTTTTCATATGACATGTAACTTTGTGCCAGAGAAAAGTTATATGATGAGCACATATTGCTAATTAATTGCCACTGATTGTTAAATGCTCAATCAATTATACAATGTGTGCTACTTAGATACCCTAAGAGTCATTGGCACATTCAGTGTCAACTACCTTATAGTCTCTTACATTTACTAAGAACAAATAAGCTGACTTCTGAAATGTCATTATAGCATGTATTTTTGTCTCCATCTGAATGATAACTTGAAGTTTGACACTTCTTCTTTTTTCCTGGCTGTAGTTTGTGATGGAAACTTGGAAGATCATGGAGGAGAAGGAAATCAACATTAGTGACAAGTGTTATGCTCTTGCCGTTCGAGCACTCTGTAAAGGGGGTTACTTAAAGGAGGTACCAGAATCCTGGTCTGATTTCCAGATTAGAATAGAGTGGCAGCTAGAAGAACTTATAGAATACTTGTTAAATTTCAAGTCTCAATGGTATTCTTTTTACTTGTCAGAAAGATGAATGTTCATGAGTTGCCAAACCTTTGATTGGACAACTAACATCTAAGTGCTTGATGTTAATACTAAAATAAGAGTCTCCTCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTGTGCGCACCAAAAGGGTAGCGACTGCGGGTTTCCCTTGTCGTCAAAAAAATACTAAAATAAGAGGATATTTGTTATTTGCTGCAAGGTATAGTTGACTTATCACATGGTTGGTTAGGTGACTTCTTGTTGATTTTTTTGGAAGTCCAAAACAGATCCTGTTAAATGATCAATTACCCATTATACTACTTGTTGAGAAACTATATTGCCTTTTCCTTGTCGTCTGTCATTTATATGGTTCTGTCTGATATATCTATATCAAGACACTTATTTCAATACTTCCTTTTTGTAAATTTTGTTCTTAAGTTTCATATTTAATGTTTTTCTTTCTTTATTTTTATTCAGGCACTCAGTTTGATGAGTATCATGGCAGAAAACACAAATTGTTATTCTATGTTGCCAATTTATAACAACTTCCTAGCTGCTTGTTATGAAACACAAACAATAGATTATGCTAATGAATGTATGGATTTGATGGAGCATCAGATGGT-GGGAAAGAATGAGATAACATATGCTCAG</genome_strand>
        <mrna_strand>CGTTTAAAGCAAAAAACCAGAGTCGCCGGAAACACTGTCCTCGCGGGCGGGCCTAGCTGTAGTCGCAGTGGTCGGACTGATTACAATTTCCGGACTAACCGTTCTGGAAAATTTCTTCGTGCTGCTAGTACTATGAACTCATCGAACCGAAAGTTTTAAGTTATTTCACAGGAAGCATTGAGAAGATGCCTAAACTTAT........................................................................................ATCAAAGGTTCGTGCCAGTTCGATATTGCAAAGATTTTCAAAATTAAATGCTATTCGAAAT..........................................................................................................................................................GGAGGAAAGGAAGCTGGAGGCTACAGCCAAGCTATGAGAACTCTTACTACCTCAAATG........................................................................................................................................................................................................................................................................GGCATGTCGGGGAGCCGGTTTCAAGATTAGGGCAAAAACAAATTGTCGATGCACTTGTCTTGGGAGAGAGAAGAAGAGCTGTTAGTCTCCTGTATGAGTTTAGTCTTGGAAACAACAAATTGAGTGCTGATGATTTTGCTTCTATACTGCAAAGTTGTGCAAGACTGCCTGATCCATTA.........................................................................................................................................................................................................................................................................................................................TTTGTGATGGAAACTTGGAAGATCATGGAGGAGAAGGAAATCAACATTAGTGACAAGTGTTATGCTCTTGCCGTTCGAGCACTCTGTAAAGGGGGTTACTTAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCAGTTTGATGAGTATCATGGCAGAAAACACAAATTGTTATTCTATGTTGCCAATTTATAACAACTTCCTAGCTGCTTGTTATGAAACACAAACAATAGATTATGCTAATGAATGTATGGATTTGATGGAGCATCAGATGGTGGGGAAAGAATGAGATAACATATGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737964" ref_strand="+" ref_description="SGN-E737964 [LC11DD11]">
      <seq>cagtttgttgcaaggcccatattttcttccgatagttttaacgctgataagcaaaaaatggagagatttctccatcccgggcgtttttcagtagcttcagtatatgctcctatttcatttcctccccttcctttaattgccctgaagattaaagacgatgcaactcctgccactgttgctgccattggctctttgagaagtattgacccagataggattattctaaagaaaattattttaaccggttaccctcaacgagtatcaaaacagaaagcgacggtaagatacatgtttcataacccagaggatgtcagatggttcaagcctgttgaagtttggtcaaagtgtggtcgtcgtggtcgcatcaaggaacctgttggtacacatggggcaatgaagtgcatcttgaatggagtcctccaacagcatgacacgttatgcatgagtttgtttaaacgcacataccccaggtggccggaaaagtggttcccgatgacagatgcttaagagaaaggtcaagtggtggcccaggtttatggtttctcccaagtgtgaagggagaagaaatcacatttgctgcacatgggaatgaagctctggttcagaatgagttactattcaagttttgtacgagggaaattttttactttgtttacttttctttctccccaaaggtttcttcagaaaccagtttatagtgtataatatatggtagctcattttttcgtgccacaacacaatcttgtatcacttataaattagttcctaaccgcacaatgatttttttttttttgaatcgttaacaaattttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="13699" stop="10920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13499" g_stop="13486" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13390" g_stop="13160" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="245" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12535" g_stop="12457" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="324" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12376" g_stop="12313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="388" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11644" g_stop="11217" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="817" r_length="429" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E737964" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13499" e_stop="13486"/>
          <exon e_start="13390" e_stop="13160"/>
          <exon e_start="12535" e_stop="12457"/>
          <exon e_start="12376" e_stop="12313"/>
          <exon e_start="11644" e_stop="11217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGGGTAAGATTCCTCTGTCATTTTAAAGGGGGGCTTGGATATTCTATTCCTTTGTTTATGTGGGAGGGGTCTGATTTCTGAGAATGACAGCATAATGAAGTATCGCTACTTTAGGTTGGATTGATTGATCAGCTTCGCTACCTATAACACTTGCTATAGTTGTGATTATATTTAGGTTTTTCACTGTTCTGTTTTTTCTCGGCTTTCATTTGTTTACAGCGGTAGAGATGTTTAGAGGATTATTTCTGGAACTTCTTGTTCTGAACAACTTAGACTTTCTGTTTTTTTTTTAATCAAATTTGGTCTATAGACTGAACCTACTAAGTGCCACAATATAGACTTGTTATGCTTTTTTACTAGGCATAACATAACATATAATGTGTGAACCAAAAATCTTGTTAATTGTGTATTCCAGCTGGGATCCTGGTAAAGTTAATTGGAGTATCATTCTAGTCATTCATCCTTGCATGGTAGAGAACTTTTTTGAGGATCATATAATTTGCAATATTTTATTTTAGAATTTTAGGGTTTTTTAGTCCTTAAAATGCAAAAGCTGATTGTAGAGAGTCAGTAGGTGATATTGTTAAGTTAACCTTTTGTTCACAAGATATGTCATCTATGTTGCAGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAGGTATGCAAACAATTGACTTTTCTATTTTCTTCTTTGTCATGCTCTTTTCACTTTTAACATATTTACTGGACCTTTTGTAGCCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATGGTATGTCTGAAATTTGATTTGAAGTCTTCGAGATATATGCGGAAATTTTCCACTCTTCTTCTATCCAAACATCTCCCCTCCTCCCCCCTTGAAAAGAGGAAAAAGGCTTGTCCAGATGTTAGAATTTTCCAGTGTTGTGCTCATTAGTGAGTGGTGTTATTTGACTAATCATGCATAAGGTTGTCATTTTCCCCTTATTATGTGGCCTGTGGCCAAGGAAGCCTATTGTGAGCATACATTTCCTCTGTTCACGATGCATATAATTTAGATCTACTAGAAAAACTAAAAGCTCTGCACGTTATTGGGTTCTTTGAGCACTCGACTATCTACAGCTTGTAGGTCAGCAAGCATATGATCATTTCATTGCCCTTCTACCATTTGTGGGTGCCCGAACATTTTGACCCTTTCTAGATGAATACCTGCTGTCGCATGCTCTACTAACTGGCAAAAGTACAATTGTTTTTTGAGTCTGTTGTAGGATGTATTATGTCTTTTCGATGTTCCTTGTCATGGATTTAACTTGTACATGTAGCAGCAGGCAATTTGCCTCATTTCGCCACTAATCCCACTTTTTGTAGATGGTTGCCTGTAGTATTTCTTGTAGCTGACTGGACAACGTAAACAATCTTGCATTGGTAGTGTAAACATGTTAATCTATTTTTGTGCAGGGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCTAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGA-TTTTTTTTTTTTGAATCGTTAACAAATTTTATAGCA</genome_strand>
        <mrna_strand>CAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG................................................................................CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCAAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTTTTTTGAATCGTTAACAAATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717002" ref_strand="+" ref_description="SGN-E717002 [FB18CF06]">
      <seq>cgccagtttgttgcaaggcccatattttcttccgatagttttaacgctgataagcaaaaaatggagagatttctccatcccgggcgtttttcagtagcttcagtatatgctcctatttcatttcctccccttcctttaattgccctgaagattaaagacgatgcaactcctgccactgttgctgccattggctctttgagaagtattgacccagataggattattctaaagaaaattattttaaccggttaccctcaacgagtatcaaaacagaaagcgacggtaagatacatgtttcataacccagaggatgtcagatggttcaagcctgttgaagtttggtcaaagtgtggtcgtcgtggtcgcatcaaggaacctgttggtacacatggggcaatgaagtgcatcttgaatggagtcctccaacagcatgacacgttatgcatgagtttgtttaaacgcacataccccaggtggccggaaaagtggttcccgatgacagatgcttaagagaaaggtcaagtggtggcccaggtttatggtttctcccaagtgtgaagggagaagaaatcacatttgctgcacatgggaatgaagctctggttcagaatgagttactattcaagttttgtacgagggaaattttttactttgtttacttttctttctccccaaaggtttcttcagaaaccagtttatagtgtataatatatggtagctcattttttcgtgccacaacacaatcttgtatcacttataaattagttcctaaccgcacaatgattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="13699" stop="10944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13502" g_stop="13486" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13390" g_stop="13160" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="248" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12535" g_stop="12457" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="327" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12376" g_stop="12313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="391" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11644" g_stop="11244" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="792" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E717002" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13502" e_stop="13486"/>
          <exon e_start="13390" e_stop="13160"/>
          <exon e_start="12535" e_stop="12457"/>
          <exon e_start="12376" e_stop="12313"/>
          <exon e_start="11644" e_stop="11244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGGGTAAGATTCCTCTGTCATTTTAAAGGGGGGCTTGGATATTCTATTCCTTTGTTTATGTGGGAGGGGTCTGATTTCTGAGAATGACAGCATAATGAAGTATCGCTACTTTAGGTTGGATTGATTGATCAGCTTCGCTACCTATAACACTTGCTATAGTTGTGATTATATTTAGGTTTTTCACTGTTCTGTTTTTTCTCGGCTTTCATTTGTTTACAGCGGTAGAGATGTTTAGAGGATTATTTCTGGAACTTCTTGTTCTGAACAACTTAGACTTTCTGTTTTTTTTTTAATCAAATTTGGTCTATAGACTGAACCTACTAAGTGCCACAATATAGACTTGTTATGCTTTTTTACTAGGCATAACATAACATATAATGTGTGAACCAAAAATCTTGTTAATTGTGTATTCCAGCTGGGATCCTGGTAAAGTTAATTGGAGTATCATTCTAGTCATTCATCCTTGCATGGTAGAGAACTTTTTTGAGGATCATATAATTTGCAATATTTTATTTTAGAATTTTAGGGTTTTTTAGTCCTTAAAATGCAAAAGCTGATTGTAGAGAGTCAGTAGGTGATATTGTTAAGTTAACCTTTTGTTCACAAGATATGTCATCTATGTTGCAGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAGGTATGCAAACAATTGACTTTTCTATTTTCTTCTTTGTCATGCTCTTTTCACTTTTAACATATTTACTGGACCTTTTGTAGCCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATGGTATGTCTGAAATTTGATTTGAAGTCTTCGAGATATATGCGGAAATTTTCCACTCTTCTTCTATCCAAACATCTCCCCTCCTCCCCCCTTGAAAAGAGGAAAAAGGCTTGTCCAGATGTTAGAATTTTCCAGTGTTGTGCTCATTAGTGAGTGGTGTTATTTGACTAATCATGCATAAGGTTGTCATTTTCCCCTTATTATGTGGCCTGTGGCCAAGGAAGCCTATTGTGAGCATACATTTCCTCTGTTCACGATGCATATAATTTAGATCTACTAGAAAAACTAAAAGCTCTGCACGTTATTGGGTTCTTTGAGCACTCGACTATCTACAGCTTGTAGGTCAGCAAGCATATGATCATTTCATTGCCCTTCTACCATTTGTGGGTGCCCGAACATTTTGACCCTTTCTAGATGAATACCTGCTGTCGCATGCTCTACTAACTGGCAAAAGTACAATTGTTTTTTGAGTCTGTTGTAGGATGTATTATGTCTTTTCGATGTTCCTTGTCATGGATTTAACTTGTACATGTAGCAGCAGGCAATTTGCCTCATTTCGCCACTAATCCCACTTTTTGTAGATGGTTGCCTGTAGTATTTCTTGTAGCTGACTGGACAACGTAAACAATCTTGCATTGGTAGTGTAAACATGTTAATCTATTTTTGTGCAGGGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCTAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTT</genome_strand>
        <mrna_strand>CGCCAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG................................................................................CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCAAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254328" ref_strand="+" ref_description="SGN-E254328 [cLEG-27-L16]">
      <seq>atttctgtccttcacttcagcttaaaaaagcacgacagttacactgatccaataaaatctaaagaagagatgatattcaatcttgggtttcgccagtttgttgcaaggcccatattttcttccgatagttttaacgctgataagcaaaaaatggagagatttctccatcccgggcgtttttcagtagcttcagtatatgctcctatttcatttcctccccttcctttaattgccctgaagattaaagacgatgcaactcctgccactgttgctgccattggctctttgagaagtattgacccagataggattattctaaagaaaattattttaaccggttaccctcaacgagtatcaaaacagaaagcgacggtaagatacatgtttcataacccagaggatgtcagatggttcaagcctgttgaagtttggtcaaagtgtggtcgtcgtggtcgcatcaaggaacctgttggtacacatggggcaatgaagtgcatcttgaatggagtcctccaacagcatgacacgttatgcatgagtttgtttaaacgcacatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14101" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13801" g_stop="13782" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13572" g_stop="13486" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="107" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13390" g_stop="13160" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="338" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12535" g_stop="12457" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="417" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12376" g_stop="12313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="481" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11644" g_stop="11567" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="559" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E254328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13801" e_stop="13782"/>
          <exon e_start="13572" e_stop="13486"/>
          <exon e_start="13390" e_stop="13160"/>
          <exon e_start="12535" e_stop="12457"/>
          <exon e_start="12376" e_stop="12313"/>
          <exon e_start="11644" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGTCCTTCACTTCAGGTACCTTATCTTGTTATATGATTTTGTAGTATCTCCCCCCTTATTTTCTTCCTTAGTGTTTCTATGTGTAATTGTTCAAGTACTCAAGTAATTTTCACTTCAGGTACCTCATCTTGTTATATGCTTTTGTAATATTTCCCCCCTAATTTTCTTTCCCTAGTGGTTCTATGTGTTATTGTGTAAGTACTCAAGTAATTTTCTTTTTGCAGCTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGGGTAAGATTCCTCTGTCATTTTAAAGGGGGGCTTGGATATTCTATTCCTTTGTTTATGTGGGAGGGGTCTGATTTCTGAGAATGACAGCATAATGAAGTATCGCTACTTTAGGTTGGATTGATTGATCAGCTTCGCTACCTATAACACTTGCTATAGTTGTGATTATATTTAGGTTTTTCACTGTTCTGTTTTTTCTCGGCTTTCATTTGTTTACAGCGGTAGAGATGTTTAGAGGATTATTTCTGGAACTTCTTGTTCTGAACAACTTAGACTTTCTGTTTTTTTTTTAATCAAATTTGGTCTATAGACTGAACCTACTAAGTGCCACAATATAGACTTGTTATGCTTTTTTACTAGGCATAACATAACATATAATGTGTGAACCAAAAATCTTGTTAATTGTGTATTCCAGCTGGGATCCTGGTAAAGTTAATTGGAGTATCATTCTAGTCATTCATCCTTGCATGGTAGAGAACTTTTTTGAGGATCATATAATTTGCAATATTTTATTTTAGAATTTTAGGGTTTTTTAGTCCTTAAAATGCAAAAGCTGATTGTAGAGAGTCAGTAGGTGATATTGTTAAGTTAACCTTTTGTTCACAAGATATGTCATCTATGTTGCAGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAGGTATGCAAACAATTGACTTTTCTATTTTCTTCTTTGTCATGCTCTTTTCACTTTTAACATATTTACTGGACCTTTTGTAGCCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATGGTATGTCTGAAATTTGATTTGAAGTCTTCGAGATATATGCGGAAATTTTCCACTCTTCTTCTATCCAAACATCTCCCCTCCTCCCCCCTTGAAAAGAGGAAAAAGGCTTGTCCAGATGTTAGAATTTTCCAGTGTTGTGCTCATTAGTGAGTGGTGTTATTTGACTAATCATGCATAAGGTTGTCATTTTCCCCTTATTATGTGGCCTGTGGCCAAGGAAGCCTATTGTGAGCATACATTTCCTCTGTTCACGATGCATATAATTTAGATCTACTAGAAAAACTAAAAGCTCTGCACGTTATTGGGTTCTTTGAGCACTCGACTATCTACAGCTTGTAGGTCAGCAAGCATATGATCATTTCATTGCCCTTCTACCATTTGTGGGTGCCCGAACATTTTGACCCTTTCTAGATGAATACCTGCTGTCGCATGCTCTACTAACTGGCAAAAGTACAATTGTTTTTTGAGTCTGTTGTAGGATGTATTATGTCTTTTCGATGTTCCTTGTCATGGATTTAACTTGTACATGTAGCAGCAGGCAATTTGCCTCATTTCGCCACTAATCCCACTTTTTGTAGATGGTTGCCTGTAGTATTTCTTGTAGCTGACTGGACAACGTAAACAATCTTGCATTGGTAGTGTAAACATGTTAATCTATTTTTGTGCAGGGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACC</genome_strand>
        <mrna_strand>ATTTCTGTCCTTCACTTCAG.................................................................................................................................................................................................................CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG................................................................................CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258506" ref_strand="+" ref_description="SGN-E258506 [cLEG-47-I9]">
      <seq>atttctgtccttcacttcagcttaaaaaagcacgacagttacactgatccaataaaatctaaagaagagatgatattcaatcttgggtttcgccagtttgttgcaaggcccatattttcttccgatagttttaacgctgataagcaaaaaatggagagatttctccatcccgggcgtttttcagtagcttcagtatatgctcctatttcatttcctccccttcctttaattgccctgaagattaaagacgatgcaacctcctgccactgttgctgccattggctctttgagaagtattgacccagataagattattctaaagaaaattattttaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14101" stop="12861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13801" g_stop="13782" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13572" g_stop="13486" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="107" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13390" g_stop="13161" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="338" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E258506" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13801" e_stop="13782"/>
          <exon e_start="13572" e_stop="13486"/>
          <exon e_start="13390" e_stop="13161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGTCCTTCACTTCAGGTACCTTATCTTGTTATATGATTTTGTAGTATCTCCCCCCTTATTTTCTTCCTTAGTGTTTCTATGTGTAATTGTTCAAGTACTCAAGTAATTTTCACTTCAGGTACCTCATCTTGTTATATGCTTTTGTAATATTTCCCCCCTAATTTTCTTTCCCTAGTGGTTCTATGTGTTATTGTGTAAGTACTCAAGTAATTTTCTTTTTGCAGCTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAA-CTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCG</genome_strand>
        <mrna_strand>ATTTCTGTCCTTCACTTCAG.................................................................................................................................................................................................................CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACCTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAAGATTATTCTAAAGAAAATTATTTTAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257480" ref_strand="+" ref_description="SGN-E257480 [cLEG-45-J10]">
      <seq>tttctgtccttcacttcagcttaaaaaagcacgacagttacactgatccaataaaatctaaagaagagatgatattcaatcttgggtttccccagtttgttgcaaggcccatattttcttccgataggtttaacgctgataagcaaaaaatggagagatttctccctcccgggcgtttttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14100" stop="13015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13800" g_stop="13782" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13572" g_stop="13486" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="106" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.655" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13390" g_stop="13312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="185" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E257480" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13800" e_stop="13782"/>
          <exon e_start="13572" e_stop="13486"/>
          <exon e_start="13390" e_stop="13312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTCCTTCACTTCAGGTACCTTATCTTGTTATATGATTTTGTAGTATCTCCCCCCTTATTTTCTTCCTTAGTGTTTCTATGTGTAATTGTTCAAGTACTCAAGTAATTTTCACTTCAGGTACCTCATCTTGTTATATGCTTTTGTAATATTTCCCCCCTAATTTTCTTTCCCTAGTGGTTCTATGTGTTATTGTGTAAGTACTCAAGTAATTTTCTTTTTGCAGCTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTA</genome_strand>
        <mrna_strand>TTTCTGTCCTTCACTTCAG.................................................................................................................................................................................................................CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCCCCAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGGTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCCTCCCGGGCGTTTTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341071" ref_strand="+" ref_description="SGN-E341071 [cTOE-22-O1]">
      <seq>tgggacccaaaagaatctctacctcaagagtagggctagaatatttgcatttgacaattttaataggacgcaaaagcatgtactgtctagagcccgagagatggaacagaacgttgatgaatgtataccagctggttcatatgcaaggctccatatccgggaagttccaaatggtgtggcaaacaagttaaatcttgtaacgaagacaatgcctgtgatcctgtgtggtctgatgcagcatgagtctaaaatttctgtccttcacttcagcttaaaaaagcacgacagttacactgatccaataaaatctaaagaagagatgatattcaatcttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14340" stop="13205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14136" g_stop="14125" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14124" i_stop="14039" i_length="86">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14038" g_stop="13782" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="270" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13572" g_stop="13505" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="338" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E341071" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14136" e_stop="14125"/>
          <exon e_start="14038" e_stop="13782"/>
          <exon e_start="13572" e_stop="13505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCCAAAAGTAACTTCTTCTGTTAATTCAATAATTTGTCTCAAAAAATATCTGGACGTGATCTAATTGTATTAAATCTTGGTTGGGATTTGCAGGAATCTCTACCTCAAGAGTA-TGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAGGTACCTTATCTTGTTATATGATTTTGTAGTATCTCCCCCCTTATTTTCTTCCTTAGTGTTTCTATGTGTAATTGTTCAAGTACTCAAGTAATTTTCACTTCAGGTACCTCATCTTGTTATATGCTTTTGTAATATTTCCCCCCTAATTTTCTTTCCCTAGTGGTTCTATGTGTTATTGTGTAAGTACTCAAGTAATTTTCTTTTTGCAGCTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGT</genome_strand>
        <mrna_strand>TGGGACCCAAAA......................................................................................GAATCTCTACCTCAAGAGTAGGGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAG.................................................................................................................................................................................................................CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306723" ref_strand="+" ref_description="SGN-E306723 [cLEY-19-K12]">
      <seq>tctagcctgtcttcttatatttcccgaggattgtaagttctatccagcagatacaaaggatgatttgcacaagttcttgtggcttttcaaggagcaaaggttctcagtaccacattggcgtaatcagcggccatatctaatggctcaaaaggtcgacgtggtagctgataattccatttctggaaaatgtacactcctcctctctggttatattcgtgctcgtagcctgtcggtgaatcagctggttcacataacaggtgctggagattttcagttatccaagatcgaacttctcaaggatccatgttccctgaatgtgagaaaaggaggagacttaatggagtctgatgacatgaatgaggcacaggtcatcagttgcttgactcctgaccctatgaagcaagagcctttacttgttgagaatgtccctgatccattggctggggaacagacatggcctactgaggcagaaatggctgaagcagaaagaaatcaagaggaaagaaagctgaaaaggaaaactcttcctaagggcacttctgaatatcaggctgcttggattgtagaagattcagatgctgatgtttctgagagcgagaatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="18001" stop="14821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17701" g_stop="17630" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17629" i_stop="17520" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17519" g_stop="17442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="151" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="244" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16436" g_stop="16314" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="367" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15689" g_stop="15606" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="451" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15369" g_stop="15271" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="550" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15270" i_stop="15176" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15175" g_stop="15121" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="605" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E306723" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17701" e_stop="17630"/>
          <exon e_start="17519" e_stop="17442"/>
          <exon e_start="16603" e_stop="16511"/>
          <exon e_start="16436" e_stop="16314"/>
          <exon e_start="15689" e_stop="15606"/>
          <exon e_start="15369" e_stop="15271"/>
          <exon e_start="15175" e_stop="15121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCCTGTCTTCTGA-ATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAGGTAATGATTTGGAGATTCTGTTTTATGATGTCCTCTGATATATCTCTATCATAGTGTATTAACCTATGAAATTATTGTTTGTTCTTTTGGGTCATTTTTGTTATTTGTAGTTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTATTAACCACCTTCCATTTTCCCACTTGACATAGTTTATCTCCTTTGTGGCTTCTGACTGGTAACATTTTCTTTTAGCTTTTTTAGATGAAATATATTCACCAGGAAAAAAAGGAGCAAAACCAATTATTCCCCAAAGTATACATCGTTAAATCAGTCTTGAATTTGGTTGTTATTTATGTATGTTAATCTTGAATGAATTTTCTCCAATGTTGTTTGACTGTGAATGTTTCAAAGCATAGAGGGGATATATTGATCATATCGTTGACCCCAACTAACTTGAGATTGAAGTGTAGTTATTGGGTGGTATTTTATCTGTTTGCACAATTTCTTTTTTAAAGTAGTTATCCAATTCAGCACCTGCTTTCCTGAATTATAATGTGTATACTGTCCCTCCTAATACATTTTTCTACAGAACATAACAGTGATTGCTTATCTATTTTTTTAACCATTATGTGGAAATTTAGTTGTCTTGGTGACTCTTATGGAAGTAATGTATTTGTATCCGTTCATTCATTTTTAACAGTTAGGCGGACATTTCTTGACAATCTTCTGAATGGGCCTAAAGAAAGCAGCATGGGTACAACAGATTCATATAGCCAATTCTAACTAGCTTGGGATTGAGGGATAGTTATTAATTGTAAGACAGCATTTCTTCATGCCTAGGGCTCTAGACCATGATTTTGACTACCCAATAACTAAAATGTATAGGCCATGATTTCGTGTGCTCAACTTCATATTCAATGTTGGTGACTCTGAATTTACTTTGTTCTCAACTATGGTTTGGGGCCTCTGTAATTCTGCAGATAAGGTTGTTAGTGTATATTTTGTTTTTCAGGTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTGGTAATTGTTTTGCTTCACCATATAGCTTTGAGATATTAACGAATTGTCCTTGACAGTAGATGCTCTTGGATCAGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAGGTGCACTTATATTTTGTTTACTTAAAGAGAAACTCTTTGTGGTATTGCAGAAATTATTTGATAAAGATAAAACTTGAACTGTAAAATATTGGTTTCCAATTGAATCTACTCATGCTTGAATTTCTTTGGGTTCATTTCTTGTCTCACCATTCTTCCCTTTTTTTGGACCTAGAGGCAACATTTTGGCAGACACCAAAATACAATTTATTAATGAACTTGATCAGCTTTGTCCTTCCACTGGTTAGCTATGCTCCTCGTAGAAGGCATTTTGCTCATGAAGTCCAACATTTCAAAGTTGTACATTGCAAATTGCATATTGAAATACATAGAGGTTCAAATGCTCAAGTTACCACAAGTGTAGTTATAACCTTGTACTAAAATAATGGGATACATATGACATTGTAGCTATGTGCTCCTAGTGCAGCTGTCATCATTCTTCCCCCTTTTCTGAATGATGCATTTTCAAAAAACCCAACCCCTCTCCTTGAGTGATGCAACATGATATGCAATCATCTATTCTCCCCTGGGCCTTCTGTAGTACATTTCATGGTTTCTTTAACAGAATACTTTTTGTTTCCCCTCTTCTCAGATCTCATCCCAGCTATGTCTTCTAATGTATTTCAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGGTATAACTCTATTCTTGGCCCAATTTTATTGTTCATTCTATGGAAGGAGGAGTGGAGAAAGTTCCTATATGAAATGCACGAGTTATATCATTTTACCCTGTGCAATTCTTTTGTAACTACTGAACTATTGGTTCTTGATGAGATGCACTTGTTTCATAATTGTACCTACTTGTGCCATTTTTCTGTAACCATTTGTAATTTGTACAAATACTTGATGTCTATTTGATCTTAATCAGACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAAGGGCACTTCTGAATATCAGGTTCATTTTCTGTCAATAGTTTCCCGAACATGTATGTATTCTTATTGTAACCTGGGCATATTGGTTTATACTAGAATTAATTAGTTGAGTTGCAGGCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGAGAGCGAGAATGAAG</genome_strand>
        <mrna_strand>TCTAGCCTGTCTTCTTATATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAG..............................................................................................................TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG..........................................................................GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG............................................................................................................................................................................................................................................ACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAAGGGCACTTCTGAATATCAG...............................................................................................GCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGAGAGCGAGAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305879" ref_strand="+" ref_description="SGN-E305879 [cLEY-17-K12]">
      <seq>tctagcctgtcttctgaatttcccgaggattgtaagttctatccagcagatacaaaggatgatttgcacaagttcttgtggcttttcaaggagcaaaggttctcagtaccacattggcgtaatcagcggccatatctaatggctcaaaaggtcgacgtggtagctgataattccatttctggaaaatgtacactcctcctctctggttatattcgtgctcgtagcctgtcggtgaatcagctggttcacataacaggtgctggagattttcagttatccaagatcgaacttctcaaggatccatgttccctgaatgtgagaaaaggaggagacttaatggagtctgatgacatgaatgaggcacaggtcatcagttgcttgactcctgaccctatgaagcaagagcctttacttgttgagaatgtccctgatccattggctggggaacagacatggcctactgaggcagaaatggctgaagcagaaagaaatcaagaggaaagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="18001" stop="15012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17701" g_stop="17630" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17629" i_stop="17520" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17519" g_stop="17442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="150" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="243" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16436" g_stop="16314" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="366" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15689" g_stop="15606" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="450" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15369" g_stop="15312" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="508" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E305879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17701" e_stop="17630"/>
          <exon e_start="17519" e_stop="17442"/>
          <exon e_start="16603" e_stop="16511"/>
          <exon e_start="16436" e_stop="16314"/>
          <exon e_start="15689" e_stop="15606"/>
          <exon e_start="15369" e_stop="15312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAGGTAATGATTTGGAGATTCTGTTTTATGATGTCCTCTGATATATCTCTATCATAGTGTATTAACCTATGAAATTATTGTTTGTTCTTTTGGGTCATTTTTGTTATTTGTAGTTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTATTAACCACCTTCCATTTTCCCACTTGACATAGTTTATCTCCTTTGTGGCTTCTGACTGGTAACATTTTCTTTTAGCTTTTTTAGATGAAATATATTCACCAGGAAAAAAAGGAGCAAAACCAATTATTCCCCAAAGTATACATCGTTAAATCAGTCTTGAATTTGGTTGTTATTTATGTATGTTAATCTTGAATGAATTTTCTCCAATGTTGTTTGACTGTGAATGTTTCAAAGCATAGAGGGGATATATTGATCATATCGTTGACCCCAACTAACTTGAGATTGAAGTGTAGTTATTGGGTGGTATTTTATCTGTTTGCACAATTTCTTTTTTAAAGTAGTTATCCAATTCAGCACCTGCTTTCCTGAATTATAATGTGTATACTGTCCCTCCTAATACATTTTTCTACAGAACATAACAGTGATTGCTTATCTATTTTTTTAACCATTATGTGGAAATTTAGTTGTCTTGGTGACTCTTATGGAAGTAATGTATTTGTATCCGTTCATTCATTTTTAACAGTTAGGCGGACATTTCTTGACAATCTTCTGAATGGGCCTAAAGAAAGCAGCATGGGTACAACAGATTCATATAGCCAATTCTAACTAGCTTGGGATTGAGGGATAGTTATTAATTGTAAGACAGCATTTCTTCATGCCTAGGGCTCTAGACCATGATTTTGACTACCCAATAACTAAAATGTATAGGCCATGATTTCGTGTGCTCAACTTCATATTCAATGTTGGTGACTCTGAATTTACTTTGTTCTCAACTATGGTTTGGGGCCTCTGTAATTCTGCAGATAAGGTTGTTAGTGTATATTTTGTTTTTCAGGTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTGGTAATTGTTTTGCTTCACCATATAGCTTTGAGATATTAACGAATTGTCCTTGACAGTAGATGCTCTTGGATCAGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAGGTGCACTTATATTTTGTTTACTTAAAGAGAAACTCTTTGTGGTATTGCAGAAATTATTTGATAAAGATAAAACTTGAACTGTAAAATATTGGTTTCCAATTGAATCTACTCATGCTTGAATTTCTTTGGGTTCATTTCTTGTCTCACCATTCTTCCCTTTTTTTGGACCTAGAGGCAACATTTTGGCAGACACCAAAATACAATTTATTAATGAACTTGATCAGCTTTGTCCTTCCACTGGTTAGCTATGCTCCTCGTAGAAGGCATTTTGCTCATGAAGTCCAACATTTCAAAGTTGTACATTGCAAATTGCATATTGAAATACATAGAGGTTCAAATGCTCAAGTTACCACAAGTGTAGTTATAACCTTGTACTAAAATAATGGGATACATATGACATTGTAGCTATGTGCTCCTAGTGCAGCTGTCATCATTCTTCCCCCTTTTCTGAATGATGCATTTTCAAAAAACCCAACCCCTCTCCTTGAGTGATGCAACATGATATGCAATCATCTATTCTCCCCTGGGCCTTCTGTAGTACATTTCATGGTTTCTTTAACAGAATACTTTTTGTTTCCCCTCTTCTCAGATCTCATCCCAGCTATGTCTTCTAATGTATTTCAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGGTATAACTCTATTCTTGGCCCAATTTTATTGTTCATTCTATGGAAGGAGGAGTGGAGAAAGTTCCTATATGAAATGCACGAGTTATATCATTTTACCCTGTGCAATTCTTTTGTAACTACTGAACTATTGGTTCTTGATGAGATGCACTTGTTTCATAATTGTACCTACTTGTGCCATTTTTCTGTAACCATTTGTAATTTGTACAAATACTTGATGTCTATTTGATCTTAATCAGACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGC</genome_strand>
        <mrna_strand>TCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAG..............................................................................................................TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG..........................................................................GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG............................................................................................................................................................................................................................................ACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271015" ref_strand="+" ref_description="SGN-E271015 [cLEM-22-J11]">
      <seq>aggttctcagtaccacattggcgtaatcagcggccatatctaatggctcaaaaggtcgacgtggtagctgataattccatttctggaaaatgtacactcctcctctctggttatattcgtgctcgtagcctgtcggtgaatcagctggttcacataacaggtgctggagattttcagttatccaagatcgaacttctcaaggatccatgttccctgaatgtgagaaaaggaggagacttaatggagtctgatgacatgaatgaggcacaggtcatcagttgcttgactcctgaccctatgaagcaagagcctctacttgttgagaatgtccctgatccattggctggggaacagacatggcctactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="17795" stop="15055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17495" g_stop="17442" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16603" g_stop="16511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="147" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16436" g_stop="16314" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="270" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15689" g_stop="15606" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="354" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15369" g_stop="15355" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="369" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E271015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17495" e_stop="17442"/>
          <exon e_start="16603" e_stop="16511"/>
          <exon e_start="16436" e_stop="16314"/>
          <exon e_start="15689" e_stop="15606"/>
          <exon e_start="15369" e_stop="15355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTATTAACCACCTTCCATTTTCCCACTTGACATAGTTTATCTCCTTTGTGGCTTCTGACTGGTAACATTTTCTTTTAGCTTTTTTAGATGAAATATATTCACCAGGAAAAAAAGGAGCAAAACCAATTATTCCCCAAAGTATACATCGTTAAATCAGTCTTGAATTTGGTTGTTATTTATGTATGTTAATCTTGAATGAATTTTCTCCAATGTTGTTTGACTGTGAATGTTTCAAAGCATAGAGGGGATATATTGATCATATCGTTGACCCCAACTAACTTGAGATTGAAGTGTAGTTATTGGGTGGTATTTTATCTGTTTGCACAATTTCTTTTTTAAAGTAGTTATCCAATTCAGCACCTGCTTTCCTGAATTATAATGTGTATACTGTCCCTCCTAATACATTTTTCTACAGAACATAACAGTGATTGCTTATCTATTTTTTTAACCATTATGTGGAAATTTAGTTGTCTTGGTGACTCTTATGGAAGTAATGTATTTGTATCCGTTCATTCATTTTTAACAGTTAGGCGGACATTTCTTGACAATCTTCTGAATGGGCCTAAAGAAAGCAGCATGGGTACAACAGATTCATATAGCCAATTCTAACTAGCTTGGGATTGAGGGATAGTTATTAATTGTAAGACAGCATTTCTTCATGCCTAGGGCTCTAGACCATGATTTTGACTACCCAATAACTAAAATGTATAGGCCATGATTTCGTGTGCTCAACTTCATATTCAATGTTGGTGACTCTGAATTTACTTTGTTCTCAACTATGGTTTGGGGCCTCTGTAATTCTGCAGATAAGGTTGTTAGTGTATATTTTGTTTTTCAGGTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTGGTAATTGTTTTGCTTCACCATATAGCTTTGAGATATTAACGAATTGTCCTTGACAGTAGATGCTCTTGGATCAGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAGGTGCACTTATATTTTGTTTACTTAAAGAGAAACTCTTTGTGGTATTGCAGAAATTATTTGATAAAGATAAAACTTGAACTGTAAAATATTGGTTTCCAATTGAATCTACTCATGCTTGAATTTCTTTGGGTTCATTTCTTGTCTCACCATTCTTCCCTTTTTTTGGACCTAGAGGCAACATTTTGGCAGACACCAAAATACAATTTATTAATGAACTTGATCAGCTTTGTCCTTCCACTGGTTAGCTATGCTCCTCGTAGAAGGCATTTTGCTCATGAAGTCCAACATTTCAAAGTTGTACATTGCAAATTGCATATTGAAATACATAGAGGTTCAAATGCTCAAGTTACCACAAGTGTAGTTATAACCTTGTACTAAAATAATGGGATACATATGACATTGTAGCTATGTGCTCCTAGTGCAGCTGTCATCATTCTTCCCCCTTTTCTGAATGATGCATTTTCAAAAAACCCAACCCCTCTCCTTGAGTGATGCAACATGATATGCAATCATCTATTCTCCCCTGGGCCTTCTGTAGTACATTTCATGGTTTCTTTAACAGAATACTTTTTGTTTCCCCTCTTCTCAGATCTCATCCCAGCTATGTCTTCTAATGTATTTCAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGGTATAACTCTATTCTTGGCCCAATTTTATTGTTCATTCTATGGAAGGAGGAGTGGAGAAAGTTCCTATATGAAATGCACGAGTTATATCATTTTACCCTGTGCAATTCTTTTGTAACTACTGAACTATTGGTTCTTGATGAGATGCACTTGTTTCATAATTGTACCTACTTGTGCCATTTTTCTGTAACCATTTGTAATTTGTACAAATACTTGATGTCTATTTGATCTTAATCAGACATGGCCTACTGAG</genome_strand>
        <mrna_strand>AGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG..........................................................................GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTCTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG............................................................................................................................................................................................................................................ACATGGCCTACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306632" ref_strand="+" ref_description="SGN-E306632 [cLEY-19-I12]">
      <seq>ttcttgtggcttttcaaggagcaaaggttctcagtaccacattggcgttatcagcggccatatctaatggctcagaagggctacttagtagctgataattccatttctggaaaatgtacactcctcctctctggttatattcttgctcgtagcctgtcggtgaatcaactggttcacataacaggtgctggagattttcagttatccaagatcgaacttctcaaggatccatgttccctgaatgtgagaaaaggaggagacttaatggagtctgatgacatgaatgaggcacaggtcatcagttgcttgactcctgaccctttgaagcaagagcctttacttgttgagaatgtccctgatccattggctggggaacagacatggcctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="17819" stop="15293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17519" g_stop="17442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16603" g_stop="16511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="171" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16436" g_stop="16314" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="294" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15689" g_stop="15606" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="378" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15369" g_stop="15357" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="391" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E306632" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17519" e_stop="17442"/>
          <exon e_start="16603" e_stop="16511"/>
          <exon e_start="16436" e_stop="16314"/>
          <exon e_start="15689" e_stop="15606"/>
          <exon e_start="15369" e_stop="15357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTATTAACCACCTTCCATTTTCCCACTTGACATAGTTTATCTCCTTTGTGGCTTCTGACTGGTAACATTTTCTTTTAGCTTTTTTAGATGAAATATATTCACCAGGAAAAAAAGGAGCAAAACCAATTATTCCCCAAAGTATACATCGTTAAATCAGTCTTGAATTTGGTTGTTATTTATGTATGTTAATCTTGAATGAATTTTCTCCAATGTTGTTTGACTGTGAATGTTTCAAAGCATAGAGGGGATATATTGATCATATCGTTGACCCCAACTAACTTGAGATTGAAGTGTAGTTATTGGGTGGTATTTTATCTGTTTGCACAATTTCTTTTTTAAAGTAGTTATCCAATTCAGCACCTGCTTTCCTGAATTATAATGTGTATACTGTCCCTCCTAATACATTTTTCTACAGAACATAACAGTGATTGCTTATCTATTTTTTTAACCATTATGTGGAAATTTAGTTGTCTTGGTGACTCTTATGGAAGTAATGTATTTGTATCCGTTCATTCATTTTTAACAGTTAGGCGGACATTTCTTGACAATCTTCTGAATGGGCCTAAAGAAAGCAGCATGGGTACAACAGATTCATATAGCCAATTCTAACTAGCTTGGGATTGAGGGATAGTTATTAATTGTAAGACAGCATTTCTTCATGCCTAGGGCTCTAGACCATGATTTTGACTACCCAATAACTAAAATGTATAGGCCATGATTTCGTGTGCTCAACTTCATATTCAATGTTGGTGACTCTGAATTTACTTTGTTCTCAACTATGGTTTGGGGCCTCTGTAATTCTGCAGATAAGGTTGTTAGTGTATATTTTGTTTTTCAGGTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTGGTAATTGTTTTGCTTCACCATATAGCTTTGAGATATTAACGAATTGTCCTTGACAGTAGATGCTCTTGGATCAGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAGGTGCACTTATATTTTGTTTACTTAAAGAGAAACTCTTTGTGGTATTGCAGAAATTATTTGATAAAGATAAAACTTGAACTGTAAAATATTGGTTTCCAATTGAATCTACTCATGCTTGAATTTCTTTGGGTTCATTTCTTGTCTCACCATTCTTCCCTTTTTTTGGACCTAGAGGCAACATTTTGGCAGACACCAAAATACAATTTATTAATGAACTTGATCAGCTTTGTCCTTCCACTGGTTAGCTATGCTCCTCGTAGAAGGCATTTTGCTCATGAAGTCCAACATTTCAAAGTTGTACATTGCAAATTGCATATTGAAATACATAGAGGTTCAAATGCTCAAGTTACCACAAGTGTAGTTATAACCTTGTACTAAAATAATGGGATACATATGACATTGTAGCTATGTGCTCCTAGTGCAGCTGTCATCATTCTTCCCCCTTTTCTGAATGATGCATTTTCAAAAAACCCAACCCCTCTCCTTGAGTGATGCAACATGATATGCAATCATCTATTCTCCCCTGGGCCTTCTGTAGTACATTTCATGGTTTCTTTAACAGAATACTTTTTGTTTCCCCTCTTCTCAGATCTCATCCCAGCTATGTCTTCTAATGTATTTCAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGGTATAACTCTATTCTTGGCCCAATTTTATTGTTCATTCTATGGAAGGAGGAGTGGAGAAAGTTCCTATATGAAATGCACGAGTTATATCATTTTACCCTGTGCAATTCTTTTGTAACTACTGAACTATTGGTTCTTGATGAGATGCACTTGTTTCATAATTGTACCTACTTGTGCCATTTTTCTGTAACCATTTGTAATTTGTACAAATACTTGATGTCTATTTGATCTTAATCAGACATGGCCTACTG</genome_strand>
        <mrna_strand>TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTTATCAGCGGCCATATCTAATGGCTCAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACTTAGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCTTGCTCGTAGCCTGTCGGTGAATCAACTG..........................................................................GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAGTTGCTTGACTCCTGACCCTTTGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG............................................................................................................................................................................................................................................ACATGGCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699763" ref_strand="+" ref_description="SGN-E699763 [FA11AE12]">
      <seq>cacataagagatgctcttttgaaagagaaaagagcttcatctggatcaaatagtccgcccagagttattgttctgtttggcctatcccgatcagtcgaccttagtgcgcttgaacaagatctcctgaagctattgtccgcagatggaactgttgttgtgtatccagcagttgcttcctcagaatataagttgagagcaacggttttaaaagcacctcatggtgatctcttggcatgtatggagatggccaaggttgctgatctgattgcttttgtcacatctgcaagttcctctaatgaagaagattgttatatagatgcatttggatctcactgcctttcgatctttagagctcttggtcttcctagtacagcagtactgattcgtgatctacccagtgagttaaaaaagaaaaacgattcaaagaaggtttgtacatctagcctgtcttctgaatttcccgaggattgtaagttctatccagcagatacaaaggatgatttgcacaagttcttgtggcttttcaaggagcaaaggttctcagtaccacattggcgtaatcagcggccatatctaatggctcaaaaggtcgacgtggtagctgataattccatttctggaaaatgtacactcctcctctctggttatattcgtgctcgtagcctgtcggtgaatcagctggttcacataacaggtgctggagattttcagttatccaagatcgaacttctcaaggatccatgttccctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="19715" stop="16065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19415" g_stop="19347" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19346" i_stop="18962" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18961" g_stop="18830" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="201" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18829" i_stop="18139" i_length="691">
            <donor d_prob="0.108" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="18088" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="252" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18087" i_stop="17995" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17994" g_stop="17860" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="387" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17859" i_stop="17753" i_length="107">
            <donor d_prob="0.121" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17752" g_stop="17630" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="510" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17629" i_stop="17520" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17519" g_stop="17442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="588" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16603" g_stop="16511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="681" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16436" g_stop="16365" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="753" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E699763" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19415" e_stop="19347"/>
          <exon e_start="18961" e_stop="18830"/>
          <exon e_start="18138" e_stop="18088"/>
          <exon e_start="17994" e_stop="17860"/>
          <exon e_start="17752" e_stop="17630"/>
          <exon e_start="17519" e_stop="17442"/>
          <exon e_start="16603" e_stop="16511"/>
          <exon e_start="16436" e_stop="16365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATTGTAAGTATTCTTCTTTGTTTTTATTGTTTCTCTCTTCATTTTTGGATTCCTATATAATGATCCCGGACATAATGTTGGACATGAAGAATAAAATAAGAAAAGTTTTTTCTTTGCTTAATTTTTCAAATTTTCTTAGGATTTGGTCTATTTCCATACATTTAACTAAGAACAACTACAAATAATTTCAAATTGGAAAAAAAATTAAAAGATCAAGTCATCAATGGAAAACTTTTTTGGATTGTTGAATGAAAAGATTTAATTAGTAATCTTGAATTGATGTTAAAGCAGTTATTATAAGTAATCCGACTCCATGATCAGCTGGAGTGAAGGAGAAGGAAGATATCTGTTATCACGCATCAGTTCCTGACAATTTTTTATGTGACAGGTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACGGTAGGAGTGCATTGTGGGAACTCCCTTTATCAATTAAGTACTATACTTGCATTATTGAATTGGTCTCAGGTTCTAATTTTGGTGAAAGTATCATATAATGAGTAAACAGAAACAGAAGCTTTTGCATCTCTGCAAACATAGTTTTGTCAAGTACAATCAATAAATCAATAATGTTTAGAGGACTTATGCCTTAACCTTGGTAATCAACTGACTTCAGACACTTGATTAACTTCAGGATGGTAAAGTAATATGTCCGATTTTTCTTTCAATAAGTAAAACACATCACTGAATAGTATTAAGAAGATTCTGAAATACAGAGTTCGAAAAGCAAAATGTGAGTTTCTTTTTCTAATCTATAATAGAACTTCAGCAAGATAGGGAAGTCATTTATGGGACTATAAGCTTTAATAGTACATTATAGGATAGGAGGAGCTTTGACTGCACTTAAGAGTATGAGTAAGAGGATGCTAGGTTCAGGTATGTGTTTGCCATACCAAAATGCCAGAGAAAATCTTATTTACTCTTATGAATTTTTCATATCACAATTTTTTTGGTGTCAAATCTGATGCCAGAAGCAGCATACAGTAAATTGTTTGTCAGTTATTGATAATTGAGTAGTTTTCCTTGCTTTGACTTGTACGTTCTTCACAGAAAGTTCTGCAGAAGTTTAACAGTAAGTTATTTTATCTAGGTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAGGTATGATATATGCCCTGAAGTATTTCCAGGTTTTGGTTGCTCTTACGTTCTTTGTATCAAGGATGATTTAGTTAGAAGCTTTGGCATTTGTAGGTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGTGTAAGAATTAAAGATACTTCTCTGGAAGGAAGTGCTTTTGTCATATTCTTGAGAATGGTAGATAATTAAGGAGTTGACACTTGAACATGTCTTTTTCTGTGTTTTAGGATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAGGTAATGATTTGGAGATTCTGTTTTATGATGTCCTCTGATATATCTCTATCATAGTGTATTAACCTATGAAATTATTGTTTGTTCTTTTGGGTCATTTTTGTTATTTGTAGTTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTATTAACCACCTTCCATTTTCCCACTTGACATAGTTTATCTCCTTTGTGGCTTCTGACTGGTAACATTTTCTTTTAGCTTTTTTAGATGAAATATATTCACCAGGAAAAAAAGGAGCAAAACCAATTATTCCCCAAAGTATACATCGTTAAATCAGTCTTGAATTTGGTTGTTATTTATGTATGTTAATCTTGAATGAATTTTCTCCAATGTTGTTTGACTGTGAATGTTTCAAAGCATAGAGGGGATATATTGATCATATCGTTGACCCCAACTAACTTGAGATTGAAGTGTAGTTATTGGGTGGTATTTTATCTGTTTGCACAATTTCTTTTTTAAAGTAGTTATCCAATTCAGCACCTGCTTTCCTGAATTATAATGTGTATACTGTCCCTCCTAATACATTTTTCTACAGAACATAACAGTGATTGCTTATCTATTTTTTTAACCATTATGTGGAAATTTAGTTGTCTTGGTGACTCTTATGGAAGTAATGTATTTGTATCCGTTCATTCATTTTTAACAGTTAGGCGGACATTTCTTGACAATCTTCTGAATGGGCCTAAAGAAAGCAGCATGGGTACAACAGATTCATATAGCCAATTCTAACTAGCTTGGGATTGAGGGATAGTTATTAATTGTAAGACAGCATTTCTTCATGCCTAGGGCTCTAGACCATGATTTTGACTACCCAATAACTAAAATGTATAGGCCATGATTTCGTGTGCTCAACTTCATATTCAATGTTGGTGACTCTGAATTTACTTTGTTCTCAACTATGGTTTGGGGCCTCTGTAATTCTGCAGATAAGGTTGTTAGTGTATATTTTGTTTTTCAGGTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTGGTAATTGTTTTGCTTCACCATATAGCTTTGAGATATTAACGAATTGTCCTTGACAGTAGATGCTCTTGGATCAGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAAT</genome_strand>
        <mrna_strand>CACATAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATT.................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAG.............................................................................................GTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGT...........................................................................................................GATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAG..............................................................................................................TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG..........................................................................GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578369" ref_strand="+" ref_description="SGN-E578369 [LE12DA02]">
      <seq>gtttattgttagaagaaaaattgagggctgtttactcaatcgtagagaagatgggaggtgctcgagctcaagtaaataaagctcacaaaactcgatttgcttcaaagtcatctcgcaatgttcataaagtttcttcaaaagataagagtagaattgcgaaacctgatcgcaatctcactaagggagctcgggcagctcggcttcagcgtaataagatgatgagggagcagaaaagagatgctcttttgaaagagaaaagagcttcatctggatcaaatagtccgcccagagttattgttctgtttggcctatcccgatcagtcgaccttagtgcgcttgaacaagatctcctgaagctattgtccgcagatggaactggtgttgtgtatccagcagttgcttcctcagaatataagttgagagcaacggttttaaaagcacctcatggtgatctcttggcatgtatggagatggccaagggtgctgatctgattgcttttggcacatctgcaagttcctctaatgaagaagattggtatatagatgcatttggatctcactgcctttcgatctttagagctcttggtcttcctagtacagcagtactgattcgtgatctacccagggagttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="20278" stop="17559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19978" g_stop="19838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19837" i_stop="19764" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19687" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="218" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19686" i_stop="19425" i_length="262">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19424" g_stop="19347" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="296" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19346" i_stop="18962" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18961" g_stop="18830" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="428" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18829" i_stop="18139" i_length="691">
            <donor d_prob="0.108" d_score="0.98"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18138" g_stop="18088" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="479" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18087" i_stop="17995" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17994" g_stop="17860" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="614" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="17753" i_length="107">
            <donor d_prob="0.121" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17752" g_stop="17730" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="637" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E578369" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19978" e_stop="19838"/>
          <exon e_start="19763" e_stop="19687"/>
          <exon e_start="19424" e_stop="19347"/>
          <exon e_start="18961" e_stop="18830"/>
          <exon e_start="18138" e_stop="18088"/>
          <exon e_start="17994" e_stop="17860"/>
          <exon e_start="17752" e_stop="17730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGTTAGAAGAAAAATTGATTGCTGTTTACTCAATCGTAGAGAAGATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCGCAATGTTCATAAAGTTTCTTCAAAAGGTTCAATTTTTTTTTCTATTAATTGTGTTATTTTGCTTAATTTATGTATTGATTGTCTTTTTGGTTACGTTTAGATAAGAGTAGAATTGCGAAACCTGATCGCAATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATGGTAAATTTTTGGTATCAATTTTTTATGTTTAGCTGACTCTTAACTAGTTTGGGATTGATTTTTTAGTTGTAGAAGTAAGAAAAAGTACTGCATTCTGTTTTATTGAGTTATCGTGTAGTGTGGTATGTGGATAAGGTGAAATATCCTGGTTATGAGGTGGGTTAAATTAGTCCAGTATTTGTGATTGCACGACTATAATGCCAGGATAATTTTGTCAACCAAACTACTTATTGTTATATGCTAAAAAAATGCAATTTTGTAGATGAGGGAGCAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATTGTAAGTATTCTTCTTTGTTTTTATTGTTTCTCTCTTCATTTTTGGATTCCTATATAATGATCCCGGACATAATGTTGGACATGAAGAATAAAATAAGAAAAGTTTTTTCTTTGCTTAATTTTTCAAATTTTCTTAGGATTTGGTCTATTTCCATACATTTAACTAAGAACAACTACAAATAATTTCAAATTGGAAAAAAAATTAAAAGATCAAGTCATCAATGGAAAACTTTTTTGGATTGTTGAATGAAAAGATTTAATTAGTAATCTTGAATTGATGTTAAAGCAGTTATTATAAGTAATCCGACTCCATGATCAGCTGGAGTGAAGGAGAAGGAAGATATCTGTTATCACGCATCAGTTCCTGACAATTTTTTATGTGACAGGTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACGGTAGGAGTGCATTGTGGGAACTCCCTTTATCAATTAAGTACTATACTTGCATTATTGAATTGGTCTCAGGTTCTAATTTTGGTGAAAGTATCATATAATGAGTAAACAGAAACAGAAGCTTTTGCATCTCTGCAAACATAGTTTTGTCAAGTACAATCAATAAATCAATAATGTTTAGAGGACTTATGCCTTAACCTTGGTAATCAACTGACTTCAGACACTTGATTAACTTCAGGATGGTAAAGTAATATGTCCGATTTTTCTTTCAATAAGTAAAACACATCACTGAATAGTATTAAGAAGATTCTGAAATACAGAGTTCGAAAAGCAAAATGTGAGTTTCTTTTTCTAATCTATAATAGAACTTCAGCAAGATAGGGAAGTCATTTATGGGACTATAAGCTTTAATAGTACATTATAGGATAGGAGGAGCTTTGACTGCACTTAAGAGTATGAGTAAGAGGATGCTAGGTTCAGGTATGTGTTTGCCATACCAAAATGCCAGAGAAAATCTTATTTACTCTTATGAATTTTTCATATCACAATTTTTTTGGTGTCAAATCTGATGCCAGAAGCAGCATACAGTAAATTGTTTGTCAGTTATTGATAATTGAGTAGTTTTCCTTGCTTTGACTTGTACGTTCTTCACAGAAAGTTCTGCAGAAGTTTAACAGTAAGTTATTTTATCTAGGTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAGGTATGATATATGCCCTGAAGTATTTCCAGGTTTTGGTTGCTCTTACGTTCTTTGTATCAAGGATGATTTAGTTAGAAGCTTTGGCATTTGTAGGTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGTGTAAGAATTAAAGATACTTCTCTGGAAGGAAGTGCTTTTGTCATATTCTTGAGAATGGTAGATAATTAAGGAGTTGACACTTGAACATGTCTTTTTCTGTGTTTTAGGATCTACCCAGTGAGTTAAAAAA</genome_strand>
        <mrna_strand>GTTTATTGTTAGAAGAAAAATTGAGGGCTGTTTACTCAATCGTAGAGAAGATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCGCAATGTTCATAAAGTTTCTTCAAAAG..........................................................................ATAAGAGTAGAATTGCGAAACCTGATCGCAATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATG......................................................................................................................................................................................................................................................................ATGAGGGAGCAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATT.................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGGTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAG.............................................................................................GGTGCTGATCTGATTGCTTTTGGCACATCTGCAAGTTCCTCTAATGAAGAAGATTGGTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGT...........................................................................................................GATCTACCCAGGGAGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351794" ref_strand="+" ref_description="SGN-E351794 [cTOS-8-P22]">
      <seq>cagattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtctctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgattctgtgatggtattctttgctgcccttgagatttagctagacagttttgagagagctagaaggtgaaaaaaagggcatgccaaaatattctttagctgtgtaatttattacctaatttctttttccctttgattctatatagaatgctagagcttagaaaggctcttgttgatgttgaattgttaacattgtttggttgagagtgtggatagataatatagatttttgtcatgtcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="22598" stop="21505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22298" g_stop="21806" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="508"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E351794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22298" e_stop="21806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</genome_strand>
        <mrna_strand>CAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357004" ref_strand="+" ref_description="SGN-E357004 [cTOS-22-I11]">
      <seq>cagattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtctctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgattctgtgatggtattctttgctgcccttgagatttagctagacagttttgagagagctagaaggtgaaaaaaagggcatgccaaaatattctttagctgtgtaatttattacctaatttctttttccctttgattctatatagaatgctagagcttagaaaggctcttgttgatgttgaattgttaacattgtttggttgagagtgtggatagataatatagatttttgtcatgtcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="22598" stop="21505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22298" g_stop="21806" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="508"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E357004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22298" e_stop="21806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</genome_strand>
        <mrna_strand>CAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351958" ref_strand="+" ref_description="SGN-E351958 [cTOS-8-P16]">
      <seq>gattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtctctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgattctgtgatggtattctttgctgcccttgagatttagctagacagttttgagagagctagaaggtgaaaaaaagggcatgccaaaatattctttagctgtgtaatttattacctaatttctttttccctttgattctatatagaatgctagagcttagaaaggctcttgttgatgttgaattgttaacattgtttggttgagagtgtggatagataatatagatttttgtcatgtcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="22596" stop="21505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22296" g_stop="21806" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="506"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E351958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22296" e_stop="21806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</genome_strand>
        <mrna_strand>GATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696134" ref_strand="+" ref_description="SGN-E696134 [LH_Ea08F12](-)">
      <seq>gaatggaggctctatttatgccatatgatcacaagaacacgactccggaaggattaccttctcagagaatgagattaatgcttgaaaagttgaatcgttttcagctgaatgatcgttgcttggttggatctggcggaggctctgtcgggtatctagctcacgggacagcaactgattacatgtatgatattgcaagagtgcccatgtctttcaccttcgagatctatggtgatagcacggcctcgtcaaaggactgctttaagatgttcaatcccactgacatcactacttttaatagagttctcaacgactggtctgctgcattttttacgctattcagtttgggtggagtccagattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtttctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgatactgtgatggtattctttgctgcccttgagatttagctagacagttttgagagagctagaaggtgaaaaaaagggcatgccaaaatattctttagctgtgtaatttattacctaatttctttttccctttgtttctatatagaatgctagagcttagaaaggctcttgttgatgttgaattgttaacattgtttgattgagagtgtggatagataatatagattttgccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="23645" stop="21512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23343" g_stop="23204" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="148" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22889" g_stop="22817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="221" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22694" g_stop="22620" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="296" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22355" g_stop="21816" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="836" r_length="540" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="839" polyA_stop="853"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E696134" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23343" e_stop="23204"/>
          <exon e_start="22889" e_stop="22817"/>
          <exon e_start="22694" e_stop="22620"/>
          <exon e_start="22355" e_stop="21816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTGAGAAGGGAACATAAGTGTATTCCTGTTAGATATATGCAATATGCTTGTTGTTTATCTAGCAGTGAATGTATTTTCTATTACTGCATGTTAAGCCACTTATGGATAAAAGAATAATGATAAAGTCACATCACAGTGTTAGGCATGAAAAACATGCACATCTGATGCCTTCCTCTGTTTGAAGTAGATATTAGGGTCACCATTTCTTTATTATGTAGTTTTAGATGTAAGTTTTCGTTACCTCAAGTATAACATTACGTCACTTATTCAGGTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAGGTTTGTCTTTGCATTTTATCAATCAATATACAGTAAAGTCCTTGCTCAATGTCAAGCATCTTTTTAGTGATAATGCAATGTCCGATAATGTATACATGATGCATGCATCTATTGGTTGGCAGATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAATGTAAGTTATACCCTCTGTTCCATTTTATGTAATACTCTTTCCTTTTTAGTCTGTTTCGAAAAAGGATGATTGAAACAATTTAACTTTAAATTTCGCACTTTACCCTTAATAACATGATTTTGTAGCCACAAAATTCTTCAACTCCATACACAATCAAACACCTTCACTCAAAATGCATGAAGGGGACATTTCGTAGATGATGCATTATCTTTGCTATGTGTCTTGTCATGTCAAACACTCAGCCATATTCACTTTGAATTGCAGAGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTT</genome_strand>
        <mrna_strand>GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGAATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG..........................................................................................................................................................................................................................................................................................................................GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG..........................................................................................................................ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT........................................................................................................................................................................................................................................................................AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTATTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTTTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATACTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGTTTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGATTGAGAGTGTGGATAGATAATATAGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379150" ref_strand="+" ref_description="SGN-E379150 [TUS-3-P3](-)">
      <seq>ggaaaatatgtgcatcatttgaaccacatgtatgggttaacgtgcattctggaatggaggctctatttatgccatatgatcacaagaacacgactccggaaggattaccttctcagaggatgagattaatgcttgaaaagttgaatcgttttcagctgaatgatcgttgcttggttggatctggcggaggctctgtcgggtatctagctcacgggacagcaactgattacatgtatgatattgcaagagtgcccatgtctttcaccttcgagatctatggtgatagcacggcctcgtcaaaggactgctttaagatgttcaatcccactgacatcactacttttaatagagttctcaacgactggtctgctgcattttttacgctgttcagtttgggtggagtccagattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtctctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgattctgtgatggtattctttgctgcccttgagatttagctagacagttttgggagagctagaaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="24214" stop="21677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23914" g_stop="23856" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23343" g_stop="23204" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="199" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22889" g_stop="22817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="272" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22694" g_stop="22620" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="347" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22355" g_stop="21977" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="726" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E379150" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23914" e_stop="23856"/>
          <exon e_start="23343" e_stop="23204"/>
          <exon e_start="22889" e_stop="22817"/>
          <exon e_start="22694" e_stop="22620"/>
          <exon e_start="22355" e_stop="21977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAGGCAAGTATACTTTTGTTAGTATGTCTTGCTGCTGTTTGTCTTCTGAACTTCTCTGCATATATAAAACATACCATTTACAAGCTTTCCCCATAACTCTTTTTAAAATTTAGGGCATAGAGGAGTCCTACGACCTTGTAGGACTCTCCTAGACATTTTGCAAGGTGCAGCTCCTTTTAATAGATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAACTACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAATTTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGTCAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTTTTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTTATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATACTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTGAGAAGGGAACATAAGTGTATTCCTGTTAGATATATGCAATATGCTTGTTGTTTATCTAGCAGTGAATGTATTTTCTATTACTGCATGTTAAGCCACTTATGGATAAAAGAATAATGATAAAGTCACATCACAGTGTTAGGCATGAAAAACATGCACATCTGATGCCTTCCTCTGTTTGAAGTAGATATTAGGGTCACCATTTCTTTATTATGTAGTTTTAGATGTAAGTTTTCGTTACCTCAAGTATAACATTACGTCACTTATTCAGGTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAGGTTTGTCTTTGCATTTTATCAATCAATATACAGTAAAGTCCTTGCTCAATGTCAAGCATCTTTTTAGTGATAATGCAATGTCCGATAATGTATACATGATGCATGCATCTATTGGTTGGCAGATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAATGTAAGTTATACCCTCTGTTCCATTTTATGTAATACTCTTTCCTTTTTAGTCTGTTTCGAAAAAGGATGATTGAAACAATTTAACTTTAAATTTCGCACTTTACCCTTAATAACATGATTTTGTAGCCACAAAATTCTTCAACTCCATACACAATCAAACACCTTCACTCAAAATGCATGAAGGGGACATTTCGTAGATGATGCATTATCTTTGCTATGTGTCTTGTCATGTCAAACACTCAGCCATATTCACTTTGAATTGCAGAGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGA</genome_strand>
        <mrna_strand>GGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG..........................................................................................................................................................................................................................................................................................................................GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG..........................................................................................................................ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT........................................................................................................................................................................................................................................................................AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGGGAGAGCTAGAAGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379877" ref_strand="+" ref_description="SGN-E379877 [TUS-3-P3]">
      <seq>tcaaaacaaagggtatcatgcagagacgactgtagttacttattgccggaacaagaaagactgcgatgacagataaattgcttgtgttccagagttttgggcagcatgggagggagctcataactacggagcttgcgttgcggattctttccattttaagtgaagaggaattcttatccagtgcatacccacttaatttaaataacacgcttgataggcttgtcataaaggttgttccaatggagaatgtgaatgggcgtaaacttgtagaagcaggggatctctgtgaaagaagaaatggaagaggagttgatcttaatcggaattggagtgtggattggggcaagaaagagaaggattatgatccatatgaagaaaatcctgggtccgccccttttagtgagcccgagacacaaattatgcggaaaatatgtgcatcatttgaaccacatgtatgggttaacgtgcattctggaatggaggctctatttatgccatatgatcacaagaacacgactccggaaggattaccttctcagaggatgagattaatgcttgaaaagttgaatcgttttcagctgaatgatcgttgcttggttggatctggcggaggctctgtcgggtatctagctcacgggacagcaactgattacatgtatgatattgcaagagtgcccatgtctttcaccttcgagatctatggtgatagcacggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="25957" stop="22375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25586" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25318" g_stop="25161" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="230" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24459" g_stop="24390" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="300" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24299" g_stop="24244" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="356" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23981" g_stop="23856" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="482" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23343" g_stop="23204" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="622" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22889" g_stop="22817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="695" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22694" g_stop="22675" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="715" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E379877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25586"/>
          <exon e_start="25318" e_stop="25161"/>
          <exon e_start="24459" e_stop="24390"/>
          <exon e_start="24299" e_stop="24244"/>
          <exon e_start="23981" e_stop="23856"/>
          <exon e_start="23343" e_stop="23204"/>
          <exon e_start="22889" e_stop="22817"/>
          <exon e_start="22694" e_stop="22675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTTGTAAGTTTACTTTCTTTGGTCCGTTATTACCTTTATTCATGTCCTGTAGAATGGAAATATATGTTGTATTACCTTCCCAGGGTTTCCTAGTTAAGATAGTTAACTCACGAGGAAAAAGGAGAGAGGAGGGGAAGTAGAGTGGTTTCTTTGAAAAGACATTGGGAAAATGCTTTTCCAGACATTATACTGATTTGGTCTTTAGTGTTAGAAAATCTCAGATTGGTCATTGCTGGTGTTTTTGACAGATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAGGTAACTCCTAGTCTATTTGGAACTCACAGTCAAATAAGGTGAAAATAATTCATGTATATGTTTTATGAATCTATAAGTTGTTGAATCAGAAAAATTTTAACCACTCCTAATTGAACAGGATCTATATTTACATTCATCCCCTCTTCAAATGTTTAGTTCCTCAGCTCTTTTAGTACCCTTCAAAAATATCCTGCAGAACTTCTTTTATTTTAAGGTTCTTCCATTGTCCACACCTGCTGATGTTGGTGTGATTTTGTTATCCCATCCTCCAATGTACTGAAGCAGTTTGTCTAGGAGATTCTAAATTAGCCATTTTCTGAAGATTTCCCTGCACAATGCAAAACATTTTTTTTGGCAGAGACAGATTAACCTTTCACACAGCTCTCATAGAGAGAGCTCGCTGTCTCAAATTTAGCGTATTGATTTCTCTGTTTTGTCAGACATCAGTAAACATCTTTCAAGTTGTTTTCTAGCTGCAGGTTGTTCATTCAGCTCAGTAAATTCGTTTTAGTCACTGTTTGCTTTTTAAATCTATCAGGTCCTGCTGGTATAGAAATTCAAAATTCACCCAATTAATTAGTTCACTGTATGCCATGGGCTGTAAATAGTTAAAGAAACAAAGATCTTTATCACTTTAAAGAGTATCCAAATTCTCTTTTAAACTAATGTTACTGGGGAATGCTTTTTAATCCGTCTAACAGGTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATGGTATAGCTATTTATCTTGCTAGTCTGATCACAGAAATTGACTCTATAGGGAAGTACCAAGAAAATTATTTCCAACCCTTTTTTTTGGCAGGAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAGGTTTATTCTTTAGACTGCCATTAGTAGACGATTCATTGTGTTTCGATCATGTGTGTCTTCTTTACTGATGTATGGACAGGTTGTGTTCCTTTTATATAGGTTGTTACTTATGCATCTTGTGGTGCTTAAGTAATATTTGCACTTAGTACCAAATTAGGATTGCTTTACTGGATCTTGTGTATATGCTGTTTGTGTTTACTAGTTCAAGCTGATGCAGCTATGTGCTTATACAACTCTTGTCCCTTTGATCTTTACTTTTCAGGATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAGGCAAGTATACTTTTGTTAGTATGTCTTGCTGCTGTTTGTCTTCTGAACTTCTCTGCATATATAAAACATACCATTTACAAGCTTTCCCCATAACTCTTTTTAAAATTTAGGGCATAGAGGAGTCCTACGACCTTGTAGGACTCTCCTAGACATTTTGCAAGGTGCAGCTCCTTTTAATAGATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAACTACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAATTTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGTCAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTTTTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTTATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATACTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTGAGAAGGGAACATAAGTGTATTCCTGTTAGATATATGCAATATGCTTGTTGTTTATCTAGCAGTGAATGTATTTTCTATTACTGCATGTTAAGCCACTTATGGATAAAAGAATAATGATAAAGTCACATCACAGTGTTAGGCATGAAAAACATGCACATCTGATGCCTTCCTCTGTTTGAAGTAGATATTAGGGTCACCATTTCTTTATTATGTAGTTTTAGATGTAAGTTTTCGTTACCTCAAGTATAACATTACGTCACTTATTCAGGTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAGGTTTGTCTTTGCATTTTATCAATCAATATACAGTAAAGTCCTTGCTCAATGTCAAGCATCTTTTTAGTGATAATGCAATGTCCGATAATGTATACATGATGCATGCATCTATTGGTTGGCAGATCTATGGTGATAGCACGGC</genome_strand>
        <mrna_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG...........................................................................................................................................................................................................................................................................ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG..........................................................................................GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG......................................................................................................................................................................................................................................................................GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG..........................................................................................................................................................................................................................................................................................................................GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG..........................................................................................................................ATCTATGGTGATAGCACGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210106" ref_strand="+" ref_description="SGN-E210106 [cLEC-40-D9]">
      <seq>tcaaaacaaagggtatcatgcagagacgactgtagttacttattgccggaacaagaaagactgcgatgacagataaattgcttgtgttccagagttttgggcagcatgggagggagctcataactacggagcttgcgttgcggattctttccattttaagtgaagaggaattcttatccagtgcatacccacttaatttaaataacacgcttgataggcttgtcataaaggttgttccaatggagaatgtgaatgggcgtaaacttgtagaagcaggggatctctgtgaaagaagaaatggaagaggagttgatcttaatcggaattggagtgtggattggggcaagaaagagaaggattatgatccatatgaagaaaatcctgggtccgccccttttagtgagcccgagacacaaattatgcggaaaatatgtgcatcatttgaaccacatgtatgggttaacgtgcattctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="25957" stop="23560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25586" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25318" g_stop="25161" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="230" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24459" g_stop="24390" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="300" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24299" g_stop="24244" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="356" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23981" g_stop="23860" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="478" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E210106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25586"/>
          <exon e_start="25318" e_stop="25161"/>
          <exon e_start="24459" e_stop="24390"/>
          <exon e_start="24299" e_stop="24244"/>
          <exon e_start="23981" e_stop="23860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTTGTAAGTTTACTTTCTTTGGTCCGTTATTACCTTTATTCATGTCCTGTAGAATGGAAATATATGTTGTATTACCTTCCCAGGGTTTCCTAGTTAAGATAGTTAACTCACGAGGAAAAAGGAGAGAGGAGGGGAAGTAGAGTGGTTTCTTTGAAAAGACATTGGGAAAATGCTTTTCCAGACATTATACTGATTTGGTCTTTAGTGTTAGAAAATCTCAGATTGGTCATTGCTGGTGTTTTTGACAGATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAGGTAACTCCTAGTCTATTTGGAACTCACAGTCAAATAAGGTGAAAATAATTCATGTATATGTTTTATGAATCTATAAGTTGTTGAATCAGAAAAATTTTAACCACTCCTAATTGAACAGGATCTATATTTACATTCATCCCCTCTTCAAATGTTTAGTTCCTCAGCTCTTTTAGTACCCTTCAAAAATATCCTGCAGAACTTCTTTTATTTTAAGGTTCTTCCATTGTCCACACCTGCTGATGTTGGTGTGATTTTGTTATCCCATCCTCCAATGTACTGAAGCAGTTTGTCTAGGAGATTCTAAATTAGCCATTTTCTGAAGATTTCCCTGCACAATGCAAAACATTTTTTTTGGCAGAGACAGATTAACCTTTCACACAGCTCTCATAGAGAGAGCTCGCTGTCTCAAATTTAGCGTATTGATTTCTCTGTTTTGTCAGACATCAGTAAACATCTTTCAAGTTGTTTTCTAGCTGCAGGTTGTTCATTCAGCTCAGTAAATTCGTTTTAGTCACTGTTTGCTTTTTAAATCTATCAGGTCCTGCTGGTATAGAAATTCAAAATTCACCCAATTAATTAGTTCACTGTATGCCATGGGCTGTAAATAGTTAAAGAAACAAAGATCTTTATCACTTTAAAGAGTATCCAAATTCTCTTTTAAACTAATGTTACTGGGGAATGCTTTTTAATCCGTCTAACAGGTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATGGTATAGCTATTTATCTTGCTAGTCTGATCACAGAAATTGACTCTATAGGGAAGTACCAAGAAAATTATTTCCAACCCTTTTTTTTGGCAGGAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAGGTTTATTCTTTAGACTGCCATTAGTAGACGATTCATTGTGTTTCGATCATGTGTGTCTTCTTTACTGATGTATGGACAGGTTGTGTTCCTTTTATATAGGTTGTTACTTATGCATCTTGTGGTGCTTAAGTAATATTTGCACTTAGTACCAAATTAGGATTGCTTTACTGGATCTTGTGTATATGCTGTTTGTGTTTACTAGTTCAAGCTGATGCAGCTATGTGCTTATACAACTCTTGTCCCTTTGATCTTTACTTTTCAGGATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAAT</genome_strand>
        <mrna_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG...........................................................................................................................................................................................................................................................................ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG..........................................................................................GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG......................................................................................................................................................................................................................................................................GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692294" ref_strand="+" ref_description="SGN-E692294 [LH_Ea08F12]">
      <seq>agaaagaccaagcaatcatagccgttgaatctctacaaatcaacgacgccctgaccactgtcgtcttcttccccatcactgccggcatatcttttctttcacaattcctatgtttttaaagttttgggattgtcaaagaaaccaaaaagatttgaaatagtcgagaaaaaaagagacatttgggttgaatcaaacaacacaaatcaccggatgttggtgtatttatctgtaatttaaatggggttgcgtcgtcgccggcgtttgtattctttacccgtttcgccattagtcttgtttggagttgtgttgattgttctgtgttcttcgtttgtaaatggaaattcgaattccacgcaaatacctattactcccatcaatcacgatctctatcatacaaggggagctttgttggaagagatagaatcattggtccatagacacccaagcaagctctctatggagacattttccactcaaaacaaagggtatcatgcagagacgactgtagttacttattgccggaacaagaaagactgtgatgacaggtcaaagcttaagatccttcttagttttgggcagcatgggagggagctaataactacggagcttgcgttgcggattctttccattttaagtgaagaggaattcttatccagtgcatacccacttaatttaaataacacgcttgataggcttgtcataaaggttgttccaatggagaatgtgaatgggcgtaaacttgtagaagcaggggatctctgtgaaagaagaaatggaagaggagttgatcttaatcggaattggagtgtggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="27135" stop="23960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26835" g_stop="26435" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26434" i_stop="25842" i_length="593">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25841" g_stop="25784" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="456" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25783" i_stop="25675" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25674" g_stop="25564" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="567" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25563" i_stop="25299" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25298" g_stop="25161" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="705" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24459" g_stop="24390" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="775" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24299" g_stop="24260" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="815" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E692294" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26835" e_stop="26435"/>
          <exon e_start="25841" e_stop="25784"/>
          <exon e_start="25674" e_stop="25564"/>
          <exon e_start="25298" e_stop="25161"/>
          <exon e_start="24459" e_stop="24390"/>
          <exon e_start="24299" e_stop="24260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGACCAAGCAATCATAGCCGTTGAATCTCTACAAATCAACGACGCCCTGACCACTGTCGTCTTCTTCCCCATCACTGCCGGCATATATCTTTTCTTTCACAATTCCTATGTTTTTAAAGTTTTGGAATTGTCAAAGAAACCAAAAAGATTTGAAATAGTCGAGAAAAAAAAAAGACATTTGGGTTGAATCAAACAACAAAAATCACCGGATGTTGGTGTATTTATCTGTAATTTAAATGGGGTTGCGTCGTCGCCGGCGTTTGTATTCTTTACCCGTTTCGCCATTAGTCTTGTTTGGAGTTGTGTTGATTGTTCTGTGTTCTTCGTTTGTAAATGGAAATTCGAATTCCACGCAAATACCTATTACTCCCATCAATCACGATCTCTATCATACAAGGTAAGAATTTGAGCTTTTTTTGAATTTCGATTTGTGATCTAATTTGGGTAGTGATTTGTGGTAACTAGGATTACTGAATGTTGTAATTAGGTTAGTATTTGAATTACTTAAGAGTGGAAATGAACTTTTATGGAAAGGTTGTGCAATTAATTCAAGTTTGATAGAACTATATTGAGAAAGGTGAGAACTTTCTTCTTTTCTTTTTGCATCAGTGTTCTGTATTTTCGGAATTTAATGACTATAAAGGATTCATAGGGCCGACTCGAACTGATTTAGGATTGAGTGTAACAGATTGATTTGGGACTTAATGAAGTTGGGGTAGGAGGTTCTAGCTCACAATGAATTATTGGTGATGTTAATGAATGTGAGTAGCTTAACATCTTATTTGACTGATGAAGTGAATCTTTATAGATATTAGTGTGCTAAGGCTGTATGAGAGGCTCAATTTTGATTGCTGAACTTTATATGTTATGGATCAAGAAAGGTCCTCACTCGCTCTACTGCTTTTCGGCTTTAGTTTTTACTGTGAAATGGGAGGTGGAATGAGGTGATTTGTGCTTCGATTTTCAACATTAATTTATGGTGTCTTCTAGGGGAGCTTTGTTGGAAGAGATAGAATCATTGGTCCATAGACACCCAAGCAAGCTCTCTGTGAGTTTTCCCCTATCTCATACCTTTTTAAATTTTTGTTTTGGGAAAATTGGAACTACAGAAATATGCATCTTCTCTTAATATCTCAACTTAATTCATATTTATGCAGATGGAGACATTTTCCACTCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTTGTAAGTTTACTTTCTTTGGTCCGTTATTACCTTTATTCATGTCCTGTAGAATGGAAATATATGTTGTATTACCTTCCCAGGGTTTCCTAGTTAAGATAGTTAACTCACGAGGAAAAAGGAGAGAGGAGGGGAAGTAGAGTGGTTTCTTTGAAAAGACATTGGGAAAATGCTTTTCCAGACATTATACTGATTTGGTCTTTAGTGTTAGAAAATCTCAGATTGGTCATTGCTGGTGTTTTTGACAGATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAGGTAACTCCTAGTCTATTTGGAACTCACAGTCAAATAAGGTGAAAATAATTCATGTATATGTTTTATGAATCTATAAGTTGTTGAATCAGAAAAATTTTAACCACTCCTAATTGAACAGGATCTATATTTACATTCATCCCCTCTTCAAATGTTTAGTTCCTCAGCTCTTTTAGTACCCTTCAAAAATATCCTGCAGAACTTCTTTTATTTTAAGGTTCTTCCATTGTCCACACCTGCTGATGTTGGTGTGATTTTGTTATCCCATCCTCCAATGTACTGAAGCAGTTTGTCTAGGAGATTCTAAATTAGCCATTTTCTGAAGATTTCCCTGCACAATGCAAAACATTTTTTTTGGCAGAGACAGATTAACCTTTCACACAGCTCTCATAGAGAGAGCTCGCTGTCTCAAATTTAGCGTATTGATTTCTCTGTTTTGTCAGACATCAGTAAACATCTTTCAAGTTGTTTTCTAGCTGCAGGTTGTTCATTCAGCTCAGTAAATTCGTTTTAGTCACTGTTTGCTTTTTAAATCTATCAGGTCCTGCTGGTATAGAAATTCAAAATTCACCCAATTAATTAGTTCACTGTATGCCATGGGCTGTAAATAGTTAAAGAAACAAAGATCTTTATCACTTTAAAGAGTATCCAAATTCTCTTTTAAACTAATGTTACTGGGGAATGCTTTTTAATCCGTCTAACAGGTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATGGTATAGCTATTTATCTTGCTAGTCTGATCACAGAAATTGACTCTATAGGGAAGTACCAAGAAAATTATTTCCAACCCTTTTTTTTGGCAGGAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTG</genome_strand>
        <mrna_strand>AGAAAGACCAAGCAATCATAGCCGTTGAATCTCTACAAATCAACGACGCCCTGACCACTGTCGTCTTCTTCCCCATCACTGCCGGC--ATATCTTTTCTTTCACAATTCCTATGTTTTTAAAGTTTTGGGATTGTCAAAGAAACCAAAAAGATTTGAAATAGTCGAG-AAAAAAAGAGACATTTGGGTTGAATCAAACAACACAAATCACCGGATGTTGGTGTATTTATCTGTAATTTAAATGGGGTTGCGTCGTCGCCGGCGTTTGTATTCTTTACCCGTTTCGCCATTAGTCTTGTTTGGAGTTGTGTTGATTGTTCTGTGTTCTTCGTTTGTAAATGGAAATTCGAATTCCACGCAAATACCTATTACTCCCATCAATCACGATCTCTATCATACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTTTGTTGGAAGAGATAGAATCATTGGTCCATAGACACCCAAGCAAGCTCTCT.............................................................................................................ATGGAGACATTTTCCACTCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGTGATGACAGGTCAAAGCTTAAGATCCTTCTT.........................................................................................................................................................................................................................................................................AGTTTTGGGCAGCATGGGAGGGAGCTAATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG..........................................................................................GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229903" ref_strand="+" ref_description="SGN-E229903 [cLEL-33-K5](-)">
      <seq>cgttcacctgggactccaaagtgcctgctttgcgtcccctttggatttatctcagcaatcacatcagttgcggaaaatgctgaactgaaaaaaaaaaaaaactgcaagacaattaaaacgggatttgggttaatcctggatcacccccgattttggttaccccatcattctgataacaaaacgggactccccttggcccccttacatgtagaagtataacccttttaattgtaagccccctgaatggttttgggctgtgtcatattcagtatgctaaggttgtctatatagcataggcattggaaacaaaaccttttgtgacaatgaacttaacatggtctattgattttgaatgttttaggtgatttggtgttgnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="31295" stop="32273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31595" g_stop="31972" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="412"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E229903" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31595" e_stop="31972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCACCTGGGACTCCAAAGTGCTTGCTTTGCGTCCACTTTGGATTTATCTCAGCAATCACATCAGTTGCGGAAATTGCTGAACTGAAAAAAAAGAAGAGCTGCAAGACAATTAAAACGGGATTTGGGTTAATCTTGTATCACCGCCGATTTTGGTTACCCCATCATTCTGATAACAAAACGGGACTCCACTTGGCACCATTACATGTAGAAGTATAACTCTTTTAATTGTATGCTCTCTGAATGGTTTTGGTCTGTGTCATATTCAGTATGCTAAGGTTGTCTATATAGCATAGGCATTGGAAACAAAACTTTTTGTGACAATGAACTTAACATGGTCTATTGATTTTGAATGTTTTAGGTGATTTGGTGTTGGAG</genome_strand>
        <mrna_strand>CGTTCACCTGGGACTCCAAAGTGCCTGCTTTGCGTCCCCTTTGGATTTATCTCAGCAATCACATCAGTTGCGGAAAATGCTGAACTGAAAAAAAAAAAAAACTGCAAGACAATTAAAACGGGATTTGGGTTAATCCTGGATCACCCCCGATTTTGGTTACCCCATCATTCTGATAACAAAACGGGACTCCCCTTGGCCCCCTTACATGTAGAAGTATAACCCTTTTAATTGTAAGCCCCCTGAATGGTTTTGGGCTGTGTCATATTCAGTATGCTAAGGTTGTCTATATAGCATAGGCATTGGAAACAAAACCTTTTGTGACAATGAACTTAACATGGTCTATTGATTTTGAATGTTTTAGGTGATTTGGTGTTGNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235385" ref_strand="+" ref_description="SGN-E235385 [cLED-11-P21]">
      <seq>aaaattttgatgttttagtgccacaagttccattgcttatgctggctgctaaaggggatgatgattatcgagaattctactctctttccaagaggaaaatttctcgcagaattttcctcccagaagctagagggaaactctgtttaccaacacagggatggcttttcacggtgaactatagagcatttacaggagagatgactttgttgcaccctttctcacgcgtccaaattcagcttcctccgcctactggcttgagagatgaggaatcaaaacgtccctacgtgactatcaaccatgttgtattatctgctagcccatccgtaacaactgactatgttctgataatttgctatggacggcctacataccgtttggctctttggcgacctggagacctctgttggaccaaaattcctactctcgaagaaacttatgcatattaccatatgatccaatacttcaatggacaactttatatcaacaaagggcggtggctagtttcagctattgacatcccagagcctagtaatcctcagcctattgtaaaacaacgagaggttgttcagatggtgggtttatcgaatcacacaaaccagtccgctcactttctcattgaagtgtcaggtgaactattatttgttcaacaattgatgattgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="32213" stop="33476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32513" g_stop="33176" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E235385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32513" e_stop="33176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAACCAGTCCGCTCACTTTCTCATTGAAGTGTCAGGTGAACTATTATTTGTTCAACAATTGATGATTGTGAA</genome_strand>
        <mrna_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAACCAGTCCGCTCACTTTCTCATTGAAGTGTCAGGTGAACTATTATTTGTTCAACAATTGATGATTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232035" ref_strand="+" ref_description="SGN-E232035 [cLED-7-M24]">
      <seq>aaaattttgatgttttagtgccacaagttccattgcttatgctggctgctaaaggggatgatgattatcgagaattctactctctttccaagaggaaaatttctcgcagaattttcctcccagaagctagagggaaactctgtttaccaacacagggatggcttttcacggtgaactatagagcatttacaggagagatgactttgttgcaccctttctcacgcgtccaaattcagcttcctccgcctactggcttgagagatgaggaatcaaaacgtccctacgtgactatcaaccatgttgtattatctgctagcccatccgtaacaactgactatgttctgataatttgctatggacggcctacataccgtttggctctttggcgacctggagacctctgttggaccaaaattcctactctcgaagaaacttatgcatattaccatatgatccaatacttcaatggacaactttatatcaacaaagggcggtggctagtttcagctattgacatcccagagcctagtaatcctcagcctattgtaaaacaacgagaggttgttcagatggtgggtttatcgaatcacacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="32213" stop="33407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32513" g_stop="33107" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E232035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32513" e_stop="33107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAA</genome_strand>
        <mrna_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244505" ref_strand="+" ref_description="SGN-E244505 [cLED-38-G7]">
      <seq>aaaattttgatgttttagtgccacaagttccattgcttatgctggctgctaaaggggatgatgattatcgagaattctactctctttccaagaggaaaatttctcgcagaattttcctcccagaagctagagggaaactctgtttaccaacacagggatggcttttcacggtgaactatagagcatttacaggagagatgactttgttgcaccctttctcacgcgtccaaattcagcttcctccgcctactggcttgagagatgaggaatcaaaacgtccctacgtgactatcaaccatgttgtattatctgctagcccatccgtaacaactgactatgttctgataatttgctatggacggcctacataccgtttggctctttggcgacctggagacctctgttggaccaaaattcctactctcgaagaaacttatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="32213" stop="33253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32513" g_stop="32953" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E244505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32513" e_stop="32953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCAT</genome_strand>
        <mrna_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288901" ref_strand="+" ref_description="SGN-E288901 [cLES-17-C11]">
      <seq>aactgactatgttctgataatttgctatggacggcctacataccgtttggctctttggcgacctggagacctctgttggaccaaaattcctactcttgaagaaacttatgcatattaccatatgatccaatacttcaatggacaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="32541" stop="33290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32841" g_stop="32990" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E288901" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>150</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32841" e_stop="32990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTA</genome_strand>
        <mrna_strand>AACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTTGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226693" ref_strand="+" ref_description="SGN-E226693 [cLEL-26-G4](-)">
      <seq>acctaatcatatatattttacctatgattggacacgtgtgtaccccaaagaatatgattcaagaaaaataggggcttacaatgtcgaagatgaaaccattgaacccttgaatcaaggcatttctggttttaatattgtatccccggcgatttgggttaccccatcattctgatatcaaaatgcgttgtgagctttctctgaattgttttggttttgtgtgtcttttatatgttgtttgatgcaaaaaacagtttgttgatctcatgtgatcaattcttggtggtacaagttgatttggacaccaaatattacgaaatagattagacgttttcacttctattgcatttgacattaactgtttctgtattttttttatatttctttatcctcaactttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="33036" stop="34047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33336" g_stop="33755" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E226693" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33336" e_stop="33755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAATCATATATATTTTACCTATGATTGGACACGTGTGTACACCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTAACTGTTTCTGTATTTTTTTTATATTTCTTTATCCACAACTTTTTCTTATATAAACGAATCTAAATT</genome_strand>
        <mrna_strand>ACCTAATCATATATATTTTACCTATGATTGGACACGTGTGTACCCCAAAGAATATGATTCAAGAAAAATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTAACTGTTTCTGTATTTTTTTTATATTTCTTTATCCTCAACTTTTTCTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226821" ref_strand="+" ref_description="SGN-E226821 [cLEL-26-G4](-)">
      <seq>tggacacgtgtgtactccgaaggagatgattcaagagagataggggcttacaatgtcgaagatgaaaccattgaacccttgaatcaaggcatttctggttttaatattgtatccccggcgatttgggttaccccatcattctgatatcaaaatgcgttgtgagctttctctgaattgttttggttttgtgtgtcttttatatgttgtttgatgcaaaaaacagtttgttgatctcatgtgatcaattcttggtggtacaagttgatttggacaccaaatattacgaaatagattagacgttttcacttctattgcatttgacattacctgtttctgtatattctttatagttctttatcctcaactttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="33064" stop="34031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33364" g_stop="33754" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E226821" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33364" e_stop="33754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACACGTGTGTACACCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTAACTGTTTCTGTATTTTTTTTATATTTCTTTATCCACAACTTTTTCTTATATAAACGAATCTAAAT</genome_strand>
        <mrna_strand>TGGACACGTGTGTACTCCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTACCTGTTTCTGTATATTCTTTATAGTTCTTTATCCTCAACTTTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353835" ref_strand="+" ref_description="SGN-E353835 [cTOS-10-H9]">
      <seq>taaaactttccggagatttggctggccggaaaaaggtactacccctccctctattttccgtttggttagttgctcatcgtccatgatatttagctattaatgtgaaaaatggttcattccgtgttattaaccaatatgaatgaatctatacatccagttgttctctagctttcgatttaaaatagtttgaaagctttcaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="34910" stop="34106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34610" g_stop="34409" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="203" polyA_stop="213"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E353835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34610" e_stop="34409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTTTCCGGAGATTTGGCTGGCCGGAAAAAGGTACTACCCCTCCCTCTATTTTCCGTTTGGTTAGTTGCTCATCGTCCATGATATTTAGCTATTAATGTGAAAAATGGTTCATTCCGTGTTATTAACCAATATGAATGAATCTATACATCCAGTTGTTCTCTAGCTTTCGATTTAAAATAGTTTGAAAGCTTTCAAGT</genome_strand>
        <mrna_strand>TAAAACTTTCCGGAGATTTGGCTGGCCGGAAAAAGGTACTACCCCTCCCTCTATTTTCCGTTTGGTTAGTTGCTCATCGTCCATGATATTTAGCTATTAATGTGAAAAATGGTTCATTCCGTGTTATTAACCAATATGAATGAATCTATACATCCAGTTGTTCTCTAGCTTTCGATTTAAAATAGTTTGAAAGCTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543290" ref_strand="+" ref_description="SGN-E543290 [TUS-65-A12]">
      <seq>gagcgcttctccctactttagggccaaattcaaactcatctaaaaaaggacaaaaattgacaacaataaactattgccgtagaagaacgctcaaagcactaagccaaaaaaaaaacacaatttttttctcctctttcataattttccgccgcttattgaatcttgagttctgatttggttttcatgtccaagatgatgatgagatctagccgtaaacccccacttcctactagatctcctgttggaattcggaatcgtcgtgttcttcaatctactccaaacctcattcgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactggtggatgagaagaaaccagtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="37020" stop="39086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37320" g_stop="37620" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38496" g_stop="38786" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="593" r_length="292" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E543290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37320" e_stop="37620"/>
          <exon e_start="38496" e_stop="38786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAGGTATTTTGTATAATTAGTAGTAATACTGTGTATAGAGCTGGAAAGACTAAATTTTTGAGACCCCCTTTGCTTTGTTCGAGTTTTGTGCGTGTTGGAATGAAGAGAAATGGGTGTTGACTGTTGAATTTTGTATGATTAGTACTGTATTTAGAATTGGTAGACCAAAAGTTGAGACCCCGTTTGCTTTTTGAGTTTTTTTGTGTATTGGAATGAAGAGAAATGGGTGTTGACTGTTGAGTTTTGTATGATTAGTATTGTAGTTAGAGCTGGAAGACGAAAAAATTGAGCCTTTTTTTTTTTTGAGTTCTGTCTGTATTGGAATGAAGAGAAATGGGTGTTAACTATTGAGCTTTGTATAAGTACTGTATTTAGAGTTGGAAGGCAAATTTGAGACCCCTTTTATATTTTGTATGTATTGGGATGAAGAGAAACGAGTGACCGAGTTGGTTGAGCCTGGGATTTCCCTTAGGGTCCTGGGTTCCATATCACCTGTATGTGTTTCTAGGTCGAGCTTGTCACGCGGGGCTTTTGTTGCCTATTGCGGTTTATATTTCCTTTGTTGTTTGCGCACTAACAAAAGGGTAACAGCTGTGGTTCCCTTGTTATGAAAACAAAATGGGTGTTTGAGATTTGTTATATACCTGATTTAGGCTTAGTTGTTGTTATTGTGTTGTTCTTCTTTTCAGGTTTTTGAATATAATCAAGGAACAAGTGGATAGTTTTGAAAGAATTAGCTTAATTTTGAATTTAAACAGGGACAAACATCCATGCTTCGTATAGTAGTTGAAACTATTTGCAAAGTTTGAGAGCCCCCCTTAATCATCTCAATTTTGATGGTCTCTCTTTTTTTGGGCTAAATTTTAGATTGTATGCAGATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACT-GTGGATGAGAAGAAACCAGTGTATG</genome_strand>
        <mrna_strand>GAGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGGTGGATGAGAAGAAACCAGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303173" ref_strand="+" ref_description="SGN-E303173 [cLEX-5-D22]">
      <seq>agcgcttctccctactttagggccaaattcaaactcatctaaaaaaggacaaaaattgacaacaataaactattgccgtagaagaacgctcaaagcactaagccaaaaaaaaaacacaatttttttctcctctttcataattttccgccgcttattgaatcttgagttctgatttggttttcatgtccaagatgatgatgagatctagccgtaaacccccacttcctactagatctcctgttggaattcggaatcgtcgtgttcttcaatctactccaaacctcattcgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="37021" stop="39006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37321" g_stop="37620" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38496" g_stop="38706" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="511" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E303173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37321" e_stop="37620"/>
          <exon e_start="38496" e_stop="38706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAGGTATTTTGTATAATTAGTAGTAATACTGTGTATAGAGCTGGAAAGACTAAATTTTTGAGACCCCCTTTGCTTTGTTCGAGTTTTGTGCGTGTTGGAATGAAGAGAAATGGGTGTTGACTGTTGAATTTTGTATGATTAGTACTGTATTTAGAATTGGTAGACCAAAAGTTGAGACCCCGTTTGCTTTTTGAGTTTTTTTGTGTATTGGAATGAAGAGAAATGGGTGTTGACTGTTGAGTTTTGTATGATTAGTATTGTAGTTAGAGCTGGAAGACGAAAAAATTGAGCCTTTTTTTTTTTTGAGTTCTGTCTGTATTGGAATGAAGAGAAATGGGTGTTAACTATTGAGCTTTGTATAAGTACTGTATTTAGAGTTGGAAGGCAAATTTGAGACCCCTTTTATATTTTGTATGTATTGGGATGAAGAGAAACGAGTGACCGAGTTGGTTGAGCCTGGGATTTCCCTTAGGGTCCTGGGTTCCATATCACCTGTATGTGTTTCTAGGTCGAGCTTGTCACGCGGGGCTTTTGTTGCCTATTGCGGTTTATATTTCCTTTGTTGTTTGCGCACTAACAAAAGGGTAACAGCTGTGGTTCCCTTGTTATGAAAACAAAATGGGTGTTTGAGATTTGTTATATACCTGATTTAGGCTTAGTTGTTGTTATTGTGTTGTTCTTCTTTTCAGGTTTTTGAATATAATCAAGGAACAAGTGGATAGTTTTGAAAGAATTAGCTTAATTTTGAATTTAAACAGGGACAAACATCCATGCTTCGTATAGTAGTTGAAACTATTTGCAAAGTTTGAGAGCCCCCCTTAATCATCTCAATTTTGATGGTCTCTCTTTTTTTGGGCTAAATTTTAGATTGTATGCAGATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGA</genome_strand>
        <mrna_strand>AGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339985" ref_strand="+" ref_description="SGN-E339985 [cTOF-3-G19]">
      <seq>tttttttctcctctttataattttccgccgcttattgaatcttgagttctgatttggttttcatgtccaagatgatgatgagatctagccgtaaacccccacttcctactagatctcctgttggaattcggaatcgtcgtgttcttcaatctactccaaacctcattcgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaattttcagattagggtgtttgatgtttgaagtacaacgaagaggctatgtagctgatagcttcagttcactttcatggctgattgtaatatgaattttcttttttgcattgcttatcgttaagtttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="37140" stop="39555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37440" g_stop="37620" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38496" g_stop="38671" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="356" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38672" i_stop="38984" i_length="313">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38985" g_stop="39255" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="627" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E339985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37440" e_stop="37620"/>
          <exon e_start="38496" e_stop="38671"/>
          <exon e_start="38985" e_stop="39255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAGGTATTTTGTATAATTAGTAGTAATACTGTGTATAGAGCTGGAAAGACTAAATTTTTGAGACCCCCTTTGCTTTGTTCGAGTTTTGTGCGTGTTGGAATGAAGAGAAATGGGTGTTGACTGTTGAATTTTGTATGATTAGTACTGTATTTAGAATTGGTAGACCAAAAGTTGAGACCCCGTTTGCTTTTTGAGTTTTTTTGTGTATTGGAATGAAGAGAAATGGGTGTTGACTGTTGAGTTTTGTATGATTAGTATTGTAGTTAGAGCTGGAAGACGAAAAAATTGAGCCTTTTTTTTTTTTGAGTTCTGTCTGTATTGGAATGAAGAGAAATGGGTGTTAACTATTGAGCTTTGTATAAGTACTGTATTTAGAGTTGGAAGGCAAATTTGAGACCCCTTTTATATTTTGTATGTATTGGGATGAAGAGAAACGAGTGACCGAGTTGGTTGAGCCTGGGATTTCCCTTAGGGTCCTGGGTTCCATATCACCTGTATGTGTTTCTAGGTCGAGCTTGTCACGCGGGGCTTTTGTTGCCTATTGCGGTTTATATTTCCTTTGTTGTTTGCGCACTAACAAAAGGGTAACAGCTGTGGTTCCCTTGTTATGAAAACAAAATGGGTGTTTGAGATTTGTTATATACCTGATTTAGGCTTAGTTGTTGTTATTGTGTTGTTCTTCTTTTCAGGTTTTTGAATATAATCAAGGAACAAGTGGATAGTTTTGAAAGAATTAGCTTAATTTTGAATTTAAACAGGGACAAACATCCATGCTTCGTATAGTAGTTGAAACTATTTGCAAAGTTTGAGAGCCCCCCTTAATCATCTCAATTTTGATGGTCTCTCTTTTTTTGGGCTAAATTTTAGATTGTATGCAGATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTG</genome_strand>
        <mrna_strand>TTTTTTTCTCCTCTTT-ATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAG.........................................................................................................................................................................................................................................................................................................................AGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354345" ref_strand="+" ref_description="SGN-E354345 [cTOS-17-E9]">
      <seq>cgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactgtggatgagaagaaaccagtgtatgatttgggagttagagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatagcagagaggagagaaacttcaaggtatttcttgagaagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggttatcagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacnangaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaattttcagattagggtgtttgatgtttgaagtacaacgaagaggctatgtagctgatagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="38193" stop="39487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38496" g_stop="39187" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="705" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E354345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38496" e_stop="39187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTT</genome_strand>
        <mrna_strand>ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACNANGAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354474" ref_strand="+" ref_description="SGN-E354474 [cTOS-17-H8]">
      <seq>cgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactgtggatgagaagaaaccagtgtatgatttgggagttagagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatagcagagaggagagaaacttcaaggtatttcttgagaagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggttatcagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="38193" stop="39430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38496" g_stop="39130" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="648" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E354474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38496" e_stop="39130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTT</genome_strand>
        <mrna_strand>ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244377" ref_strand="+" ref_description="SGN-E244377 [cLEF-3-K18]">
      <seq>gaaaactcatttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactgtggatgagaagaaaccagtgtatgatttgggagttagagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatagcagagaggagagaaacttcaaggtatttcttgagaagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggttatcagagaggagaactacagcccgaagagttcggaaaatttgagttggaatgatttcccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="38203" stop="39342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38503" g_stop="39042" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E244377" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38503" e_stop="39042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCT</genome_strand>
        <mrna_strand>GAAAACTCATTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCCGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364735" ref_strand="+" ref_description="SGN-E364735 [cLPT-4-G14]">
      <seq>aagattgcatcaatacatgcacaataaacttaaagataagcaatacaaaaaagaaaattcatattacaatcagccatgaaagtgaactgaagctatcagctacatagcctcttcgttgtaaatcaaacaccctaatctgaaaattttgtgacagaactaactacatttgccatccaaatcatccaaaaactactacttcttacttttttgttcaacaaacgtctataaggggggaaatcattccaactcaaattttccgaactcttctggctgtagttctcctctctgataaccccacagatttgtccatgctgattggtaaaggaggcttcttgttctccttactagctgtgcttctcaagaaataccttgaagtttctctcctctctgctattggtgtagaagcaacaactgatttcctcgcgctttgggacatcttaggctctccttttttcttggaagattcaactctaactcccaaatcatacactggtttcttctcatccacagtgtcaccacccttcttcctcttcaatctctcattccttctagcggagtactcttcataaaacttgcccctttcgaataaaggacttctcttcgcattcaatgaatcagagttatcagcagcattcacatcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="39576" stop="38326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39276" g_stop="38626" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E364735" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39276" e_stop="38626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGCATCAATACATGCACAATAAACTTAACGATAAGCAATGCAAAAAAGAAAATTCATATTACAATCAGCCATGAAAGTGAACTGAAGCTATCAGCTACATAGCCTCTTCGTTGTACTTCAAACATCAAACACCCTAATCTGAAAATTTTGTGACATAACTAACTACATTTGCCATCCAAATCATCCAAAAACTACTACTTCTTACTTTTTTGTTCAACAAACGTCTATAAGGGGGGAAATCATTCCAACTCAAATTTTCCGAACTCTTCTGGCTGTAGTTCTCCTCTCTGATAACCCCACAGATTTGTCCATGCTGATTGGTAAAGGAGGCTTCCTGTTCTCCTTACTAGCTGTGCTTCTCAAGAAATACCTTGAAGTTTCTCTCCTCTCTGCTATTGGTGTAGAAGCAACAACTGATTTCCTAGCGCTTTGGAACATCTTAGGCTCTCCTTTTTTCTTGGAAGATTCAACTCTAACTCCCAAATCATACACTGGTTTCTTCTCATCCACAGTGTCACCACCCTTCTTCCTCTTCAATCTCTCATTCCTTCTAGCAGAGTACTCTTCATAAAACTTGCCCCTTTCGAATAAAGGACTTCTCTTTGCATTCAATGAATCAGAGTTATCAGCAGCATTCACATCCTCG</genome_strand>
        <mrna_strand>AAGATTGCATCAATACATGCACAATAAACTTAAAGATAAGCAATACAAAAAAGAAAATTCATATTACAATCAGCCATGAAAGTGAACTGAAGCTATCAGCTACATAGCCTCTTCGTTG----T--AA-ATCAAACACCCTAATCTGAAAATTTTGTGACAGAACTAACTACATTTGCCATCCAAATCATCCAAAAACTACTACTTCTTACTTTTTTGTTCAACAAACGTCTATAAGGGGGGAAATCATTCCAACTCAAATTTTCCGAACTCTTCTGGCTGTAGTTCTCCTCTCTGATAACCCCACAGATTTGTCCATGCTGATTGGTAAAGGAGGCTTCTTGTTCTCCTTACTAGCTGTGCTTCTCAAGAAATACCTTGAAGTTTCTCTCCTCTCTGCTATTGGTGTAGAAGCAACAACTGATTTCCTCGCGCTTTGGGACATCTTAGGCTCTCCTTTTTTCTTGGAAGATTCAACTCTAACTCCCAAATCATACACTGGTTTCTTCTCATCCACAGTGTCACCACCCTTCTTCCTCTTCAATCTCTCATTCCTTCTAGCGGAGTACTCTTCATAAAACTTGCCCCTTTCGAATAAAGGACTTCTCTTCGCATTCAATGAATCAGAGTTATCAGCAGCATTCACATCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688084" ref_strand="+" ref_description="SGN-E688084 [T3_tus_85_J01]">
      <seq>ctctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactgtggatgagaagaaaccagtgtatgatttgggagttagagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatagcagagaggagagaaacttcaaggtatttcttgagaagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggttatcagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaattttcagattagggtgtttgatgtttgaagtacaacgaagaggctatgtagctgatagcttcagttcactttcatggctgattgtaatatgaattttcttttttgcattgcttatcgttaagtttattgtgcatgtattgatgcaatctttacattgcagaaccaagataagtctattgaactacttgcattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccggggggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="38350" stop="39622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38650" g_stop="39322" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="703"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E688084" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38650" e_stop="39322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTGAGA</genome_strand>
        <mrna_strand>CTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353538" ref_strand="+" ref_description="SGN-E353538 [cTOS-15-B21]">
      <seq>tcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactgtggatgagaagaaaccagtgtatgatttgggagttagagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatagcagagaggagagaaacttcaaggtatttcttgagaagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggtttatcagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaattttcagattagggtgtttgatgtttgaagtacaacgaagaggctatgtagctgatagcttcagttcactttcatggctgattgtaatatgaattttcttttttgcattgcttatcgttaagtttattgtgcatgtattgatgcaatctttacattgcagaaccaagataagtctattgaactacttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="38377" stop="39619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38677" g_stop="39319" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E353538" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38677" e_stop="39319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGG-TTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTG</genome_strand>
        <mrna_strand>TCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351416" ref_strand="+" ref_description="SGN-E351416 [cTOS-12-F1]">
      <seq>gagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatatcagagaggagagaaacttcaaggtatttcttgataagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggttatcagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtaacactttttggatgatttggatggccaatgtagctagttatgtcacaaaattttccaattagggtgtctgatgtttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="38499" stop="39456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38799" g_stop="39156" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E351416" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38799" e_stop="39156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAG</genome_strand>
        <mrna_strand>GAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATATCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGATAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAACACTTTTTGGATGATTTGGATGGCCAATGTAGCTAGTTATGTCACAAAATTTTCCAATTAGGGTGTCTGATGTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354317" ref_strand="+" ref_description="SGN-E354317 [cTOS-16-L24]">
      <seq>tctttctcaccatccaaaatacctgccaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtttctagtggtggtgtccacggatggaaccttatgcgcaaattgacgagcaggggagccaatgtccttgcacagacactactttggccgggtgtatcagacttaactggatccttccggctgtaccagaagtctgcactagaagacatcataagctcttgtgtcagtaaaggatatgtttttcagatggagatgattgttagggcttcaagaaaaggttaccgcattgaagaggttccaattactttcgttgatagagtatttggaagttctaagcttggaggatctgaaatagtggagtatctaaagggccttctgtatcttctggttacaacttgatatgtttaacaagctgcatgaccagagaatctgaagacttgagttgttttgcaacctgtgacattctgaagacttgaactaggaccatataacaaattctttttctttttgcttcagctgatgtaaccaaaactttgatgaatgagctattatgtattggaaagagtgttgctgaagtaatttccaatgctactttggtttattttgtggatgatgctttccatttttggataatacacttgttcaagttatctgtgaatattaacttgcattttccagcttatataaatgtctacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="41593" stop="39279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="39" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41178" g_stop="41014" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="204" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40581" g_stop="40467" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="319" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39983" g_stop="39579" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="724" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E354317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41014"/>
          <exon e_start="40581" e_stop="40467"/>
          <exon e_start="39983" e_stop="39579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCGGTATGTTTTAATTTGGAAGTAGAGGAAAATCTGTGGTTCGATGAATTGTTATGAGCATATTTAGGAAATGTACTTTGCATAAACCATAAGGGGTTGCTTAGATTAGGATTACTTCCTAATATCTGGGACTTCGGCGTGGAGATTATAAATCTAATGGAATGCTGGATTGGGAGATAATGGTTGTAATTGTTCAAGACTTCCTATTTTTCTACAAACTTATAACTAAAAGGAGGGAAGTCCACATAGAAAAGGAAAAAAGACACTGTACTTTTATATGGAAATTGATTTGGTCTCAGGAATCATTGTTTTGTGTGATTTTTTGTTCTTAAGAAACTGAATGATCATCACGTGTTTTACTCTTATATACTCTAATGCTCACAATTAATGTAATTTGTATAATCATTGTCTGAAACTGAATTGCTTGTTTTGAAGGCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAGGTAGCTAAAGACATGGATTTACTGTTGAATACTAATTAATCCACTGCATTGACATTTGTTTGGACAAGAAAATCTTGTCTCTTATTGCATCGTGCTACTAACTGCATAATTTATGATGTCCATAGTGCTATTCTAATATTAATAATGATGCAAACTAATGGCAGTTCTTAAGCATTTAGTTGGTTATATGCTCTCAAACTGGGAGCTTTGTTGGTTGCTATCCCCCAGTTGTCTCTCATCCTAACATTGTATTATGCGGCTGTAAGCCATTTGATTTTTCTAAGAGAGCTCTCTTCATTATTATTGTTGTTTTTCCTGAGTCAATTGCACCCCCATCCCCACTCCGTGTATTTTTTTTCTTTTTCATCTCAGTTCTTCACAATAGTCACCTGCAACCACTTCATTGTTTGGTTTTATTTTTATGATGTACTTTTCATCTTTCCAAAGGTAGCCTGAATTCAAGTTGGATTTTACTATTTGTAGGTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</genome_strand>
        <mrna_strand>CCAAAATACCTGCCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242683" ref_strand="+" ref_description="SGN-E242683 [cLED-30-L2]">
      <seq>gaacaagtacagtataattatacctacctacaatgaacgtctcaatattgctctcatcatctacctcgtcttcaagcatctcacggatgttgattttgaaataatagtagtggatgatggaagtccagatggcacacaggatattgtcaaacaattgcagaaagtatatggagaagatcgtattttattaagacctccacctcggaaacttggtctaggcactgcgtatattcatggtttgaagcatgcctcaggcaattttgttgttattatggatgcggatctttctcaccatccaaaatacctgccaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtttctagtggtggtgtccacggatggaaccttatgcgcaaattgacgagcaggggagccaatgtccttgcacagacactactttggccgggtgtatcagacttaactggatccttccggctgtaccagaagtctgcactagaagacatcataagctcttgtgtcagtaaaggatatgtttttcagatggagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="43961" stop="40205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43661" g_stop="43578" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="184" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42023" g_stop="41990" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="218" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41901" g_stop="41825" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="295" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="321" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41178" g_stop="41014" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="486" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40581" g_stop="40505" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="563" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E242683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43661" e_stop="43578"/>
          <exon e_start="42221" e_stop="42122"/>
          <exon e_start="42023" e_stop="41990"/>
          <exon e_start="41901" e_stop="41825"/>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41014"/>
          <exon e_start="40581" e_stop="40505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCACGTAAACACTCTTTCTCTCTATCCCGTTTCTTTTTTTTTTGTGTGTGTGTGTGTGATCACTGCTATTAAAGTTTCTGTCTTTTTGGAAAATATTTGCATCTGGAAAAATGGGTTTTATGATTTATTAGAAAAGAATTGTTTTTTGGTTTTTATATTCGATCTTCTGTAAGCAACTTAAATTTGGCATGAATTGGAGCTGTGTAGAGGAAATTGACTAGAATTTTGTTGAAGTTGTTGCTATTAAGATCGTTTGTGTAATATCCCAGCATTGATTAATTGAATTAATCTATGATCTATGTGAAAACGGTTATCTTTATCATCAAAATCTAGGAAAAGGTAGTCTTCAATTTTGAACTGAATAGGAGAGGAGAAATTAGAAAGGAGTATAGAATGAAATGGAGAAGAAAGTAGATAGAGTTAAGAAAAGAGGCAAGAAAGTGTAAAGAAGAAGCGAAACGAAACAGAGAGCAGAGAGGAAGATCGGGTGATAGAGAGATTAGATGACCAGTATAGGTATAGAAGGGAGAGAGGAATGAGCATTTTCCACATTTTCAGAAGCTTTTTCTACCCCTAGCTTCTATCTCTTTGTGTGTTTGTGAGTGAGATGTTCAGTTACAACTCATGTGCCACCCATGTTCTCACAACTATTTGTGGATTCATGACAGTTTGATTTAAATTTGAGTTAGATAGGCATGAGAATTTGTAAAGATTGTATCTTTTTGGAATCTAATATAGATGGTTGGGAGCTTTCGTGAGGATTGTAACTTTTTGAGGGAATCCATTGATTAGTAGGCTGGAAAATAACGTGGCTTACACCCAAATTCCAAGTGATTGTTGGCAGATATCACTTATCAGGAGCAAATTTGGAAAGGGCTATGTCAAAACATTTTACAGTTCTTGGAATCAATTTTCACCATTTATAAATTATTTTCGAAGATGATCTTTCTTTTTATAAGGAATTTGGGGGATCTATGCATTAATTTTTGTATGGATGAGGAGTTAGGTTCTGTCCTTTACATGCTTACCATTTTTTTCATATTTATTTGCTCATTGCTAATAATATTGATGCTCAACCACGAGAGAAGACATTGTTATTGAGATTGATTTATATAGATGTCAGGTCCTGTTTTATTCGACCACATTGTTGTTTATGACGCAAGAAAAATGTACACCATGTTCATGACATCATTTAGTGTCTTTGAGGGGGATGTTCCCATTTTGAGGACTAAAATTCATTTTTCCCTTGTATTTGAATTAAATCTCAGCTTATTTTTTCATATGCAATATTTAGAGGTGATAAAATCATGTAAATGCATAAGCAGATTCTTATTGCAAAATTTGTTTTTTCTTGACTCAGGGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATTGTTAGTAGCTTCTTACTTCATCCAGTTGTTGCACATTATGCTTCCCTGATCATACCAGTTTATCATCTCACTTTGCTCATTTCTCTTGTTTACTACAGTTATTAAGACCTCGACCTCGGAAACTTGGTCTAGGTACTTCCATTTTATTATGATAACCATGATTTCTTTTTCATACGAAGATGTTAGCCATGAATAGTCTCTGACATTCCTCTTATCTCAGGCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCATGTAAGTATGATTGAAGATAAGGGCCTCGTTTGGTTTCCTTTTATATTTTGTCTTTTTGTTGTGAAATGTCCTTTATCTATTTGTTGGAACATCAAGTGTTTTTGTTGGGAAAGGAACAGAAAGGGGATATGTGGTGTGCAGTGGGTTTTTTTTATGCTTGATGTTATGGGAAGAAACGATTCAAATAGCTCTGGGTGTGTATATCGAATAATTAAATTTATTTTTTGGGTTAATCGTTATTTTTCACGCCCTCATTGTTGCACTATTGCATATCCTGTCTGTGCCTGCGGTGATTTAGTTCCCCCAGCATCCAGCACCCTCAATAGTAAGAAAAAGGGCAATTTGTTCCTTGGACAACTGAAACTTGATAGTGTAGGCCCACTTCATCAAAACTTAAAAGTGTAGGACCAAAAATCAGTGACTTCCTGAATTTAATTATGTGAGCCTGTATATTGTTAGTCTGTCTCATAAAATATTAGTCTCTATACCAAGCTTATTTGATTTTAAATTTTATGGTTGATTCTTTTATACTTTTTTTTACAGCCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCGGTATGTTTTAATTTGGAAGTAGAGGAAAATCTGTGGTTCGATGAATTGTTATGAGCATATTTAGGAAATGTACTTTGCATAAACCATAAGGGGTTGCTTAGATTAGGATTACTTCCTAATATCTGGGACTTCGGCGTGGAGATTATAAATCTAATGGAATGCTGGATTGGGAGATAATGGTTGTAATTGTTCAAGACTTCCTATTTTTCTACAAACTTATAACTAAAAGGAGGGAAGTCCACATAGAAAAGGAAAAAAGACACTGTACTTTTATATGGAAATTGATTTGGTCTCAGGAATCATTGTTTTGTGTGATTTTTTGTTCTTAAGAAACTGAATGATCATCACGTGTTTTACTCTTATATACTCTAATGCTCACAATTAATGTAATTTGTATAATCATTGTCTGAAACTGAATTGCTTGTTTTGAAGGCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGA</genome_strand>
        <mrna_strand>GAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT..................................................................................................TTATTAAGACCTCCACCTCGGAAACTTGGTCTAG........................................................................................GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATACCTGCCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267492" ref_strand="+" ref_description="SGN-E267492 [cLEI-8-H20]">
      <seq>gagatcaacaaaatgggggagaagaacaagtacagtataattatacctacctacaatgaacgtctcaatattgctctcatcatctacctcgtcttcaagcatctcacggatgttgattttgaaataatagtagtggatgatggaagtccagatggcacacaggatattgtcaaacaattgcagaaagtatatggagaagatcgtattttattaagacctcgacctcggaaacttggtctaggcactgcgtatattcatggtttgaagcatgcctcaggcaattttgttgttattatggatgcggatctttctcaccatccaaaatacctgccaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtttctagtggtggtgtccacggatggaaccttatgcgcaaattgacgagcaggggagccaatgtccttgcacagacactactttggccgggtgtatcagacttaactggatccttccggctgtaccagaagtctgcactagaagacatcataagctcttgtgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="43984" stop="40233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43684" g_stop="43578" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="207" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42023" g_stop="41990" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="241" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41901" g_stop="41825" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="318" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="344" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41178" g_stop="41014" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="509" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40581" g_stop="40533" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="558" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E267492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43684" e_stop="43578"/>
          <exon e_start="42221" e_stop="42122"/>
          <exon e_start="42023" e_stop="41990"/>
          <exon e_start="41901" e_stop="41825"/>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41014"/>
          <exon e_start="40581" e_stop="40533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCACGTAAACACTCTTTCTCTCTATCCCGTTTCTTTTTTTTTTGTGTGTGTGTGTGTGATCACTGCTATTAAAGTTTCTGTCTTTTTGGAAAATATTTGCATCTGGAAAAATGGGTTTTATGATTTATTAGAAAAGAATTGTTTTTTGGTTTTTATATTCGATCTTCTGTAAGCAACTTAAATTTGGCATGAATTGGAGCTGTGTAGAGGAAATTGACTAGAATTTTGTTGAAGTTGTTGCTATTAAGATCGTTTGTGTAATATCCCAGCATTGATTAATTGAATTAATCTATGATCTATGTGAAAACGGTTATCTTTATCATCAAAATCTAGGAAAAGGTAGTCTTCAATTTTGAACTGAATAGGAGAGGAGAAATTAGAAAGGAGTATAGAATGAAATGGAGAAGAAAGTAGATAGAGTTAAGAAAAGAGGCAAGAAAGTGTAAAGAAGAAGCGAAACGAAACAGAGAGCAGAGAGGAAGATCGGGTGATAGAGAGATTAGATGACCAGTATAGGTATAGAAGGGAGAGAGGAATGAGCATTTTCCACATTTTCAGAAGCTTTTTCTACCCCTAGCTTCTATCTCTTTGTGTGTTTGTGAGTGAGATGTTCAGTTACAACTCATGTGCCACCCATGTTCTCACAACTATTTGTGGATTCATGACAGTTTGATTTAAATTTGAGTTAGATAGGCATGAGAATTTGTAAAGATTGTATCTTTTTGGAATCTAATATAGATGGTTGGGAGCTTTCGTGAGGATTGTAACTTTTTGAGGGAATCCATTGATTAGTAGGCTGGAAAATAACGTGGCTTACACCCAAATTCCAAGTGATTGTTGGCAGATATCACTTATCAGGAGCAAATTTGGAAAGGGCTATGTCAAAACATTTTACAGTTCTTGGAATCAATTTTCACCATTTATAAATTATTTTCGAAGATGATCTTTCTTTTTATAAGGAATTTGGGGGATCTATGCATTAATTTTTGTATGGATGAGGAGTTAGGTTCTGTCCTTTACATGCTTACCATTTTTTTCATATTTATTTGCTCATTGCTAATAATATTGATGCTCAACCACGAGAGAAGACATTGTTATTGAGATTGATTTATATAGATGTCAGGTCCTGTTTTATTCGACCACATTGTTGTTTATGACGCAAGAAAAATGTACACCATGTTCATGACATCATTTAGTGTCTTTGAGGGGGATGTTCCCATTTTGAGGACTAAAATTCATTTTTCCCTTGTATTTGAATTAAATCTCAGCTTATTTTTTCATATGCAATATTTAGAGGTGATAAAATCATGTAAATGCATAAGCAGATTCTTATTGCAAAATTTGTTTTTTCTTGACTCAGGGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATTGTTAGTAGCTTCTTACTTCATCCAGTTGTTGCACATTATGCTTCCCTGATCATACCAGTTTATCATCTCACTTTGCTCATTTCTCTTGTTTACTACAGTTATTAAGACCTCGACCTCGGAAACTTGGTCTAGGTACTTCCATTTTATTATGATAACCATGATTTCTTTTTCATACGAAGATGTTAGCCATGAATAGTCTCTGACATTCCTCTTATCTCAGGCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCATGTAAGTATGATTGAAGATAAGGGCCTCGTTTGGTTTCCTTTTATATTTTGTCTTTTTGTTGTGAAATGTCCTTTATCTATTTGTTGGAACATCAAGTGTTTTTGTTGGGAAAGGAACAGAAAGGGGATATGTGGTGTGCAGTGGGTTTTTTTTATGCTTGATGTTATGGGAAGAAACGATTCAAATAGCTCTGGGTGTGTATATCGAATAATTAAATTTATTTTTTGGGTTAATCGTTATTTTTCACGCCCTCATTGTTGCACTATTGCATATCCTGTCTGTGCCTGCGGTGATTTAGTTCCCCCAGCATCCAGCACCCTCAATAGTAAGAAAAAGGGCAATTTGTTCCTTGGACAACTGAAACTTGATAGTGTAGGCCCACTTCATCAAAACTTAAAAGTGTAGGACCAAAAATCAGTGACTTCCTGAATTTAATTATGTGAGCCTGTATATTGTTAGTCTGTCTCATAAAATATTAGTCTCTATACCAAGCTTATTTGATTTTAAATTTTATGGTTGATTCTTTTATACTTTTTTTTACAGCCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCGGTATGTTTTAATTTGGAAGTAGAGGAAAATCTGTGGTTCGATGAATTGTTATGAGCATATTTAGGAAATGTACTTTGCATAAACCATAAGGGGTTGCTTAGATTAGGATTACTTCCTAATATCTGGGACTTCGGCGTGGAGATTATAAATCTAATGGAATGCTGGATTGGGAGATAATGGTTGTAATTGTTCAAGACTTCCTATTTTTCTACAAACTTATAACTAAAAGGAGGGAAGTCCACATAGAAAAGGAAAAAAGACACTGTACTTTTATATGGAAATTGATTTGGTCTCAGGAATCATTGTTTTGTGTGATTTTTTGTTCTTAAGAAACTGAATGATCATCACGTGTTTTACTCTTATATACTCTAATGCTCACAATTAATGTAATTTGTATAATCATTGTCTGAAACTGAATTGCTTGTTTTGAAGGCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGT</genome_strand>
        <mrna_strand>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT..................................................................................................TTATTAAGACCTCGACCTCGGAAACTTGGTCTAG........................................................................................GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATACCTGCCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336137" ref_strand="+" ref_description="SGN-E336137 [cTOE-12-I7]">
      <seq>aaaatgggggataagaacaagcacagtataattatacctacctacaatgaacgtgtcaatatagctctcatcatctacctggacttcaagcatttcacggatgttgatattgaaataatagtagtggatgatggaagtccagatggcacacatgatattgtcaaacaattgcagaaagtatatggagaagatcgtattttattaagacctcaacctcggaaacttggtctaggcactgcgtatattcatggtttgaagcatgcctcaggcaattctgctgttattatggatgcggatctttctcaccatccaaaatacctgtcaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtatctagtggtggtgttcacggatggaaccttatgcgcaaattgacgagcctgggagccaatgtccttgcacagacactactttggccgggtgtatcagacttaactggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="43975" stop="40721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43675" g_stop="43578" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="198" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98">
            <donor d_prob="0.418" d_score="0.98"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42023" g_stop="41990" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="232" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41901" g_stop="41825" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="309" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543">
            <donor d_prob="0.903" d_score="0.96"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="335" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41178" g_stop="41021" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="493" r_length="158" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E336137" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43675" e_stop="43578"/>
          <exon e_start="42221" e_stop="42122"/>
          <exon e_start="42023" e_stop="41990"/>
          <exon e_start="41901" e_stop="41825"/>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCACGTAAACACTCTTTCTCTCTATCCCGTTTCTTTTTTTTTTGTGTGTGTGTGTGTGATCACTGCTATTAAAGTTTCTGTCTTTTTGGAAAATATTTGCATCTGGAAAAATGGGTTTTATGATTTATTAGAAAAGAATTGTTTTTTGGTTTTTATATTCGATCTTCTGTAAGCAACTTAAATTTGGCATGAATTGGAGCTGTGTAGAGGAAATTGACTAGAATTTTGTTGAAGTTGTTGCTATTAAGATCGTTTGTGTAATATCCCAGCATTGATTAATTGAATTAATCTATGATCTATGTGAAAACGGTTATCTTTATCATCAAAATCTAGGAAAAGGTAGTCTTCAATTTTGAACTGAATAGGAGAGGAGAAATTAGAAAGGAGTATAGAATGAAATGGAGAAGAAAGTAGATAGAGTTAAGAAAAGAGGCAAGAAAGTGTAAAGAAGAAGCGAAACGAAACAGAGAGCAGAGAGGAAGATCGGGTGATAGAGAGATTAGATGACCAGTATAGGTATAGAAGGGAGAGAGGAATGAGCATTTTCCACATTTTCAGAAGCTTTTTCTACCCCTAGCTTCTATCTCTTTGTGTGTTTGTGAGTGAGATGTTCAGTTACAACTCATGTGCCACCCATGTTCTCACAACTATTTGTGGATTCATGACAGTTTGATTTAAATTTGAGTTAGATAGGCATGAGAATTTGTAAAGATTGTATCTTTTTGGAATCTAATATAGATGGTTGGGAGCTTTCGTGAGGATTGTAACTTTTTGAGGGAATCCATTGATTAGTAGGCTGGAAAATAACGTGGCTTACACCCAAATTCCAAGTGATTGTTGGCAGATATCACTTATCAGGAGCAAATTTGGAAAGGGCTATGTCAAAACATTTTACAGTTCTTGGAATCAATTTTCACCATTTATAAATTATTTTCGAAGATGATCTTTCTTTTTATAAGGAATTTGGGGGATCTATGCATTAATTTTTGTATGGATGAGGAGTTAGGTTCTGTCCTTTACATGCTTACCATTTTTTTCATATTTATTTGCTCATTGCTAATAATATTGATGCTCAACCACGAGAGAAGACATTGTTATTGAGATTGATTTATATAGATGTCAGGTCCTGTTTTATTCGACCACATTGTTGTTTATGACGCAAGAAAAATGTACACCATGTTCATGACATCATTTAGTGTCTTTGAGGGGGATGTTCCCATTTTGAGGACTAAAATTCATTTTTCCCTTGTATTTGAATTAAATCTCAGCTTATTTTTTCATATGCAATATTTAGAGGTGATAAAATCATGTAAATGCATAAGCAGATTCTTATTGCAAAATTTGTTTTTTCTTGACTCAGGGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATTGTTAGTAGCTTCTTACTTCATCCAGTTGTTGCACATTATGCTTCCCTGATCATACCAGTTTATCATCTCACTTTGCTCATTTCTCTTGTTTACTACAGTTATTAAGACCTCGACCTCGGAAACTTGGTCTAGGTACTTCCATTTTATTATGATAACCATGATTTCTTTTTCATACGAAGATGTTAGCCATGAATAGTCTCTGACATTCCTCTTATCTCAGGCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCATGTAAGTATGATTGAAGATAAGGGCCTCGTTTGGTTTCCTTTTATATTTTGTCTTTTTGTTGTGAAATGTCCTTTATCTATTTGTTGGAACATCAAGTGTTTTTGTTGGGAAAGGAACAGAAAGGGGATATGTGGTGTGCAGTGGGTTTTTTTTATGCTTGATGTTATGGGAAGAAACGATTCAAATAGCTCTGGGTGTGTATATCGAATAATTAAATTTATTTTTTGGGTTAATCGTTATTTTTCACGCCCTCATTGTTGCACTATTGCATATCCTGTCTGTGCCTGCGGTGATTTAGTTCCCCCAGCATCCAGCACCCTCAATAGTAAGAAAAAGGGCAATTTGTTCCTTGGACAACTGAAACTTGATAGTGTAGGCCCACTTCATCAAAACTTAAAAGTGTAGGACCAAAAATCAGTGACTTCCTGAATTTAATTATGTGAGCCTGTATATTGTTAGTCTGTCTCATAAAATATTAGTCTCTATACCAAGCTTATTTGATTTTAAATTTTATGGTTGATTCTTTTATACTTTTTTTTACAGCCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGAT</genome_strand>
        <mrna_strand>AAAATGGGGGATAAGAACAAGCACAGTATAATTATACCTACCTACAATGAACGTGTCAATATAGCTCTCATCATCTACCTGGACTTCAAGCATTTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTGATATTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACATGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT..................................................................................................TTATTAAGACCTCAACCTCGGAAACTTGGTCTAG........................................................................................GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTCTGCTGTTATTATGGATGCGGATCTTTCTCACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATACCTGTCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTATCTAGTGGTGGTGTTCACGGATGGAACCTTATGCGCAAATTGACGAGCCTGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369109" ref_strand="+" ref_description="SGN-E369109 [TUS-23-I12](-)">
      <seq>aagttggatgtgacttgccaggaaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagttggtcatgatgttgaccatgtcacatcaccagaaggaatacctggagttccagaaacaaatttcaatggtcgtccaaattccttcaaattgctgtctcctgcgcacacatgtgtggcttattacagagttgacgaatgcatgtcagaaactgaagtttaccagacagacatttctaatgagctactaccaacagccaatatcgaggagagtgacgagaaacttaaagattcattatctacaaatatcagtaacatcggtcagactgttgtagcttctgttgaggagagagacaaggaacttaaagattcacctatctgtaagcatcattagtgatgttgttcaagctgactgaggtgattcggatgcaaacgtctggatcagatgtcttctacgttggtgatcttagtccgcgcatgttgccttcagggtggtagcatttcctctgcaaattattagcatccaataaatttactggttgtaaatagaaaaaatgcatttgcatgtatgtgttcctctgaaattttcccagtttttggtgctttgcctttgaagccaagtctctatatgtaataagaagactaagaacaatcacatatataaaatgttactagtagattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="46280" stop="43953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45980" g_stop="45904" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45667" g_stop="45551" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="194" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45550" i_stop="44764" i_length="787">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44763" g_stop="44252" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="706" r_length="512" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E369109" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45980" e_stop="45904"/>
          <exon e_start="45667" e_stop="45551"/>
          <exon e_start="44763" e_stop="44252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTGGTACAGTTTTTGCCCCGACCTCCCTTTTTATTGTGGTTTCGTTCATAGTTATTTGAATGCAGAGAAGTTAACTATTGATTGCCACCACAATCACCAGTTAGGTACTCTGAATACTAATTTGAAAGGTAGGAATAGCCGTAATAAGGTCTGCCTTTGGCATCTACTTTACAAAACAAAAGGATGCCAAATAATCTTCTCTATTTTCTCTTTTTCCCTAAACCAGTGCATGTAGCTTGCACTTGCATAAACTTAGGTAAATGAGCAAAAAGGAAGTCGATGGGAACTTATAACCGCCCTGAAGTAAAGCTAGGAATAGTCATTTAATGTCCACCTTTGGTGTCTGCGGTAACATCAACAACAACATACCTCATGTAGTCCCACAAAGTGCAGTAAAGGGAGGGTAGAGTGTATGCAAAACTTACTCCTATCTTAGAGGTAGAGAGGATTTTTTCAATAGACCCTTGGCTCAAGAAAAAGAAGTCCAAAAAGAAGTAACAGAAGTGAAAGCAATGCGTGTAGCTAAGCGACCCATCTTGTTTGGGACTGAAGTAGTTGTTGTTGTTGTTGAAACAGTGCATTTAGATGAACGCATGTCAGAAATGGACAACACAATTATTTGTGCAAGTCAAAAAATGTACTACTAATCTTTGTTCAGGTTTATGTTTAGAAAAGTTAAATAAATGAATTTTGCAAGTAGAAAGATTGCTGGGAGAGAAACTTATTTATATTGAACTAAGCTAAACTATATTCATCTTTTTTTTGCTTCTTCTTCGCCTTGTTTGTGAAGGCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAGATTACAG</genome_strand>
        <mrna_strand>AAGTTGGATGTGACTTGCCAGGAAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GTTGGTCATGATGTTGACCATGTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369182" ref_strand="+" ref_description="SGN-E369182 [TUS-23-I6](-)">
      <seq>aatgatgttgttcaaaaaaaaaaagatgattcggatgccaacgtctggatcagatgtcttctacgttggtgatcttagtccgcgcatgttgccttcagggtggtagcatttcctctgcaaattattagcatccaataaatttactggttgtaaatagaaaaaatgcatttgcatgtatgtgttcctctgaaattttcccagtttttggtgctttgcctttgaagccaagtctctatatgtaataagaagactaagaacaatctacatatattnaataaaaatagtagataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="44826" stop="43975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44549" g_stop="44253" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E369182" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44549" e_stop="44253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATC-ACATATATAAAATGTTACTAGTAGATTAGATTACA</genome_strand>
        <mrna_strand>AATGATGTTGTTCAAAAAAAAAAAGATGATTCGGATGCCAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCTACATATATTNAATAAAAATAGTAGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746503" ref_strand="+" ref_description="SGN-E746503 [GI|47104247]">
      <seq>cgaaagctgaagctaagtaccataatttgatcaatggaaattaatttcaatgttttatcaaaacccattcgaggatcttttccatcttcctcacctagagtttctccacgggcttctagaaataagatatgtcttccttctcaacatagtactggactgaagttcggatctcagggacggtcttgggatatttctaacaccccaaaatcaagagttagaaacgatgaaaggatgaagcacagctcagctatttccgctgttttgaccaatgataactcgacaatggcatccagagaggaagatgtcaagactgaaaatattggcctcctaaatttggatccagctttggaaccttatctagatcacttcagatacagaatgaagagatatgtggatcagaaaatgctcattcaaaaatatgagggaggccttgaggaatttgctcaaggttatttaaaatttggattcaacagggaagatggttgcatagtctatcgtgaatgggctcctgctgctcaggaagcagaagttattggtgatttcaacggatggaacggttccaaccacatgatggagaaggaccagtttggtgtttggagtattagaattcctgatgttgacagtaagccagccattccacacaactccagagttaagttccgtttcaagcatggtgagggagcgtgggtagatcgtatccctgcttggataaagtatgccactgtagacgccacaaagtttgcagcaccatatgatggtgtctactgggacccaccgccttctgaaaggtacaacttcaaataccctcgcccttccaaaccccgagccccacgaatctacgaagcacatgtcggcatgagcagctctgagccacgtgtaaattcatatcgtgagtttgcagatgatgttttacctcgaattaaggcaaataactataatactgtccagttgatggccataatggaacattcttactatggatcatttgggtatcatgttacaaacttttttgctgtgagcagtagatctggaaatccggaggacctaaagtatctgatagataaagcacatagcttgggtttacaggttctggtggatgtagttcacagtcatgcaagcaataatgtcactgatggcctcaatggctttgatattggccaaggttctcaagaatcctactttcatgccggagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctagaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatgggatttacaggaaactataatgagtatttcagcgaggctacagatgttgatgctgtcgtctatttaatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcctgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaataagaatgatgaagattggtccatgaaggaagtaacatcgagtttgacaaataggagatatacagagaagtgtatagcatatgcggagagccatgatcagtctattgtcggtgacaagaccattgcatttctcctaatggacaaagagatgtattctgggatgtcttgcttgacagatgcttctcctgttgttgatcgaggaattgcgcttcacaagatgatccactttttcacaatggccttgggaggagaggggtacctcaatttcatgggtaacgagtttggccatcctgagtggattgacttccctagagagggcaataattggagttatgacaaatgtagacgccagtggaacctcgcggatagcgaacacttgagatacaagttcatgaatgcatttgatagagctatgaattcgctcgacgaaaatttctcattcctcgcatcaggaaaacagatagtaagcagcatggatgatgataataaggttgttgtgtttgaacgtggtgacctggtatttgtattcaacttccacccaaataacacatacgaagggtataaagttggatgtgacttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagttggtcatgatgttgaccatttcacatcaccagaaggaatacctggagttccagaaacaaatttcaatggtcgtccaaattccttcaaattgctgtctcctgcgcacacatgtgtggcttattacagagttgacgaacgcatgtcagaaactgaagtttaccagacagacatttctagggagctactaccaacagccaatatcgaggagagtgacgagaaacttaaagattcattatctacaaatatcagtaacattggtcagactgttgtagcttctgttgaggagagagacaaggaacttaaagattcactatctgtaagcatcattagtgatgttgttcaagctgactgagatgattcggatgcaaacgtctggggtgaggtctagtcagatgtcttctacgttggtgatcttagtccgcgcatgttgtcttcagggtggtttcctctgcaaattattagcatccaataaatttactggttgtaaatagaaaaagtgcgtttgcatgtatgtgttcctctgaaattttcccagtttttggtgctttgcctttgaagccaagtctctatatgtaataagaaactaagaacaatcacatatataaaatgttactagtagattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="52211" stop="43953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51911" g_stop="51801" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50564" g_stop="50445" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="231" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320">
            <donor d_prob="0.861" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50124" g_stop="49908" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="448" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49416" g_stop="49347" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="518" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49202" g_stop="48933" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="788" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48932" i_stop="48718" i_length="215">
            <donor d_prob="0.150" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48717" g_stop="47811" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="1695" r_length="907" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="47616" i_length="195">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47615" g_stop="47499" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1696" r_stop="1812" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1813" r_stop="1875" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46946" g_stop="46839" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1876" r_stop="1983" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.278" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1984" r_stop="2085" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="2086" r_stop="2153" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="45985" g_stop="45904" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="2154" r_stop="2235" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="45667" g_stop="45551" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="2236" r_stop="2352" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="45550" i_stop="44764" i_length="787">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="44763" g_stop="44259" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="2353" r_stop="2861" r_length="509" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2862" polyA_stop="2874"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E746503" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>2857</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51911" e_stop="51801"/>
          <exon e_start="50564" e_stop="50445"/>
          <exon e_start="50124" e_stop="49908"/>
          <exon e_start="49416" e_stop="49347"/>
          <exon e_start="49202" e_stop="48933"/>
          <exon e_start="48717" e_stop="47811"/>
          <exon e_start="47615" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45904"/>
          <exon e_start="45667" e_stop="45551"/>
          <exon e_start="44763" e_stop="44259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGGGTAATTTTTTTTACTAATTTCATGTTAATTTCAGTTGATTTTAGCCTTTTCATTATATTTTCCTGTAGTTCTGGATCGTCTCCTTAAATTTTTTTTAATATATAATATCATTTATGGAAGAAAAATGACACTTATAGAACCTTACGTAGTATCATGTGACAAATTTGTAAGATGGTTGAGTGTATAAAAATCAAAAACTGAGAGATGATGGGTGTGTGGGGAGAGACCATATTTAGAAAGAGTGTTGTAGGAGGTTATGGAGGACACAGATGAGGGGTAGAAGGTCAGTTAGGTATTTGAGTGTTGTTTCACTTATCCTTTTATACTAGTAGTCGTGGAATTAGTTGGGTAGTTTCTTGTTTTGTTATTTGATCTTTGTTACTGTTTTCTGTTTCTTGTACTTTGATTTTTGTATTATATATCTTGTTGTAGTTATTGTTCCTCGGTTTCGAATGCTCTAACATGCTTCCTTTTGTGTTTTATCATGGCTTCTTCATATTCGCGTTGCTTTGAAATGCTTTTACTTTAGCTGAGGTCTATTAAAACAATCTTTCTATCTCGTTAGGGGTAAGGTCCTCCCCCAACTCCACTTGTAGGATTACGTTGTGTTTGTTGTTGTAAATCAATTATGTATACATAACAAGTGGATTTTTTACAACACAAACACAGGGTCAAGGCCAAAGTTCTGAACAAATGGACATGCTTTTAGCTCTTTCCCTGGATGGAAGAGGAGTAAAAGTAAACATTATACCCTACAACTCTATTATTAGCCTAAACGGTTCATTATATGTCCAGGGAAATGATAAAAATTGTTTCTTTCTGAAGTTATATAAGATTTGTTATGGATGTTGCTGGAAACATAATAAGTTATAATGCGAGATAGCTACTGAAGTTTGTTTTTTCTAGCCTTTTGAATGTACCAGTGATAGATTCAGTATCGAACGAGAGTGTATTGATTACCTGGTCATGATGTTTCTTATTTTTACATTTTTCTTTTGGTGTTGGACTGCAATTGAAAATGTTGTATCATATGAGACGGATAATTGAGAATGTGTTCTTTGAATGGACCTTGAGAAGCTCAAATGCCTACTCCAATAATTTCTATGAATTCAAATTCAGTTTATGGCTACGAGTCAGTTCAGAGATTAGGATATGCTGCATGTACATGTTCAATTATACTGCAAGATTTCATAAGTTCTCAAGATATCCATGTAACCTCGAGAATTTCTTTGACAGGCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGGGTATGTTTGATAATTGATATGGTTGCACGGATAGTATATAAATAGTTGGAAAATTTCTGGACTGGTGTTCATAGCATATTTGATCTGTGCACCATGTGGAGACGTCAAACATGTGTTACTTTGTCCCGCCAACTTAAATTACCTTAACTTGGGAAAGGAGCTCTTTACTCCTGCGGGCATTTGTTATTTGAATTACAATCTTTATGAGCATGGTGTTTCCACATTATCAACTTCTTTCGTGTTGTATATAACAGTTTTTAGCTCCGTTGATACCTTTCTTCCTTTTGATATAAACTCACTGTGGTGCATTGCTTGCTTAGATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAGGTAAGAGCCAAGAGTTGTGCTTTAGGCAGTTTGACCTTATTGTGGAAGATGAATTGATTATACCTACTTTGACTTTGCTAGAGAATTTTGCATACCGGGGCGTAAGTAGTGGCTCCATTTAGGTGGCACGAAGCTATTTTTCAATCTTTTAAAAAGCTGTTTGATTGGGTCTTCAAGAAAGTACACAAGTTTTTTGGAGAAGTGACACACCCCTAGGTGTCAGTGGCAAAGCCAAGATTTTCACTAAGGAGATTTGAAATATAAGAAATATACACACAAAGAAGCTGAGGGGATTCAACATGTACTGTATAAGCATCAAATATGGTCTTAAAGCAATTTTGTAGAAAAAAAGAAAGTCTTCCTTCTGTTGCTTCACAATTTCCTTCTATAATCATGGGTTACTCTTTCTGTTCAAAATAGCTTCCTTAATATTGATTTTTGTTGAGATTTAGCAGGTTTTTCTTTTGTAAACTGCTCTCTTTTTTTTGCAGGTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCAGTAGGTCCTCCTCTACTACAAAATAGTAGTTTCCATCATCATAACTGATTTCCTTTTAAAGCATGGTGTTCCAGCATTATTGGCTTTTTACATCTTCTAATTGCTATTAAGGTTATGCTTCTAATTAACTCATCCACAATGCAGGGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAGGTTTCGTTATTCATACCTTGAAGCTGAATTTTGAACACCATCTTCACAGGCATTTAGATTCATGTTCTTGCTAGTCTTTTTATGTAAGACATTTTGAAATGCAAAAGCTAAAATAATGTGTCTTTACTAATTTGGACTTGATCCATACTCTTCCCCTTAACAAAATAAATCAATCTATAAGTGCTTGATAACTTACTACTTCAGCAATTAAACAGGTACAACTTCAAATACCCTCGCCCTTCCAAACCCCGAGCCCCACGAATCTACGAAGCACATGTCGGCATGAGCAGCTCAGAGCCACGTGTAAATTCGTATCGTGAGTTTGCAGATGATGTTTTACCTCGAATTAAGGCAAATAACTATAATACTGTCCAGTTGATGGCCATAATGGAACATTCTTACTATGGATCATTTGGGTATCATGTTACAAACTTTTTTGCTGTGAGCAGTAGATCTGGAAATCCGGAGGACCTAAAGTATCTGATAGATAAAGCACATAGCTTGGGTTTACAGGTTCTGGTGGATGTAGTTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAGGTATTTTAAATTTATTTCTACAGCAAAATAATTCTCAGAACAATTGCTAGATAGAACCCAAATATACTTGTCCTGAAAGTATAAAGTACTTCTATCGCCATGGGCTTCAGAACATTGGTAGCCATTTAATCACAAGATAAGTTATTTATCCGGTGACATTTTTATGTTCACTCTTATTATGTCTGCTGGATACAGTCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTGGTACAGTTTTTGCCCCGACCTCCCTTTTTATTGTGGTTTCGTTCATAGTTATTTGAATGCAGAGAAGTTAACTATTGATTGCCACCACAATCACCAGTTAGGTACTCTGAATACTAATTTGAAAGGTAGGAATAGCCGTAATAAGGTCTGCCTTTGGCATCTACTTTACAAAACAAAAGGATGCCAAATAATCTTCTCTATTTTCTCTTTTTCCCTAAACCAGTGCATGTAGCTTGCACTTGCATAAACTTAGGTAAATGAGCAAAAAGGAAGTCGATGGGAACTTATAACCGCCCTGAAGTAAAGCTAGGAATAGTCATTTAATGTCCACCTTTGGTGTCTGCGGTAACATCAACAACAACATACCTCATGTAGTCCCACAAAGTGCAGTAAAGGGAGGGTAGAGTGTATGCAAAACTTACTCCTATCTTAGAGGTAGAGAGGATTTTTTCAATAGACCCTTGGCTCAAGAAAAAGAAGTCCAAAAAGAAGTAACAGAAGTGAAAGCAATGCGTGTAGCTAAGCGACCCATCTTGTTTGGGACTGAAGTAGTTGTTGTTGTTGTTGAAACAGTGCATTTAGATGAACGCATGTCAGAAATGGACAACACAATTATTTGTGCAAGTCAAAAAATGTACTACTAATCTTTGTTCAGGTTTATGTTTAGAAAAGTTAAATAAATGAATTTTGCAAGTAGAAAGATTGCTGGGAGAGAAACTTATTTATATTGAACTAAGCTAAACTATATTCATCTTTTTTTTGCTTCTTCTTCGCCTTGTTTGTGAAGGCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTC-----T--GG---A-TCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAG</genome_strand>
        <mrna_strand>CGAAAGCTGAAGCTAAGTACCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATCTTCCTCACCTAGAGTTTCTCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAGAAATAAGATATGTCTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTCAGGGACGGTCTTGGGATATTTCTAACACCCCAAAATCAAGAGTTAGAAACGATGAAAGG................................................................................................................................................................................................................................................................................................................................ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCA................................................................................................................................................GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGTGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAG.......................................................................................................................................................................................................................GTACAACTTCAAATACCCTCGCCCTTCCAAACCCCGAGCCCCACGAATCTACGAAGCACATGTCGGCATGAGCAGCTCTGAGCCACGTGTAAATTCATATCGTGAGTTTGCAGATGATGTTTTACCTCGAATTAAGGCAAATAACTATAATACTGTCCAGTTGATGGCCATAATGGAACATTCTTACTATGGATCATTTGGGTATCATGTTACAAACTTTTTTGCTGTGAGCAGTAGATCTGGAAATCCGGAGGACCTAAAGTATCTGATAGATAAAGCACATAGCTTGGGTTTACAGGTTCTGGTGGATGTAGTTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGATTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCCTGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAATAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCGGAGAGCCATGATCAG...................................................................................................................................................................................................TCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGGATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGCGAACACTTGAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAATGCATTTGATAGAGCTATGAATTCGCTCGACGAAAATTTCTCATTCCTCGCATCAGGAAAACAGATAGTAAGCAGCATGGATGATGATAATAAG............................................................................................................................................................................GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTACAGAGTTGACGAACGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAGGGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATTGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCA-CTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGATGATTCGGATGCAAACGTCTGGGGTGAGGTCTAGTCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGTCTTCAGGGT-G--G--TTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAGTGCGTTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAA-ACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246213" ref_strand="-" ref_description="SGN-E246213 [cLEF-40-A9]">
      <seq>cacacatgtgtggcttattacagagttgacgaatgcatgtcagaaactgaagtttaccagacagacatttctaatgagctactaccaacagccaatatcgaggagagtgacgagaaacttaaagattcattatctacaaatatcagtaacatcggtcagactgttgtagcttctgttgaggagagagacaaggaacttaaagattcacctatctgtaagcatcattagtgatgttgttcaagctgactgaggtgattcggatgcaaacgtctggatcagatgtcttctacgttggtgatcttagtccgcgcatgttgccttcagggtggtagcatttcctctgcaaattattagcatccaataaatttactggttgtaaatagaaaaaatgcatttgcatgtatgtgttcctctgaaattttcccagtttttggtgctttgcctttgaagccaagtctctatatgtaataagaagactaagaacaatcacatatataaaatgttactagtagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="45064" stop="43953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44763" g_stop="44259" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="517" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="532"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E246213" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44763" e_stop="44259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAG</genome_strand>
        <mrna_strand>GCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699750" ref_strand="+" ref_description="SGN-E699750 [FA11AD11]">
      <seq>attggagttatgacaaatgtagacgccagtggaacctcgcggatagtcaacacttgagatacaagttcatgaacgcatttgatagagctatgaattcactcgacgagaagttctcattccttgcatcaggaaaacagatagtaagcagcatcgatgatgataataaggttgttgtgtttgaacgtggtgacctggtatttgtattcaacttccacccaaataacacatacgaagggtataaagttggatgtgacttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagttggtcatgatgttgaccatttcacatcaccagaaggaatacctggagttccagaaacaaatttcaatggtcgtccaaattccttcaaattgctgtctcctgcgcacacatgtgtggcttattacagagttgacgaatgcatgtcagaaactgaagtttaccagacagacatttctaatgagctactaccaacagccaatatcgaggagagtgacgagaaacttaaagattcattatctacaaatatcagtaacatcggtcagactgttgtagcttctgttgaggagagagacaaggaacttaaagattcacctatctgtaagcatcattagtgatgttgttcaagctgactgaggtgattcggatgcaaacgtctggatcagatgtcttctacgttggtgatcttagtccgcgcatgttgccttcagggtggtagcatttcctctgcaaattattagcatccaataaatttactggttgtaaatagaaaaaatgcatttgcatgtatgtgttcctctgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="47203" stop="44056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46903" g_stop="46839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.278" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="167" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="235" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45985" g_stop="45904" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="317" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45667" g_stop="45551" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="434" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45550" i_stop="44764" i_length="787">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44763" g_stop="44356" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="842" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E699750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46903" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45904"/>
          <exon e_start="45667" e_stop="45551"/>
          <exon e_start="44763" e_stop="44356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTGGTACAGTTTTTGCCCCGACCTCCCTTTTTATTGTGGTTTCGTTCATAGTTATTTGAATGCAGAGAAGTTAACTATTGATTGCCACCACAATCACCAGTTAGGTACTCTGAATACTAATTTGAAAGGTAGGAATAGCCGTAATAAGGTCTGCCTTTGGCATCTACTTTACAAAACAAAAGGATGCCAAATAATCTTCTCTATTTTCTCTTTTTCCCTAAACCAGTGCATGTAGCTTGCACTTGCATAAACTTAGGTAAATGAGCAAAAAGGAAGTCGATGGGAACTTATAACCGCCCTGAAGTAAAGCTAGGAATAGTCATTTAATGTCCACCTTTGGTGTCTGCGGTAACATCAACAACAACATACCTCATGTAGTCCCACAAAGTGCAGTAAAGGGAGGGTAGAGTGTATGCAAAACTTACTCCTATCTTAGAGGTAGAGAGGATTTTTTCAATAGACCCTTGGCTCAAGAAAAAGAAGTCCAAAAAGAAGTAACAGAAGTGAAAGCAATGCGTGTAGCTAAGCGACCCATCTTGTTTGGGACTGAAGTAGTTGTTGTTGTTGTTGAAACAGTGCATTTAGATGAACGCATGTCAGAAATGGACAACACAATTATTTGTGCAAGTCAAAAAATGTACTACTAATCTTTGTTCAGGTTTATGTTTAGAAAAGTTAAATAAATGAATTTTGCAAGTAGAAAGATTGCTGGGAGAGAAACTTATTTATATTGAACTAAGCTAAACTATATTCATCTTTTTTTTGCTTCTTCTTCGCCTTGTTTGTGAAGGCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATT</genome_strand>
        <mrna_strand>ATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAG............................................................................................................................................................................GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728119" ref_strand="+" ref_description="SGN-E728119 [LA16DA12]">
      <seq>gactaattgcgcttcacaagatgatccactttttcacatggccttgggaggagaggggtacctcaatttcatgggtaacgagtttggccatcctgagtggattgacttccctagagagggcaataattggagttatgacaaatgtagacgccagtggaacctcgcggatagtcaacacttgagatacaagttcatgaacgcatttgatagagctatgaattcactcgacgagaagttctcattccttgcatcaggaaaacagatagtaagcagcatcgatgatgataataaggttgttgtgtttgaacgtggtgacctggtatttgtattcaacttccacccaaataacacatacgaagggtataaagttggatgtgactttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagttggtcatgatgttgaccatttcacatcaccagaaggaatacctggagttccagaaacaaatttcaatggtcgtccaaattccttcaaatttgctgtctcctgcgcacacattgtgtggcttattacagagttgacgaatgcattgtcagacacttgagtttaccagacagacatctctaatgagctactaccaacagccaatatcgaggagagtgacgagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="47818" stop="44358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47518" g_stop="47499" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="82" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46946" g_stop="46839" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="190" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.278" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="292" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="360" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45985" g_stop="45904" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="443" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45667" g_stop="45551" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="562" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45550" i_stop="44764" i_length="787">
            <donor d_prob="0.961" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44763" g_stop="44658" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="669" r_length="107" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E728119" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47518" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45904"/>
          <exon e_start="45667" e_stop="45551"/>
          <exon e_start="44763" e_stop="44658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGAC-TTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAA-TTGCTGTCTCCTGCGCACACA-TGTGTGGTACAGTTTTTGCCCCGACCTCCCTTTTTATTGTGGTTTCGTTCATAGTTATTTGAATGCAGAGAAGTTAACTATTGATTGCCACCACAATCACCAGTTAGGTACTCTGAATACTAATTTGAAAGGTAGGAATAGCCGTAATAAGGTCTGCCTTTGGCATCTACTTTACAAAACAAAAGGATGCCAAATAATCTTCTCTATTTTCTCTTTTTCCCTAAACCAGTGCATGTAGCTTGCACTTGCATAAACTTAGGTAAATGAGCAAAAAGGAAGTCGATGGGAACTTATAACCGCCCTGAAGTAAAGCTAGGAATAGTCATTTAATGTCCACCTTTGGTGTCTGCGGTAACATCAACAACAACATACCTCATGTAGTCCCACAAAGTGCAGTAAAGGGAGGGTAGAGTGTATGCAAAACTTACTCCTATCTTAGAGGTAGAGAGGATTTTTTCAATAGACCCTTGGCTCAAGAAAAAGAAGTCCAAAAAGAAGTAACAGAAGTGAAAGCAATGCGTGTAGCTAAGCGACCCATCTTGTTTGGGACTGAAGTAGTTGTTGTTGTTGTTGAAACAGTGCATTTAGATGAACGCATGTCAGAAATGGACAACACAATTATTTGTGCAAGTCAAAAAATGTACTACTAATCTTTGTTCAGGTTTATGTTTAGAAAAGTTAAATAAATGAATTTTGCAAGTAGAAAGATTGCTGGGAGAGAAACTTATTTATATTGAACTAAGCTAAACTATATTCATCTTTTTTTTGCTTCTTCTTCGCCTTGTTTGTGAAGGCTTATTACAGAGTTGACGAATGCA-TGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAAC</genome_strand>
        <mrna_strand>GACTAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCAC-ATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAG............................................................................................................................................................................GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTTGCTGTCTCCTGCGCACACATTGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTACAGAGTTGACGAATGCATTGTCAGACACTTGAGTTTACCAGACAGACATCTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251357" ref_strand="+" ref_description="SGN-E251357 [cLEG-23-B6]">
      <seq>tgacagatgcttctcctgttgttgatcgaggaattgcgcttcacaagatgatccactttttcacaatggccttgggaggagaggggtacctcaatttcatgggtaacgagtttggccatcctgagtggattgacttccctagagagggcaataattggagttatgacaaatgtagacgccagtggaacctcgcggatagtcaacacttgagatacaagttcatgaacgcatttgatagagctatgaattcactcgacgagaagttctcattccttgcatcaggaaaacagatagtaagcagcatcgatgatgataataaggttgttgtgtttgaacgtggtgacctggtatttgtattcaacttccacccaaataacacatacgaagggtataaagttggatgtgacttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagttggtcatgatgttgaccatttcacatcaccagaaggaatacctggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="47845" stop="45318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47545" g_stop="47499" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="110" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46946" g_stop="46839" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="218" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.278" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="320" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="388" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45985" g_stop="45904" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="470" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45667" g_stop="45618" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="520" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E251357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47545" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45904"/>
          <exon e_start="45667" e_stop="45618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGT</genome_strand>
        <mrna_strand>TGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAG............................................................................................................................................................................GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701783" ref_strand="+" ref_description="SGN-E701783 [FA16DG05]">
      <seq>acacttaactgttattgccgaagatgtttctggtatgccgggccttggccggcatgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaacaagaatgatgaagattggtccatgaaggaagtaacatcgagtttgacaaataggagatatacagagaagtgtatagcatatgctgagagccatgatcagtctattgtcggtgacaagaccattgcatttctcctaatggacaaagagatgtattctggcatgtcttgcttgacagatgcttctcctgttgttgatcgaggaattgcgcttcacaagatgatccactttttcacaatggccttgggaggagaggggtacctcaatttcatgggtaacgagtttggccatcctgagtggattgacttccctagagagggcaataattggagttatgacaaatgtagacgccagtggaacctcgcggatagtcaacacttgagatacaagttcatgaacgcatttgatagagctatgaattcactcgacgagaagttctcattccttgcatcaggaaaacagatagtaagcagcatcgatgatgataataaggttgttgtgtttgaacgtggtgacctggtatttgtattcaacttccacccaaataacacatacgaagggtataaagttggatgtgacttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagttggtcatgatgttgaccatttcacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48342" stop="45338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48042" g_stop="47811" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47810" i_stop="47616" i_length="195">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47615" g_stop="47499" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="349" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="412" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46946" g_stop="46839" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="520" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.278" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="622" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="690" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45985" g_stop="45904" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="772" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45667" g_stop="45638" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="802" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E701783" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48042" e_stop="47811"/>
          <exon e_start="47615" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45904"/>
          <exon e_start="45667" e_stop="45638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAGGTATTTTAAATTTATTTCTACAGCAAAATAATTCTCAGAACAATTGCTAGATAGAACCCAAATATACTTGTCCTGAAAGTATAAAGTACTTCTATCGCCATGGGCTTCAGAACATTGGTAGCCATTTAATCACAAGATAAGTTATTTATCCGGTGACATTTTTATGTTCACTCTTATTATGTCTGCTGGATACAGTCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCATTTCACATCA</genome_strand>
        <mrna_strand>ACACTTAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAG...................................................................................................................................................................................................TCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAG............................................................................................................................................................................GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GTTGGTCATGATGTTGACCATTTCACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228475" ref_strand="+" ref_description="SGN-E228475 [cLED-3-F9]">
      <seq>ttctggcatgtcttgcttgacagatgcttctcctgttgttgatcgaggaattgcgcttcacaagatgatccactttttcacaatggccttgggaggagaggggttcctcaatttcatgggtaacgagtttggccatcctgagtggattgactttcctagagagggcaattattggagttatgacaaatgtatacgccagtggaacctcgcggatagtcaacacttgtgatacaacttcatgaacgcctttgatagagctatgaatgcactccacgagaagttctcattccttgcatcaggaaaacagattgtaagcagcatcgatgatgataatgagggtgttgtgtttgaacgtggtgacctggtatttgtattcaacttccaccctaattacacataccaagggtataaagttggatgtgacttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtggccatggaagagatggtcatgatgttgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="47862" stop="45348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47562" g_stop="47499" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="127" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46946" g_stop="46839" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.278" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="337" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="405" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45985" g_stop="45904" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="487" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45667" g_stop="45648" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="507" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E228475" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47562" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45904"/>
          <exon e_start="45667" e_stop="45648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGAGTAAGGATTTGCTTGAATAACTTTTGATAATAAGATAACAGATGTAGGGTACAGTTTTCTGACCAAAAAGAACTGTAATTGTCTCATCCATCTTTAGTTGTATAAGATATCCGACTGTCTGAGTTCGGAAGTGTTTGAGCCTCCTACCCTCCCCCTGCGTTGTTTAGCTAATTAAAAAAGGAGAAAACTGTTTATTGATGATCTCTGTCTTCATGCACAGTTTGTTCTCATGACAGGTTGGTCATGATGTTGACCA</genome_strand>
        <mrna_strand>TTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTTCCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTTCCTAGAGAGGGCAATTATTGGAGTTATGACAAATGTATACGCCAGTGGAACCTCGCGGATAGTCAACACTTGTGATACAAC.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAACGCCTTTGATAGAGCTATGAATGCACTCCACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATTGTAAGCAGCATCGATGATGATAATGAG............................................................................................................................................................................GGTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCTAATTACACATACCAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA............................................................................................................................................................................................................................................GATGGTCATGATGTTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239809" ref_strand="+" ref_description="SGN-E239809 [cLED-29-I14]">
      <seq>ttctggcatgtcttgcttgacagatgcttctcctgttgttgatcgaggaattgcgcttcacaagatgatccactttttcacaatggccttgggaggagaggggtacctcaatttcatgggtaacgagtttggccatcctgagtggattgacttccctagagagggcaataattggagttatgacaaatgtagacgccagtggaacctcgcggatagtcaacacttgagatacaagttcatgaacgcatttgatagagctatgaattcactcgacgagaagttctcattccttgcatcaggaaaacagatagtaagcagcatcgatgatgataataaggttgttgtgtttgaacgtggtgacctggtatttgtattcaacttccacccaaataacacatacgaagggtataaagttggatgtgacttgccagggaagtacagagttgcactggacagtgatgcttgggaatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="47862" stop="45615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47562" g_stop="47499" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="127" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46946" g_stop="46839" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.278" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46469" g_stop="46368" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="337" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46195" g_stop="46128" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="405" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45985" g_stop="45915" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="476" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E239809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47562" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46839"/>
          <exon e_start="46469" e_stop="46368"/>
          <exon e_start="46195" e_stop="46128"/>
          <exon e_start="45985" e_stop="45915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAGGTTCAGTATTTTGAATCGCAGCTTGTTAAATATCTAGTAATTTTTAGATTGCTTACTTGGAAGTCTACTTGATTCAGGGGAGGATAGCCCATTTCATTTTGCTCTCTACTTATTTTCCATCGAATTTCTGATTTTTGTTTAGAGATCCAAGTATTAGATTCATTTACACTAATTACCGCATCATTTACTACCACTAAGGCCTTGATGAGCAGCTTAAGTTGATTCTTTAAGGCTATAATTTCAGGCTACCAATCCACTGCCTGCTATATTTGTTGGACACTTTTATTTACATGAAGTGATACTAATGGAAATGCCCTAATCTGATATCTATATTCCTCCGTCTTTCCTCCCCCTCGTGATGGAATGCAGTTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAGGTAAAATCATCTAACGTTGAAATGTTGGGTTTATGAATGCTTTAATTCTATCCCAACGACAAGTAGAAACCTTTTTACCTTCCATTTCTTGATGATGGATTTCATATTATTTAATCCAATAGCTTGTCAAATTCGGTAATATCTATACTGATTTATTTACTTCACTTTGCAGGTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGGGTATATATGTTTTACTTATCATGAAATTATTCCTCTGCTTGTTTTTAATGACTCAGCAAGTTTTATGGAGAAGTAACTGAAACAAATCATTTTCACATTGTCTATTTTAACTCTTTTTCTGATCTTCACATGACGAAAACAGGTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTG</genome_strand>
        <mrna_strand>TTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................TTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAG............................................................................................................................................................................GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG..............................................................................................................................................GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261022" ref_strand="+" ref_description="SGN-E261022 [cLEG-55-M14]">
      <seq>ggttctcaagaatcctactttcatgccggagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctagaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatggggtttacaggaaactataatgagtatttcagcgaggctacagatgttgatgctgtcgtctatttaatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcatgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaacaagaatgatgaagattggtccatgaaggaagtaacatcgagtttgacaaataggagatatacagagaagtgtatagcatatgctgagagccatgatcagtctattgtcggtgacaagaccattgcatttctcctaatggacaaagagatgtattctggcatgtcttgcttgacagatgcttctcctgttgttgatcgaggaattgcgcttcacaagatgatccactttttcacatggccttggggaggagaggggtacctcaatttcatgggtaacgagtttggccatcctgagtggattgacttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48644" stop="46617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48344" g_stop="47811" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47810" i_stop="47616" i_length="195">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47615" g_stop="47499" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="651" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47303" g_stop="47241" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="714" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46946" g_stop="46917" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="744" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E261022" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48344" e_stop="47811"/>
          <exon e_start="47615" e_stop="47499"/>
          <exon e_start="47303" e_stop="47241"/>
          <exon e_start="46946" e_stop="46917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAGGTATTTTAAATTTATTTCTACAGCAAAATAATTCTCAGAACAATTGCTAGATAGAACCCAAATATACTTGTCCTGAAAGTATAAAGTACTTCTATCGCCATGGGCTTCAGAACATTGGTAGCCATTTAATCACAAGATAAGTTATTTATCCGGTGACATTTTTATGTTCACTCTTATTATGTCTGCTGGATACAGTCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAGGTTTGTCTGTTGGTATTGCATTTAAGGTTCATATAGGTTAGCCACGGAAAATCTCACTCTTTGTGAGGTAACCAGGGTTCCGATGGATTATTCAATTTTCTGTTTATCCTTTTTATGCTTTGTGTTTCTTTTTCAATATCCCTCTTATTTGGAGGTAATTTTTCTCATCTATTCACTTTTAGCTTCTAACCACAGATGATCCACTTTTTCACAATGGCCTT-GGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAGGTATGTCTTACAGCTTTAGATATTTTTTGATAATTACAATTAGTTTGGCTTACTTGAACAAGATTCATTCCTTAAAATGACCTGAACTGTTGAGCTTCAAAGGGGTTGAAACATAGAGAGAAACAACACGATGAATGTTTCCATTGTCTAGGGATTTTTTTTGTGTTGCTGAGATCACACGTCATCTTAGATATTACATTTTTTACTTTTTTATTGTATAGAAGATTACCTTAAAGAGTTTGCAAGTGTGTCTGTTTTGAAGTAATTGTGAAATGTTTGATGAACTTGTTACAGTTTGGCCATCCTGAGTGGATTGACTTCCCT</genome_strand>
        <mrna_strand>GGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAG...................................................................................................................................................................................................TCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG...................................................................................................................................................................................................ATGATCCACTTTTTCAC-ATGGCCTTGGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG......................................................................................................................................................................................................................................................................................................TTTGGCCATCCTGAGTGGATTGACTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251041" ref_strand="+" ref_description="SGN-E251041 [cLEG-17-N11]">
      <seq>ggttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaagtggtggctagaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatggggtttacaggaaactataatgagtatttcagcgaggctacagatgttgatgctgtcgtctatttaatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcatgtttctgaaggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaacaagaatgatgaagattggtccatgaaggaagtaacatcgagtttgacaaataggagatatacagagaagtgtatagcatatgctgagagccatgatcaggtattctaaatttatttcttacagcaaaataattcttaaaacaattgctagatagaacccaaatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48579" stop="47442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48280" g_stop="47742" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E251041" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48280" e_stop="47742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAGGTATTTTAAATTTATTTC-TACAGCAAAATAATTCTCAGAACAATTGCTAGATAGAACCCAAATATACTT</genome_strand>
        <mrna_strand>GGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAAGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAAGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAGGTATTCTAAATTTATTTCTTACAGCAAAATAATTCTTAAAACAATTGCTAGATAGAACCCAAATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257665" ref_strand="+" ref_description="SGN-E257665 [cLEG-39-K9]">
      <seq>ggttctcaagaatcctactttcatgcctgagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcttttccttctttccaacttgaggtggtggctagaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatggggtttacaggaaactataatgagtatttcagcgaggctacagatgttgatgctgtcgtctatataatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcatgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaacaagaatgatgaagattggtccatgaaggaagtaacatcgagtttgacaaataggagatataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48644" stop="47547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48344" g_stop="47847" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E257665" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48344" e_stop="47847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACA</genome_strand>
        <mrna_strand>GGTTCTCAAGAATCCTACTTTCATGCCTGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCTTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATATAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355915" ref_strand="+" ref_description="SGN-E355915 [cLHT-12-N6]">
      <seq>tttcatgcttgagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctagaagaatataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatgggatttacaggaaactataaagagtatttcagcgaggctacagatgttgatgctgtcgtctatttaatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcctgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaataagaatgatgaacattggtccatgaaggaagtaacatcgagtttgacaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48626" stop="47558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48326" g_stop="47858" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E355915" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48326" e_stop="47858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATA</genome_strand>
        <mrna_strand>TTTCATGCTTGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAATATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGATTTACAGGAAACTATAAAGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCCTGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAATAAGAATGATGAACATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208836" ref_strand="+" ref_description="SGN-E208836 [cLEC-51-G15]">
      <seq>tcacagtctagcaagcaataatgtcactgatggcctcaatggctttgatattggccaaggttctcaagaatcctactttcatgccggagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctagaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatggggtttacaggaaactataatgagtatttcagcgaggctacagatgttgatgctgtcgtctatttaatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcatgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaacaagaatgatgaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48702" stop="47593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48402" g_stop="47893" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E208836" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48402" e_stop="47893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTG</genome_strand>
        <mrna_strand>TCACAGTCTAGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262650" ref_strand="+" ref_description="SGN-E262650 [cLEG-63-N10]">
      <seq>ggttctcaagaatcctactttcatgccggagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctagaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatggggtttacaggaaactataatgagtatttcagcgaggctacagatgttgatgctgtcgtctatttaatgttggccaataatctgattcacaagattttcccagacgcaactgttattgccgaagatgtttctggtatgccgggccttggccggcatgtttctgagggaggaattggttttgattatcgcctggcgatggcaatcccagataagtggatagattatgtaaagaacaagaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48644" stop="47599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48344" g_stop="47899" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E262650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48344" e_stop="47899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGA</genome_strand>
        <mrna_strand>GGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263874" ref_strand="+" ref_description="SGN-E263874 [cLEG-73-G8]">
      <seq>gttctcaagaatcctactttcatgccggagagcgatggtaccataacttgtgggatagcatgctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctaaaaaactataactttgacggatttctatttgatggaataacttctatgttgtatgatcatcatggaatcaatatggggtttacaggaaactataatgagtatttcatcgaggctacatatgttgatgctgtcgactatttaatggtagccaataatctgattcacaagattttcccacacgccactgttattgccgaagatgtttctggtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48643" stop="47705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48343" g_stop="48005" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E263874" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48343" e_stop="48005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGC</genome_strand>
        <mrna_strand>GTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGATGGTACCATAACTTGTGGGATAGCATGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAAAAAACTATAACTTTGACGGATTTCTATTTGATGGAATAACTTCTATGTTGTATGATCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCATCGAGGCTACATATGTTGATGCTGTCGACTATTTAATGGTAGCCAATAATCTGATTCACAAGATTTTCCCACACGCCACTGTTATTGCCGAAGATGTTTCTGGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244837" ref_strand="+" ref_description="SGN-E244837 [cLEF-2-C24]">
      <seq>ttcacagtcatgcaagcaataatgttactgatggcctcaatggcttcgatattggccaaggttctcaagaatcctactttcatgccggagagcgagggtaccataagttgtgggatagcaggctgttcaactatgccaattgggaggttcttcgtttccttctttccaacttgaggtggtggctacaagagtataactttgacggatttcgatttgatggaataacttctatgttgtatgttcatcatggaatcaatatggggtttacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="48703" stop="47833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48403" g_stop="48133" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E244837" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48403" e_stop="48133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGG</genome_strand>
        <mrna_strand>TTCACAGTCATGCAAGCAATAATGTTACTGATGGCCTCAATGGCTTCGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTACAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337224" ref_strand="+" ref_description="SGN-E337224 [cTOE-7-O1]">
      <seq>tccagagttaagttccgtttcaagcatggcgagggagcgtgggtagatcgtatccctgcttggataaagtatgccactgtagacgccacaaagtttgcagcaccatatgatggtgtctactgggacccaccgccttctgaaaggtacaacttcaaataccctcgcccttccaaaccccgagccccacgaatctacgaagcacatgtcggcatgagcagctcagagccacgtgtaaattcgtatcgtgagtttgcagatgatgttttacctcgaattaaggcaaataactataatactgtccagttgatggccataatggaacattcttactatggatcatttgggtatcatgttacaaacttttttgctgtgagcagtagatctggaaatccggaggacctaaagtatctgatagataaagcacatagcttgggtttacaggttctggtggatgtagttcacagtcatgcaagcaataatgtcactgatggcctcaatggctttgatattggccaaggttctcaagaatcctactttcatgccggagagcgagggtaccataagttgtgggatagcaggctgttcaactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="49375" stop="47968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49075" g_stop="48933" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="48718" i_length="215">
            <donor d_prob="0.150" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48717" g_stop="48268" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="593" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E337224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49075" e_stop="48933"/>
          <exon e_start="48717" e_stop="48268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAGGTTTCGTTATTCATACCTTGAAGCTGAATTTTGAACACCATCTTCACAGGCATTTAGATTCATGTTCTTGCTAGTCTTTTTATGTAAGACATTTTGAAATGCAAAAGCTAAAATAATGTGTCTTTACTAATTTGGACTTGATCCATACTCTTCCCCTTAACAAAATAAATCAATCTATAAGTGCTTGATAACTTACTACTTCAGCAATTAAACAGGTACAACTTCAAATACCCTCGCCCTTCCAAACCCCGAGCCCCACGAATCTACGAAGCACATGTCGGCATGAGCAGCTCAGAGCCACGTGTAAATTCGTATCGTGAGTTTGCAGATGATGTTTTACCTCGAATTAAGGCAAATAACTATAATACTGTCCAGTTGATGGCCATAATGGAACATTCTTACTATGGATCATTTGGGTATCATGTTACAAACTTTTTTGCTGTGAGCAGTAGATCTGGAAATCCGGAGGACCTAAAGTATCTGATAGATAAAGCACATAGCTTGGGTTTACAGGTTCTGGTGGATGTAGTTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGC</genome_strand>
        <mrna_strand>TCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAG.......................................................................................................................................................................................................................GTACAACTTCAAATACCCTCGCCCTTCCAAACCCCGAGCCCCACGAATCTACGAAGCACATGTCGGCATGAGCAGCTCAGAGCCACGTGTAAATTCGTATCGTGAGTTTGCAGATGATGTTTTACCTCGAATTAAGGCAAATAACTATAATACTGTCCAGTTGATGGCCATAATGGAACATTCTTACTATGGATCATTTGGGTATCATGTTACAAACTTTTTTGCTGTGAGCAGTAGATCTGGAAATCCGGAGGACCTAAAGTATCTGATAGATAAAGCACATAGCTTGGGTTTACAGGTTCTGGTGGATGTAGTTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738267" ref_strand="+" ref_description="SGN-E738267 [LC13AB05]">
      <seq>caataggcgaaagctgaagcaaagtagcataatttgatcaatggaaattaatttcaatgttttatcaaaacccattcgaggatcttttccattttcctcacctagagtttctccacgggcttctagaactaagatatgttttccttctcaacatagtactggactgaagttcggatctgagggacggtcttgggatatttctagcaccccaaaatcaagagttagaaaagatgaaaggatgaagcacagctcagctatttccgctgttttgaccaatgataactcgacaatggcatccagagaggaagatgtcaagactgaaaatattggcctcctaaatttggatccagctttggaaccttatctagatcacttcagatacagaatgaagagatatgtggatcagaaaatgctcattcaaaaatatgagggaggccttgaggaatttgctcaaggttatttaaaatttggattcaacagggaagatggttgcatagtctatcgtgaatgggctcctgctgctcaggaagcagaagttattggtgatttcaacggatggaacggttccaaccacatgatggagaaggaccagtttggtgtttggagtattagaattcctgatgttgacagtaagccagccattccacacaactccagagttaagttccgtttcaagcatggcgagggagcgtgggtagatcgtatccctgcttggataaagtatgccactgtagacgccacaaagtttgcagcaccatatgatggtgtctactgggacccaccgccttctgaaaggtacaacttcaaataccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="52214" stop="48398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51918" g_stop="51801" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50564" g_stop="50445" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="238" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50124" g_stop="49908" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="455" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49416" g_stop="49347" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="525" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49202" g_stop="48933" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="795" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48932" i_stop="48718" i_length="215">
            <donor d_prob="0.150" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48717" g_stop="48698" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="815" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E738267" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51918" e_stop="51801"/>
          <exon e_start="50564" e_stop="50445"/>
          <exon e_start="50124" e_stop="49908"/>
          <exon e_start="49416" e_stop="49347"/>
          <exon e_start="49202" e_stop="48933"/>
          <exon e_start="48717" e_stop="48698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGGGTAATTTTTTTTACTAATTTCATGTTAATTTCAGTTGATTTTAGCCTTTTCATTATATTTTCCTGTAGTTCTGGATCGTCTCCTTAAATTTTTTTTAATATATAATATCATTTATGGAAGAAAAATGACACTTATAGAACCTTACGTAGTATCATGTGACAAATTTGTAAGATGGTTGAGTGTATAAAAATCAAAAACTGAGAGATGATGGGTGTGTGGGGAGAGACCATATTTAGAAAGAGTGTTGTAGGAGGTTATGGAGGACACAGATGAGGGGTAGAAGGTCAGTTAGGTATTTGAGTGTTGTTTCACTTATCCTTTTATACTAGTAGTCGTGGAATTAGTTGGGTAGTTTCTTGTTTTGTTATTTGATCTTTGTTACTGTTTTCTGTTTCTTGTACTTTGATTTTTGTATTATATATCTTGTTGTAGTTATTGTTCCTCGGTTTCGAATGCTCTAACATGCTTCCTTTTGTGTTTTATCATGGCTTCTTCATATTCGCGTTGCTTTGAAATGCTTTTACTTTAGCTGAGGTCTATTAAAACAATCTTTCTATCTCGTTAGGGGTAAGGTCCTCCCCCAACTCCACTTGTAGGATTACGTTGTGTTTGTTGTTGTAAATCAATTATGTATACATAACAAGTGGATTTTTTACAACACAAACACAGGGTCAAGGCCAAAGTTCTGAACAAATGGACATGCTTTTAGCTCTTTCCCTGGATGGAAGAGGAGTAAAAGTAAACATTATACCCTACAACTCTATTATTAGCCTAAACGGTTCATTATATGTCCAGGGAAATGATAAAAATTGTTTCTTTCTGAAGTTATATAAGATTTGTTATGGATGTTGCTGGAAACATAATAAGTTATAATGCGAGATAGCTACTGAAGTTTGTTTTTTCTAGCCTTTTGAATGTACCAGTGATAGATTCAGTATCGAACGAGAGTGTATTGATTACCTGGTCATGATGTTTCTTATTTTTACATTTTTCTTTTGGTGTTGGACTGCAATTGAAAATGTTGTATCATATGAGACGGATAATTGAGAATGTGTTCTTTGAATGGACCTTGAGAAGCTCAAATGCCTACTCCAATAATTTCTATGAATTCAAATTCAGTTTATGGCTACGAGTCAGTTCAGAGATTAGGATATGCTGCATGTACATGTTCAATTATACTGCAAGATTTCATAAGTTCTCAAGATATCCATGTAACCTCGAGAATTTCTTTGACAGGCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGGGTATGTTTGATAATTGATATGGTTGCACGGATAGTATATAAATAGTTGGAAAATTTCTGGACTGGTGTTCATAGCATATTTGATCTGTGCACCATGTGGAGACGTCAAACATGTGTTACTTTGTCCCGCCAACTTAAATTACCTTAACTTGGGAAAGGAGCTCTTTACTCCTGCGGGCATTTGTTATTTGAATTACAATCTTTATGAGCATGGTGTTTCCACATTATCAACTTCTTTCGTGTTGTATATAACAGTTTTTAGCTCCGTTGATACCTTTCTTCCTTTTGATATAAACTCACTGTGGTGCATTGCTTGCTTAGATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAGGTAAGAGCCAAGAGTTGTGCTTTAGGCAGTTTGACCTTATTGTGGAAGATGAATTGATTATACCTACTTTGACTTTGCTAGAGAATTTTGCATACCGGGGCGTAAGTAGTGGCTCCATTTAGGTGGCACGAAGCTATTTTTCAATCTTTTAAAAAGCTGTTTGATTGGGTCTTCAAGAAAGTACACAAGTTTTTTGGAGAAGTGACACACCCCTAGGTGTCAGTGGCAAAGCCAAGATTTTCACTAAGGAGATTTGAAATATAAGAAATATACACACAAAGAAGCTGAGGGGATTCAACATGTACTGTATAAGCATCAAATATGGTCTTAAAGCAATTTTGTAGAAAAAAAGAAAGTCTTCCTTCTGTTGCTTCACAATTTCCTTCTATAATCATGGGTTACTCTTTCTGTTCAAAATAGCTTCCTTAATATTGATTTTTGTTGAGATTTAGCAGGTTTTTCTTTTGTAAACTGCTCTCTTTTTTTTGCAGGTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCAGTAGGTCCTCCTCTACTACAAAATAGTAGTTTCCATCATCATAACTGATTTCCTTTTAAAGCATGGTGTTCCAGCATTATTGGCTTTTTACATCTTCTAATTGCTATTAAGGTTATGCTTCTAATTAACTCATCCACAATGCAGGGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAGGTTTCGTTATTCATACCTTGAAGCTGAATTTTGAACACCATCTTCACAGGCATTTAGATTCATGTTCTTGCTAGTCTTTTTATGTAAGACATTTTGAAATGCAAAAGCTAAAATAATGTGTCTTTACTAATTTGGACTTGATCCATACTCTTCCCCTTAACAAAATAAATCAATCTATAAGTGCTTGATAACTTACTACTTCAGCAATTAAACAGGTACAACTTCAAATACCCTC</genome_strand>
        <mrna_strand>CAATAGGCGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGG................................................................................................................................................................................................................................................................................................................................ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCA................................................................................................................................................GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAG.......................................................................................................................................................................................................................GTACAACTTCAAATACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328895" ref_strand="+" ref_description="SGN-E328895 [cTOC-24-O16]">
      <seq>aaggcgaaagctgaagcaaagtagcataatttgatcaatggaaattaatttcaatgttttatcaaaacccattcgaggatcttttccattttcctcacctagagtttctccacgggcttctagaactaagatatgttttccttctcaacatagtactggactgaagttcggatctgagggacggtcttgggatatttctagcaccccaaaatcaagagttagaaaagatgaaaggatgaagcacagctcagctatttccgctgttttgaccaatgataactcgacaatggcatccagagaggaagatgtcaagactgaaaatattggcctcctaaatttggatccagctttggaaccttatctagatcacttcagatacagaatgaagagatatgtggatcagaaaatgctcattcaaaaatatgagggaggccttgaggaatttgctcaaggttatttaaaatttggattcaacagggaagatggttgcatagtctatcgtgaatgggctcctgctgctcaggaagcagaagttattggtgatttcaacggatggaacggttccaaccacatgatggagaaggaccagtttggtgtttggagtattagaattcctgatgttgacagtaagccagccattccacacaactccagagttaagttccgtttcaagcatggcgagggagcgtgggtagatcgtatccctgcttgggataagtatgccactgtagacgccacaagtttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="52215" stop="48677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51915" g_stop="51801" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50564" g_stop="50445" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="235" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50124" g_stop="49908" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="452" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49416" g_stop="49347" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="522" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49202" g_stop="48977" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="747" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E328895" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51915" e_stop="51801"/>
          <exon e_start="50564" e_stop="50445"/>
          <exon e_start="50124" e_stop="49908"/>
          <exon e_start="49416" e_stop="49347"/>
          <exon e_start="49202" e_stop="48977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGGGTAATTTTTTTTACTAATTTCATGTTAATTTCAGTTGATTTTAGCCTTTTCATTATATTTTCCTGTAGTTCTGGATCGTCTCCTTAAATTTTTTTTAATATATAATATCATTTATGGAAGAAAAATGACACTTATAGAACCTTACGTAGTATCATGTGACAAATTTGTAAGATGGTTGAGTGTATAAAAATCAAAAACTGAGAGATGATGGGTGTGTGGGGAGAGACCATATTTAGAAAGAGTGTTGTAGGAGGTTATGGAGGACACAGATGAGGGGTAGAAGGTCAGTTAGGTATTTGAGTGTTGTTTCACTTATCCTTTTATACTAGTAGTCGTGGAATTAGTTGGGTAGTTTCTTGTTTTGTTATTTGATCTTTGTTACTGTTTTCTGTTTCTTGTACTTTGATTTTTGTATTATATATCTTGTTGTAGTTATTGTTCCTCGGTTTCGAATGCTCTAACATGCTTCCTTTTGTGTTTTATCATGGCTTCTTCATATTCGCGTTGCTTTGAAATGCTTTTACTTTAGCTGAGGTCTATTAAAACAATCTTTCTATCTCGTTAGGGGTAAGGTCCTCCCCCAACTCCACTTGTAGGATTACGTTGTGTTTGTTGTTGTAAATCAATTATGTATACATAACAAGTGGATTTTTTACAACACAAACACAGGGTCAAGGCCAAAGTTCTGAACAAATGGACATGCTTTTAGCTCTTTCCCTGGATGGAAGAGGAGTAAAAGTAAACATTATACCCTACAACTCTATTATTAGCCTAAACGGTTCATTATATGTCCAGGGAAATGATAAAAATTGTTTCTTTCTGAAGTTATATAAGATTTGTTATGGATGTTGCTGGAAACATAATAAGTTATAATGCGAGATAGCTACTGAAGTTTGTTTTTTCTAGCCTTTTGAATGTACCAGTGATAGATTCAGTATCGAACGAGAGTGTATTGATTACCTGGTCATGATGTTTCTTATTTTTACATTTTTCTTTTGGTGTTGGACTGCAATTGAAAATGTTGTATCATATGAGACGGATAATTGAGAATGTGTTCTTTGAATGGACCTTGAGAAGCTCAAATGCCTACTCCAATAATTTCTATGAATTCAAATTCAGTTTATGGCTACGAGTCAGTTCAGAGATTAGGATATGCTGCATGTACATGTTCAATTATACTGCAAGATTTCATAAGTTCTCAAGATATCCATGTAACCTCGAGAATTTCTTTGACAGGCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGGGTATGTTTGATAATTGATATGGTTGCACGGATAGTATATAAATAGTTGGAAAATTTCTGGACTGGTGTTCATAGCATATTTGATCTGTGCACCATGTGGAGACGTCAAACATGTGTTACTTTGTCCCGCCAACTTAAATTACCTTAACTTGGGAAAGGAGCTCTTTACTCCTGCGGGCATTTGTTATTTGAATTACAATCTTTATGAGCATGGTGTTTCCACATTATCAACTTCTTTCGTGTTGTATATAACAGTTTTTAGCTCCGTTGATACCTTTCTTCCTTTTGATATAAACTCACTGTGGTGCATTGCTTGCTTAGATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAGGTAAGAGCCAAGAGTTGTGCTTTAGGCAGTTTGACCTTATTGTGGAAGATGAATTGATTATACCTACTTTGACTTTGCTAGAGAATTTTGCATACCGGGGCGTAAGTAGTGGCTCCATTTAGGTGGCACGAAGCTATTTTTCAATCTTTTAAAAAGCTGTTTGATTGGGTCTTCAAGAAAGTACACAAGTTTTTTGGAGAAGTGACACACCCCTAGGTGTCAGTGGCAAAGCCAAGATTTTCACTAAGGAGATTTGAAATATAAGAAATATACACACAAAGAAGCTGAGGGGATTCAACATGTACTGTATAAGCATCAAATATGGTCTTAAAGCAATTTTGTAGAAAAAAAGAAAGTCTTCCTTCTGTTGCTTCACAATTTCCTTCTATAATCATGGGTTACTCTTTCTGTTCAAAATAGCTTCCTTAATATTGATTTTTGTTGAGATTTAGCAGGTTTTTCTTTTGTAAACTGCTCTCTTTTTTTTGCAGGTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCAGTAGGTCCTCCTCTACTACAAAATAGTAGTTTCCATCATCATAACTGATTTCCTTTTAAAGCATGGTGTTCCAGCATTATTGGCTTTTTACATCTTCTAATTGCTATTAAGGTTATGCTTCTAATTAACTCATCCACAATGCAGGGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCA</genome_strand>
        <mrna_strand>AAGGCGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGG................................................................................................................................................................................................................................................................................................................................ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCA................................................................................................................................................GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGGATAAGTATGCCACTGTAGACGCCAC-AAGTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208773" ref_strand="+" ref_description="SGN-E208773 [cLEC-51-F15]">
      <seq>atagtctatcgtgaatgggctcctgctgctcaggaagcagaagttattggtgatttcaacggatggaacggttccaaccacatgatggagaaggaccagtttggtgtttggagtattagaattcctgatgttgacagtaagccagccattccacacaactccagagttaagttccgtttcaagcatggcgagggagcgtgggtagatcgtatccctgtttggataaagtatgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="49678" stop="48699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49378" g_stop="49347" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49202" g_stop="48999" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="236" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E208773" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49378" e_stop="49347"/>
          <exon e_start="49202" e_stop="48999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTCTATCGTGAATGGGCTCCTGCTGCTCAGTAGGTCCTCCTCTACTACAAAATAGTAGTTTCCATCATCATAACTGATTTCCTTTTAAAGCATGGTGTTCCAGCATTATTGGCTTTTTACATCTTCTAATTGCTATTAAGGTTATGCTTCTAATTAACTCATCCACAATGCAGGGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCAC</genome_strand>
        <mrna_strand>ATAGTCTATCGTGAATGGGCTCCTGCTGCTCA................................................................................................................................................GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGTTTGGATAAAGTATGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369110" ref_strand="+" ref_description="SGN-E369110 [TUS-23-I12]">
      <seq>aagctgaagcaaagtagcataatttgatcaatggaaattaatttcaatgttttatcaaaacccattcgaggatcttttccattttcctcacctagagtttctccacgggcttctagaactaagatatgttttccttctcaacatagtactggactgaagttcggatctgagggacggtcttgggatatttctagcaccccaaaatcaagagttagaaaagatgaaaggatgaagcacagctcagctatttccgctgttttgaccaatgataactcgacaatggcatccagagaggaagatgtcaagactgaaaatattggcctcctaaatttggatccagctttggaaccttatctagatcacttcagatacagaatgaagagatatgtggatcagaaaatgctcattcaaaaatatgagggaggccttgaggaatttgctcaaggttatttaaaatttggattcaacagggaagatggttgcatagtctatcgtgaatgggctcctgctgctcaggaagcagaagttattggtgatttcaacggatggaacggttccaaccacatgatggagaaggaccagtttggtgtttggagtattagaattcctgatgttgacagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="52208" stop="48796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51908" g_stop="51801" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50564" g_stop="50445" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50124" g_stop="49908" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="445" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49416" g_stop="49347" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="515" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49202" g_stop="49096" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="622" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E369110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51908" e_stop="51801"/>
          <exon e_start="50564" e_stop="50445"/>
          <exon e_start="50124" e_stop="49908"/>
          <exon e_start="49416" e_stop="49347"/>
          <exon e_start="49202" e_stop="49096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGGGTAATTTTTTTTACTAATTTCATGTTAATTTCAGTTGATTTTAGCCTTTTCATTATATTTTCCTGTAGTTCTGGATCGTCTCCTTAAATTTTTTTTAATATATAATATCATTTATGGAAGAAAAATGACACTTATAGAACCTTACGTAGTATCATGTGACAAATTTGTAAGATGGTTGAGTGTATAAAAATCAAAAACTGAGAGATGATGGGTGTGTGGGGAGAGACCATATTTAGAAAGAGTGTTGTAGGAGGTTATGGAGGACACAGATGAGGGGTAGAAGGTCAGTTAGGTATTTGAGTGTTGTTTCACTTATCCTTTTATACTAGTAGTCGTGGAATTAGTTGGGTAGTTTCTTGTTTTGTTATTTGATCTTTGTTACTGTTTTCTGTTTCTTGTACTTTGATTTTTGTATTATATATCTTGTTGTAGTTATTGTTCCTCGGTTTCGAATGCTCTAACATGCTTCCTTTTGTGTTTTATCATGGCTTCTTCATATTCGCGTTGCTTTGAAATGCTTTTACTTTAGCTGAGGTCTATTAAAACAATCTTTCTATCTCGTTAGGGGTAAGGTCCTCCCCCAACTCCACTTGTAGGATTACGTTGTGTTTGTTGTTGTAAATCAATTATGTATACATAACAAGTGGATTTTTTACAACACAAACACAGGGTCAAGGCCAAAGTTCTGAACAAATGGACATGCTTTTAGCTCTTTCCCTGGATGGAAGAGGAGTAAAAGTAAACATTATACCCTACAACTCTATTATTAGCCTAAACGGTTCATTATATGTCCAGGGAAATGATAAAAATTGTTTCTTTCTGAAGTTATATAAGATTTGTTATGGATGTTGCTGGAAACATAATAAGTTATAATGCGAGATAGCTACTGAAGTTTGTTTTTTCTAGCCTTTTGAATGTACCAGTGATAGATTCAGTATCGAACGAGAGTGTATTGATTACCTGGTCATGATGTTTCTTATTTTTACATTTTTCTTTTGGTGTTGGACTGCAATTGAAAATGTTGTATCATATGAGACGGATAATTGAGAATGTGTTCTTTGAATGGACCTTGAGAAGCTCAAATGCCTACTCCAATAATTTCTATGAATTCAAATTCAGTTTATGGCTACGAGTCAGTTCAGAGATTAGGATATGCTGCATGTACATGTTCAATTATACTGCAAGATTTCATAAGTTCTCAAGATATCCATGTAACCTCGAGAATTTCTTTGACAGGCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGGGTATGTTTGATAATTGATATGGTTGCACGGATAGTATATAAATAGTTGGAAAATTTCTGGACTGGTGTTCATAGCATATTTGATCTGTGCACCATGTGGAGACGTCAAACATGTGTTACTTTGTCCCGCCAACTTAAATTACCTTAACTTGGGAAAGGAGCTCTTTACTCCTGCGGGCATTTGTTATTTGAATTACAATCTTTATGAGCATGGTGTTTCCACATTATCAACTTCTTTCGTGTTGTATATAACAGTTTTTAGCTCCGTTGATACCTTTCTTCCTTTTGATATAAACTCACTGTGGTGCATTGCTTGCTTAGATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAGGTAAGAGCCAAGAGTTGTGCTTTAGGCAGTTTGACCTTATTGTGGAAGATGAATTGATTATACCTACTTTGACTTTGCTAGAGAATTTTGCATACCGGGGCGTAAGTAGTGGCTCCATTTAGGTGGCACGAAGCTATTTTTCAATCTTTTAAAAAGCTGTTTGATTGGGTCTTCAAGAAAGTACACAAGTTTTTTGGAGAAGTGACACACCCCTAGGTGTCAGTGGCAAAGCCAAGATTTTCACTAAGGAGATTTGAAATATAAGAAATATACACACAAAGAAGCTGAGGGGATTCAACATGTACTGTATAAGCATCAAATATGGTCTTAAAGCAATTTTGTAGAAAAAAAGAAAGTCTTCCTTCTGTTGCTTCACAATTTCCTTCTATAATCATGGGTTACTCTTTCTGTTCAAAATAGCTTCCTTAATATTGATTTTTGTTGAGATTTAGCAGGTTTTTCTTTTGTAAACTGCTCTCTTTTTTTTGCAGGTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCAGTAGGTCCTCCTCTACTACAAAATAGTAGTTTCCATCATCATAACTGATTTCCTTTTAAAGCATGGTGTTCCAGCATTATTGGCTTTTTACATCTTCTAATTGCTATTAAGGTTATGCTTCTAATTAACTCATCCACAATGCAGGGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTA</genome_strand>
        <mrna_strand>AAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGG................................................................................................................................................................................................................................................................................................................................ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCA................................................................................................................................................GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359138" ref_strand="+" ref_description="SGN-E359138 [cLHT-11-P20]">
      <seq>cgaaagctgaagctaagtaccataatttgatcaatggaaattaatttcaatgttttatcaaaacccattcgaggatcttttccatcttcctcacctagagtttctccacgggcttctagaaataagatatgtcttccttctcaacatagtactggactgaagttcggatctcagggacggtcttgggatatttctaacaccccaaaatcaagagttagaaacgatgaaaggatgaagcacagctcagctatttccgctgttttgaccaatgataactcgacaatggcatccagagaggaagatgtcaagactgaaaatattggcctcctaaatttggatccagctttggaaccttatctagatcacttcagatacagaatgaagagatatgtggatcagaaaatgctcattcaaaaatatgagggaggccttgaggaatttgctcaaggttatttaaaatttggattcaacagggaagatggttgcatagtctatcgtgaatgggctcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="52211" stop="49052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51911" g_stop="51801" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50564" g_stop="50445" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="231" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320">
            <donor d_prob="0.861" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50124" g_stop="49908" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="448" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49416" g_stop="49352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="513" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E359138" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51911" e_stop="51801"/>
          <exon e_start="50564" e_stop="50445"/>
          <exon e_start="50124" e_stop="49908"/>
          <exon e_start="49416" e_stop="49352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGGGTAATTTTTTTTACTAATTTCATGTTAATTTCAGTTGATTTTAGCCTTTTCATTATATTTTCCTGTAGTTCTGGATCGTCTCCTTAAATTTTTTTTAATATATAATATCATTTATGGAAGAAAAATGACACTTATAGAACCTTACGTAGTATCATGTGACAAATTTGTAAGATGGTTGAGTGTATAAAAATCAAAAACTGAGAGATGATGGGTGTGTGGGGAGAGACCATATTTAGAAAGAGTGTTGTAGGAGGTTATGGAGGACACAGATGAGGGGTAGAAGGTCAGTTAGGTATTTGAGTGTTGTTTCACTTATCCTTTTATACTAGTAGTCGTGGAATTAGTTGGGTAGTTTCTTGTTTTGTTATTTGATCTTTGTTACTGTTTTCTGTTTCTTGTACTTTGATTTTTGTATTATATATCTTGTTGTAGTTATTGTTCCTCGGTTTCGAATGCTCTAACATGCTTCCTTTTGTGTTTTATCATGGCTTCTTCATATTCGCGTTGCTTTGAAATGCTTTTACTTTAGCTGAGGTCTATTAAAACAATCTTTCTATCTCGTTAGGGGTAAGGTCCTCCCCCAACTCCACTTGTAGGATTACGTTGTGTTTGTTGTTGTAAATCAATTATGTATACATAACAAGTGGATTTTTTACAACACAAACACAGGGTCAAGGCCAAAGTTCTGAACAAATGGACATGCTTTTAGCTCTTTCCCTGGATGGAAGAGGAGTAAAAGTAAACATTATACCCTACAACTCTATTATTAGCCTAAACGGTTCATTATATGTCCAGGGAAATGATAAAAATTGTTTCTTTCTGAAGTTATATAAGATTTGTTATGGATGTTGCTGGAAACATAATAAGTTATAATGCGAGATAGCTACTGAAGTTTGTTTTTTCTAGCCTTTTGAATGTACCAGTGATAGATTCAGTATCGAACGAGAGTGTATTGATTACCTGGTCATGATGTTTCTTATTTTTACATTTTTCTTTTGGTGTTGGACTGCAATTGAAAATGTTGTATCATATGAGACGGATAATTGAGAATGTGTTCTTTGAATGGACCTTGAGAAGCTCAAATGCCTACTCCAATAATTTCTATGAATTCAAATTCAGTTTATGGCTACGAGTCAGTTCAGAGATTAGGATATGCTGCATGTACATGTTCAATTATACTGCAAGATTTCATAAGTTCTCAAGATATCCATGTAACCTCGAGAATTTCTTTGACAGGCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGGGTATGTTTGATAATTGATATGGTTGCACGGATAGTATATAAATAGTTGGAAAATTTCTGGACTGGTGTTCATAGCATATTTGATCTGTGCACCATGTGGAGACGTCAAACATGTGTTACTTTGTCCCGCCAACTTAAATTACCTTAACTTGGGAAAGGAGCTCTTTACTCCTGCGGGCATTTGTTATTTGAATTACAATCTTTATGAGCATGGTGTTTCCACATTATCAACTTCTTTCGTGTTGTATATAACAGTTTTTAGCTCCGTTGATACCTTTCTTCCTTTTGATATAAACTCACTGTGGTGCATTGCTTGCTTAGATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAGGTAAGAGCCAAGAGTTGTGCTTTAGGCAGTTTGACCTTATTGTGGAAGATGAATTGATTATACCTACTTTGACTTTGCTAGAGAATTTTGCATACCGGGGCGTAAGTAGTGGCTCCATTTAGGTGGCACGAAGCTATTTTTCAATCTTTTAAAAAGCTGTTTGATTGGGTCTTCAAGAAAGTACACAAGTTTTTTGGAGAAGTGACACACCCCTAGGTGTCAGTGGCAAAGCCAAGATTTTCACTAAGGAGATTTGAAATATAAGAAATATACACACAAAGAAGCTGAGGGGATTCAACATGTACTGTATAAGCATCAAATATGGTCTTAAAGCAATTTTGTAGAAAAAAAGAAAGTCTTCCTTCTGTTGCTTCACAATTTCCTTCTATAATCATGGGTTACTCTTTCTGTTCAAAATAGCTTCCTTAATATTGATTTTTGTTGAGATTTAGCAGGTTTTTCTTTTGTAAACTGCTCTCTTTTTTTTGCAGGTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCT</genome_strand>
        <mrna_strand>CGAAAGCTGAAGCTAAGTACCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATCTTCCTCACCTAGAGTTTCTCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAGAAATAAGATATGTCTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTCAGGGACGGTCTTGGGATATTTCTAACACCCCAAAATCAAGAGTTAGAAACGATGAAAGG................................................................................................................................................................................................................................................................................................................................ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246261" ref_strand="+" ref_description="SGN-E246261 [cLEF-40-A10]">
      <seq>agctgaagcaaagtagcataatttgatcaatggaaattaatttcaatgttttatcaaaacccattcgaggatcttttccattttcctcacctagagtttctccacgggcttctagaactaagaaatgttttccttctcaacatagtactggactgaagttcggatctgagggacggtcttgggatatttctagcaccccaaaatcaaaagttagaaaagaataaaggatgaaacacaactcagctatttccgctgttttgaccaatgataactcgacaatggcatccagagaggaagaatgtcaagactgaaaatattggcctcctaaatttggatccagcgttggaaccttatctagatcacttcagatacagaatgaagagaatatgtggatcagaaaatgctcattcaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="52207" stop="49636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51907" g_stop="51801" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50564" g_stop="50445" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="227" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320">
            <donor d_prob="0.861" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50124" g_stop="49936" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="418" r_length="191" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E246261" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51907" e_stop="51801"/>
          <exon e_start="50564" e_stop="50445"/>
          <exon e_start="50124" e_stop="49936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGGGTAATTTTTTTTACTAATTTCATGTTAATTTCAGTTGATTTTAGCCTTTTCATTATATTTTCCTGTAGTTCTGGATCGTCTCCTTAAATTTTTTTTAATATATAATATCATTTATGGAAGAAAAATGACACTTATAGAACCTTACGTAGTATCATGTGACAAATTTGTAAGATGGTTGAGTGTATAAAAATCAAAAACTGAGAGATGATGGGTGTGTGGGGAGAGACCATATTTAGAAAGAGTGTTGTAGGAGGTTATGGAGGACACAGATGAGGGGTAGAAGGTCAGTTAGGTATTTGAGTGTTGTTTCACTTATCCTTTTATACTAGTAGTCGTGGAATTAGTTGGGTAGTTTCTTGTTTTGTTATTTGATCTTTGTTACTGTTTTCTGTTTCTTGTACTTTGATTTTTGTATTATATATCTTGTTGTAGTTATTGTTCCTCGGTTTCGAATGCTCTAACATGCTTCCTTTTGTGTTTTATCATGGCTTCTTCATATTCGCGTTGCTTTGAAATGCTTTTACTTTAGCTGAGGTCTATTAAAACAATCTTTCTATCTCGTTAGGGGTAAGGTCCTCCCCCAACTCCACTTGTAGGATTACGTTGTGTTTGTTGTTGTAAATCAATTATGTATACATAACAAGTGGATTTTTTACAACACAAACACAGGGTCAAGGCCAAAGTTCTGAACAAATGGACATGCTTTTAGCTCTTTCCCTGGATGGAAGAGGAGTAAAAGTAAACATTATACCCTACAACTCTATTATTAGCCTAAACGGTTCATTATATGTCCAGGGAAATGATAAAAATTGTTTCTTTCTGAAGTTATATAAGATTTGTTATGGATGTTGCTGGAAACATAATAAGTTATAATGCGAGATAGCTACTGAAGTTTGTTTTTTCTAGCCTTTTGAATGTACCAGTGATAGATTCAGTATCGAACGAGAGTGTATTGATTACCTGGTCATGATGTTTCTTATTTTTACATTTTTCTTTTGGTGTTGGACTGCAATTGAAAATGTTGTATCATATGAGACGGATAATTGAGAATGTGTTCTTTGAATGGACCTTGAGAAGCTCAAATGCCTACTCCAATAATTTCTATGAATTCAAATTCAGTTTATGGCTACGAGTCAGTTCAGAGATTAGGATATGCTGCATGTACATGTTCAATTATACTGCAAGATTTCATAAGTTCTCAAGATATCCATGTAACCTCGAGAATTTCTTTGACAGGCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGGGTATGTTTGATAATTGATATGGTTGCACGGATAGTATATAAATAGTTGGAAAATTTCTGGACTGGTGTTCATAGCATATTTGATCTGTGCACCATGTGGAGACGTCAAACATGTGTTACTTTGTCCCGCCAACTTAAATTACCTTAACTTGGGAAAGGAGCTCTTTACTCCTGCGGGCATTTGTTATTTGAATTACAATCTTTATGAGCATGGTGTTTCCACATTATCAACTTCTTTCGTGTTGTATATAACAGTTTTTAGCTCCGTTGATACCTTTCTTCCTTTTGATATAAACTCACTGTGGTGCATTGCTTGCTTAGATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAG-ATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAG-ATATGTGGATCAGAAAATGCTCATTCAAAAATAT</genome_strand>
        <mrna_strand>AGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTAGAACTAAGAAATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAAAGTTAGAAAAGAATAAAGG................................................................................................................................................................................................................................................................................................................................ATGAAACACAACTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGAATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCGTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGAATATGTGGATCAGAAAATGCTCATTCAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284999" ref_strand="+" ref_description="SGN-E284999 [cLER-19-E12]">
      <seq>aacattagttttatttttcttcacgaaaccgttcattgacagggaaaatgttgtatggttttcgtatttctcaatgatgtttacagtgtagtgttgtcatctctactcttgcctgttacatgtttttgagtttatgatcatgtttaatatcagaatatgaatgcaacatctattatatacataaaaatagctagtacatttcgtgtgcatgatcatctacgtcattggcattttgcatagattagggtatggtatatctgacattaattttagtaatttttgttacgtatacatagtaaatgttgaattaatcacatgaaaggtggaaattatattttgactttggctccagcaaatgcattggtgtagttgacctgtagctcactttaataataaaatggtattcaacggtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="54267" stop="53253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53967" g_stop="53551" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E284999" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53967" e_stop="53551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAATG</genome_strand>
        <mrna_strand>AACATTAGTTTTATTTTTCTTCACGAAACCGTTCATTGACAGGGAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATGTTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATGCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCATAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATGTTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCTCCAGCAAATGCATTGGTGTAGTTGACCTGTAGCTCACTTTAATAATAAAATGGTATTCAACGGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396186" ref_strand="+" ref_description="SGN-E396186 [TUS-24-J24](-)">
      <seq>agagagtaattatcacggctagtagccccatttcaagatgcactgatcccaaggtgttggtgtcaaggaacttccagggtacatctgttgctggacctcagatggaggggggaagaaacacttcgtggtggatggttgatattggtccggatcaccagggcattgcacgatatcatggttgtctagagtagtgctggtcagtataccttggatcaagatattgaaactcatgtgtaactactacacattgagacaggatggatcaagagcatttatcagacgttggaaccttcagggctctttggatgggaaaagctggacaaatctgagagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttcctttcagattctttcgagttctcatgaccggtcctactacagacgatactaacccctggaactgttgcatctgcttcttagaactctatggctattttcgttagctcggtgttggtttgaacattagttttatttttcttcatgaaacccttcatttacagtcaaaatgttgtatggttttcgtatttctcaatgatgtttacagtgtagtgttgtcatctctactcttgcctgttacatatttttgagtttatgatcatgtttaatatcagaatatgaattcaacatctattatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="55509" stop="53479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55209" g_stop="55133" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54961" g_stop="54881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="158" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54880" i_stop="54680" i_length="201">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54679" g_stop="54612" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="226" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54611" i_stop="54452" i_length="160">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54451" g_stop="54383" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="295" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54201" g_stop="53779" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="718" r_length="423" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E396186" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55209" e_stop="55133"/>
          <exon e_start="54961" e_stop="54881"/>
          <exon e_start="54679" e_stop="54612"/>
          <exon e_start="54451" e_stop="54383"/>
          <exon e_start="54201" e_stop="53779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAGGTATGAATAGGATGACATTCAATTATTGTGAAGTATCTTCTCCTTTTAAATTAATTTGAGAAAAAAAGAAAGAAATATTCTTTTGCTCTCTCTTTTTCATTGATGGCGTTAAGGACACAAAAGAGTGTGTTAGCTCCATAATATGAACGATGAAATTTTTTTTGGTCTCAGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAGGTTAGATTTATTGGTTTGTGTATAATTTAATTGTGTGTACTCAAGGGAGCTGAAAGAAGTTTTTGTAAAATAAGATGTATGTTGTAACTTAGACAATCACTTCGTCCGTGCTGATTCTCAGATTCATCTGTATTTTTAATTGACTTGTGAAAATGAAACATTTAAAATTGAACATCGATAACTTGCTTTTCTCATTGTAAGGGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAAGTGAACACTTATCTCTGCTCTTTTGGTTTCGTTAAAAGTACTCTCTCTCGTTTATAGCACACACAAACTGCATGTCAATATCCCTGATTGATTTTCCCATTTGGTATTCAACTAGAAGATGAAACATCTGACGCATTTAATATTTGATGAATCGATGCAGCTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATA</genome_strand>
        <mrna_strand>AGAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG...........................................................................................................................................................................GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG.........................................................................................................................................................................................................GGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAA................................................................................................................................................................CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG.....................................................................................................................................................................................GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230770" ref_strand="+" ref_description="SGN-E230770 [cLEL-35-J24](-)">
      <seq>cttcagggctctttgggatgggaaaagctggacaaatctgaaagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttcctttcagattctttcgagttctcatgaccggtcctactacagacgatactaacccctggaactgttgcatctgcttcttagaactctatggctattttcgttagctcggtgttggtttgaacattagttttatttttcttcatgaaacccttcatttacagtcaaaatgttgtatggttttcgtatttctcaatgatgtttacagtgtagtgttgtcatctctactcttgcctgttacatatttttgagtttatgatcatgtttaatatcagaatatgaattcaacaaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="54505" stop="53500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54388" g_stop="54383" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54201" g_stop="53779" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="430" r_length="424" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E230770" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54388" e_stop="54383"/>
          <exon e_start="54201" e_stop="53779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTT-GGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATA</genome_strand>
        <mrna_strand>CTTCAG.....................................................................................................................................................................................GGCTCTTTGGGATGGGAAAAGCTGGACAAATCTGAAAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACAAAAACAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543700" ref_strand="+" ref_description="SGN-E543700 [TUS-65-K11](-)">
      <seq>cagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgggtaaatcctgttttgtccaagagagtaattatcacggctagtagccccatttcaagatgcactgatcccaaggtgttggtgtcaaggaacttccagggtacatctgttgctggacctcagatggaggggggaagaaacacttcgtggtggatggttgatattggtccggatcaccagctcatgtgtaactactacacattgagacaggatggatcaagagcatttatcagacgttggaaccttcagggctctttggatgggaaaagctggacaaatctgagagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttcctttcagattctttcgagttctcatgaccggtcctactacagacgatactaacccctggaactgttgcatctgcttcttagaactctatggctattttcgttagctcggtgttggtttgaacattagttttatttttcttcatgaaacccttcatttacagtcaaaatgttgtatggttttcgtatttctcaatgatgtttacagtgtagtgttgtcatctctactcttgcctgttacatatttttgagtttatgatcatgtttaatatcagaatatgaattcaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="55762" stop="53500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55687" g_stop="55683" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55458" g_stop="55332" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="132" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55207" g_stop="55133" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54961" g_stop="54881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="288" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54451" g_stop="54383" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="357" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54201" g_stop="53791" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="768" r_length="411" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E543700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55687" e_stop="55683"/>
          <exon e_start="55458" e_stop="55332"/>
          <exon e_start="55207" e_stop="55133"/>
          <exon e_start="54961" e_stop="54881"/>
          <exon e_start="54451" e_stop="54383"/>
          <exon e_start="54201" e_stop="53791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAGGTAAATCCACAGCTGCAAAAAGCAATTAACCTTCCTCCTTTTGACTTGCTACCGTTCTAAAAAATATACTATTGTTTACCATCTCATTCTGTCATCTGTTTAACATTGGTAATTCATGTTTCAGAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAGGTATGAATAGGATGACATTCAATTATTGTGAAGTATCTTCTCCTTTTAAATTAATTTGAGAAAAAAAGAAAGAAATATTCTTTTGCTCTCTCTTTTTCATTGATGGCGTTAAGGACACAAAAGAGTGTGTTAGCTCCATAATATGAACGATGAAATTTTTTTTGGTCTCAGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAGGTTAGATTTATTGGTTTGTGTATAATTTAATTGTGTGTACTCAAGGGAGCTGAAAGAAGTTTTTGTAAAATAAGATGTATGTTGTAACTTAGACAATCACTTCGTCCGTGCTGATTCTCAGATTCATCTGTATTTTTAATTGACTTGTGAAAATGAAACATTTAAAATTGAACATCGATAACTTGCTTTTCTCATTGTAAGGGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAAGTGAACACTTATCTCTGCTCTTTTGGTTTCGTTAAAAGTACTCTCTCTCGTTTATAGCACACACAAACTGCATGTCAATATCCCTGATTGATTTTCCCATTTGGTATTCAACTAGAAGATGAAACATCTGACGCATTTAATATTTGATGAATCGATGCAGCTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATA</genome_strand>
        <mrna_strand>CAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG............................................................................................................................AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG...........................................................................................................................................................................GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG.....................................................................................................................................................................................GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366372" ref_strand="-" ref_description="SGN-E366372 [cLPT-1-M3]">
      <seq>agggtacatctgttgctggacctcagatggaggggggaaagaacgcttcgtggtggatggttgatattggtccggatcaccagctcatgtgtaactactacacattgagacaggatggatcaagagcatttatcagacgttggaaccttcagggctctttggatgggaaaagctggacaaatctgagagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttcctttcagattctttcgagttctcatgaccggtcctactacagacgatactaacccctggaactgttgcatctgcttcttagaactctatggctattttcgttagctcggtgttggtttgaacatagttttttatttttcttcacgaaacccttcatttacagtcaaaatgttgtatggttttcgtattcctcaatgatgtttacagtgtagtgttgtcatctctactcttgcctgttacttgtttttgagtttatgatcatgtttaatatcagaatatgaattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="55263" stop="53502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54963" g_stop="54881" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54451" g_stop="54383" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="152" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54201" g_stop="53802" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="553" r_length="401" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E366372" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366372" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54963" e_stop="54881"/>
          <exon e_start="54451" e_stop="54383"/>
          <exon e_start="54201" e_stop="53802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAGGTTAGATTTATTGGTTTGTGTATAATTTAATTGTGTGTACTCAAGGGAGCTGAAAGAAGTTTTTGTAAAATAAGATGTATGTTGTAACTTAGACAATCACTTCGTCCGTGCTGATTCTCAGATTCATCTGTATTTTTAATTGACTTGTGAAAATGAAACATTTAAAATTGAACATCGATAACTTGCTTTTCTCATTGTAAGGGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAAGTGAACACTTATCTCTGCTCTTTTGGTTTCGTTAAAAGTACTCTCTCTCGTTTATAGCACACACAAACTGCATGTCAATATCCCTGATTGATTTTCCCATTTGGTATTCAACTAGAAGATGAAACATCTGACGCATTTAATATTTGATGAATCGATGCAGCTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACAT-TAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAA</genome_strand>
        <mrna_strand>AGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAAGAACGCTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG.....................................................................................................................................................................................GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATAGTTTTTTATTTTTCTTCACGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTCCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACTTGTTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348190" ref_strand="+" ref_description="SGN-E348190 [cTOF-27-L20]">
      <seq>ttcccacttttgacactctggttaaataggccttaagatttctggaatttgagatcaccgattttcaaggcaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgccgatggagactagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgggtaaatcctgttttgtccaagaagagtaattatcacggctagtagccccatttcaagatgcactgatcccaaggtgttggtgtcaaggaacttccagggtacatctgttgctggacctcagatggaggggggaagaaacacttcgtggtggatggttgatattggtccggatcaccagctcatgtgtaactactacacattgagacaggatggatcaagagcatttatcagacgttggaaccttcagggctctttggatgggaaaagctggacaaatctgagagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttcctttcagattctttcgagttctcatgaccggtcctactacagacgatactaacccctggaactgttgcatctgcttcttagaactctatggctattttcgttagctcggggttggtttgaacattagttttatttttcttcatgaaacccttcatttcagtcaaaatgttgtatggtttttcgtatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="56044" stop="53597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55875" g_stop="55856" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="79" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.525" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55458" g_stop="55332" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="208" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55207" g_stop="55133" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="284" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54961" g_stop="54881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="365" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54451" g_stop="54383" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="434" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54201" g_stop="53897" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="739" r_length="305" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E348190" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55875" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55332"/>
          <exon e_start="55207" e_stop="55133"/>
          <exon e_start="54961" e_stop="54881"/>
          <exon e_start="54451" e_stop="54383"/>
          <exon e_start="54201" e_stop="53897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATG-CGATGGAGA-TAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAGGTAAATCCACAGCTGCAAAAAGCAATTAACCTTCCTCCTTTTGACTTGCTACCGTTCTAAAAAATATACTATTGTTTACCATCTCATTCTGTCATCTGTTTAACATTGGTAATTCATGTTTCAG-AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAGGTATGAATAGGATGACATTCAATTATTGTGAAGTATCTTCTCCTTTTAAATTAATTTGAGAAAAAAAGAAAGAAATATTCTTTTGCTCTCTCTTTTTCATTGATGGCGTTAAGGACACAAAAGAGTGTGTTAGCTCCATAATATGAACGATGAAATTTTTTTTGGTCTCAGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAGGTTAGATTTATTGGTTTGTGTATAATTTAATTGTGTGTACTCAAGGGAGCTGAAAGAAGTTTTTGTAAAATAAGATGTATGTTGTAACTTAGACAATCACTTCGTCCGTGCTGATTCTCAGATTCATCTGTATTTTTAATTGACTTGTGAAAATGAAACATTTAAAATTGAACATCGATAACTTGCTTTTCTCATTGTAAGGGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAAGTGAACACTTATCTCTGCTCTTTTGGTTTCGTTAAAAGTACTCTCTCTCGTTTATAGCACACACAAACTGCATGTCAATATCCCTGATTGATTTTCCCATTTGGTATTCAACTAGAAGATGAAACATCTGACGCATTTAATATTTGATGAATCGATGCAGCTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGG-TTTTCGTATTTCT</genome_strand>
        <mrna_strand>TTCCCACTTTTGACACTCTG..................................................................................................................GTTAAATAGGCCTTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCCGATGGAGACTAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG............................................................................................................................AAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG...........................................................................................................................................................................GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG.....................................................................................................................................................................................GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGGGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTT-CAGTCAAAATGTTGTATGGTTTTTCGTATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548921" ref_strand="+" ref_description="SGN-E548921 [TUS-65-K11]">
      <seq>atcaagttttagcaatatccttcagcatacagatttaacagtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcatcttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggcaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgggtaaatcctgttttgtccaagagagtaattatcacggctagtagccccatttcaagatgcactgatcccaaggtgttggtgtcaaggaacttccagggtacatctgttgctggacctcagatggaggggggaagaaacacttcgtggtggatggttgatattggtccggatcaccagctcatgtgtaactactacacattgagacaggatggatcaagagcatttatcagacgttggaaccttcagggctctttggatgggaaaagctggacaaatctgagagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="56867" stop="53787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56567" g_stop="56543" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="238" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="286" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="345" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55458" g_stop="55332" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="472" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55207" g_stop="55133" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54961" g_stop="54881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="628" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54451" g_stop="54383" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="697" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54201" g_stop="54087" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="812" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E548921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56567" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55332"/>
          <exon e_start="55207" e_stop="55133"/>
          <exon e_start="54961" e_stop="54881"/>
          <exon e_start="54451" e_stop="54383"/>
          <exon e_start="54201" e_stop="54087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAGGTAAATCCACAGCTGCAAAAAGCAATTAACCTTCCTCCTTTTGACTTGCTACCGTTCTAAAAAATATACTATTGTTTACCATCTCATTCTGTCATCTGTTTAACATTGGTAATTCATGTTTCAGAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAGGTATGAATAGGATGACATTCAATTATTGTGAAGTATCTTCTCCTTTTAAATTAATTTGAGAAAAAAAGAAAGAAATATTCTTTTGCTCTCTCTTTTTCATTGATGGCGTTAAGGACACAAAAGAGTGTGTTAGCTCCATAATATGAACGATGAAATTTTTTTTGGTCTCAGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAGGTTAGATTTATTGGTTTGTGTATAATTTAATTGTGTGTACTCAAGGGAGCTGAAAGAAGTTTTTGTAAAATAAGATGTATGTTGTAACTTAGACAATCACTTCGTCCGTGCTGATTCTCAGATTCATCTGTATTTTTAATTGACTTGTGAAAATGAAACATTTAAAATTGAACATCGATAACTTGCTTTTCTCATTGTAAGGGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAAGTGAACACTTATCTCTGCTCTTTTGGTTTCGTTAAAAGTACTCTCTCTCGTTTATAGCACACACAAACTGCATGTCAATATCCCTGATTGATTTTCCCATTTGGTATTCAACTAGAAGATGAAACATCTGACGCATTTAATATTTGATGAATCGATGCAGCTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTC</genome_strand>
        <mrna_strand>ATCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG............................................................................................................................AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG...........................................................................................................................................................................GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG.....................................................................................................................................................................................GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704383" ref_strand="+" ref_description="SGN-E704383 [FA24AE11]">
      <seq>gagggagagtgtttcttcagtggtctgcttaaaagatgttcctcttgaggcattcaagattatgctagaattcatgtacagtggagaacttaataaagaagctactgcaggaatcaataccttgttacttcagctacttttactagccgatgagtttggggtgacacttcttcatcaggagtgctgcaaaatacttctggagtgcctctcagagggatggagttctcctattggaagaaggattcagtatgcccaattcttcaagtgatatcatcgattccctcatgtaagctcattgaagaaacctgtgagaggatattctccatgcacttcgattattgtacaactgcaagcattgactttgtcatgttagatgaatcaagttttagcaatatccttcagcatacagatttaacagtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcatcttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggcaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgggtaaatcctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="57561" stop="55039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57261" g_stop="57048" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57047" i_stop="56838" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56837" g_stop="56812" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="240" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56811" i_stop="56705" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56704" g_stop="56543" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="402" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="615" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="663" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="722" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55458" g_stop="55339" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="842" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E704383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57261" e_stop="57048"/>
          <exon e_start="56837" e_stop="56812"/>
          <exon e_start="56704" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGAGTGTTTCTTCAGTGGTCTGCTTAAAAGATGTTCCTCTTGAGGCATTCAAGATTATGCTAGAATTCATGTACAGTGGAGAACTTAATAAAGAAGCTACTGCAGGAATCAATACCTTGTTACTTCAGCTACTTTTACTAGCCGATGAGTTTGGGGTGACACTTCTTCATCAGGAGTGCTGCAAAATACTTCTGGAGTGCCTCTCAGAGGTAATCTTGTGATTTTGACCTCTTTCTAGACATACTTCCTCTTTTGTTGCTAAACCTGTATCTGTCGTGTGCATGTTGAAAGTGCTAAATGTCAGACTACAATTAAAAGAGTGGAGAAGTGATGCGGTTCGGAGTTGTGAGCGTGAGCAGAGCCGTTTTATGAAAATGAGATATAAATATTAATACCTTTCATCTATACATTATATGCAGGGATGGAGTTCTCCTATTGGAAGAAGGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTT</genome_strand>
        <mrna_strand>GAGGGAGAGTGTTTCTTCAGTGGTCTGCTTAAAAGATGTTCCTCTTGAGGCATTCAAGATTATGCTAGAATTCATGTACAGTGGAGAACTTAATAAAGAAGCTACTGCAGGAATCAATACCTTGTTACTTCAGCTACTTTTACTAGCCGATGAGTTTGGGGTGACACTTCTTCATCAGGAGTGCTGCAAAATACTTCTGGAGTGCCTCTCAGAG..................................................................................................................................................................................................................GGATGGAGTTCTCCTATTGGAAGAAG...........................................................................................................GATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366373" ref_strand="-" ref_description="SGN-E366373 [cLPT-1-M3](-)">
      <seq>gatatcatcgattccctcatgtaagctcattgaagaaacctgtgagaggatattctccatgcacttcgattattgtacaactgcaagcattgactttgtcatgttagatgaatcaagttttagcaatatccttcagcatacagatttgactgtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcaacttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggaaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="56978" stop="55053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56678" g_stop="56543" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="349" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="397" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="456" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55458" g_stop="55353" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="562" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E366373" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366373" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56678" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGG</genome_strand>
        <mrna_strand>GATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTGACTGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCAACTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGAAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304361" ref_strand="+" ref_description="SGN-E304361 [cLEX-12-F20]">
      <seq>tcaagttttagcaatatccttcagcatacagatttaacagtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcatcttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggcaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgagggagatagcaacggggtcctttattttgctggcacatcatatgggaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="56866" stop="55059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56566" g_stop="56543" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="237" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="285" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="344" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55458" g_stop="55359" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="444" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E304361" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56566" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACAC</genome_strand>
        <mrna_strand>TCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGAGGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396187" ref_strand="+" ref_description="SGN-E396187 [TUS-24-J24]">
      <seq>ttggaagaaggttcaagaactttttctattatgccaagtttagtggacgaggaagaagacactttggtaaagtctttggatcgtgattgtgatactaactattgatctttattgcaggattcagtatgcccaattcttcaagtgatatcatcgattccctcatgtaagctcattgaagaaacctgtgagaggatattctccatgcacttcgattattgtacaactgcaagcattgactttgtcatgttagatgaatcaagttttagcaatatccttcagcatacagatttaacagtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcatcttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggcaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacgggggtcctttattttgctggcacatcatatggggaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="57121" stop="55060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56821" g_stop="56543" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="492" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="540" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="599" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55458" g_stop="55360" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="700" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E396187" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56821" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGAAGGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAAC-GGGGTCCTTTATTTTGCTGGCACATCATAT-GGGAAACA</genome_strand>
        <mrna_strand>TTGGAAGAAGGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGGTCCTTTATTTTGCTGGCACATCATATGGGGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246554" ref_strand="+" ref_description="SGN-E246554 [cLEF-45-B11]">
      <seq>tggaagaacgttcaagaactttttctattatgccaagtttagtggacgaggaagaagacactttggtaaagtctttggatcgtgattgtgatactaactattgatctttattgcaggattcagtatgcccaattcttcaagtgatatcatcgattccctcatgtaagctcattgaagaaacctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="57120" stop="56335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56820" g_stop="56635" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E246554" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56820" e_stop="56635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGAAGGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTG</genome_strand>
        <mrna_strand>TGGAAGAACGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315128" ref_strand="+" ref_description="SGN-E315128 [cTOA-24-C14]">
      <seq>ttgttcacctgccagacataagttattctgttcttcatgcacttcttcagtacatctacactggacatactcaggtgagtcccatctttcaggcaatttcaaattattatgcttccactaattgtctgcttaactttggataacatgcctattgctttttcattgttgagtttcaggaactaagaacagaaaaaatagttctttttactattcagagaaggaattaaatcaaaattttaaaatttgctctatgtgagttttgtgtataaaccaaattttctttatttttgtatttcttcctattgtctaatttttctaaagactactgactccagccaaatcttaaatcaaacgtaccaagcgtgacattatgcgtatagatataaatttgcaaggtattgttctatgcgacttttagtttacttgaatatttatctcatagctgctgattcactgctacatttgaacattgtagattttggagtctgatctctgctcattgaagtctttgagcttacaatataaagtgatgtcattggtgaggcaatgtgaagagatccttgagcgaattatgtctgataagcaactcgttgactcaactcagcttgttgacatattttatccaagctggcttcaatgcagcaaaacttttccttatgggttgccaattaatagagaaaggcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="59024" stop="57737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58724" g_stop="58037" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E315128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58724" e_stop="58037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCACCTGCCAGACATAAGTTATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTATCTCATAGCTGCTGATTCACTGCTACATTTGAACATTGTAGATTTTGGAGTCTGATCTCTGCTCATTGAAGTCTTTGAGCTTACAATATAAAGTGATGTCATTGGTGAGGCAATGTGAAGAGATCCTTGAGCGAATTATGTCTGATAAGCAACTCGTTGACTCAACTCAGCTTGTTGACATATTTTATCCAAGCTGGCTTCAATGCAGCAAAACTTTTCCTTATGGGTTGCCAATTAATAGAGAAAGGCTTGAA</genome_strand>
        <mrna_strand>TTGTTCACCTGCCAGACATAAGTTATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTATCTCATAGCTGCTGATTCACTGCTACATTTGAACATTGTAGATTTTGGAGTCTGATCTCTGCTCATTGAAGTCTTTGAGCTTACAATATAAAGTGATGTCATTGGTGAGGCAATGTGAAGAGATCCTTGAGCGAATTATGTCTGATAAGCAACTCGTTGACTCAACTCAGCTTGTTGACATATTTTATCCAAGCTGGCTTCAATGCAGCAAAACTTTTCCTTATGGGTTGCCAATTAATAGAGAAAGGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315136" ref_strand="+" ref_description="SGN-E315136 [cTOA-24-G14]">
      <seq>attctgttcttcatgcacttcttcagtacatctacactggacatactcaagtgagtcccatctttcacgcaatttcaaattattatgcttccactaattgtctgcttaactttggataacatgcctattgctttttcattgttgagtttcaggaactaagaacagaaaaaatagttctttttactattcagagaaggaattaaatcaaaattttaaaatttgctctatgtgagttttgtgtataaaccaaattttctttatttttgtatttcttcctattgtctaatttttctaaagactactgactccagccaaatcttaaatcaaacgtaccaagcgtgacattatgcgtatagatataaatttgcaaggtattgttctatgcaacttttagtttacttgaatatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="59000" stop="57990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58700" g_stop="58290" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E315136" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58700" e_stop="58290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTAT</genome_strand>
        <mrna_strand>ATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAAGTGAGTCCCATCTTTCACGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCAACTTTTAGTTTACTTGAATATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393058" ref_strand="+" ref_description="SGN-E393058 [TUS-37-F12](-)">
      <seq>aactgcttccttgcagtaatattatacgtgttcagtttttttaatgcaattgttgatgaacaacataagttcccccaggttttggggggaaggggggagggtgtttgagttcttttgttaccgagaaaactttgtttatgttttttcatgtcatgtaccttgttggaatgtgaaatcttgcttttcatacttttacttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="61692" stop="60882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61392" g_stop="61181" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E393058" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61392" e_stop="61181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATAAGTTGCCCCAGGCTCTGGGGGGAAGGGGGGAGGGTGTTTGAGTTCTTTTGTTACCGAGAAAACTTTGTTTATGTTTTTTCATGTCATGTACATTGTTGGAATGTGAAATCTTGCTTTTCATACTTTTACTTGAATATATATATAT</genome_strand>
        <mrna_strand>AACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAACAACATAAGTTCCCCCAGGTTTTGGGGGGAAGGGGGGAGGGTGTTTGAGTTCTTTTGTTACCGAGAAAACTTTGTTTATGTTTTTTCATGTCATGTACCTTGTTGGAATGTGAAATCTTGCTTTTCATACTTTTACTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260222" ref_strand="-" ref_description="SGN-E260222 [cLEG-53-O5]">
      <seq>agtggagtatgaaatgcttcgattcccaccatcaatgcttgcagctgctgctatctttactgcacaatgcactctcggtgtgtctaaggagtggaataaaacctgtgagaagcatagcagctatgtcaaagatcaacttttggaatgctcgaaattgatggtttctttccatcagaaggcagcaattgggaagcttagtggcgtgcaccgaaagtacagaacttctaaatatggctacgctattagatgtgaaccagcttcttttctattagaagcatggttttaggattgtctaggaggaacatatgatgaaaccgcatgcttgcagtagtatatgtgttcagtttttttaatgcaattgttggtgagaaacataagtgtgccccaagctctgggggaaggggagggtgtttgagttcttttgctactgagaaaacttcgtttatggtttttcatgtcatgaacattgatgttgttgacattattggaatgtgaaatcttgcttttcataaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="62093" stop="60904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61793" g_stop="61653" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61566" g_stop="61224" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="476" r_length="335" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="528"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E260222" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61793" e_stop="61653"/>
          <exon e_start="61566" e_stop="61224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTTGTAAGTATACTCAGGATTAACAAGTATCTATTCATTGACAAATCAGAGAGATGTTTGATTGTGTGTCCCTTGATTTTCTACAACAGGGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATAAGT-TGCCCCAGGCTCTGGGGGGAAGGGGGGAGGGTGTTTGAGTTCTTTTGTTACCGAGAAAACTTTGTTTATGTTTTTTCATGTCATGTACATTGTTGGAAT</genome_strand>
        <mrna_strand>AGTGGAGTATGAAATGCTTCGATTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT......................................................................................GGAATGCTCGAAATTGATGGTTTCTTTCCATCAGAAGGCAGCAATTGGGAAGCTTAGTGGCGTGCACCGAAAGTACAGAACTTCTAAATATGGCTACGCTATTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTGTCT---AGGAGGAACATATGATGAAACCGCATGCTTGCAGTAGTA-TAT--GTGTTCAGTTTTTTTAATGCAATTGTTGGTGAGAAACATAAGTGTGCCCCAAGCTCT-GGGGGAA--GGGGAGGGTGTTTGAGTTCTTTTGCTACTGAGAAAACTTCGTTTATGGTTTTTCATGTCATGAACATTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346716" ref_strand="+" ref_description="SGN-E346716 [cTOF-28-L13]">
      <seq>tctgataagaaggtggagctagtgtcattcttcttgatagagctatgtctagtggagtatgaaatgcttcggttcccaccatcaatgcttgcagctgctgctatctttactgcacaatgcactctcggtgtgtctaaggagtggaataaaacctgtgagaagcatagcagctatgtcaaagatcaacttttggaatgctcaaaattgatggtttgtttccatcagaaggcagcaattgggaaacttactggcgtgcaccgaaagtacagcacttctaaatatggctatgctactagatgtgaaccagcttcttttctattagaagcatggttttaggattcactaggaggaggaacacatgaggaaactgcttccttgcagtaatattatacgtgttcagtttttttaatgcaattgttgatgagcaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="62140" stop="61026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61943" g_stop="61932" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61931" i_stop="61832" i_length="100">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61831" g_stop="61653" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="191" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61566" g_stop="61326" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="432" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E346716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61943" e_stop="61932"/>
          <exon e_start="61831" e_stop="61653"/>
          <exon e_start="61566" e_stop="61326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATAAGAAGGTGTGTCAAACTTCTTTACTACATAGAACGAGTGTTACGAAGAAGTATAACAACATTCTGAATCACTACTCATACAACTTTTTGTTTCTGTTTAAATCAGGTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTTGTAAGTATACTCAGGATTAACAAGTATCTATTCATTGACAAATCAGAGAGATGTTTGATTGTGTGTCCCTTGATTTTCTACAACAGGGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATA</genome_strand>
        <mrna_strand>TCTGATAAGAAG....................................................................................................GTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT......................................................................................GGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393059" ref_strand="+" ref_description="SGN-E393059 [TUS-37-F12]">
      <seq>gtctgataagaaggtggagctagtgtcattcttcttgatagagctatgtctagtggagtatgaaatgcttcggttcccaccatcaatgcttgcagctgctgctatctttactgcacaatgcactctcggtgtgtctaaggagtggaataaaacctgtgagaagcatagcagctatgtcaaagatcaacttttggaatgctcaaaattgatggtttgtttccatcagaaggcagcaattgggaaacttactggcgtgcaccgaaagtacagcacttctaaatatggctatgctactagatgtgaaccagcttcttttctattagaagcatggttttaggattcactaggaggaggaacacatgaggaatctgcttccttgcaataatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="62142" stop="61068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61944" g_stop="61932" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61931" i_stop="61832" i_length="100">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61831" g_stop="61653" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="192" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61566" g_stop="61368" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="391" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E393059" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61944" e_stop="61932"/>
          <exon e_start="61831" e_stop="61653"/>
          <exon e_start="61566" e_stop="61368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGATAAGAAGGTGTGTCAAACTTCTTTACTACATAGAACGAGTGTTACGAAGAAGTATAACAACATTCTGAATCACTACTCATACAACTTTTTGTTTCTGTTTAAATCAGGTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTTGTAAGTATACTCAGGATTAACAAGTATCTATTCATTGACAAATCAGAGAGATGTTTGATTGTGTGTCCCTTGATTTTCTACAACAGGGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTAT</genome_strand>
        <mrna_strand>GTCTGATAAGAAG....................................................................................................GTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT......................................................................................GGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAATCTGCTTCCTTGCAATAATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306332" ref_strand="+" ref_description="SGN-E306332 [cLEX-13-M4]">
      <seq>atatcccatgtttacgattcaattttatacacccatttcccaaatcctctctttttaatgaaccctaacaagattaatcagtagaggaacatttttatttttgaaaatctttgattagtttcatggggttcttcaattactagtctttaatcgatttctgggatttttttgggttgtttcacctcaaagatcggatctttttcatctagtgtggatcaagttctcagtgaagatggctggatcagatgagaattacccaggagtgattaggccttcaaatcttcaagggggattgaggcctggtgttggaggaaaagtgaatggagggttggggcaaaataggagggcactaagcacaatcaataagaatgtgatgggagctcccccattacactgtgctgttgtccacaagagaaatgacattactgaaaacaaagccagtgctgctaacaagatccctcctgttccgattcatcgtccaatcacaaggaagttagctgcgcaaatcgcaagcaaacagcatcaaccagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="64608" stop="63008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64308" g_stop="64082" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64081" i_stop="63941" i_length="141">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63940" g_stop="63881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="287" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63880" i_stop="63782" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63781" g_stop="63640" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="429" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63639" i_stop="63543" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63542" g_stop="63483" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="489" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63482" i_stop="63353" i_length="130">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63352" g_stop="63308" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="534" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E306332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64308" e_stop="64082"/>
          <exon e_start="63940" e_stop="63881"/>
          <exon e_start="63781" e_stop="63640"/>
          <exon e_start="63542" e_stop="63483"/>
          <exon e_start="63352" e_stop="63308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCCATGTTTACGATTCAATTTTATACACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAGGTTGGTATTTGGGGTTTCATGAAATGAAGTTTTTGATATGTGTAGCTTAATTCTTTATGATTTTTCTTGGTTTAGATTGATGGGTCATTCAAATTTTCAATTGGGTTTTTGATTTTGTTTTTGGTTTGTGGGTTGGTGCAGTGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAGGTGAGCTTAGTCTTTTTTTTGTGTGTTCTTGAATTAGTGTTTGTTTTGATTCTTTTGTGTTTGTTGATTTGACTGTGATAAACCCTAATTGTTATATAGGGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCTGCTAACAAGATCCCTCCTGTTCCGATTCATCGTCCAATCACAAGGTTTGACTCTATTTCTCTTTGATTGTATGATACTAAGAAGGCGTTTGTCCATATGAAGCAGGATCCTAGAAATTGTTACACCTGATCTCGATTCACTGTTAATTTGCATGTGGCGTTGTTTACATTTCAGGAAGTTAGCTGCGCAAATCGCAAGCAAACAGCATCAACCAGCAGT</genome_strand>
        <mrna_strand>ATATCCCATGTTTACGATTCAATTTTATACACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAG.............................................................................................................................................TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAG...................................................................................................GGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGA.................................................................................................AAACAAAGCCAGTGCTGCTAACAAGATCCCTCCTGTTCCGATTCATCGTCCAATCACAAG..................................................................................................................................GAAGTTAGCTGCGCAAATCGCAAGCAAACAGCATCAACCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302192" ref_strand="+" ref_description="SGN-E302192 [cLEW-19-E17]">
      <seq>aaatcctttttttttaatgaaccctaacaagattaatcagtagaggaacatttttatttttgaaaatctttgattagtttcatggggttcttcaattactagtctttaatcgatttctgggatttttttgggttgtttcacctcaaagatcggatctttttcatctagtgtggatcaagttctcagtgaagatggctggatcagatgagaattacccaggagtgattaggccttcaaatcttcaagggggattgaggcctggtgttggaggaaaagtgaatggagggttggggcaaaataggagggcactaagcacaatcaataagaatgtgatgggagctcccccattacactgtgctgttgtccacaagagaaatgacattactgagtaaaaacttcttaaaccagagtactcgattccatttctagttttaatcttgatttctctacctgtttttcaactttttgttttaatttctttctagaaacaaagccagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="64567" stop="63227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64267" g_stop="64082" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64081" i_stop="63941" i_length="141">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63940" g_stop="63881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="246" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63880" i_stop="63782" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63781" g_stop="63527" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="501" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-E302192" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64267" e_stop="64082"/>
          <exon e_start="63940" e_stop="63881"/>
          <exon e_start="63781" e_stop="63527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAGGTTGGTATTTGGGGTTTCATGAAATGAAGTTTTTGATATGTGTAGCTTAATTCTTTATGATTTTTCTTGGTTTAGATTGATGGGTCATTCAAATTTTCAATTGGGTTTTTGATTTTGTTTTTGGTTTGTGGGTTGGTGCAGTGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAGGTGAGCTTAGTCTTTTTTTTGTGTGTTCTTGAATTAGTGTTTGTTTTGATTCTTTTGTGTTTGTTGATTTGACTGTGATAAACCCTAATTGTTATATAGGGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCT</genome_strand>
        <mrna_strand>AAATCCTTTTTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAG.............................................................................................................................................TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAG...................................................................................................GGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329626" ref_strand="+" ref_description="SGN-E329626 [cTOD-3-C18]">
      <seq>tttgaacaagggtttaaaatggatgaagaaaatgatcaatcaaatcgtattacaactcctattgataataaggatttggtatacgaacttatgggtataattcatattataagttcttacgcagaatttaggaggactcaaagaaaggaaagtcgtaatcttgtacgtaggatgaaacttttattaccccttttagaagaaattcgagatttccaaggaaaaatacctgaatcaggtgttcattgtttggtgaaaatgaagaaggcatttcattctgctaaaaagttgttaaaaacttgtcattgtggtagcaaactttatctggctttggaaagtgaggctgttataaggagatttcattctgtatatgaaaaattaagccaaactttggatggaatgccttatgaagaacttggtatttcagatgaagagaaagaacaggtggagttgatgatcattcaatttaaaaggtctaagaaacgaattgatactcaagatatggaactcgcgatggatttgatggtttcattgtcctcggagaatgatcgaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="65916" stop="67366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66216" g_stop="66539" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66540" i_stop="66765" i_length="226">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66766" g_stop="66882" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="441" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66883" i_stop="66953" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66954" g_stop="67066" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="554" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E329626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66216" e_stop="66539"/>
          <exon e_start="66766" e_stop="66882"/>
          <exon e_start="66954" e_stop="67066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAGGGTTTAAAATGGATGAAGAAAATGATCAATCAAATCGTATTACAACTCCTATTGATAATAAGGATTTGGTATACGAACTTATGGGTATAATTCATATTATAAGTTCTTACGCAGAATTTAGGAGGACTCAAAGAAAGGAAAGTCGTAATCTTGTACGTAGGATGAAACTTTTATTACCCCTTTTAGAAGAAATTCGAGATTTCCAAGGAAAAATACCTGAATCAGGTGTTCATTGTTTGGTGAAAATGAAGAAGGCATTTCATTCTGCTAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTGGTAACTAATTCTATCCTTAATTCTGTTAATATCATCAATTATATTAATAAGTGTGACCGTCCTATCTAAAATCATACTTTAGTCATTACTAATTTATATTATGTCACCTGATTCTGTTTCTCGAGGTTTTGGCATGTGTGTTCACCTCGTTTAGAAGCTTAAGCTAGTCTAGAAATGACGATATTATATGTTTCTGGGATTGATTTTCTTGGTTTTTCGTATGTAGGCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAGGTACGAAGAAAAATGTTTTCCTAGAAAATAAGTGGTTTTCTTACTTATATTGACGATATGATACTTTTCAGGTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCTCGGAGAATGATCGAAATGC</genome_strand>
        <mrna_strand>TTTGAACAAGGGTTTAAAATGGATGAAGAAAATGATCAATCAAATCGTATTACAACTCCTATTGATAATAAGGATTTGGTATACGAACTTATGGGTATAATTCATATTATAAGTTCTTACGCAGAATTTAGGAGGACTCAAAGAAAGGAAAGTCGTAATCTTGTACGTAGGATGAAACTTTTATTACCCCTTTTAGAAGAAATTCGAGATTTCCAAGGAAAAATACCTGAATCAGGTGTTCATTGTTTGGTGAAAATGAAGAAGGCATTTCATTCTGCTAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTG..................................................................................................................................................................................................................................GCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAG.......................................................................GTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCTCGGAGAATGATCGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363941" ref_strand="+" ref_description="SGN-E363941 [cLPP-16-G17]">
      <seq>taaaaagttgggaaaaacttgtcatggtggtagcaaactttatctggctttggaaagtgaggctgttataaggagatttcattctgtatatgaaaaattaagccaaactttggatggaatgccttatgaagaacttggtatttcagatgaagagaaagaacaggtggagttgatgatcattcaatttaaaaggtctaagaaacgaattgatactcaagatatggaactcgcgatggatttgatggtttcattgtccacggagaatgatcgaaatgcagatagtgctagtatagaaaggctagcgaaaaaactggaattgcatacagttgaggatttaaaagctgaaatgatatcagttaatgaagttataaaagaaagacgatcacataatgctgagaacacacaacgaatcgttgatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="66194" stop="67512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66494" g_stop="66539" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66540" i_stop="66765" i_length="226">
            <donor d_prob="0.839" d_score="0.93"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66766" g_stop="66882" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="163" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66883" i_stop="66953" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66954" g_stop="67212" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="422" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E363941" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66494" e_stop="66539"/>
          <exon e_start="66766" e_stop="66882"/>
          <exon e_start="66954" e_stop="67212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTGGTAACTAATTCTATCCTTAATTCTGTTAATATCATCAATTATATTAATAAGTGTGACCGTCCTATCTAAAATCATACTTTAGTCATTACTAATTTATATTATGTCACCTGATTCTGTTTCTCGAGGTTTTGGCATGTGTGTTCACCTCGTTTAGAAGCTTAAGCTAGTCTAGAAATGACGATATTATATGTTTCTGGGATTGATTTTCTTGGTTTTTCGTATGTAGGCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAGGTACGAAGAAAAATGTTTTCCTAGAAAATAAGTGGTTTTCTTACTTATATTGACGATATGATACTTTTCAGGTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCTCGGAGAATGATCGAAATGCAGATAGTGCTAGTATAGAAAGGCTAGCGAAAAAACTGGAATTGCATACAGTTGAGGATTTAAAAGCTGAAATGATATCAGTTAATGAAGTTATAAAAGAAAGACGATCACATAATGCTGAGAACACACAACGAATCGTTGATCTTC</genome_strand>
        <mrna_strand>TAAAAAGTTGGGAAAAACTTGTCATGGTGGTAGCAAACTTTATCTG..................................................................................................................................................................................................................................GCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAG.......................................................................GTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCACGGAGAATGATCGAAATGCAGATAGTGCTAGTATAGAAAGGCTAGCGAAAAAACTGGAATTGCATACAGTTGAGGATTTAAAAGCTGAAATGATATCAGTTAATGAAGTTATAAAAGAAAGACGATCACATAATGCTGAGAACACACAACGAATCGTTGATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547809" ref_strand="+" ref_description="SGN-E547809 [TUS-71-O3]">
      <seq>gaaaatccagagaaacgaacattgatagctaattatggaggaattccaccactggtgttgctactttcctatccggattcaaaaatccaggaacatgctgtgacagctcttttaaacttgtcaatcgatgaatcaaacaagaaacttatatccagagaaaacgcgattcctgaaataatagagattttgcaaaatggaagtgttggagctaaagagaactctgcagcagcattatttagcttatcaatgcttgatgaaaacaaagtagctataggttcgttaaatggcatccctccgttgattgatctgttaaaaaacggaacgatcagagggaggaaggatgccattactgcacttttcaatctatgtttcaaccatgctaacaaaagtatcgcgatccaagctgggattgtagcaccattacttcaactactagaggaaaaacacttagacatggttgatgagacattgtcaatattgttgattctcgcgactcatccagaaggcagacaggtaattggaaagctttccttcatcgaaacacttgtaaatttgatgaaggatggcactcccaagaacaaggaatgttctgttgctgtgcttttcgagttgagtacctataattcaaatcttatgcttgctgctcttcaatacggcgtgtatgaatatctagtagagataagtaaggagggaactgatcgcggccaaaggaaagcaaaatcaatactacaacttatgaccaaaactgagcagatcccatattgacaatgcaaagtccaaatgtacatctgcttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67448" stop="68844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67748" g_stop="68544" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E547809" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67748" e_stop="68544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACAATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTACAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGATAATGCAAAGTCCAAATGTACATCTGCTTAGC</genome_strand>
        <mrna_strand>GAAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACGATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTATAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGACAATGCAAAGTCCAAATGTACATCTGCTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547816" ref_strand="+" ref_description="SGN-E547816 [TUS-71-O7]">
      <seq>gaaatccagagaaacgaacattgatagctaattatggaggaattccaccactggtgttgctactttcctatccggattcaaaaatccaggaacatgctgtgacagctcttttaaacttgtcaatcgatgaatcaaacaagaaacttatatccagagaaaacgcgattcctgaaataatagagattttgcaaaatggaagtgttggagctaaagagaactctgcagcagcattatttagcttatcaatgcttgatgaaaacaaagtagctataggttcgttaaatggcatccctccgttgattgatctgttaaaaaacggaacgatcagagggaggaaggatgccattactgcacttttcaatctatgtttcaaccatgctaacaaaagtatcgcgatccaagctgggattgtagcaccattacttcaactactagaggaaaaacacttagacatggttgatgagacattgtcaatattgttgattctcgcgactcatccagaaggcagacaggtaattggaaagctttccttcatcgaaacacttgtaaatttgatgaaggatggcactcccaagaacaaggaatggtctgttgctgtgcttttcgagttgagtacctataattcaaatcttatgcttgctgctcttcaatacggcgtgtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67450" stop="68712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67749" g_stop="68412" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E547816" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67749" e_stop="68412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACAATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTACAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGA</genome_strand>
        <mrna_strand>GAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACGATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGGTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTATAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363219" ref_strand="+" ref_description="SGN-E363219 [cLPP-19-O22]">
      <seq>aaaatccagagaaacgaacattgatagctaattatggaggaattccaccactggtgttgctactttcctatccggattcaaaaatccaggaacatgctgtgacagctcttttaaacttgtcaatcgatgaatcaaacaagaaacttatatccagagaaaacgcgattcctgaaataatagagattttgcaaaatggaagtgttggagctaaagagaactctgcagcagcattatttagcttatcaatgcttgatgaaaacaaagtagctataggttcgttaaatggcatccctccgttgattgatctgttaaaaaacggaacgatcagagggaggaaggatgccattactgcacttttcaatctatgtttcaaccatgctaacaaaagtatcgcgatccaagctgggattgtagcaccattacttcaactactagaggaaaaacacttagacatggttgatgagacattgtcaatattgttgattctcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67449" stop="68539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67749" g_stop="68239" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E363219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67749" e_stop="68239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACAATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCG</genome_strand>
        <mrna_strand>AAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACGATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547823" ref_strand="+" ref_description="SGN-E547823 [TUS-71-O11]">
      <seq>agcgaacattgatagctaatcatggaggaattccaccactggtgttgctactttcctatccggattcaaaaatccaggaacatgctgtgacagctcttttaaacttggcaatcgatgaatcatactacaaacttatatccagagaaaacgcgattcctgaaataatagagattttgcaaaatggaagtgttggagctaaagagaactctgcagcaggcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67463" stop="68282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67761" g_stop="67975" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E547823" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67761" e_stop="67975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCA</genome_strand>
        <mrna_strand>AGCGAACATTGATAGCTAATCATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGGCAATCGATGAATCATACTACAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363137" ref_strand="+" ref_description="SGN-E363137 [cLPP-19-O10]">
      <seq>gagaaaacgcgattcctgaaataatagagattttgcaaaatggaagtgttggagctaaagagaactctgcagcagcattatttagcttatcaatgcttgatgaaaacaaagtagctataggttcgttaaatggcatccctccgttgattgatctgttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67602" stop="68364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67902" g_stop="68064" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E363137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67902" e_stop="68064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAA</genome_strand>
        <mrna_strand>GAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547808" ref_strand="+" ref_description="SGN-E547808 [TUS-71-O3](-)">
      <seq>aatttgatgaaggatggcactcccaagaacaaggaatgttctgttgctgtgcttttcgagttgagtacctataattcaaatcttatgcttgctgctcttcaatacggcgtgtatgaatatctagtagagataagtaaggagggaactgatcgcggccaaaggaaagcaaaatcaatactacaacttatgaccaaaactgagcagatcccatattgacaatgcaaagtccaaatgtacatctgcttagcatttggctcgtcctgtcgtccatgtaggtcaacttggatctatgtccaaattaacgaatatatatttgttacatgttatataatgtaagaaaaagaaacaaaacacgagtgctaaatagaactcgttgaagggttgtctctttagaaaaggtaaaagaagtcctaacggaaactctgtgaagaactttctgcaatgattcaaggcaaagttagaagaatttttacaggaatatttctccttgtaatccaggtatgatcatagactatgttactcggacttttcaaaaatgttgacaagtgcatgtcagatactccaaaaaaatagtgcattttggagaatctaacacagatgcaacaataagtttgaagagtcaaatcatagattgtgaacttgcattacaatctagtgttgattagatggatgtgattgtttttatgtgactaatgaaaacaaatcaatggagaagaatcagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67997" stop="69326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68297" g_stop="69025" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="755"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E547808" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68297" e_stop="69025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTACAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGATAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGGTTGTGTCTCTTCAGAAAAGGTAAAAGAAGTCCTAACGGAAACTGTATGAAGAACTTTCTCCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCAGACTTTTCAAAATTGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACATAAATGCAACAATAAATTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATTAATGGAGAAGAATCATGGGAAA</genome_strand>
        <mrna_strand>AATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTATAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGACAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGG-T-TGTCTCTTTAGAAAAGGTAAAAGAAGTCCTAACGGAAACTCTGTGAAGAACTTTCTGCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCGGACTTTTCAAAAATGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACACAGATGCAACAATAAGTTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATCAATGGAGAAGAATCA-GGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547815" ref_strand="+" ref_description="SGN-E547815 [TUS-71-O7](-)">
      <seq>aaactgagcagatcccatattgacaatgcaaagtccaaatgtacatctgcttagcatttggctcgtcctgtcgtccatgtaggtcaacttggatctatgtccaaattaacgaatatatatttgttacatgttatataatgtaagaaaaagaaacaaaacacgagtgctaaatagaactcgttgaagggttgtctctttagaaaaggtaaaagaagtcctaacggaaactctgtgaagaactttctgcaatgattcaaggcaaagttagaagaatttttacaggaatatttctccttgtaatccaggtatgatcatagactatgttactcggacttttcaaaaatgttgacaagtgcatgtcagatactccaaaaaaatagtgcattttggagaatctaacacagatgcaacaataagtttgaagagtcaaatcatagattgtgaacttgcattacaatctagtgttgattagatggatgtgattgtttttatgtgactaatgaaaacaaatcaatggagaagaatcatggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="68190" stop="69326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68490" g_stop="69029" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E547815" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68490" e_stop="69029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGAGCAGATCCCATATTGATAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGGTTGTGTCTCTTCAGAAAAGGTAAAAGAAGTCCTAACGGAAACTGTATGAAGAACTTTCTCCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCAGACTTTTCAAAATTGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACATAAATGCAACAATAAATTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATTAATGGAGAAGAATCATGGGAAAATGT</genome_strand>
        <mrna_strand>AAACTGAGCAGATCCCATATTGACAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGG-T-TGTCTCTTTAGAAAAGGTAAAAGAAGTCCTAACGGAAACTCTGTGAAGAACTTTCTGCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCGGACTTTTCAAAAATGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACACAGATGCAACAATAAGTTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATCAATGGAGAAGAATCATGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203661" ref_strand="+" ref_description="SGN-E203661 [cLEC-15-A8]">
      <seq>tcttttgaaacccctctcactggcgccgtctgttccatctttgctcacagtttttgatttacacctttttacagcttcattttgatagttttctgcctccgaagggtgttgagaataatctcaaaatggtcaactctgaaccccttcataatggtgtgaccactggtggaactggtatgccagcgtttgataagcaacttcctggtgtatcaagaaagacagctttgagagatgtgcagaatcaaaaaaccagcttgatgagtagccatcaagaaaattcacattttttaggcgtaagacctattgcagatccaactaaggtatgtggaactaagaggcttacacctgagcgtccttcaaataccaattctagcaaatctttgagcagcaatgatacaaatgacaatatacttaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="72330" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72630" g_stop="72702" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72703" i_stop="74438" i_length="1736">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74439" g_stop="74784" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="419" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E203661" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72630" e_stop="72702"/>
          <exon e_start="74439" e_stop="74784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGAAACCCCTCTCACTGGCGCCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACAGTAAGTATTATTTCAGCAATTTCACTTTTTTCGAACGATATATCAACCAAAATGTTTCGATCTTTGTTGTCATAATTTTTTTTTTAAAATTTGATTATTTTTTAATGTAAATTGTATGAAGAATACTGAAAGAAGTGTTTTTTAATTTGTCATTCATGGTTATTGGTGAAAAATGAAGATTTTTTGAGGTGGGTATTGGTTCTAAACGAAGATTTAGTGGATTAGCTTTGTTGGGGTTGTTTATGAGTATTGGAAATTGAAGTAGATTCTTCTGGGGTAGCTAGGGGTACAAAGCATCCCGCGTTAGCAAGGTCGGGGAAGTAGATTCTGTATAGCAGAATTCATGGGTTTAATTTTGGTAGTGGGTATGTGCTTTGGGTTTTCCCCTTTTGGAGTATTAAGTAAAAAAGAATTGGTCTTAAGCTGCTTTTTAATTTTTGAAATTTTGTTATTCACCTTATCGAAATGGTTTGTGGGTATTTGGCATGTTCGTTTGTTGAGAAATGTTTTTTTATCTATTTGATGCTAATTTTTTGTAGATAGAAAATGTATGTTCATTTTTTACCTTAGATGTAAAAATTATGGTTTTGAATTTGTGTTAAAGGAGTATTTTTGATACAGATCTGTATTTGCTTAGCTATGCATTTATTGTATGAGTTAGCTCTAATGAATACTTTTTGGCTTTAGCTTTATAATAATTTTATGTACTTCTTTTACTCATGGAATGGTTTTCAATCATTGTTCTTGTAATAGTATGATGCTAAGGGTGTGTTTGGGATGAAGAAAAATGTTGTGTTTTTTTTTGGAAAAGAAAGTGGCTTTTTAATCTTATTTTCTAGTAAGTAAGCAAAAAATATTATCCCAAGAGCATTTATATGTAATGTAGCTAAACATCTGGAGTAGGATAGGGTGTTGGAGGTGGGATGATCAAGGGATGAGGCTGGGACCGTTGGTGAGTGGAAATGAACTTAGAATGTCACTTATGTAACTTGTTTACTACTAATAGGGAAGTCATTTTCCTCATTCTTTAAGGAACTTGTTTTCCTAGAGAAAATGTTACCAATCATGGGAAAATTGAAAACATTTGATAACTGTTTTTCTTTTAATATAAAGTACTAGATGATAACTTCTTACAAATAAAAGGTGGGGTATATTGGCTTCTTTATCTTCTTACCAAGACATTCATCAGTGGGTCTTTCTCCTTGGTACTGGTTCTGTCTCTTTTGTCCTCTTACACAGCGAGCTGATGAAATCTACTATGGAGTGACTGATTTATATCTTGTACTACTTCACTTTTGGACCATACACACAAAAAAGTATAAGCAATTATATTTCAGCTGATGCACTGATTTTTTCTCTTTCAGAACATTTCTTGTTATCTCATTCGGTAGCTCCCAAAATATAGTTAAAGGAATTGAGTTCTGTATCTTTCTGGTAGTTTTTGGTGTCTTCTTGTCCCTCCATTTGTAAAACATTTGTATAATATCTCCTGGAGATACCATTTAATGTAGGCTTGTTTTTCTTAAGAATAAAGTCCACTTCCCAGGTTGCCTTGCAGTGTATAAATTATGATTTACTTACTCTTAAATCTTTCTCACATAGGTTAAATCTGCTAGCGACACCTCTTTCCCAAATCTGTTTTTTTTGTTCTGTCTTTCCACCATCTTCTTCTTCAAGTCTTTTTAACACTAAGGTAGTGGAGTATGATATATTTTTCATCTTTGTTTTCTGATCAGGCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCT</genome_strand>
        <mrna_strand>TCTTTTGAAACCCCTCTCACTGGCGCCGTCTGTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAAGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698496" ref_strand="+" ref_description="SGN-E698496 [FA06CB09]">
      <seq>ccgctcttccatctttgctcacagtttttgatttacacctttttacattttctgcctccgaagggtgttgagaataatctcaaaatggtcaactctgaaccccttcataatggtgtgaccactggtggaactggtatgccagcgtttgataagcaacttcctggtgtatcaagaaagacagctttgagagatgtgcagaatcaaaaaaccagcttgatgagtagccatcaagaaaattcacattttttaggcgtaagacctattgcagatccaactagggtatgtggaactaagaggcttacacctgagcgtccttcaaataccaattctagcaaatctttgagcagcaatgatacaaatgacaatatacttaatgctcgacgaagatttgatctagaactgggtaaaggaagacttcagagcaatgtggacaaatttgtggaggctactcactcaaagaacctgagtcagttgcagaggacaattcctcaaaagcaaaatctacagagggaaggtagtaatggtcatcctcctgtagcatcaccaaagcatttggcacctatgatgacattttctcatggtggaccatcaattcctaattctattggcaaggctgctaacaactctcgtgctcttccaattgattcttctaagctttctccccagccaatgcgtactttggatgtcaaggcggaagaagatcagaaattgacagaacatttcattcgtctgcagaagttcctgaaacagtgtgatgaaccaaaccaaacagaataccttcagctgcttctacgtttgtcaccaccctgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="72355" stop="75715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72655" g_stop="72702" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72703" i_stop="74453" i_length="1751">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74454" g_stop="75190" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="784" r_length="737" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75387" g_stop="75415" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="814" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E698496" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72655" e_stop="72702"/>
          <exon e_start="74454" e_stop="75190"/>
          <exon e_start="75387" e_stop="75415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACAGTAAGTATTATTTCAGCAATTTCACTTTTTTCGAACGATATATCAACCAAAATGTTTCGATCTTTGTTGTCATAATTTTTTTTTTAAAATTTGATTATTTTTTAATGTAAATTGTATGAAGAATACTGAAAGAAGTGTTTTTTAATTTGTCATTCATGGTTATTGGTGAAAAATGAAGATTTTTTGAGGTGGGTATTGGTTCTAAACGAAGATTTAGTGGATTAGCTTTGTTGGGGTTGTTTATGAGTATTGGAAATTGAAGTAGATTCTTCTGGGGTAGCTAGGGGTACAAAGCATCCCGCGTTAGCAAGGTCGGGGAAGTAGATTCTGTATAGCAGAATTCATGGGTTTAATTTTGGTAGTGGGTATGTGCTTTGGGTTTTCCCCTTTTGGAGTATTAAGTAAAAAAGAATTGGTCTTAAGCTGCTTTTTAATTTTTGAAATTTTGTTATTCACCTTATCGAAATGGTTTGTGGGTATTTGGCATGTTCGTTTGTTGAGAAATGTTTTTTTATCTATTTGATGCTAATTTTTTGTAGATAGAAAATGTATGTTCATTTTTTACCTTAGATGTAAAAATTATGGTTTTGAATTTGTGTTAAAGGAGTATTTTTGATACAGATCTGTATTTGCTTAGCTATGCATTTATTGTATGAGTTAGCTCTAATGAATACTTTTTGGCTTTAGCTTTATAATAATTTTATGTACTTCTTTTACTCATGGAATGGTTTTCAATCATTGTTCTTGTAATAGTATGATGCTAAGGGTGTGTTTGGGATGAAGAAAAATGTTGTGTTTTTTTTTGGAAAAGAAAGTGGCTTTTTAATCTTATTTTCTAGTAAGTAAGCAAAAAATATTATCCCAAGAGCATTTATATGTAATGTAGCTAAACATCTGGAGTAGGATAGGGTGTTGGAGGTGGGATGATCAAGGGATGAGGCTGGGACCGTTGGTGAGTGGAAATGAACTTAGAATGTCACTTATGTAACTTGTTTACTACTAATAGGGAAGTCATTTTCCTCATTCTTTAAGGAACTTGTTTTCCTAGAGAAAATGTTACCAATCATGGGAAAATTGAAAACATTTGATAACTGTTTTTCTTTTAATATAAAGTACTAGATGATAACTTCTTACAAATAAAAGGTGGGGTATATTGGCTTCTTTATCTTCTTACCAAGACATTCATCAGTGGGTCTTTCTCCTTGGTACTGGTTCTGTCTCTTTTGTCCTCTTACACAGCGAGCTGATGAAATCTACTATGGAGTGACTGATTTATATCTTGTACTACTTCACTTTTGGACCATACACACAAAAAAGTATAAGCAATTATATTTCAGCTGATGCACTGATTTTTTCTCTTTCAGAACATTTCTTGTTATCTCATTCGGTAGCTCCCAAAATATAGTTAAAGGAATTGAGTTCTGTATCTTTCTGGTAGTTTTTGGTGTCTTCTTGTCCCTCCATTTGTAAAACATTTGTATAATATCTCCTGGAGATACCATTTAATGTAGGCTTGTTTTTCTTAAGAATAAAGTCCACTTCCCAGGTTGCCTTGCAGTGTATAAATTATGATTTACTTACTCTTAAATCTTTCTCACATAGGTTAAATCTGCTAGCGACACCTCTTTCCCAAATCTGTTTTTTTTGTTCTGTCTTTCCACCATCTTCTTCTTCAAGTCTTTTTAACACTAAGGTAGTGGAGTATGATATATTTTTCATCTTTGTTTTCTGATCAGGCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGCGTGAGTCTTAGAGTCTTTCTACATAACTTATAAGCAGTTGACTAATTTCATTTTGACTCCTCGTTTATGTTGTTTGTATGATTTGTTTCTCTCAGTGCTTCTGCATTAGTCACCTCCTGAGCTTAGCAGACATGTTTTGTCTAGTTTCATTTTGACTCCTTGTTTATGCTGTTTGTATGATTTGTCTTTCTGTCAGTGCTTCTACGTTTGTCACCA-CCTGAGCTT</genome_strand>
        <mrna_strand>CCG-CTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAACCAAACCAAACAGAATACCTTCAGC....................................................................................................................................................................................................TGCTTCTACGTTTGTCACCACCCTGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324879" ref_strand="+" ref_description="SGN-E324879 [cTOC-11-N15]">
      <seq>tctcttccatctttgctcacagtttttgatttacacctgtttacagcttcattttgatagttttctgcctccgaagggtgttgagaataatctcaaaatggtcaactctgaaccccttcataatggtgtgaccactggtggaactggtatgccagcgtttgataagcaacttcctggtgtatcaagaaagacagctttgagagatgtgcagaatcaaaaaaccagcttgatgagtagccatcaagaaaattcacattttttaggcgtaagacctattgcagatccaactagggtatgtggaactaagaggcttacacctgagcgtccttcaaataccaattctagcaaatctttgagcagcaatgatacaaatgacaatatacttaatgctcgacgaagatttgatctagaactgggtaaaggaagacttcagagcaatgtggacaaatttgtggaggctactcactcaaagaacctgagtcagttgcagaggacaattcctcaaaagcaaaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="72358" stop="75211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72658" g_stop="72702" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72703" i_stop="74438" i_length="1736">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74439" g_stop="74911" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="518" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E324879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72658" e_stop="72702"/>
          <exon e_start="74439" e_stop="74911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACAGTAAGTATTATTTCAGCAATTTCACTTTTTTCGAACGATATATCAACCAAAATGTTTCGATCTTTGTTGTCATAATTTTTTTTTTAAAATTTGATTATTTTTTAATGTAAATTGTATGAAGAATACTGAAAGAAGTGTTTTTTAATTTGTCATTCATGGTTATTGGTGAAAAATGAAGATTTTTTGAGGTGGGTATTGGTTCTAAACGAAGATTTAGTGGATTAGCTTTGTTGGGGTTGTTTATGAGTATTGGAAATTGAAGTAGATTCTTCTGGGGTAGCTAGGGGTACAAAGCATCCCGCGTTAGCAAGGTCGGGGAAGTAGATTCTGTATAGCAGAATTCATGGGTTTAATTTTGGTAGTGGGTATGTGCTTTGGGTTTTCCCCTTTTGGAGTATTAAGTAAAAAAGAATTGGTCTTAAGCTGCTTTTTAATTTTTGAAATTTTGTTATTCACCTTATCGAAATGGTTTGTGGGTATTTGGCATGTTCGTTTGTTGAGAAATGTTTTTTTATCTATTTGATGCTAATTTTTTGTAGATAGAAAATGTATGTTCATTTTTTACCTTAGATGTAAAAATTATGGTTTTGAATTTGTGTTAAAGGAGTATTTTTGATACAGATCTGTATTTGCTTAGCTATGCATTTATTGTATGAGTTAGCTCTAATGAATACTTTTTGGCTTTAGCTTTATAATAATTTTATGTACTTCTTTTACTCATGGAATGGTTTTCAATCATTGTTCTTGTAATAGTATGATGCTAAGGGTGTGTTTGGGATGAAGAAAAATGTTGTGTTTTTTTTTGGAAAAGAAAGTGGCTTTTTAATCTTATTTTCTAGTAAGTAAGCAAAAAATATTATCCCAAGAGCATTTATATGTAATGTAGCTAAACATCTGGAGTAGGATAGGGTGTTGGAGGTGGGATGATCAAGGGATGAGGCTGGGACCGTTGGTGAGTGGAAATGAACTTAGAATGTCACTTATGTAACTTGTTTACTACTAATAGGGAAGTCATTTTCCTCATTCTTTAAGGAACTTGTTTTCCTAGAGAAAATGTTACCAATCATGGGAAAATTGAAAACATTTGATAACTGTTTTTCTTTTAATATAAAGTACTAGATGATAACTTCTTACAAATAAAAGGTGGGGTATATTGGCTTCTTTATCTTCTTACCAAGACATTCATCAGTGGGTCTTTCTCCTTGGTACTGGTTCTGTCTCTTTTGTCCTCTTACACAGCGAGCTGATGAAATCTACTATGGAGTGACTGATTTATATCTTGTACTACTTCACTTTTGGACCATACACACAAAAAAGTATAAGCAATTATATTTCAGCTGATGCACTGATTTTTTCTCTTTCAGAACATTTCTTGTTATCTCATTCGGTAGCTCCCAAAATATAGTTAAAGGAATTGAGTTCTGTATCTTTCTGGTAGTTTTTGGTGTCTTCTTGTCCCTCCATTTGTAAAACATTTGTATAATATCTCCTGGAGATACCATTTAATGTAGGCTTGTTTTTCTTAAGAATAAAGTCCACTTCCCAGGTTGCCTTGCAGTGTATAAATTATGATTTACTTACTCTTAAATCTTTCTCACATAGGTTAAATCTGCTAGCGACACCTCTTTCCCAAATCTGTTTTTTTTGTTCTGTCTTTCCACCATCTTCTTCTTCAAGTCTTTTTAACACTAAGGTAGTGGAGTATGATATATTTTTCATCTTTGTTTTCTGATCAGGCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTAC</genome_strand>
        <mrna_strand>TCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTGTTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344599" ref_strand="+" ref_description="SGN-E344599 [cTOF-14-C12]">
      <seq>agaaagacagctttgagagatgtgcagaatcaaaaaaccagcttgatgagtagccatcaagaaaattcacattttttaggcgtaagacctattgcagatccaactagggtatgtggaactaagaggcttacacctgagcgtccttcaaataccaattctagcaaatctttgagcagcaatgatacaaatgacaatatacttaatgctcgacgaagatttgatctagaactgggtaaaggaagacttcagagcaatgtggacaaatttgtggaggctactcactcaaagaacctgagtcagttgcagaggacaattcctcaaaagcaaaatctacagagggaaggtagtaatggtcatcctcctgtagcatcaccaaagcatttggcacctatgatgacattttctcatggtggaccatcaattcctaattctattggcaaggctgctaacaactctcgtgctcttccaattgattcttctaagctttctccccagccaatgcgtactttggatgtcaaggcggaagaagatcagaaattgacagaacatttcattcgtctgcagaagttcctgaaacagtgtgatgaagcaaaccaaacagaataccttcagctgcttctacgtttgtcaccacctgagcttagcagacatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="74278" stop="75532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="75190" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75387" g_stop="75427" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="654" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E344599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="75190"/>
          <exon e_start="75387" e_stop="75427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGCGTGAGTCTTAGAGTCTTTCTACATAACTTATAAGCAGTTGACTAATTTCATTTTGACTCCTCGTTTATGTTGTTTGTATGATTTGTTTCTCTCAGTGCTTCTGCATTAGTCACCTCCTGAGCTTAGCAGACATGTTTTGTCTAGTTTCATTTTGACTCCTTGTTTATGCTGTTTGTATGATTTGTCTTTCTGTCAGTGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCC</genome_strand>
        <mrna_strand>AGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC....................................................................................................................................................................................................TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274136" ref_strand="+" ref_description="SGN-E274136 [cLEN-8-C16]">
      <seq>ctcactcaaagaacctgagtcagttgcagaggacaattcctcaaaagcaaaatctacagagggaaggtagtaatggtcatcctcctgtagcatcaccaaagcatttggcacctatgatgacattttctcatggtggaccatcaattcctaattctattggcaaggctgctaacaactctcgtgctcttccaattgattcttctaagctttctccccagccaatgcgtactttggatgtcaaggcggaagaagatcagaaattgacagaacatttcattcgtctgcagaagttcctgaaacagtgtgatgaagcaaaccaaacagaataccttcagctgcttctacgtttgtcaccacctgagcttagcagacatgccgttgacttggagaaaagggctatccagttgacaatagaagaaggaaaggagatgcaacgagtgaagaacctcaatgttttgggaaaatccaccctgttttccagcttaactcagacagttccattagtcccaatcaagaaatgatgaagctaatgggcataattcatgttgcactgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="74555" stop="77112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74855" g_stop="75190" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75387" g_stop="75470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="420" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75471" i_stop="76674" i_length="1204">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76675" g_stop="76812" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="558" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E274136" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74855" e_stop="75190"/>
          <exon e_start="75387" e_stop="75470"/>
          <exon e_start="76675" e_stop="76812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGCGTGAGTCTTAGAGTCTTTCTACATAACTTATAAGCAGTTGACTAATTTCATTTTGACTCCTCGTTTATGTTGTTTGTATGATTTGTTTCTCTCAGTGCTTCTGCATTAGTCACCTCCTGAGCTTAGCAGACATGTTTTGTCTAGTTTCATTTTGACTCCTTGTTTATGCTGTTTGTATGATTTGTCTTTCTGTCAGTGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAGGTAAGCTGACAATAAACTGTTCGTTTTTTTCCCTACCCTTCATAGATGGGAGTTCCTGAATGGTTCATATGTTTAGATGTATGCATGTATAATGGAACTTTACTTACCCTTGCCTGATTTGGTGAAAGGCTGCCTTGTATTGATTTGTGTATCTATATGCTACCTCCATTTCAATTTGTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGGATGTCTCTTTCCCATTTTGAAAACTCTTTCATTTCAATTTTCCATGTAACATGTTTAAGACCACAAGTTAAAAAGATATTTTGGTACATTCAACATGTTTTTTAGTTTAAGACCACAAGATTAAAAAATATTCTTTATTTTTTAAATTCCGTGTCTAGTCAAAACCATACAAACAAATTGAAATTGAGAGAGTACGTATTTATGACTATCTGTAAAAAAGTGTGGCTAAGTCTAAGTGGACTTTATCCAAGGTTACTGAAGTCGTTGAATCTCCTCTTGCATTTTGGTAGATGTTGTTACATTGGCTAGTTGAATCAAGCACCCAACACTCTCCAGTGCATGACATGTTACTATATATTCTAATTATATTAGGAAGAGTATTTGCTCAACTTCTCATGCTTATATTAGAGGTTGACATCCCCTTCCACACCCTTCAGTGGGAATATGATCTGCTCATGTGGGGAAGCTGTATGTATGCAAGATGTACCTCCCCTGCCTTAGGACCAGGGACGGAGTCGGGTAGGGTCGAGGGGGTTTGGATGGACCTGTTTATACTTGATCAAAATTATTTTTTACTGTATACATAGTAGATATTGCACCCCATTTGGCTTCTTCTTGTGTTTACTTCTTTATATTTTGAACCACCCTTAGTGAAAATCTTGGCTCCGCCACTACTTAGGAGGTGATATAATTGGAACACACAGAATGAGAGTCTAGATGTAGGTACTCAGCCGTCTTATGTGCACACAATGTGGAAGTCCGACTACAATAAGGTTTCAAAGCTTATATAATCACCACTTGCTTCAAATGAGTCAAGAATGAGGCTTTAAGCCTTGAACCTCACAACCTTGCGAGTTGTTTATTCACACTAATGGTATCCCTTTGTTCTTGGTGGTTGTAAACATTTTCCAGATCTGTTGAGAAAGTATGGTAAAAGTGATCAACGCAAGAACATTTCAGTAAAACTTCCGTTTTCTATGTTCAATGCAGGAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCA</genome_strand>
        <mrna_strand>CTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC....................................................................................................................................................................................................TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGGCATAATTCATGTTGCACTGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713095" ref_strand="+" ref_description="SGN-E713095 [FB06CH01]">
      <seq>gtcaaggcggaagaagatcagaaattgacagaacatttcattcgtctgcagaagttcctgaaacagtgtgatgaagcaaaccaaacagaataccttcagctgcttctacgtttgtcaccacctgagcttagcagacatgccgttgacttggagaaaagggctatccagttgacaatagaagaaggaaaggagatgcaacgagtgaagaacctcaatgttttgggaaaatccaccctgttttccagcttaactcagacagttccattagtcccaatcaagaaatgatgaagctaatggcaataattcatgttgcactgatgcaatgcctgttttaaaacttgtactccactgggtacaagatcttgagaggaggctattaggcgttggcttctttagacatctatagtcttttttttctctttatagtaagttttttccttttgattagctagccctctagagatgaagaagttatcaaacactgtactttggtattcttttgggtataagcagttcatactanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="74791" stop="77312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75091" g_stop="75190" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75387" g_stop="75470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="184" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75471" i_stop="76674" i_length="1204">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76675" g_stop="77011" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="521" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="541"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E713095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75091" e_stop="75190"/>
          <exon e_start="75387" e_stop="75470"/>
          <exon e_start="76675" e_stop="77011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGCGTGAGTCTTAGAGTCTTTCTACATAACTTATAAGCAGTTGACTAATTTCATTTTGACTCCTCGTTTATGTTGTTTGTATGATTTGTTTCTCTCAGTGCTTCTGCATTAGTCACCTCCTGAGCTTAGCAGACATGTTTTGTCTAGTTTCATTTTGACTCCTTGTTTATGCTGTTTGTATGATTTGTCTTTCTGTCAGTGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAGGTAAGCTGACAATAAACTGTTCGTTTTTTTCCCTACCCTTCATAGATGGGAGTTCCTGAATGGTTCATATGTTTAGATGTATGCATGTATAATGGAACTTTACTTACCCTTGCCTGATTTGGTGAAAGGCTGCCTTGTATTGATTTGTGTATCTATATGCTACCTCCATTTCAATTTGTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGGATGTCTCTTTCCCATTTTGAAAACTCTTTCATTTCAATTTTCCATGTAACATGTTTAAGACCACAAGTTAAAAAGATATTTTGGTACATTCAACATGTTTTTTAGTTTAAGACCACAAGATTAAAAAATATTCTTTATTTTTTAAATTCCGTGTCTAGTCAAAACCATACAAACAAATTGAAATTGAGAGAGTACGTATTTATGACTATCTGTAAAAAAGTGTGGCTAAGTCTAAGTGGACTTTATCCAAGGTTACTGAAGTCGTTGAATCTCCTCTTGCATTTTGGTAGATGTTGTTACATTGGCTAGTTGAATCAAGCACCCAACACTCTCCAGTGCATGACATGTTACTATATATTCTAATTATATTAGGAAGAGTATTTGCTCAACTTCTCATGCTTATATTAGAGGTTGACATCCCCTTCCACACCCTTCAGTGGGAATATGATCTGCTCATGTGGGGAAGCTGTATGTATGCAAGATGTACCTCCCCTGCCTTAGGACCAGGGACGGAGTCGGGTAGGGTCGAGGGGGTTTGGATGGACCTGTTTATACTTGATCAAAATTATTTTTTACTGTATACATAGTAGATATTGCACCCCATTTGGCTTCTTCTTGTGTTTACTTCTTTATATTTTGAACCACCCTTAGTGAAAATCTTGGCTCCGCCACTACTTAGGAGGTGATATAATTGGAACACACAGAATGAGAGTCTAGATGTAGGTACTCAGCCGTCTTATGTGCACACAATGTGGAAGTCCGACTACAATAAGGTTTCAAAGCTTATATAATCACCACTTGCTTCAAATGAGTCAAGAATGAGGCTTTAAGCCTTGAACCTCACAACCTTGCGAGTTGTTTATTCACACTAATGGTATCCCTTTGTTCTTGGTGGTTGTAAACATTTTCCAGATCTGTTGAGAAAGTATGGTAAAAGTGATCAACGCAAGAACATTTCAGTAAAACTTCCGTTTTCTATGTTCAATGCAGGAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</genome_strand>
        <mrna_strand>GTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC....................................................................................................................................................................................................TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277107" ref_strand="+" ref_description="SGN-E277107 [cLEN-22-P2]">
      <seq>atttcttcttccgttttctctctttcagtctaaatatttttctctttcttttgccatggatccttacaagtatcgtccttcaagtgctgccaattcccccttcatgacaactaactctggtgctcctgtgtataacaacaattcttccttgactgttggaactagagggccaattcttctcgaggattatcatctgctggagaagattgccaattttgatcgtgagagaatcccagagcgtgttgttcatgccagaggtgccagtgccaagggtttctttgaggtcacacatgatatatcccatcttacatgtgctgattttcttcgagctcctggtgtccagacacctgttattgtgaggttctctactgttatccacgagcgtggaagccctgaaaccctcagggaccccagaggatttgctgtaaaattttacaccagagagggtaactttgatttagttggaaacaacttccctgtcttcttcgtccgtgatggaatgaagttccctgacatggttcatgccctgaaaccaaatccaaagtcccacattcaggagaactggaggatccttgatttcttctctcaccatccagaaagtcttcatatgttcagtttcctgtttgatgatctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="78548" stop="82023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78848" g_stop="78917" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79589" g_stop="79685" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="167" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80630" g_stop="80907" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="445" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80908" i_stop="81531" i_length="624">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81532" g_stop="81723" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="637" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E277107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78848" e_stop="78917"/>
          <exon e_start="79589" e_stop="79685"/>
          <exon e_start="80630" e_stop="80907"/>
          <exon e_start="81532" e_stop="81723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAGGTATTTTTTTTTTCAATTTTTATTGAAGAATTTTATTGATTTTATAGGATTTTTTTTGTGTGTTTTTTTTTAAAAAATTTGATCTGTGTAGTTGCAGTAGATTCCTTTTGATTTTCCAAAAAAAGGAATTTTTTTTGTTTGTTGTTTAATTTGATTTTGTGGATTGTTATATTTTGTGAAACTTCTTTTTTTTTTTATCGTTTTGATTGTGGTTTGTGAAGGATATATGCGGGGAAATTGAGATTCCGTTTTTTTTTTTTTTTTTTGATGTTTTTTTTTGTTTAATTTGGTGGTTGAAGCTCATTTTGCCCTAGTTTTGTGGGTTGATTTATAAGAGACTGCGGGTTTATGTCTAGTTAACCTCAGTTTTTTTAAGAGAAGGGTAACTAGAAAACCTCAGTTTTATCTGTTATCGAATGATATTTTTTTATGTCAACTTTTTTTAATGGGACTTTATGATATAATAACTGTTTGAGAAATCAAGTTGTGCTTCCATATCTATTATATGGTTTGGTAAGGGTATACGTGAATGTTGGTTTATATTTTTGTTGGTGCAACTTTTTGGAAATTGATGAGCTAGAATTATTAGGATGTCCAGAGGATTTTTGGTTGGTTTATATCATATTTGAACATACGAGGTTTATGATTAATGATTGTGAGGTTTGATGCAGTATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAGGTACTCTTTAGCTTCTCTTATCTTTATTCTGATGTGTAAAGTTCACGTTTTTATTCAATTTTTTGGGTATAAGAACATAGTCCTGACCTTGAAAAGGGAGAGTGTTGATAAATAGACAGCCAACAGTAGCGAGTTTGGGTATTTCAAGGTGTAGTTGATTGATAAGAGCAATTATTCCTTCTATCTTGTGATTTTTTGTGCGTGTGGGAAACAAGATGCCAGTATGATATATCTTGTCGTTTTGGGGACATGCATTTGGTTAGCTACTTAAATGAGTAAGATGATATAAGTTTAGACACTATAGTGTCTGTTATCTCTGGGTGTGCATATGTTCCCATTTGTATTTCTGGGTGTGCATATCTTTTGTTTGTGTAGATCATTATGAATACATATATATGGAAACCAACAGGAACTACTGTTCTCCTGCATTGTTAGCTTGTTATTGGTCCTCCTTGATGCTCAATTAGAAAAAAGTGTGTGATCTAGATGGTCAATTTGGTATAAGGTGACTTACTGTTTTTATTCTTGGATATATTCCTTGATGTTCCACTCTTTTGAAGAATTATTCAACATGGTATGAGTAACGTTGGTCATAACGGTTTCCAGAATATACTGTAATAAAATAGGAAAATGTAGATGGTTGAAAGGTGGAAACAATTCGTGATGGGAACTTCAAGATTATCACTTCTCACTTTTTCTATGTCATTTGAATAATTTCACCGGCAAGGATTGATAGAATTTGCTTAAAAGGCTAAATAGCTCTTTGCATATTACAAATAATGCAATTTGTCCTGTGTAATAGAGGTGCTTTTCATGATCAGTACAAATAAAATTCTGTAGTTTTTTGTTTTAGAGATTATCATAATAACATTTATAGAATTTTCCAGTTTTAGTGGATTTCTCACCATGGATAAGAATATTGAAACTTGTTATTCTTTTTTCAGGGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAGGTAATTTCTTATGCTAGTTTTTTCTTGCAATGTCTTCATTGTCAGACTTCCATTTATCAGTACCCCAAAATTGTATGCCTGTCAAGCTGGTAAGAGACCATTGCTGAAACACAGACTTGTATTTCATCTCTCCCTAGCTTTGAAGTCAGCAATTGATTTTGTAGAACAGGTTGAAGAAAGGTATATGTTATGTGAGAAGTGTTTGGTTTAAGCCTCTAGTGATATGCCTAATTTGCAAAATTTTCTATTTGTTTGGTCCTTCTTAGTAATTTTAGACAGCGACACAATTGCTCATATGAATTTGTTCAGATTTATAATCTCAATCTCGTCGAAATCCAACGAACTGTTTATAAGCCTAAACACCACGCGGTGCTGTTTTTTGATGGTTTTGATCACTCATGGATTCTGAAAAATACGATGTTGAAGGGAGTATTCATTTGTAAAAGGGAGTGTTCAAAATCAATGAAGTGTATCAAGTGTCCTTCATTCCCTGGTTTTTGTTCTTATGAATTTCATCTGATGGAAATAACCATTTACTTGATAGCCATTTTCTGTTTCCTGATCAATGAATGCACTGCACTTCTTTTGTGTTTGCTGTTCGTGGCTGAAGCTTTTGTATTTCAGGGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGA</genome_strand>
        <mrna_strand>ATTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701423" ref_strand="+" ref_description="SGN-E701423 [FA15DG03]">
      <seq>cctcttcttccgttttctctctttcagtctaaatatttttctctttcttttgccatggatccttacaagtatcgtccttcaagtgctgccaattcccccttcatgacaactaactctggtgctcctgtgtataacaacaattcttccttgactgttggaactagagggccaattcttctcgaggattatcatctgctggagaagattgccaattttgatcgtgagagaatcccagagcgtgttgttcatgccagaggtgccagtgccaagggtttctttgaggtcacacatgatatatcccatcttacatgtgctgattttcttcgagctcctggtgtccagacacctgttattgtgaggttctctactgttatccacgagcgtggaagccctgaaaccctcagggaccccagaggatttgctgtaaaattttacaccagagagggtaactttgatttagttggaaacaacttccctgtcttcttcgtccgtgatggaatgaagttccctgacatggttcatgccctgaaaccaaatccaaagtcccacattcaggagaactggaggatccttgatttcttctctcaccatccagaaagtcttcatatgttcagtttcctgtttgatgatctgggaattccacaagattacaggcacatggatggtttcggtgttaatacctacatgctgatcaacaaagctgggaaagcacagtatgtgaaattccattggaagccaacttgtggagtcaaatgcttgttggatgaagaagctattaaagtcggtggatcacatcatagtcatgccaccaaggatctctatgattcaattgctgctgggaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="78551" stop="82233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78849" g_stop="78917" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79589" g_stop="79685" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="166" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80630" g_stop="80907" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="444" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80908" i_stop="81531" i_length="624">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81532" g_stop="81933" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="846" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E701423" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78849" e_stop="78917"/>
          <exon e_start="79589" e_stop="79685"/>
          <exon e_start="80630" e_stop="80907"/>
          <exon e_start="81532" e_stop="81933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAGGTATTTTTTTTTTCAATTTTTATTGAAGAATTTTATTGATTTTATAGGATTTTTTTTGTGTGTTTTTTTTTAAAAAATTTGATCTGTGTAGTTGCAGTAGATTCCTTTTGATTTTCCAAAAAAAGGAATTTTTTTTGTTTGTTGTTTAATTTGATTTTGTGGATTGTTATATTTTGTGAAACTTCTTTTTTTTTTTATCGTTTTGATTGTGGTTTGTGAAGGATATATGCGGGGAAATTGAGATTCCGTTTTTTTTTTTTTTTTTTGATGTTTTTTTTTGTTTAATTTGGTGGTTGAAGCTCATTTTGCCCTAGTTTTGTGGGTTGATTTATAAGAGACTGCGGGTTTATGTCTAGTTAACCTCAGTTTTTTTAAGAGAAGGGTAACTAGAAAACCTCAGTTTTATCTGTTATCGAATGATATTTTTTTATGTCAACTTTTTTTAATGGGACTTTATGATATAATAACTGTTTGAGAAATCAAGTTGTGCTTCCATATCTATTATATGGTTTGGTAAGGGTATACGTGAATGTTGGTTTATATTTTTGTTGGTGCAACTTTTTGGAAATTGATGAGCTAGAATTATTAGGATGTCCAGAGGATTTTTGGTTGGTTTATATCATATTTGAACATACGAGGTTTATGATTAATGATTGTGAGGTTTGATGCAGTATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAGGTACTCTTTAGCTTCTCTTATCTTTATTCTGATGTGTAAAGTTCACGTTTTTATTCAATTTTTTGGGTATAAGAACATAGTCCTGACCTTGAAAAGGGAGAGTGTTGATAAATAGACAGCCAACAGTAGCGAGTTTGGGTATTTCAAGGTGTAGTTGATTGATAAGAGCAATTATTCCTTCTATCTTGTGATTTTTTGTGCGTGTGGGAAACAAGATGCCAGTATGATATATCTTGTCGTTTTGGGGACATGCATTTGGTTAGCTACTTAAATGAGTAAGATGATATAAGTTTAGACACTATAGTGTCTGTTATCTCTGGGTGTGCATATGTTCCCATTTGTATTTCTGGGTGTGCATATCTTTTGTTTGTGTAGATCATTATGAATACATATATATGGAAACCAACAGGAACTACTGTTCTCCTGCATTGTTAGCTTGTTATTGGTCCTCCTTGATGCTCAATTAGAAAAAAGTGTGTGATCTAGATGGTCAATTTGGTATAAGGTGACTTACTGTTTTTATTCTTGGATATATTCCTTGATGTTCCACTCTTTTGAAGAATTATTCAACATGGTATGAGTAACGTTGGTCATAACGGTTTCCAGAATATACTGTAATAAAATAGGAAAATGTAGATGGTTGAAAGGTGGAAACAATTCGTGATGGGAACTTCAAGATTATCACTTCTCACTTTTTCTATGTCATTTGAATAATTTCACCGGCAAGGATTGATAGAATTTGCTTAAAAGGCTAAATAGCTCTTTGCATATTACAAATAATGCAATTTGTCCTGTGTAATAGAGGTGCTTTTCATGATCAGTACAAATAAAATTCTGTAGTTTTTTGTTTTAGAGATTATCATAATAACATTTATAGAATTTTCCAGTTTTAGTGGATTTCTCACCATGGATAAGAATATTGAAACTTGTTATTCTTTTTTCAGGGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAGGTAATTTCTTATGCTAGTTTTTTCTTGCAATGTCTTCATTGTCAGACTTCCATTTATCAGTACCCCAAAATTGTATGCCTGTCAAGCTGGTAAGAGACCATTGCTGAAACACAGACTTGTATTTCATCTCTCCCTAGCTTTGAAGTCAGCAATTGATTTTGTAGAACAGGTTGAAGAAAGGTATATGTTATGTGAGAAGTGTTTGGTTTAAGCCTCTAGTGATATGCCTAATTTGCAAAATTTTCTATTTGTTTGGTCCTTCTTAGTAATTTTAGACAGCGACACAATTGCTCATATGAATTTGTTCAGATTTATAATCTCAATCTCGTCGAAATCCAACGAACTGTTTATAAGCCTAAACACCACGCGGTGCTGTTTTTTGATGGTTTTGATCACTCATGGATTCTGAAAAATACGATGTTGAAGGGAGTATTCATTTGTAAAAGGGAGTGTTCAAAATCAATGAAGTGTATCAAGTGTCCTTCATTCCCTGGTTTTTGTTCTTATGAATTTCATCTGATGGAAATAACCATTTACTTGATAGCCATTTTCTGTTTCCTGATCAATGAATGCACTGCACTTCTTTTGTGTTTGCTGTTCGTGGCTGAAGCTTTTGTATTTCAGGGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTAT</genome_strand>
        <mrna_strand>CCTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAAGTCGGTGGATCACATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277103" ref_strand="+" ref_description="SGN-E277103 [cLEN-22-N2]">
      <seq>cttctttcgttttctctctttcagtctaaatattcttctctttcttttgccatggatccttacaagtatcgcacttcaagtgctgccaattcccccttcatgacaactaactctggtgctcctgtgtataacaacaattcttccttgactgttggaactagagggccaattcttatcgaggattatcatctgctggagaagattgccaattttgatcgcgagagaatcccagagcgtgttgctcatgccagaggtgccagggccaatggtttctttgaggtcacacatgatatatcccatcttacatgtgctgattttcttcaagctcctggtgtccagacacctgttattgggagggactctactgatatccacgagcgtggaagccctgaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="78552" stop="81163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78852" g_stop="78917" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79589" g_stop="79685" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="163" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80630" g_stop="80863" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="397" r_length="234" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E277103" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78852" e_stop="78917"/>
          <exon e_start="79589" e_stop="79685"/>
          <exon e_start="80630" e_stop="80863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAGGTATTTTTTTTTTCAATTTTTATTGAAGAATTTTATTGATTTTATAGGATTTTTTTTGTGTGTTTTTTTTTAAAAAATTTGATCTGTGTAGTTGCAGTAGATTCCTTTTGATTTTCCAAAAAAAGGAATTTTTTTTGTTTGTTGTTTAATTTGATTTTGTGGATTGTTATATTTTGTGAAACTTCTTTTTTTTTTTATCGTTTTGATTGTGGTTTGTGAAGGATATATGCGGGGAAATTGAGATTCCGTTTTTTTTTTTTTTTTTTGATGTTTTTTTTTGTTTAATTTGGTGGTTGAAGCTCATTTTGCCCTAGTTTTGTGGGTTGATTTATAAGAGACTGCGGGTTTATGTCTAGTTAACCTCAGTTTTTTTAAGAGAAGGGTAACTAGAAAACCTCAGTTTTATCTGTTATCGAATGATATTTTTTTATGTCAACTTTTTTTAATGGGACTTTATGATATAATAACTGTTTGAGAAATCAAGTTGTGCTTCCATATCTATTATATGGTTTGGTAAGGGTATACGTGAATGTTGGTTTATATTTTTGTTGGTGCAACTTTTTGGAAATTGATGAGCTAGAATTATTAGGATGTCCAGAGGATTTTTGGTTGGTTTATATCATATTTGAACATACGAGGTTTATGATTAATGATTGTGAGGTTTGATGCAGTATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAGGTACTCTTTAGCTTCTCTTATCTTTATTCTGATGTGTAAAGTTCACGTTTTTATTCAATTTTTTGGGTATAAGAACATAGTCCTGACCTTGAAAAGGGAGAGTGTTGATAAATAGACAGCCAACAGTAGCGAGTTTGGGTATTTCAAGGTGTAGTTGATTGATAAGAGCAATTATTCCTTCTATCTTGTGATTTTTTGTGCGTGTGGGAAACAAGATGCCAGTATGATATATCTTGTCGTTTTGGGGACATGCATTTGGTTAGCTACTTAAATGAGTAAGATGATATAAGTTTAGACACTATAGTGTCTGTTATCTCTGGGTGTGCATATGTTCCCATTTGTATTTCTGGGTGTGCATATCTTTTGTTTGTGTAGATCATTATGAATACATATATATGGAAACCAACAGGAACTACTGTTCTCCTGCATTGTTAGCTTGTTATTGGTCCTCCTTGATGCTCAATTAGAAAAAAGTGTGTGATCTAGATGGTCAATTTGGTATAAGGTGACTTACTGTTTTTATTCTTGGATATATTCCTTGATGTTCCACTCTTTTGAAGAATTATTCAACATGGTATGAGTAACGTTGGTCATAACGGTTTCCAGAATATACTGTAATAAAATAGGAAAATGTAGATGGTTGAAAGGTGGAAACAATTCGTGATGGGAACTTCAAGATTATCACTTCTCACTTTTTCTATGTCATTTGAATAATTTCACCGGCAAGGATTGATAGAATTTGCTTAAAAGGCTAAATAGCTCTTTGCATATTACAAATAATGCAATTTGTCCTGTGTAATAGAGGTGCTTTTCATGATCAGTACAAATAAAATTCTGTAGTTTTTTGTTTTAGAGATTATCATAATAACATTTATAGAATTTTCCAGTTTTAGTGGATTTCTCACCATGGATAAGAATATTGAAACTTGTTATTCTTTTTTCAGGGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCC</genome_strand>
        <mrna_strand>CTTCTTTCGTTTTCTCTCTTTCAGTCTAAATATTCTTCTCTTTCTTTTGCCATGGATCCTTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCACTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAATTCTTATCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGCGAGAGAATCCCAGAGCGTGTTGCTCATGCCAGAGGTGCCAGGGCCAATGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCAAGCTCCTGGTGTCCAGACACCTGTTATTGGGAGGGACTCTACTGATATCCACGAGCGTGGAAGCCCTGAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267594" ref_strand="+" ref_description="SGN-E267594 [cLEI-8-F3]">
      <seq>tgctctcgggaaactctacgtgtactctaagtataattctactttcttttgccatggatccttacaagtatcgtccttcaagagctgccaattcccccttcatgacaactaactctggtgctcctgtgtataacaaccattcttccttgactgttggaactagagggccaattcttctcgaggattatcatctgctggagaagattgccaattttgatcgtgagagaatcccatagcgtgttgttcatgccaaaagtgccagtgccaagggtttctttgaggtcacacatgatatatcccatcttacatgtgctgattttcttcgagctcctggtgttcagacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="78565" stop="81110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78876" g_stop="78917" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="68" r_length="43" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671">
            <donor d_prob="0.954" d_score="0.88"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79589" g_stop="79685" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="165" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80630" g_stop="80810" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="346" r_length="181" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E267594" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78876" e_stop="78917"/>
          <exon e_start="79589" e_stop="79685"/>
          <exon e_start="80630" e_stop="80810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATATTTTTCT-CTTTCTTTTGCCATGGATCCTTACAAGGTATTTTTTTTTTCAATTTTTATTGAAGAATTTTATTGATTTTATAGGATTTTTTTTGTGTGTTTTTTTTTAAAAAATTTGATCTGTGTAGTTGCAGTAGATTCCTTTTGATTTTCCAAAAAAAGGAATTTTTTTTGTTTGTTGTTTAATTTGATTTTGTGGATTGTTATATTTTGTGAAACTTCTTTTTTTTTTTATCGTTTTGATTGTGGTTTGTGAAGGATATATGCGGGGAAATTGAGATTCCGTTTTTTTTTTTTTTTTTTGATGTTTTTTTTTGTTTAATTTGGTGGTTGAAGCTCATTTTGCCCTAGTTTTGTGGGTTGATTTATAAGAGACTGCGGGTTTATGTCTAGTTAACCTCAGTTTTTTTAAGAGAAGGGTAACTAGAAAACCTCAGTTTTATCTGTTATCGAATGATATTTTTTTATGTCAACTTTTTTTAATGGGACTTTATGATATAATAACTGTTTGAGAAATCAAGTTGTGCTTCCATATCTATTATATGGTTTGGTAAGGGTATACGTGAATGTTGGTTTATATTTTTGTTGGTGCAACTTTTTGGAAATTGATGAGCTAGAATTATTAGGATGTCCAGAGGATTTTTGGTTGGTTTATATCATATTTGAACATACGAGGTTTATGATTAATGATTGTGAGGTTTGATGCAGTATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAGGTACTCTTTAGCTTCTCTTATCTTTATTCTGATGTGTAAAGTTCACGTTTTTATTCAATTTTTTGGGTATAAGAACATAGTCCTGACCTTGAAAAGGGAGAGTGTTGATAAATAGACAGCCAACAGTAGCGAGTTTGGGTATTTCAAGGTGTAGTTGATTGATAAGAGCAATTATTCCTTCTATCTTGTGATTTTTTGTGCGTGTGGGAAACAAGATGCCAGTATGATATATCTTGTCGTTTTGGGGACATGCATTTGGTTAGCTACTTAAATGAGTAAGATGATATAAGTTTAGACACTATAGTGTCTGTTATCTCTGGGTGTGCATATGTTCCCATTTGTATTTCTGGGTGTGCATATCTTTTGTTTGTGTAGATCATTATGAATACATATATATGGAAACCAACAGGAACTACTGTTCTCCTGCATTGTTAGCTTGTTATTGGTCCTCCTTGATGCTCAATTAGAAAAAAGTGTGTGATCTAGATGGTCAATTTGGTATAAGGTGACTTACTGTTTTTATTCTTGGATATATTCCTTGATGTTCCACTCTTTTGAAGAATTATTCAACATGGTATGAGTAACGTTGGTCATAACGGTTTCCAGAATATACTGTAATAAAATAGGAAAATGTAGATGGTTGAAAGGTGGAAACAATTCGTGATGGGAACTTCAAGATTATCACTTCTCACTTTTTCTATGTCATTTGAATAATTTCACCGGCAAGGATTGATAGAATTTGCTTAAAAGGCTAAATAGCTCTTTGCATATTACAAATAATGCAATTTGTCCTGTGTAATAGAGGTGCTTTTCATGATCAGTACAAATAAAATTCTGTAGTTTTTTGTTTTAGAGATTATCATAATAACATTTATAGAATTTTCCAGTTTTAGTGGATTTCTCACCATGGATAAGAATATTGAAACTTGTTATTCTTTTTTCAGGGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACC</genome_strand>
        <mrna_strand>TCTAAGTATAATTCTACTTTCTTTTGCCATGGATCCTTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTCCTTCAAGAGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACCATTCTTCCTTGACTGTTGGAACTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCATAGCGTGTTGTTCATGCCAAAAGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTTCAGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374961" ref_strand="-" ref_description="SGN-E374961 [TUS-15-M9](-)">
      <seq>ttcttcgagctcctggtgtccagacacctgttattgtgaggttctctactgttatccacgagcgtggaagccctgaaaccctcagggaccccagaggatttgctgtaaaattttacaccagagagggtaactttgatttagttggaaacaacttccctgtcttcttcgtccgtgatggaatgaagttccctgacatggttcatgccctgaaaccaaatccaaagtcccacattcaggagaactggaggatccttgatttcttctctcaccatccagaaagtcttcatatgttcagtttcctgtttgatgatctgggaattccacaagattacaggcacatggatggtttcggtgttaatacctacatgctgatcaacaaagctgggaaagcacagtatgtgaaattccattggaagccaacttgtggagtcaaatgcttgttggatgaagaagctattaaggtcggtggatcaaatcatagtcatgccaccaaggatctctatgattcaattgctgctgggaactatccagagtggaaactgttcatccaaactattgatcctgatcatgaagacagatttgactatgacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="80483" stop="82299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80783" g_stop="80907" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80908" i_stop="81531" i_length="624">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81532" g_stop="81999" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="593" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E374961" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374961" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80783" e_stop="80907"/>
          <exon e_start="81532" e_stop="81999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAGGTAATTTCTTATGCTAGTTTTTTCTTGCAATGTCTTCATTGTCAGACTTCCATTTATCAGTACCCCAAAATTGTATGCCTGTCAAGCTGGTAAGAGACCATTGCTGAAACACAGACTTGTATTTCATCTCTCCCTAGCTTTGAAGTCAGCAATTGATTTTGTAGAACAGGTTGAAGAAAGGTATATGTTATGTGAGAAGTGTTTGGTTTAAGCCTCTAGTGATATGCCTAATTTGCAAAATTTTCTATTTGTTTGGTCCTTCTTAGTAATTTTAGACAGCGACACAATTGCTCATATGAATTTGTTCAGATTTATAATCTCAATCTCGTCGAAATCCAACGAACTGTTTATAAGCCTAAACACCACGCGGTGCTGTTTTTTGATGGTTTTGATCACTCATGGATTCTGAAAAATACGATGTTGAAGGGAGTATTCATTTGTAAAAGGGAGTGTTCAAAATCAATGAAGTGTATCAAGTGTCCTTCATTCCCTGGTTTTTGTTCTTATGAATTTCATCTGATGGAAATAACCATTTACTTGATAGCCATTTTCTGTTTCCTGATCAATGAATGCACTGCACTTCTTTTGTGTTTGCTGTTCGTGGCTGAAGCTTTTGTATTTCAGGGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTATCCAGAGTGGAAACTGTTCATCCAAACTATTGATCCTGATCATGAAGACAGATTTGACTTTGACCCC</genome_strand>
        <mrna_strand>TTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTATCCAGAGTGGAAACTGTTCATCCAAACTATTGATCCTGATCATGAAGACAGATTTGACTATGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380027" ref_strand="+" ref_description="SGN-E380027 [TUS-1-P6](-)">
      <seq>agaatgagcagcttgctttttgccctgccattattgtccgtggtgtttactattcggatgataagcttctccaaactagggtattctcatatgctgatacccagagacaccgccttggtccaaactatctgcagctcccagttaatgctcccaagtgtgctcatcacaataatcaccatgaaggtctcatgaatttcatgcaccgtgatgaagaggtcaactatttgccctcaaggcttgatccttgtcgtcatgcggagcagtaccctattcctcctcgtgtcttgacaggaaaacgcgaaaaggtcatcattgagaaagagaacaactttaagcagccaggagaacattacagatcttgggcaccggacaggcaagaaagatttttgtgcagatgggttgatgctctatctgatcctcgagccactcatgaaattcgcagtatctggatctcatactggtcacaggctgacaagtctcttggtcagaagctcgcgtctcgtctcaatataaggcctacaatgtgaagatgaaaatgtgttggtgtagtgaagaagtaatccaagaaaaaaatgtttgttttgggtggtagtttggttgtgtaccaacaaactttcttgtgttagttctgatcactttctgaataaattggacgttttagtctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="81794" stop="83619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82094" g_stop="82308" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82309" i_stop="82571" i_length="263">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82572" g_stop="82661" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="305" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82775" g_stop="82842" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="373" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82927" g_stop="83020" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="467" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83119" g_stop="83319" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="668" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E380027" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82094" e_stop="82308"/>
          <exon e_start="82572" e_stop="82661"/>
          <exon e_start="82775" e_stop="82842"/>
          <exon e_start="82927" e_stop="83020"/>
          <exon e_start="83119" e_stop="83319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGCAGCTTGCTTTTTGCCCTGCCATTATTGTCCCTGGTGTTTACTATTCGGATGATAAGCTTCTCCAAACTAGGGTATTCTCATATGCTGATACCCAGAGACACCGCCTTGGTCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAATAATCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAGGTATAGTACATCCTTGAGGTTGCTATTTTTAGTGGATTGTTTAGAGTAGAAATATTTATCCACTTCACAAGGAAAGACAAGGGGTTGTTAATCATATTAGCCTAGTTGTTCCCTTGTCTATGTGAACTTAGCAAGGCAAGAAAGGTACTTTGGTCTGATGATGAAGCCTAGTTGCGAATTTTGCTTCTCACACTATTTTGGAAGTGCATGTATTGACAGTTTACTGTTTTGATGTGTTAACCTGATGTTGTATGCTGTTTCAGGTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAGGTGACACTATCTTATTTTTGGTGCAAAGTTAACCTTTCATAAATATAAATATTCTCCTTTTTCCCTAGTCTTGTTTCCTCCATATGTCTAAACCATGATGAGTTATATTGCAGGTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAGGTAGTCTAGTTCCTCTGTTATTTTCAGTCACCAAGTTTCCACCCCTATCAGTTATGTACTTATCTGCCGGCCTTGTGATTGCAGGCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAGGTCAAGAGTTCTTTCCTTTACATGCTACTACTTTAATCCCACATTTATCCTGAGGGACACAACGATAAGAATGTTTGTTTTGCATGTATATGGTGCAGGCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATA</genome_strand>
        <mrna_strand>AGAATGAGCAGCTTGCTTTTTGCCCTGCCATTATTGTCCGTGGTGTTTACTATTCGGATGATAAGCTTCTCCAAACTAGGGTATTCTCATATGCTGATACCCAGAGACACCGCCTTGGTCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAATAATCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAG.......................................................................................................................................................................................................................................................................GTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAG.................................................................................................................GTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAG....................................................................................GCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAG..................................................................................................GCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTTTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGGACGTTTTAGTCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374962" ref_strand="-" ref_description="SGN-E374962 [TUS-15-M9]">
      <seq>tcaccataaaggtctcatgaatttcatgcaccgtgatgaaaaggtcaactatttgccctcaaggcttgatccttgtcgtcatgcggagcagtaccctattcctcctcgtgtcttgacagaaaaacgcgaaaaggtcatcattgagaaagagaacaactttaagcagccaggagaacattacagatcttgggcaccggacaggcaagaaagatttttgtgcagatgggttgatgctctatctgatcctcgagccactcatgaaattcgcagtatctggatctcatactggtcacaggctgacaagtctcttggtcaaaagctcgcgtctcgtctcaatataaggcctacaatgtgaagatgaaaatgtgttggtgtagtgaagaagtaatccaagaaaaaaatgtttgttttgggtggtagtttggttgtgtaccaacaaactttcttgtgttagttctgatcactttctgaataaattgaacgttttagtctcataaagtgggtgtttctatgaggttatatcatacataataacgaatatacagttggatcataaaaaaaaaaaaaaaaaaaactcggactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="81966" stop="83680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82266" g_stop="82308" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82309" i_stop="82571" i_length="263">
            <donor d_prob="0.997" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82572" g_stop="82661" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="133" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82775" g_stop="82842" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="201" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82927" g_stop="83020" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="295" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83119" g_stop="83380" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="557" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="575"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E374962" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374962" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82266" e_stop="82308"/>
          <exon e_start="82572" e_stop="82661"/>
          <exon e_start="82775" e_stop="82842"/>
          <exon e_start="82927" e_stop="83020"/>
          <exon e_start="83119" e_stop="83380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAGGTATAGTACATCCTTGAGGTTGCTATTTTTAGTGGATTGTTTAGAGTAGAAATATTTATCCACTTCACAAGGAAAGACAAGGGGTTGTTAATCATATTAGCCTAGTTGTTCCCTTGTCTATGTGAACTTAGCAAGGCAAGAAAGGTACTTTGGTCTGATGATGAAGCCTAGTTGCGAATTTTGCTTCTCACACTATTTTGGAAGTGCATGTATTGACAGTTTACTGTTTTGATGTGTTAACCTGATGTTGTATGCTGTTTCAGGTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAGGTGACACTATCTTATTTTTGGTGCAAAGTTAACCTTTCATAAATATAAATATTCTCCTTTTTCCCTAGTCTTGTTTCCTCCATATGTCTAAACCATGATGAGTTATATTGCAGGTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAGGTAGTCTAGTTCCTCTGTTATTTTCAGTCACCAAGTTTCCACCCCTATCAGTTATGTACTTATCTGCCGGCCTTGTGATTGCAGGCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAGGTCAAGAGTTCTTTCCTTTACATGCTACTACTTTAATCCCACATTTATCCTGAGGGACACAACGATAAGAATGTTTGTTTTGCATGTATATGGTGCAGGCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</genome_strand>
        <mrna_strand>TCACCATAAAGGTCTCATGAATTTCATGCACCGTGATGAAAAG.......................................................................................................................................................................................................................................................................GTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGAAAAACGCGAAAAG.................................................................................................................GTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAG....................................................................................GCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAG..................................................................................................GCTGACAAGTCTCTTGGTCAAAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTTTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379621" ref_strand="-" ref_description="SGN-E379621 [TUS-1-P6]">
      <seq>aggaaaacgcgaaaaggtcctcattgagaaagagaacaactttaagcagcccggagaacatttcagattttgggccccggaccggcaagaaaaatttttgtgcagaagggttgaagctttatttgatcctcgagcccctcatgaaattcgcagtatttggatttcatactggtcacagggtgacaagttttttggtcagaagctcgcgtttcgtttcaatataaggcctccaatgtgaagatgaaaatgtgttggtgttgtgaagaagtaatcccagaaaaaaatgtttgttttggggggtagtttggttgtgtacccacaaacttttttgtgttagttttgatccctttttgaataaattgaacgttttagtttcataaagggggggtttttttggggttttttcatacataataccgaatattcagttgggtccttaaaaaaaaaaaaaaaaaaactcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="82473" stop="83680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82646" g_stop="82661" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82775" g_stop="82842" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="84" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84">
            <donor d_prob="0.766" d_score="0.90"/>
            <acceptor a_prob="0.930" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82927" g_stop="83020" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="178" r_length="94" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83119" g_stop="83380" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="440" r_length="262" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="458"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E379621" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379621" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82646" e_stop="82661"/>
          <exon e_start="82775" e_stop="82842"/>
          <exon e_start="82927" e_stop="83020"/>
          <exon e_start="83119" e_stop="83380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAACGCGAAAAGGTGACACTATCTTATTTTTGGTGCAAAGTTAACCTTTCATAAATATAAATATTCTCCTTTTTCCCTAGTCTTGTTTCCTCCATATGTCTAAACCATGATGAGTTATATTGCAGGTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAGGTAGTCTAGTTCCTCTGTTATTTTCAGTCACCAAGTTTCCACCCCTATCAGTTATGTACTTATCTGCCGGCCTTGTGATTGCAGGCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAGGTCAAGAGTTCTTTCCTTTACATGCTACTACTTTAATCCCACATTTATCCTGAGGGACACAACGATAAGAATGTTTGTTTTGCATGTATATGGTGCAGGCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</genome_strand>
        <mrna_strand>AGGAAAACGCGAAAAG.................................................................................................................GTCCTCATTGAGAAAGAGAACAACTTTAAGCAGCCCGGAGAACATTTCAGATTTTGGGCCCCGGACCG....................................................................................GCAAGAAAAATTTTTGTGCAGAAGGGTTGAAGCTTTATTTGATCCTCGAGCCCCTCATGAAATTCGCAGTATTTGGATTTCATACTGGTCACAG..................................................................................................GGTGACAAGTTTTTTGGTCAGAAGCTCGCGTTTCGTTTCAATATAAGGCCTCCAATGTGAAGATGAAAATGTGTTGGTGTTGTGAAGAAGTAATCCCAGAAAAAAATGTTTGTTTTGGGGGGTAGTTTGGTTGTGTACCCACAAACTTTTTTGTGTTAGTTTTGATCCCTTTTTGAATAAATTGAACGTTTTAGTTTCATAAAGGGGGGGTTTTTTTGGGGTTTTTTCATACATAATACCGAATATTCAGTTGGGTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204646" ref_strand="-" ref_description="SGN-E204646 [cLEC-14-I8]">
      <seq>tttttgtgcagatgggttgatgctctatctgatcctcgagccactcatgaaattcgcagtatctggatctcatactggtcacaggctgacaagtctcttggtcagaagctcgcgtctcgtctcaatataaggcctacaatgtgaagatgaaaatgtgttggtgtagtgaagaagtaatccaagaaaaaaatgtttgttttgggtggtagtttggttgtgtaccaacaaactttcttgtgttagttctgatcactttctgaataaattgaacgttttagtctcataaagtgggtgtttctatgaggttatatcatacataataacgaatatacagttggatcctaaaaaaaaaaaaaaaaaaaactcggactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="82637" stop="83680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82937" g_stop="83020" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83119" g_stop="83380" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="346" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="364"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E204646" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82937" e_stop="83020"/>
          <exon e_start="83119" e_stop="83380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAGGTCAAGAGTTCTTTCCTTTACATGCTACTACTTTAATCCCACATTTATCCTGAGGGACACAACGATAAGAATGTTTGTTTTGCATGTATATGGTGCAGGCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</genome_strand>
        <mrna_strand>TTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAG..................................................................................................GCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTTTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542963" ref_strand="+" ref_description="SGN-E542963 [TUS-64-I14]">
      <seq>ggcggcggaagaagaagaaatcagaaatgggagcaagcagtgatccgaaccagcaagatggttccgacgaacagcagagacgctccgagatctacacctacgaggctccatggcacatatacgctatgaattggagtgttcgcaaggataagaagtatcgtctcgccattgctagcttgctcgagcagtaccaaaaccgagttgagattgtgcagcttgatgactctaatggtgagattcggtccgacccgaaactctcatttgagcacccgtatccgcctacgaaagttatcttcatacccgataaggagtgccagaagccggaccttatcgctacctctagtgattatctcaggatttggcgagtctccaatgataatagtcgggttgacatgaagagtcttcttaataacaaccggaacagtgagttttccggtccgttaacctcatttgactggaatgaagctgagccgaggcggattggtacgtcgagtattgatactacctgtactatatgggatattgagagggagactgtcgatacccagttaattgctcatgataaggaggtttatgatattgcttgnnggtgggggtttggagttttttgcttctgtttcagctgatgggtctgttaggggttttgatcttcgtgataaggagcactctacgataatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="84339" stop="85616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84639" g_stop="85316" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E542963" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84639" e_stop="85316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTG-GGGT-GGGG-TTGGAG-TTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATG</genome_strand>
        <mrna_strand>GGCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGNNGGTGGGGGTTTGGAGTTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGGTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302342" ref_strand="+" ref_description="SGN-E302342 [cLEW-27-A24]">
      <seq>gcggcggaagaagaagaaatcagaaatgggagcaagcagggatgcgaaccagcaagatggttccgacgaacagcagagacgctccgagatctacacctacgaggctccatggcacatatacgctatgaattggagtgttcgcaaggataagaagtatcgtctcgccattgctagcttgctcgagcagtaccaaaaccgagttgagattgtgcagcttgatgactctaatggtgagattcggtccgacccgaaactctcatttgagcacccgtatccgcctacgaaagttatcttcatacccgataaggagtgccagaagccggaccttatcgctacctctagtgattatctcaggatttggcgagtctccaatgataatagtcgggttgacatgaagagtcttcttaataacaaccggaacagtgagttttccggtccgttaacctcatttgactggaatgaagctgagccgaggcggattggtacgtcgagtattgatactacctgtactatatgggatattgagagggagactgtcgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="84340" stop="85483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84640" g_stop="85183" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E302342" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84640" e_stop="85183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACC</genome_strand>
        <mrna_strand>GCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGGGATGCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709043" ref_strand="+" ref_description="SGN-E709043 [FA42CB05]">
      <seq>cgcttgatccgaaccagcaagatggttccgacgaacagcagagacgctccgagatctacacctacgaggctccatggcacatatacgctatgaattggagtgttcgcaaggataagaagtatcgtctcgccattgctagcttgctcgagcagtaccaaaaccgagttgagattgtgcagcttgatgactctaatggtgagattcggtccgacccgaaactctcatttgagcacccgtatccgcctacgaaagttatcttcatacccgataaggagtgccagaagccggaccttatcgctacctctagtgattatctcaggatttggcgagtctccaatgataatagtcgggttgacatgaagagtcttcttaataacaaccggaacagtgagttttccggtccgttaacctcatttgactggaatgaagctgagccgaggcggattggtacgtcgagtattgatactacctgtactatatgggatattgagagggagactgtcgatacccagttaattgctcatgataaggaggtttatgatattgcttggggtggggttggagtttttgcttctgtttcagctgatgggtctgttagggtttttgatcttcgtgataaggagcactctacgataatctatgagagttctgagcctgatactcctcttgtacgccttggatggaacaagcaggatcctaggtatatggccaccataataatggacagtgcaaaggttgtagttttggacatccgtttcccgacactgccggtggtggaactacagaggcaccaggctagtgtgaatgccattgcctgggctcctcacagctcttgccatatttgtactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="84379" stop="85826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84674" g_stop="85526" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E709043" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84674" e_stop="85526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTG</genome_strand>
        <mrna_strand>CGC-TTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731054" ref_strand="+" ref_description="SGN-E731054 [LA26AA09]">
      <seq>gaggctccatggcacatatacgctatgaattggagtgttcgcaaggataagaagtatcgtctcgccattgctagcttgctcgagcagtaccaaaaccgagttgagattgtgcagcttgatgactctaatggtgagattcggtccgacccgaaactctcatttgagcacccgtatccgcctacgaaagttatcttcatacccgataaggagtgccagaagccggaccttatcgctacctctagtgattatctcaggatttggcgagtctccaatgataatagtcgggttgacatgaagagtcttcttaataacaaccggaacagtgagttttccggtccgttaacctcatttgactggaatgaagctgagccgaggcggattggtacgtcgagtattgatactacctgtactatatgggatattgagagggagactgtcgatacccagttaattgctcatgataaggaggtttatgatattgcttggggtggggttggagtttttgcttctgtttcagctgatgggtctgttagggtttttgatcttcgtgataaggagcactctacgataatctatgagagttctgagcctgatactcctcttgtacgccttggatgggacaagcaggatcctaggtatatggccaccataataatggacagtgncaaaggttgtagttttgggacatccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="84440" stop="85730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84740" g_stop="85430" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E731054" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84740" e_stop="85430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTG-CAAAGGTTGTAGTTTT-GGACATCCGTT</genome_strand>
        <mrna_strand>GAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGGACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGNCAAAGGTTGTAGTTTTGGGACATCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548800" ref_strand="+" ref_description="SGN-E548800 [TUS-64-I14](-)">
      <seq>gtttatgatattgctgggggtggggttggagtttttgcttctgtttcagctgatgggtctgttagggtttttgatcttcgtgataaggagcactctacgataatctatgagagttctgagcctgatactcctcttgtacgccttggatggaacaagcaggatcctaggtatatggccaccataataatggacagtgcaaaggttgtagttttggacatccgtttcccgacactgccggtggtggaactacagaggcaccaggctagtgtgaatgccattgcctgggctcctcacagctcttgccatatttgtactgctggtgacgactcacaggcgcttatctgggatctctcttcaatgggtcagccaatagaaggtggattggatccaattctggcttatactgcaggtgcagaaatcgagcagcttcagtggtcctcatcccagcctgattgggttgccattgcattctccaacaagcttcagattctaagggtgtgaattagctattctcgctcgcacttcaagcagctgctcaagtatcatcttattcagtcttcctgctagcgacatttctccaagtaaaaattttcctttttttggcattttattcccaaaatgaaaaacgaggcttattactgacaatagttaaacctgaatagcttttgctatctttgcacctagggctctattatcatagaagtaactggaatccacattgtctgtgggattcagttagtcagcattattgtggttggtctgcaacatctgtagcttgtattatgtttattgaaaaccgcaattgggagtaatcaaattcatatgtgttttgatgttcctgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="84908" stop="86351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85208" g_stop="86050" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E548800" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85208" e_stop="86050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATT-GGAGTAATCAAA-TCATATGTGTTTTGATGTTCCTGAGAG</genome_strand>
        <mrna_strand>GTTTATGATATTGCTGGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATTGGGAGTAATCAAATTCATATGTGTTTTGATGTTCCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342680" ref_strand="+" ref_description="SGN-E342680 [cTOF-7-D16]">
      <seq>gtatatggccaccataataatggacagtgcaaaggttgtagttttggacatccgtttcccgacactgccggtggtggaactacagaggcaccaggctagtgtgaatgccattgcctgggctcctcacagctcttgccatatttgtactgctggtgacgactcacaggcgcttatctgggatctctcttcaatgggtcagccaatagaaggtggattggatccaattctggcttatactgcaggtgcagaaatcgagcagcttcagtggtcctcatcccagcctgattgggttgccattgcattctccaacaagcttcagattctaagggtgtgaattagctattctcgctcgcacttcaagcagctgctcaagtatcatcttattcagtcttcctgctagcgacatttctccaagtaaaaattttcctttttttggcattttattcccaaaatgaaaaacgaggcttattactgacaatagttaaacctgaatagcttttgctatctttgcacctagggctctattatcatagaagtaactggaatccacattgtctgtgggattcagttagtcagcattattgtggttggtctgcaacatctgtagcttgtattatgtttattgaaaaccgcnattggagtaatcaaatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="85075" stop="86329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85375" g_stop="86029" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E342680" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85375" e_stop="86029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATTGGAGTAATCAAATCATAT</genome_strand>
        <mrna_strand>GTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCNATTGGAGTAATCAAATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242198" ref_strand="+" ref_description="SGN-E242198 [cLED-37-O1]">
      <seq>tggatccttcatgatctaatttttaagattcgggttatggatttatgtatggatacgattgcgggggttcacctaaaaatgattagaatgtctaaaataagttataaaacctaaattatgagatattatgaagagaatctcatattgagattaaaggaaaaggagtgacaaagaaatttatatataaaaggtattctattttcttcaatttcaacttagattttgcattgattattgaaattattaaaactatcctgactttccccgtcgattttgctcaaagcaccctaaatcggttgaccaaattggacacagatcccacacccacactcatgtcgtgttgacatgggtgcggcaccataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="86921" stop="87885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87221" g_stop="87585" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-E242198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87221" e_stop="87585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCCTTCATGATCTAATTTTTAAGATTCGGGTTATGGATTTATGTATGGATACGATTGCGGGGGTTCACCTAAAAATGATTAGAATGTCTAAAATAAGTTATAAAACCTAAATTATGAGATATTATGAAGAGAATCTCATATTGAGATTAAAGGAAAAGGAGTGACAAAGAAATTTATATATAAAAGGTATTCTATTTTCTTCAATTTCAACTTAGATTTTGCATTGATTATTGAAATTATTAAAACTATCCTGACTTTCCCCGTCGATTTTGCTCAAAGCACCCTAAATCGGTTGACCAAATTGGACACAGATCCCACACCCACACTCATGTCGTGTTGACATGGGTGCGGCACCATAAGT</genome_strand>
        <mrna_strand>TGGATCCTTCATGATCTAATTTTTAAGATTCGGGTTATGGATTTATGTATGGATACGATTGCGGGGGTTCACCTAAAAATGATTAGAATGTCTAAAATAAGTTATAAAACCTAAATTATGAGATATTATGAAGAGAATCTCATATTGAGATTAAAGGAAAAGGAGTGACAAAGAAATTTATATATAAAAGGTATTCTATTTTCTTCAATTTCAACTTAGATTTTGCATTGATTATTGAAATTATTAAAACTATCCTGACTTTCCCCGTCGATTTTGCTCAAAGCACCCTAAATCGGTTGACCAAATTGGACACAGATCCCACACCCACACTCATGTCGTGTTGACATGGGTGCGGCACCATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>123</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="408" PGL_stop="910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="408" e_stop="910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="408" e_stop="910" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="408" stop="910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306603" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</gDNA_template>
            <first_frame> T  S  V  T  E  T  S  A  P  E  L  A  K  L  L  Y  W  L  M  V  V  G  Y  S  I  R  N  I  E  V  R  F  D  M  E  R  V  L  G  T  S  P  K  L  A  E  L  P  P  G  E  N  I  *  A  S  L  E  S  V  *  S  I  A  S  I  K  T  L  K  Q  H  T  F  F  M  S  F  T  M  V  N  S  K  I  L  S  S  L  Y  D  Y  L  G  G  Q  Q  W  K  L  V  L  V  H  F  L  H  S  L  P  A  P  L  P  L  L  F  S  V  W  E  H  H  *  D  A  H  T  K  E  M  Y  Y  K  L  M  H  N  V  T  Y  V  S  *  F  D  S  L  P  S  K  M  Y  L  S  V  Y  G  N  E  K  F  C  G  L  D  L   </first_frame>
            <second_frame>  L  V  *  Q  R  Q  V  P  Q  N  L  P  N  F  F  I  G  S  W  W  L  V  I  A  S  G  I  L  K  S  A  L  I  W  N  G  Y  *  A  L  L  Q  S  S  L  S  C  L  L  V  K  I  F  R  H  L  W  K  V  S  N  L  *  Q  A  L  K  R  *  S  N  I  H  F  S  *  A  L  R  W  S  I  V  K  F  Y  Q  A  C  T  T  I  W  E  D  N  S  G  N  W  F  *  C  I  F  F  T  H  S  Q  P  R  S  P  Y  Y  S  Q  F  G  S  I  I  K  T  L  I  Q  R  K  C  T  I  N  *  C  T  M  *  L  M  *  V  N  L  I  H  C  P  L  K  C  T  S  L  F  M  G  M  R  N  F  V  A  *  I  S  </second_frame>
            <third_frame>   *  C  N  R  D  K  C  P  R  T  C  Q  T  S  L  L  A  H  G  G  W  L  *  H  P  E  Y  *  S  P  L  *  Y  G  T  G  T  R  H  F  S  K  A  R  *  A  A  S  W  *  K  Y  L  G  I  S  G  K  C  L  I  Y  S  K  H  *  N  V  E  A  T  Y  I  F  H  E  L  Y  D  G  Q  *  *  N  F  I  K  L  V  R  L  S  G  R  T  T  V  E  I  G  F  S  A  F  S  S  L  T  P  S  P  A  P  P  I  I  L  S  L  G  A  S  L  R  R  S  Y  K  G  N  V  L  *  I  D  A  Q  C  N  L  C  E  L  I  *  F  I  A  L  *  N  V  P  L  C  L  W  E  *  E  I  L  W  L  R  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0106F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2236" PGL_stop="1539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2236" e_stop="2169"/>
            <exon e_start="2060" e_stop="1539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2236" e_stop="2169" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="2168" i_stop="2061" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2060" e_stop="1539" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2236" stop="2169"/>
              <exon start="2060" stop="1539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATATTAGAAGGGATCCAGCTTGATGTACTTCTATATAACACCATTTTTCAAGTGGCAGCTGAGAAG : GGAAGAATAGATGTCATCGAACTCATTGTTGAGCACATGCACCTCCAAGGGGTTCTCCCAGATCCATCAACATGCAGTCATGTTTTCGCTGCATATGTAGACCATGGATTCTATAACACTGCCATGGAAGCTTTGCAAGTTTTGAGTGTGCGAATGATTGTTGAGGTTGAGAAAGATACAGATGAAAAACGAACTGAACTTGAAAATCTAATTCTTGGTGAAGACTCGGAAGATGAGCCCCAGATTCTTAAGACTTTTAAAGACTCGAAAGAATATCTTACTGTTGCCTTACTGCAATTAAGATGGTGCGCCATACTTGGATATCCAGTATCTTGGTCACCTTCAGACAGTCAATGGGCCAGGAGACTTTCAAGTAATTTTGCTTCAACAAACGGTCTTCTGTGAAGGTTTCATGTTTCCACAGGTGTGTGGACTCTTTTGATCTTGCATATCACCTGGTATGTCAATTCTCAGTTCTGATACGCTAACTCGTGATATATTAATGATCGGAATGGGTTAATG</gDNA_template>
            <first_frame> E  Y  *  K  G  S  S  L  M  Y  F  Y  I  T  P  F  F  K  W  Q  L  R  R :   E  E  *  M  S  S  N  S  L  L  S  T  C  T  S  K  G  F  S  Q  I  H  Q  H  A  V  M  F  S  L  H  M  *  T  M  D  S  I  T  L  P  W  K  L  C  K  F  *  V  C  E  *  L  L  R  L  R  K  I  Q  M  K  N  E  L  N  L  K  I  *  F  L  V  K  T  R  K  M  S  P  R  F  L  R  L  L  K  T  R  K  N  I  L  L  L  P  Y  C  N  *  D  G  A  P  Y  L  D  I  Q  Y  L  G  H  L  Q  T  V  N  G  P  G  D  F  Q  V  I  L  L  Q  Q  T  V  F  C  E  G  F  M  F  P  Q  V  C  G  L  F  *  S  C  I  S  P  G  M  S  I  L  S  S  D  T  L  T  R  D  I  L  M  I  G  M  G  *   </first_frame>
            <second_frame>  N  I  R  R  D  P  A  *  C  T  S  I  *  H  H  F  S  S  G  S  *  E   : G  K  N  R  C  H  R  T  H  C  *  A  H  A  P  P  R  G  S  P  R  S  I  N  M  Q  S  C  F  R  C  I  C  R  P  W  I  L  *  H  C  H  G  S  F  A  S  F  E  C  A  N  D  C  *  G  *  E  R  Y  R  *  K  T  N  *  T  *  K  S  N  S  W  *  R  L  G  R  *  A  P  D  S  *  D  F  *  R  L  E  R  I  S  Y  C  C  L  T  A  I  K  M  V  R  H  T  W  I  S  S  I  L  V  T  F  R  Q  S  M  G  Q  E  T  F  K  *  F  C  F  N  K  R  S  S  V  K  V  S  C  F  H  R  C  V  D  S  F  D  L  A  Y  H  L  V  C  Q  F  S  V  L  I  R  *  L  V  I  Y  *  *  S  E  W  V  N  </second_frame>
            <third_frame>   I  L  E  G  I  Q  L  D  V  L  L  Y  N  T  I  F  Q  V  A  A  E  K  :  G  R  I  D  V  I  E  L  I  V  E  H  M  H  L  Q  G  V  L  P  D  P  S  T  C  S  H  V  F  A  A  Y  V  D  H  G  F  Y  N  T  A  M  E  A  L  Q  V  L  S  V  R  M  I  V  E  V  E  K  D  T  D  E  K  R  T  E  L  E  N  L  I  L  G  E  D  S  E  D  E  P  Q  I  L  K  T  F  K  D  S  K  E  Y  L  T  V  A  L  L  Q  L  R  W  C  A  I  L  G  Y  P  V  S  W  S  P  S  D  S  Q  W  A  R  R  L  S  S  N  F  A  S  T  N  G  L  L  *  R  F  H  V  S  T  G  V  W  T  L  L  I  L  H  I  T  W  Y  V  N  S  Q  F  *  Y  A  N  S  *  Y  I  N  D  R  N  G  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2234" stop="2169"/>
                    <exon start="2060" stop="1656"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEGIQLDVLLYNTIFQVAAEKGRIDVIELIVEHMHLQGVLPDPSTCSHVFAAYVDHGFYNTAMEALQVLSVRMIVEVEKDTDEKRTELENLILGEDSEDEPQILKTFKDSKEYLTVALLQLRWCAILGYPVSWSPSDSQWARRLSSNFASTNGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6740" PGL_stop="2256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6740" e_stop="6625"/>
            <exon e_start="6394" e_stop="6299"/>
            <exon e_start="6193" e_stop="6020"/>
            <exon e_start="5478" e_stop="5251"/>
            <exon e_start="3315" e_stop="3172"/>
            <exon e_start="3078" e_stop="2890"/>
            <exon e_start="2288" e_stop="2256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.910" acc_prob="0.564" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.864" acc_prob="0.995" e_score="0.977"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6740" e_stop="6625" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.910" acc_prob="0.564">
            <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="6394" e_stop="6299" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="6193" e_stop="6020" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="5478" e_stop="5251" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5250" i_stop="3316" i_length="1935"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3315" e_stop="3172" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="3171" i_stop="3079" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3078" e_stop="2890" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.962">
            <gDNA_intron_boundary i_start="2889" i_stop="2289" i_length="601"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2288" e_stop="2256" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6740" stop="6625"/>
              <exon start="6394" stop="6299"/>
              <exon start="6193" stop="6020"/>
              <exon start="5478" stop="5266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5384" stop="5251"/>
              <exon start="3315" stop="3172"/>
              <exon start="3078" stop="2890"/>
              <exon start="2288" stop="2256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG : ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTG : CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG : GATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTG : TTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAG : AGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAG : ATATTGTTGAGATCTGAGGACTTTGATGGAGCA</gDNA_template>
            <first_frame> A  E  K  H  *  V  H  L  L  *  S  F  *  G  G  P  S  M  M  L  C  M  L  V  H  K  F  K  I  V  I  W  L  N  S  *  C  Y  R :   C  K  L  L  V  C  N  H  Q  G  V  H  M  M  A  S  L  G  Q  L  L  P  Q  E  A  L  V  T  G  W  K  C :   *  R  L  *  K  R  K  I  L  S  L  M  I  Q  L  L  L  F  *  Q  S  C  A  A  E  S  W  N  S  I  *  Q  R  L  S  W  M  R  C  P  K  S  I  I  L  V  L  I  M  L  F  L  K  H  V  M  F  W :   I  G  P  N  E  Q  F  K  Y  W  L  R  *  K  G  *  I  F  S  Q  I  S  G  H  M  S  C  Y  S  H  C  L  V  M  *  M  H  L  M  K  R  A  T  C  C  H  K  W  M  L  L  K  G  *  M  L  *  K  W  T  *  *  G  M  A  F  R  T  V  I  C  R  *  G  M  C :   *  K  R  L  E  Q  K  G  W  *  R  S  *  F  N  I  Y  V  L  Q  R  I  G  F  L  V  M  T  P  I  *  *  H  L  S  I  I  Q  L  Y  T  P  L  L  R  L  K  R :   V  K  W  Q  H  R  Y  S  N  Q  W  C  L  L  V  L  H  L  M  L  Q  H  I  I  S  *  L  T  A  V  A  L  L  D  V  S  D  L  H  L  P  *  S  L  *  C  S  A  L  V  S  T  L  K  Q  *  L  *  L  A  C  *  R :   Y  C  *  D  L  R  T  L  M  E   </first_frame>
            <second_frame>  Q  K  N  I  K  C  I  C  C  E  A  F  E  V  V  L  Q  *  C  Y  A  C  L  C  T  S  S  K  L  *  F  G  *  T  V  D  V  T   : D  A  N  S  W  F  A  T  I  R  E  Y  I  *  W  L  H  *  G  N  C  Y  H  K  R  L  *  *  R  G  G  S   : A  K  G  Y  E  R  E  K  Y  *  A  S  *  F  N  S  C  C  F  S  S  H  V  Q  Q  R  V  G  T  Q  S  S  R  G  F  L  G  *  D  V  Q  N  P  *  S  S  S  L  *  C  F  S  *  S  M  *  C  S   : G  S  A  R  T  S  S  S  N  I  G  *  D  E  K  V  E  S  S  A  K  Y  Q  D  I  *  V  A  I  L  T  V  W  *  C  K  C  T  L  *  R  G  Q  H  A  V  T  S  G  C  C  *  K  D  K  C  Y  R  N  G  H  D  E  E  W  H  S  A  Q  S  S  V  V  E  E  C   : V  E  S  A  W  N  R  R  D  G  K  G  A  D  S  I  F  T  C  C  R  E  S  V  F  S  L  *  H  L  Y  D  N  T  C  L  *  Y  S  F  T  L  P  Y  *  G  *  R   : E  *  S  G  N  T  D  I  Q  I  N  G  V  F  W  C  Y  T  *  C  C  N  I  *  Y  H  D  *  R  L  *  H  C  W  M  F  Q  I  C  T  Y  P  D  L  Y  D  V  P  H  W  F  Q  P  S  S  S  D  F  N  W  P  V  K   : D  I  V  E  I  *  G  L  *  W  S  </second_frame>
            <third_frame>   R  K  T  L  S  A  S  V  V  K  L  L  R  W  S  F  N  D  V  M  H  A  C  A  Q  V  Q  N  C  D  L  A  E  Q  L  M  L  Q  :  M  Q  T  L  G  L  Q  P  S  G  S  T  Y  D  G  F  I  R  A  I  A  T  T  R  G  F  S  D  G  V  E  V  :  L  K  V  M  K  E  K  N  I  K  P  H  D  S  T  L  A  V  L  A  V  M  C  S  R  E  L  E  L  N  L  A  E  A  F  L  D  E  M  S  K  I  H  N  P  R  P  Y  N  A  F  L  E  A  C  D  V  L  :  D  R  P  E  R  A  V  Q  I  L  A  K  M  K  R  L  N  L  Q  P  N  I  R  T  Y  E  L  L  F  S  L  F  G  N  V  N  A  P  Y  E  E  G  N  M  L  S  Q  V  D  V  A  K  R  I  N  A  I  E  M  D  M  M  R  N  G  I  P  H  S  H  L  S  L  R  N  V  :  L  K  A  L  G  T  E  G  M  V  K  E  L  I  Q  Y  L  R  A  A  E  N  R  F  S  R  Y  D  T  Y  M  I  T  P  V  Y  N  T  A  L  H  S  L  I  E  A  K  E  :  S  K  V  A  T  Q  I  F  K  S  M  V  S  S  G  V  T  P  D  A  A  T  Y  N  I  M  I  D  G  C  S  I  V  G  C  F  R  S  A  L  T  L  I  S  M  M  F  R  T  G  F  N  P  Q  A  V  T  L  T  G  L  L  K  :  I  L  L  R  S  E  D  F  D  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6738" stop="6625"/>
                    <exon start="6394" stop="6299"/>
                    <exon start="6193" stop="6020"/>
                    <exon start="5478" stop="5251"/>
                    <exon start="3315" stop="3172"/>
                    <exon start="3078" stop="2890"/>
                    <exon start="2288" stop="2256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKTLSASVVKLLRWSFNDVMHACAQVQNCDLAEQLMLQMQTLGLQPSGSTYDGFIRAIATTRGFSDGVEVLKVMKEKNIKPHDSTLAVLAVMCSRELELNLAEAFLDEMSKIHNPRPYNAFLEACDVLDRPERAVQILAKMKRLNLQPNIRTYELLFSLFGNVNAPYEEGNMLSQVDVAKRINAIEMDMMRNGIPHSHLSLRNVLKALGTEGMVKELIQYLRAAENRFSRYDTYMITPVYNTALHSLIEAKESKVATQIFKSMVSSGVTPDAATYNIMIDGCSIVGCFRSALTLISMMFRTGFNPQAVTLTGLLKILLRSEDFDGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="10140" PGL_stop="7960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10140" e_stop="9942"/>
            <exon e_start="9853" e_stop="9793"/>
            <exon e_start="9638" e_stop="9581"/>
            <exon e_start="9316" e_stop="9138"/>
            <exon e_start="8824" e_stop="8717"/>
            <exon e_start="8133" e_stop="7960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.227" acc_prob="0.858" e_score="0.980"/>
          <exon-intron don_prob="0.394" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="10140" e_stop="9942" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.227" acc_prob="0.858">
            <gDNA_intron_boundary i_start="9941" i_stop="9854" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9853" e_stop="9793" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.394" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9792" i_stop="9639" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9638" e_stop="9581" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="9580" i_stop="9317" i_length="264"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9316" e_stop="9138" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.963">
            <gDNA_intron_boundary i_start="9137" i_stop="8825" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8824" e_stop="8717" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8716" i_stop="8134" i_length="583"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="8133" e_stop="7960" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10140" stop="9942"/>
              <exon start="9853" stop="9793"/>
              <exon start="9638" stop="9581"/>
              <exon start="9316" stop="9138"/>
              <exon start="8824" stop="8717"/>
              <exon start="8133" stop="7960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGAAAGCAAAAAACCAGAGTCGCCGGAAACACTGTCCTCGCGGGCGGGCCTAGCTGTAGTCGCAGTGGTCGGACTGATTACAATTTCCGGACTAACCGTTCTGGAAAATTTCTTCGTGCTGCTAGTACTATGAACTCATCGAACCGAAAGTTTTAAGTTATTTCACAGGAAGCATTGAGAAGATGCCTAAACTTAT : ATCAAAGGTTCGTGCCAGTTCGATATTGCAAAGATTTTCAAAATTAAATGCTATTCGAAAT : GGAGGAAAGGAAGCTGGAGGCTACAGCCAAGCTATGAGAACTCTTACTACCTCAAATG : GGCATGTCGGGGAGCCGGTTTCAAGATTAGGGCAAAAACAAATTGTCGATGCACTTGTCTTGGGAGAGAGAAGAAGAGCTGTTAGTCTCCTGTATGAGTTTAGTCTTGGAAACAACAAATTGAGTGCTGATGATTTTGCTTCTATACTGCAAAGTTGTGCAAGACTGCCTGATCCATTA : TTTGTGATGGAAACTTGGAAGATCATGGAGGAGAAGGAAATCAACATTAGTGACAAGTGTTATGCTCTTGCCGTTCGAGCACTCTGTAAAGGGGGTTACTTAAAGGAG : GCACTCAGTTTGATGAGTATCATGGCAGAAAACACAAATTGTTATTCTATGTTGCCAATTTATAACAACTTCCTAGCTGCTTGTTATGAAACACAAACAATAGATTATGCTAATGAATGTATGGATTTGATGGAGCATCAGATGGTGGGAAAGAATGAGATAACATATGCTCAG</gDNA_template>
            <first_frame> Q  R  K  Q  K  T  R  V  A  G  N  T  V  L  A  G  G  P  S  C  S  R  S  G  R  T  D  Y  N  F  R  T  N  R  S  G  K  F  L  R  A  A  S  T  M  N  S  S  N  R  K  F  *  V  I  S  Q  E  A  L  R  R  C  L  N  L   : Y  Q  R  F  V  P  V  R  Y  C  K  D  F  Q  N  *  M  L  F  E  M :   E  E  R  K  L  E  A  T  A  K  L  *  E  L  L  L  P  Q  M  :  G  M  S  G  S  R  F  Q  D  *  G  K  N  K  L  S  M  H  L  S  W  E  R  E  E  E  L  L  V  S  C  M  S  L  V  L  E  T  T  N  *  V  L  M  I  L  L  L  Y  C  K  V  V  Q  D  C  L  I  H  Y :   L  *  W  K  L  G  R  S  W  R  R  R  K  S  T  L  V  T  S  V  M  L  L  P  F  E  H  S  V  K  G  V  T  *  R  R :   H  S  V  *  *  V  S  W  Q  K  T  Q  I  V  I  L  C  C  Q  F  I  T  T  S  *  L  L  V  M  K  H  K  Q  *  I  M  L  M  N  V  W  I  *  W  S  I  R  W  W  E  R  M  R  *  H  M  L   </first_frame>
            <second_frame>  R  E  S  K  K  P  E  S  P  E  T  L  S  S  R  A  G  L  A  V  V  A  V  V  G  L  I  T  I  S  G  L  T  V  L  E  N  F  F  V  L  L  V  L  *  T  H  R  T  E  S  F  K  L  F  H  R  K  H  *  E  D  A  *  T  Y  :  I  K  G  S  C  Q  F  D  I  A  K  I  F  K  I  K  C  Y  S  K   : W  R  K  G  S  W  R  L  Q  P  S  Y  E  N  S  Y  Y  L  K  W :   A  C  R  G  A  G  F  K  I  R  A  K  T  N  C  R  C  T  C  L  G  R  E  K  K  S  C  *  S  P  V  *  V  *  S  W  K  Q  Q  I  E  C  *  *  F  C  F  Y  T  A  K  L  C  K  T  A  *  S  I   : I  C  D  G  N  L  E  D  H  G  G  E  G  N  Q  H  *  *  Q  V  L  C  S  C  R  S  S  T  L  *  R  G  L  L  K  G   : G  T  Q  F  D  E  Y  H  G  R  K  H  K  L  L  F  Y  V  A  N  L  *  Q  L  P  S  C  L  L  *  N  T  N  N  R  L  C  *  *  M  Y  G  F  D  G  A  S  D  G  G  K  E  *  D  N  I  C  S  </second_frame>
            <third_frame>   E  K  A  K  N  Q  S  R  R  K  H  C  P  R  G  R  A  *  L  *  S  Q  W  S  D  *  L  Q  F  P  D  *  P  F  W  K  I  S  S  C  C  *  Y  Y  E  L  I  E  P  K  V  L  S  Y  F  T  G  S  I  E  K  M  P  K  L  I :   S  K  V  R  A  S  S  I  L  Q  R  F  S  K  L  N  A  I  R  N  :  G  G  K  E  A  G  G  Y  S  Q  A  M  R  T  L  T  T  S  N   : G  H  V  G  E  P  V  S  R  L  G  Q  K  Q  I  V  D  A  L  V  L  G  E  R  R  R  A  V  S  L  L  Y  E  F  S  L  G  N  N  K  L  S  A  D  D  F  A  S  I  L  Q  S  C  A  R  L  P  D  P  L  :  F  V  M  E  T  W  K  I  M  E  E  K  E  I  N  I  S  D  K  C  Y  A  L  A  V  R  A  L  C  K  G  G  Y  L  K  E  :  A  L  S  L  M  S  I  M  A  E  N  T  N  C  Y  S  M  L  P  I  Y  N  N  F  L  A  A  C  Y  E  T  Q  T  I  D  Y  A  N  E  C  M  D  L  M  E  H  Q  M  V  G  K  N  E  I  T  Y  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10012" stop="9942"/>
                    <exon start="9853" stop="9793"/>
                    <exon start="9638" stop="9581"/>
                    <exon start="9316" stop="9138"/>
                    <exon start="8824" stop="8717"/>
                    <exon start="8133" stop="7960"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYELIEPKVLSYFTGSIEKMPKLISKVRASSILQRFSKLNAIRNGGKEAGGYSQAMRTLTTSNGHVGEPVSRLGQKQIVDALVLGERRRAVSLLYEFSLGNNKLSADDFASILQSCARLPDPLFVMETWKIMEEKEINISDKCYALAVRALCKGGYLKEALSLMSIMAENTNCYSMLPIYNNFLAACYETQTIDYANECMDLMEHQMVGKNEITYAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="14136" PGL_stop="11217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14136" e_stop="14125"/>
            <exon e_start="14038" e_stop="13782"/>
            <exon e_start="13572" e_stop="13486"/>
            <exon e_start="13390" e_stop="13160"/>
            <exon e_start="12535" e_stop="12457"/>
            <exon e_start="12376" e_stop="12313"/>
            <exon e_start="11644" e_stop="11217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.985" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14136" e_stop="14125" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14124" i_stop="14039" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="14038" e_stop="13782" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13572" e_stop="13486" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.655">
            <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13390" e_stop="13160" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.984">
            <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12535" e_stop="12457" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12376" e_stop="12313" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="11644" e_stop="11217" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14136" stop="14125"/>
              <exon start="14038" stop="13782"/>
              <exon start="13572" stop="13505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13801" stop="13782"/>
              <exon start="13572" stop="13486"/>
              <exon start="13390" stop="13160"/>
              <exon start="12535" stop="12457"/>
              <exon start="12376" stop="12313"/>
              <exon start="11644" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13801" stop="13782"/>
              <exon start="13572" stop="13486"/>
              <exon start="13390" stop="13161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13800" stop="13782"/>
              <exon start="13572" stop="13486"/>
              <exon start="13390" stop="13312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13502" stop="13486"/>
              <exon start="13390" stop="13160"/>
              <exon start="12535" stop="12457"/>
              <exon start="12376" stop="12313"/>
              <exon start="11644" stop="11244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13499" stop="13486"/>
              <exon start="13390" stop="13160"/>
              <exon start="12535" stop="12457"/>
              <exon start="12376" stop="12313"/>
              <exon start="11644" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGACCCAAAA : GAATCTCTACCTCAAGAGTATGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAG : CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG : GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG : TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG : CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG : GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCTAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTTTTTGAATCGTTAACAAATTTTATAGCA</gDNA_template>
            <first_frame> W  D  P  K  :  E  S  L  P  Q  E  Y  A  R  I  F  A  F  D  N  F  N  R  T  Q  K  H  V  L  S  R  A  R  E  M  E  Q  N  V  D  E  C  I  P  A  G  S  Y  A  R  L  H  I  R  E  V  P  N  G  V  A  N  K  L  N  L  V  T  K  T  M  P  V  I  L  C  G  L  M  Q  H  E  S  K  I  S  V  L  H  F  S :   L  K  K  H  D  S  Y  T  D  P  I  K  S  K  E  E  M  I  F  N  L  G  F  R  Q  F  V  A  R :   P  I  F  S  S  D  S  F  N  A  D  K  Q  K  M  E  R  F  L  H  P  G  R  F  S  V  A  S  V  Y  A  P  I  S  F  P  P  L  P  L  I  A  L  K  I  K  D  D  A  T  P  A  T  V  A  A  I  G  S  L  R  S  I  D  P  D  R  I  I  L  K  K  I  I  L  T  G :   Y  P  Q  R  V  S  K  Q  K  A  T  V  R  Y  M  F  H  N  P  E  D  V  R  W  F  K  :  P  V  E  V  W  S  K  C  G  R  R  G  R  I  K  E  P  V  G  T  H   : G  A  M  K  C  I  L  N  G  V  L  Q  Q  H  D  T  L  C  M  S  L  F  K  R  T  Y  P  R  W  P  E  K  W  F  P  M  T  D  A  *  E  K  G  L  V  V  A  Q  V  Y  G  F  S  Q  V  *  R  E  K  K  S  H  L  L  H  M  G  M  K  L  W  F  R  M  S  Y  Y  S  S  F  V  R  G  K  F  F  T  L  F  T  F  L  S  P  Q  R  F  L  Q  K  P  V  Y  S  V  *  Y  M  V  A  H  F  F  V  P  Q  H  N  L  V  S  L  I  N  *  F  L  T  A  Q  *  F  F  F  F  E  S  L  T  N  F  I  A </first_frame>
            <second_frame>  G  T  Q  K :   N  L  Y  L  K  S  M  L  E  Y  L  H  L  T  I  L  I  G  R  K  S  M  Y  C  L  E  P  E  R  W  N  R  T  L  M  N  V  Y  Q  L  V  H  M  Q  G  S  I  S  G  K  F  Q  M  V  W  Q  T  S  *  I  L  *  R  R  Q  C  L  *  S  C  V  V  *  C  S  M  S  L  K  F  L  S  F  T  S   : A  *  K  S  T  T  V  T  L  I  Q  *  N  L  K  K  R  *  Y  S  I  L  G  F  A  S  L  L  Q   : G  P  Y  F  L  P  I  V  L  T  L  I  S  K  K  W  R  D  F  S  I  P  G  V  F  Q  *  L  Q  Y  M  L  L  F  H  F  L  P  F  L  *  L  P  *  R  L  K  T  M  Q  L  L  P  L  L  L  P  L  A  L  *  E  V  L  T  Q  I  G  L  F  *  R  K  L  F  *  P   : V  T  L  N  E  Y  Q  N  R  K  R  R  *  D  T  C  F  I  T  Q  R  M  S  D  G  S  S :   L  L  K  F  G  Q  S  V  V  V  V  V  A  S  R  N  L  L  V  H  M  :  G  Q  *  S  A  S  *  M  E  S  S  N  S  M  T  R  Y  A  *  V  C  L  N  A  H  T  P  G  G  R  K  S  G  S  R  *  Q  M  L  K  R  K  V  *  W  W  P  R  F  M  V  S  P  K  C  E  G  R  R  N  H  I  C  C  T  W  E  *  S  S  G  S  E  *  V  T  I  Q  V  L  Y  E  G  N  F  L  L  C  L  L  F  F  L  P  K  G  F  F  R  N  Q  F  I  V  Y  N  I  W  *  L  I  F  S  C  H  N  T  I  L  Y  H  L  *  I  S  S  *  P  H  N  D  F  F  F  L  N  R  *  Q  I  L  *   </second_frame>
            <third_frame>   G  P  K   : R  I  S  T  S  R  V  C  *  N  I  C  I  *  Q  F  *  *  D  A  K  A  C  T  V  *  S  P  R  D  G  T  E  R  *  *  M  Y  T  S  W  F  I  C  K  A  P  Y  P  G  S  S  K  W  C  G  K  Q  V  K  S  C  N  E  D  N  A  C  D  P  V  W  S  D  A  A  *  V  *  N  F  C  P  S  L  Q  :  L  K  K  A  R  Q  L  H  *  S  N  K  I  *  R  R  D  D  I  Q  S  W  V  S  P  V  C  C  K  :  A  H  I  F  F  R  *  F  *  R  *  *  A  K  N  G  E  I  S  P  S  R  A  F  F  S  S  F  S  I  C  S  Y  F  I  S  S  P  S  F  N  C  P  E  D  *  R  R  C  N  S  C  H  C  C  C  H  W  L  F  E  K  Y  *  P  R  *  D  Y  S  K  E  N  Y  F  N  R  :  L  P  S  T  S  I  K  T  E  S  D  G  K  I  H  V  S  *  P  R  G  C  Q  M  V  Q   : A  C  *  S  L  V  K  V  W  S  S  W  S  H  Q  G  T  C  W  Y  T  W :   G  N  E  V  H  L  E  W  S  P  P  T  A  *  H  V  M  H  E  F  V  *  T  H  I  P  Q  V  A  G  K  V  V  P  D  D  R  C  L  R  E  R  S  S  G  G  P  G  L  W  F  L  P  S  V  K  G  E  E  I  T  F  A  A  H  G  N  E  A  L  V  Q  N  E  L  L  F  K  F  C  T  R  E  I  F  Y  F  V  Y  F  S  F  S  P  K  V  S  S  E  T  S  L  *  C  I  I  Y  G  S  S  F  F  R  A  T  T  Q  S  C  I  T  Y  K  L  V  P  N  R  T  M  I  F  F  F  *  I  V  N  K  F  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14136" stop="14125"/>
                    <exon start="14038" stop="13782"/>
                    <exon start="13572" stop="13486"/>
                    <exon start="13390" stop="13160"/>
                    <exon start="12535" stop="12457"/>
                    <exon start="12376" stop="12313"/>
                    <exon start="11644" stop="11526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDPKESLPQEYARIFAFDNFNRTQKHVLSRAREMEQNVDECIPAGSYARLHIREVPNGVANKLNLVTKTMPVILCGLMQHESKISVLHFSLKKHDSYTDPIKSKEEMIFNLGFRQFVARPIFSSDSFNADKQKMERFLHPGRFSVASVYAPISFPPLPLIALKIKDDATPATVAAIGSLRSIDPDRIILKKIILTGYPQRVSKQKATVRYMFHNPEDVRWFKPVEVWSKCGRRGRIKEPVGTHGAMKCILNGVLQQHDTLCMSLFKRTYPRWPEKWFPMTDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19978" PGL_stop="15121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19978" e_stop="19838"/>
            <exon e_start="19763" e_stop="19687"/>
            <exon e_start="19424" e_stop="19347"/>
            <exon e_start="18961" e_stop="18830"/>
            <exon e_start="18138" e_stop="18088"/>
            <exon e_start="17994" e_stop="17860"/>
            <exon e_start="17752" e_stop="17630"/>
            <exon e_start="17519" e_stop="17442"/>
            <exon e_start="16603" e_stop="16511"/>
            <exon e_start="16436" e_stop="16314"/>
            <exon e_start="15689" e_stop="15606"/>
            <exon e_start="15369" e_stop="15271"/>
            <exon e_start="15175" e_stop="15121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.108" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.121" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.165" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="19978" e_stop="19838" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19837" i_stop="19764" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19763" e_stop="19687" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19686" i_stop="19425" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19424" e_stop="19347" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="19346" i_stop="18962" i_length="385"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18961" e_stop="18830" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.108" acc_prob="0.670">
            <gDNA_intron_boundary i_start="18829" i_stop="18139" i_length="691"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="18088" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18087" i_stop="17995" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17994" e_stop="17860" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.121" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17859" i_stop="17753" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17752" e_stop="17630" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17629" i_stop="17520" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17519" e_stop="17442" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16603" e_stop="16511" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.932" acc_prob="0.165">
            <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16436" e_stop="16314" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.797">
            <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15606" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15369" e_stop="15271" e_length="99"/>
          </exon>
          <intron i_serial="12" don_prob="0.981" acc_prob="0.898">
            <gDNA_intron_boundary i_start="15270" i_stop="15176" i_length="95"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="15175" e_stop="15121" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19978" stop="19838"/>
              <exon start="19763" stop="19687"/>
              <exon start="19424" stop="19347"/>
              <exon start="18961" stop="18830"/>
              <exon start="18138" stop="18088"/>
              <exon start="17994" stop="17860"/>
              <exon start="17752" stop="17730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19415" stop="19347"/>
              <exon start="18961" stop="18830"/>
              <exon start="18138" stop="18088"/>
              <exon start="17994" stop="17860"/>
              <exon start="17752" stop="17630"/>
              <exon start="17519" stop="17442"/>
              <exon start="16603" stop="16511"/>
              <exon start="16436" stop="16365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17701" stop="17630"/>
              <exon start="17519" stop="17442"/>
              <exon start="16603" stop="16511"/>
              <exon start="16436" stop="16314"/>
              <exon start="15689" stop="15606"/>
              <exon start="15369" stop="15271"/>
              <exon start="15175" stop="15121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17701" stop="17630"/>
              <exon start="17519" stop="17442"/>
              <exon start="16603" stop="16511"/>
              <exon start="16436" stop="16314"/>
              <exon start="15689" stop="15606"/>
              <exon start="15369" stop="15312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17519" stop="17442"/>
              <exon start="16603" stop="16511"/>
              <exon start="16436" stop="16314"/>
              <exon start="15689" stop="15606"/>
              <exon start="15369" stop="15357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17495" stop="17442"/>
              <exon start="16603" stop="16511"/>
              <exon start="16436" stop="16314"/>
              <exon start="15689" stop="15606"/>
              <exon start="15369" stop="15355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTGTTAGAAGAAAAATTGATTGCTGTTTACTCAATCGTAGAGAAGATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCGCAATGTTCATAAAGTTTCTTCAAAAG : ATAAGAGTAGAATTGCGAAACCTGATCGCAATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATG : ATGAGGGAGCAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATT : GTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACG : GTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAG : GTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGT : GATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAG : TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG : GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG : GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG : GTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG : ACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAAGGGCACTTCTGAATATCAG : GCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGAGAGCGAGAATGAAG</gDNA_template>
            <first_frame> V  Y  C  *  K  K  N  *  L  L  F  T  Q  S  *  R  R  W  E  V  L  E  L  K  *  I  K  L  T  K  L  D  L  L  Q  S  H  L  A  M  F  I  K  F  L  Q  K  :  I  R  V  E  L  R  N  L  I  A  I  S  L  R  E  L  G  Q  L  G  F  S  V  I  R  * :   *  G  S  R  K  E  M  L  F  *  K  R  K  E  L  H  L  D  Q  I  V  R  P  E  L  L :   F  C  L  A  Y  P  D  Q  S  T  L  V  R  L  N  K  I  S  *  S  Y  C  P  Q  M  E  L  L  L  C  I  Q  Q  L  L  P  Q  N  I  S  *  E  Q  R :   F  *  K  H  L  M  V  I  S  W  H  V  W  R  W  P  R :   L  L  I  *  L  L  L  S  H  L  Q  V  P  L  M  K  K  I  V  I  *  M  H  L  D  L  T  A  F  R  S  L  E  L  L  V  F  L  V  Q  Q  Y  *  F  V :   I  Y  P  V  S  *  K  R  K  T  I  Q  R  R  F  V  H  L  A  C  L  L  N  F  P  R  I  V  S  S  I  Q  Q  I  Q  R  M  I  C  T  S :   S  C  G  F  S  R  S  K  G  S  Q  Y  H  I  G  V  I  S  G  H  I  *  W  L  K  R :   S  T  W  *  L  I  I  P  F  L  E  N  V  H  S  S  S  L  V  I  F  V  L  V  A  C  R  *  I  S  W :   F  T  *  Q  V  L  E  I  F  S  Y  P  R  S  N  F  S  R  I  H  V  P  *  M  *  E  K  E  E  T  *  W  S  L  M  T  *  M  R  H  R :   S  S  V  A  *  L  L  T  L  *  S  K  S  L  Y  L  L  R  M  S  L  I  H  W  L  G  N  R :   H  G  L  L  R  Q  K  W  L  K  Q  K  E  I  K  R  K  E  S  *  K  G  K  L  F  L  R  A  L  L  N  I  R :   L  L  G  L  *  K  I  Q  M  L  M  F  L  R  A  R  M  K </first_frame>
            <second_frame>  F  I  V  R  R  K  I  D  C  C  L  L  N  R  R  E  D  G  R  C  S  S  S  S  K  *  S  S  Q  N  S  I  C  F  K  V  I  S  Q  C  S  *  S  F  F  K  R :   *  E  *  N  C  E  T  *  S  Q  S  H  *  G  S  S  G  S  S  A  S  A  *  *  D   : D  E  G  A  E  K  R  C  S  F  E  R  E  K  S  F  I  W  I  K  *  S  A  Q  S  Y   : C  S  V  W  P  I  P  I  S  R  P  *  C  A  *  T  R  S  P  E  A  I  V  R  R  W  N  C  C  C  V  S  S  S  C  F  L  R  I  *  V  E  S  N   : G  F  K  S  T  S  W  *  S  L  G  M  Y  G  D  G  Q   : G  C  *  S  D  C  F  C  H  I  C  K  F  L  *  *  R  R  L  L  Y  R  C  I  W  I  S  L  P  F  D  L  *  S  S  W  S  S  *  Y  S  S  T  D  S   : *  S  T  Q  *  V  K  K  E  K  R  F  K  E  G  L  Y  I  *  P  V  F  *  I  S  R  G  L  *  V  L  S  S  R  Y  K  G  *  F  A  Q   : V  L  V  A  F  Q  G  A  K  V  L  S  T  T  L  A  *  S  A  A  I  S  N  G  S  K   : G  R  R  G  S  *  *  F  H  F  W  K  M  Y  T  P  P  L  W  L  Y  S  C  S  *  P  V  G  E  S  A   : G  S  H  N  R  C  W  R  F  S  V  I  Q  D  R  T  S  Q  G  S  M  F  P  E  C  E  K  R  R  R  L  N  G  V  *  *  H  E  *  G  T   : G  H  Q  L  L  D  S  *  P  Y  E  A  R  A  F  T  C  *  E  C  P  *  S  I  G  W  G  T   : D  M  A  Y  *  G  R  N  G  *  S  R  K  K  S  R  G  K  K  A  E  K  E  N  S  S  *  G  H  F  *  I  S   : G  C  L  D  C  R  R  F  R  C  *  C  F  *  E  R  E  *   </second_frame>
            <third_frame>   L  L  L  E  E  K  L  I  A  V  Y  S  I  V  E  K  M  G  G  A  R  A  Q  V  N  K  A  H  K  T  R  F  A  S  K  S  S  R  N  V  H  K  V  S  S  K   : D  K  S  R  I  A  K  P  D  R  N  L  T  K  G  A  R  A  A  R  L  Q  R  N  K  M  :  M  R  E  Q  K  R  D  A  L  L  K  E  K  R  A  S  S  G  S  N  S  P  P  R  V  I  :  V  L  F  G  L  S  R  S  V  D  L  S  A  L  E  Q  D  L  L  K  L  L  S  A  D  G  T  V  V  V  Y  P  A  V  A  S  S  E  Y  K  L  R  A  T  :  V  L  K  A  P  H  G  D  L  L  A  C  M  E  M  A  K  :  V  A  D  L  I  A  F  V  T  S  A  S  S  S  N  E  E  D  C  Y  I  D  A  F  G  S  H  C  L  S  I  F  R  A  L  G  L  P  S  T  A  V  L  I  R  :  D  L  P  S  E  L  K  K  K  N  D  S  K  K  V  C  T  S  S  L  S  S  E  F  P  E  D  C  K  F  Y  P  A  D  T  K  D  D  L  H  K  :  F  L  W  L  F  K  E  Q  R  F  S  V  P  H  W  R  N  Q  R  P  Y  L  M  A  Q  K  :  V  D  V  V  A  D  N  S  I  S  G  K  C  T  L  L  L  S  G  Y  I  R  A  R  S  L  S  V  N  Q  L  :  V  H  I  T  G  A  G  D  F  Q  L  S  K  I  E  L  L  K  D  P  C  S  L  N  V  R  K  G  G  D  L  M  E  S  D  D  M  N  E  A  Q  :  V  I  S  C  L  T  P  D  P  M  K  Q  E  P  L  L  V  E  N  V  P  D  P  L  A  G  E  Q  :  T  W  P  T  E  A  E  M  A  E  A  E  R  N  Q  E  E  R  K  L  K  R  K  T  L  P  K  G  T  S  E  Y  Q  :  A  A  W  I  V  E  D  S  D  A  D  V  S  E  S  E  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19976" stop="19838"/>
                    <exon start="19763" stop="19687"/>
                    <exon start="19424" stop="19347"/>
                    <exon start="18961" stop="18830"/>
                    <exon start="18138" stop="18088"/>
                    <exon start="17994" stop="17860"/>
                    <exon start="17752" stop="17630"/>
                    <exon start="17519" stop="17442"/>
                    <exon start="16603" stop="16511"/>
                    <exon start="16436" stop="16314"/>
                    <exon start="15689" stop="15606"/>
                    <exon start="15369" stop="15271"/>
                    <exon start="15175" stop="15122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLEEKLIAVYSIVEKMGGARAQVNKAHKTRFASKSSRNVHKVSSKDKSRIAKPDRNLTKGARAARLQRNKMMREQKRDALLKEKRASSGSNSPPRVIVLFGLSRSVDLSALEQDLLKLLSADGTVVVYPAVASSEYKLRATVLKAPHGDLLACMEMAKVADLIAFVTSASSSNEEDCYIDAFGSHCLSIFRALGLPSTAVLIRDLPSELKKKNDSKKVCTSSLSSEFPEDCKFYPADTKDDLHKFLWLFKEQRFSVPHWRNQRPYLMAQKVDVVADNSISGKCTLLLSGYIRARSLSVNQLVHITGAGDFQLSKIELLKDPCSLNVRKGGDLMESDDMNEAQVISCLTPDPMKQEPLLVENVPDPLAGEQTWPTEAEMAEAERNQEERKLKRKTLPKGTSEYQAAWIVEDSDADVSESENE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26835" PGL_stop="21806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25657" e_stop="25586"/>
            <exon e_start="25318" e_stop="25161"/>
            <exon e_start="24459" e_stop="24390"/>
            <exon e_start="24299" e_stop="24244"/>
            <exon e_start="23981" e_stop="23856"/>
            <exon e_start="23343" e_stop="23204"/>
            <exon e_start="22889" e_stop="22817"/>
            <exon e_start="22694" e_stop="22620"/>
            <exon e_start="22355" e_stop="21806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.755" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25657" e_stop="25586" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.978">
            <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25318" e_stop="25161" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24459" e_stop="24390" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24299" e_stop="24244" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.755" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23981" e_stop="23856" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23343" e_stop="23204" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22889" e_stop="22817" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.869">
            <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22694" e_stop="22620" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.781">
            <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="22355" e_stop="21806" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25586"/>
              <exon start="25318" stop="25161"/>
              <exon start="24459" stop="24390"/>
              <exon start="24299" stop="24244"/>
              <exon start="23981" stop="23856"/>
              <exon start="23343" stop="23204"/>
              <exon start="22889" stop="22817"/>
              <exon start="22694" stop="22675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25586"/>
              <exon start="25318" stop="25161"/>
              <exon start="24459" stop="24390"/>
              <exon start="24299" stop="24244"/>
              <exon start="23981" stop="23860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23914" stop="23856"/>
              <exon start="23343" stop="23204"/>
              <exon start="22889" stop="22817"/>
              <exon start="22694" stop="22620"/>
              <exon start="22355" stop="21977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23343" stop="23204"/>
              <exon start="22889" stop="22817"/>
              <exon start="22694" stop="22620"/>
              <exon start="22355" stop="21816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22298" stop="21806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22298" stop="21806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22296" stop="21806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG : ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG : GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG : GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG : GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG : GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG : GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG : ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT : AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</gDNA_template>
            <first_frame> S  K  Q  R  V  S  C  R  D  D  C  S  Y  L  L  P  E  Q  E  R  L  R  *  Q  :  I  N  C  L  C  S  R  V  L  G  S  M  G  G  S  S  *  L  R  S  L  R  C  G  F  F  P  F  *  V  K  R  N  S  Y  P  V  H  T  H  L  I  *  I  T  R  L  I  G  L  S  *  R :   L  F  Q  W  R  M  *  M  G  V  N  L  *  K  Q  G  I  S  V  K  E  E  M  :  E  E  E  L  I  L  I  G  I  G  V  W  I  G  A  R  K  R  R :   I  M  I  H  M  K  K  I  L  G  P  P  L  L  V  S  P  R  H  K  L  C  G  K  Y  V  H  H  L  N  H  M  Y  G  L  T  C  I  L  E  W  R :   L  Y  L  C  H  M  I  T  R  T  R  L  R  K  D  Y  L  L  R  G  *  D  *  C  L  K  S  *  I  V  F  S  *  M  I  V  A  W  L  D  L  A  E  A  L  S   : G  I  *  L  T  G  Q  Q  L  I  T  C  M  I  L  Q  E  C  P  C  L  S  P  S  R :   S  M  V  I  A  R  P  R  Q  R  T  A  L  R  C  S  I  P  L  T  S  L  L  L  I :   E  F  S  T  T  G  L  L  H  F  L  R  C  S  V  W  V  E  S  R  L  R  N  F  I  Q  M  Q  L  D  P  V  L  R  S  G  S  L  S  M  I  I  *  M  V  I  *  W  K  G  K  V  G  T  G  R  K  W  R  C  S  S  W  E  C  R  R  L  G  H  T  L  D  C  S  C  Y  H  L  Y  F  *  C  L  C  F  V  Q  E  S  Q  R  A  A  G  K  L  F  L  L  C  P  C  D  S  V  M  V  F  F  A  A  L  E  I  *  L  D  S  F  E  R  A  R  R  *  K  K  G  H  A  K  I  F  F  S  C  V  I  Y  Y  L  I  S  F  S  L  *  F  Y  I  E  C  *  S  L  E  R  L  L  L  M  L  N  C  *  H  C  L  V  E  S  V  D  R  *  Y  R  F  L  S  C  P </first_frame>
            <second_frame>  Q  N  K  G  Y  H  A  E  T  T  V  V  T  Y  C  R  N  K  K  D  C  D  D  R :   *  I  A  C  V  P  E  F  W  A  A  W  E  G  A  H  N  Y  G  A  C  V  A  D  S  F  H  F  K  *  R  G  I  L  I  Q  C  I  P  T  *  F  K  *  H  A  *  *  A  C  H  K   : G  C  S  N  G  E  C  E  W  A  *  T  C  R  S  R  G  S  L  *  K  K  K  W :   K  R  S  *  S  *  S  E  L  E  C  G  L  G  Q  E  R  E   : G  L  *  S  I  *  R  K  S  W  V  R  P  F  *  *  A  R  D  T  N  Y  A  E  N  M  C  I  I  *  T  T  C  M  G  *  R  A  F  W  N  G   : G  S  I  Y  A  I  *  S  Q  E  H  D  S  G  R  I  T  F  S  E  D  E  I  N  A  *  K  V  E  S  F  S  A  E  *  S  L  L  G  W  I  W  R  R  L  C  R  :  V  S  S  S  R  D  S  N  *  L  H  V  *  Y  C  K  S  A  H  V  F  H  L  R   : D  L  W  *  *  H  G  L  V  K  G  L  L  *  D  V  Q  S  H  *  H  H  Y  F  *   : *  S  S  Q  R  L  V  C  C  I  F  Y  A  V  Q  F  G  W  S  P  D  *  G  T  S  S  K  C  N  W  I  R  F  *  E  V  G  L  Y  R  *  L  S  E  W  L  F  N  G  K  E  K  *  V  R  E  E  N  G  G  A  R  A  G  N  A  G  D  *  D  I  L  *  I  V  L  V  I  I  C  T  S  D  V  Y  V  L  F  K  N  L  K  E  R  P  A  N  C  F  C  Y  V  L  V  I  L  *  W  Y  S  L  L  P  L  R  F  S  *  T  V  L  R  E  L  E  G  E  K  K  G  M  P  K  Y  S  L  A  V  *  F  I  T  *  F  L  F  P  F  D  S  I  *  N  A  R  A  *  K  G  S  C  *  C  *  I  V  N  I  V  W  L  R  V  W  I  D  N  I  D  F  C  H  V   </second_frame>
            <third_frame>   K  T  K  G  I  M  Q  R  R  L  *  L  L  I  A  G  T  R  K  T  A  M  T   : D  K  L  L  V  F  Q  S  F  G  Q  H  G  R  E  L  I  T  T  E  L  A  L  R  I  L  S  I  L  S  E  E  E  F  L  S  S  A  Y  P  L  N  L  N  N  T  L  D  R  L  V  I  K  :  V  V  P  M  E  N  V  N  G  R  K  L  V  E  A  G  D  L  C  E  R  R  N   : G  R  G  V  D  L  N  R  N  W  S  V  D  W  G  K  K  E  K  :  D  Y  D  P  Y  E  E  N  P  G  S  A  P  F  S  E  P  E  T  Q  I  M  R  K  I  C  A  S  F  E  P  H  V  W  V  N  V  H  S  G  M  E  :  A  L  F  M  P  Y  D  H  K  N  T  T  P  E  G  L  P  S  Q  R  M  R  L  M  L  E  K  L  N  R  F  Q  L  N  D  R  C  L  V  G  S  G  G  G  S  V  G :   Y  L  A  H  G  T  A  T  D  Y  M  Y  D  I  A  R  V  P  M  S  F  T  F  E  :  I  Y  G  D  S  T  A  S  S  K  D  C  F  K  M  F  N  P  T  D  I  T  T  F  N  :  R  V  L  N  D  W  S  A  A  F  F  T  L  F  S  L  G  G  V  Q  I  E  E  L  H  P  N  A  T  G  S  G  F  E  K  W  V  S  I  D  D  Y  L  N  G  Y  L  M  E  R  K  S  R  Y  G  K  K  M  E  V  L  E  L  G  M  Q  E  I  R  T  Y  F  R  L  F  L  L  S  S  V  L  L  M  F  M  F  C  S  R  I  S  K  S  G  R  Q  I  V  S  A  M  S  L  *  F  C  D  G  I  L  C  C  P  *  D  L  A  R  Q  F  *  E  S  *  K  V  K  K  R  A  C  Q  N  I  L  *  L  C  N  L  L  P  N  F  F  F  P  L  I  L  Y  R  M  L  E  L  R  K  A  L  V  D  V  E  L  L  T  L  F  G  *  E  C  G  *  I  I  *  I  F  V  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25622" stop="25586"/>
                    <exon start="25318" stop="25161"/>
                    <exon start="24459" stop="24390"/>
                    <exon start="24299" stop="24244"/>
                    <exon start="23981" stop="23856"/>
                    <exon start="23343" stop="23204"/>
                    <exon start="22889" stop="22817"/>
                    <exon start="22694" stop="22620"/>
                    <exon start="22355" stop="22044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIAGTRKTAMTDKLLVFQSFGQHGRELITTELALRILSILSEEEFLSSAYPLNLNNTLDRLVIKVVPMENVNGRKLVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGSAPFSEPETQIMRKICASFEPHVWVNVHSGMEALFMPYDHKNTTPEGLPSQRMRLMLEKLNRFQLNDRCLVGSGGGSVGYLAHGTATDYMYDIARVPMSFTFEIYGDSTASSKDCFKMFNPTDITTFNRVLNDWSAAFFTLFSLGGVQIEELHPNATGSGFEKWVSIDDYLNGYLMERKSRYGKKMEVLELGMQEIRTYFRLFLLSSVLLMFMFCSRISKSGRQIVSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26835" e_stop="26435"/>
            <exon e_start="25841" e_stop="25784"/>
            <exon e_start="25674" e_stop="25564"/>
            <exon e_start="25298" e_stop="25161"/>
            <exon e_start="24459" e_stop="24390"/>
            <exon e_start="24299" e_stop="24260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.991"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="26835" e_stop="26435" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26434" i_stop="25842" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25841" e_stop="25784" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25783" i_stop="25675" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="25674" e_stop="25564" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="25563" i_stop="25299" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="25298" e_stop="25161" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24459" e_stop="24390" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24299" e_stop="24260" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26835" stop="26435"/>
              <exon start="25841" stop="25784"/>
              <exon start="25674" stop="25564"/>
              <exon start="25298" stop="25161"/>
              <exon start="24459" stop="24390"/>
              <exon start="24299" stop="24260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAGACCAAGCAATCATAGCCGTTGAATCTCTACAAATCAACGACGCCCTGACCACTGTCGTCTTCTTCCCCATCACTGCCGGCATATATCTTTTCTTTCACAATTCCTATGTTTTTAAAGTTTTGGAATTGTCAAAGAAACCAAAAAGATTTGAAATAGTCGAGAAAAAAAAAAGACATTTGGGTTGAATCAAACAACAAAAATCACCGGATGTTGGTGTATTTATCTGTAATTTAAATGGGGTTGCGTCGTCGCCGGCGTTTGTATTCTTTACCCGTTTCGCCATTAGTCTTGTTTGGAGTTGTGTTGATTGTTCTGTGTTCTTCGTTTGTAAATGGAAATTCGAATTCCACGCAAATACCTATTACTCCCATCAATCACGATCTCTATCATACAAG : GGGAGCTTTGTTGGAAGAGATAGAATCATTGGTCCATAGACACCCAAGCAAGCTCTCT : ATGGAGACATTTTCCACTCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTT : AGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG : GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG : GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTG</gDNA_template>
            <first_frame> R  K  T  K  Q  S  *  P  L  N  L  Y  K  S  T  T  P  *  P  L  S  S  S  S  P  S  L  P  A  Y  I  F  S  F  T  I  P  M  F  L  K  F  W  N  C  Q  R  N  Q  K  D  L  K  *  S  R  K  K  K  D  I  W  V  E  S  N  N  K  N  H  R  M  L  V  Y  L  S  V  I  *  M  G  L  R  R  R  R  R  L  Y  S  L  P  V  S  P  L  V  L  F  G  V  V  L  I  V  L  C  S  S  F  V  N  G  N  S  N  S  T  Q  I  P  I  T  P  I  N  H  D  L  Y  H  T  R :   G  A  L  L  E  E  I  E  S  L  V  H  R  H  P  S  K  L  S  :  M  E  T  F  S  T  Q  N  K  G  Y  H  A  E  T  T  V  V  T  Y  C  R  N  K  K  D  C  D  D  R  S  K  L  K  I  L  L  :  S  F  G  Q  H  G  R  E  L  I  T  T  E  L  A  L  R  I  L  S  I  L  S  E  E  E  F  L  S  S  A  Y  P  L  N  L  N  N  T  L  D  R  L  V  I  K  :  V  V  P  M  E  N  V  N  G  R  K  L  V  E  A  G  D  L  C  E  R  R  N   : G  R  G  V  D  L  N  R  N  W  S  V  D   </first_frame>
            <second_frame>  E  R  P  S  N  H  S  R  *  I  S  T  N  Q  R  R  P  D  H  C  R  L  L  P  H  H  C  R  H  I  S  F  L  S  Q  F  L  C  F  *  S  F  G  I  V  K  E  T  K  K  I  *  N  S  R  E  K  K  K  T  F  G  L  N  Q  T  T  K  I  T  G  C  W  C  I  Y  L  *  F  K  W  G  C  V  V  A  G  V  C  I  L  Y  P  F  R  H  *  S  C  L  E  L  C  *  L  F  C  V  L  R  L  *  M  E  I  R  I  P  R  K  Y  L  L  L  P  S  I  T  I  S  I  I  Q   : G  E  L  C  W  K  R  *  N  H  W  S  I  D  T  Q  A  S  S  L :   W  R  H  F  P  L  K  T  K  G  I  M  Q  R  R  L  *  L  L  I  A  G  T  R  K  T  A  M  T  G  Q  S  L  R  S  F  L :   V  L  G  S  M  G  G  S  S  *  L  R  S  L  R  C  G  F  F  P  F  *  V  K  R  N  S  Y  P  V  H  T  H  L  I  *  I  T  R  L  I  G  L  S  *  R :   L  F  Q  W  R  M  *  M  G  V  N  L  *  K  Q  G  I  S  V  K  E  E  M  :  E  E  E  L  I  L  I  G  I  G  V  W  I  </second_frame>
            <third_frame>   K  D  Q  A  I  I  A  V  E  S  L  Q  I  N  D  A  L  T  T  V  V  F  F  P  I  T  A  G  I  Y  L  F  F  H  N  S  Y  V  F  K  V  L  E  L  S  K  K  P  K  R  F  E  I  V  E  K  K  K  R  H  L  G  *  I  K  Q  Q  K  S  P  D  V  G  V  F  I  C  N  L  N  G  V  A  S  S  P  A  F  V  F  F  T  R  F  A  I  S  L  V  W  S  C  V  D  C  S  V  F  F  V  C  K  W  K  F  E  F  H  A  N  T  Y  Y  S  H  Q  S  R  S  L  S  Y  K  :  G  S  F  V  G  R  D  R  I  I  G  P  *  T  P  K  Q  A  L   : Y  G  D  I  F  H  S  K  Q  R  V  S  C  R  D  D  C  S  Y  L  L  P  E  Q  E  R  L  R  *  Q  V  K  A  *  D  P  S   : *  F  W  A  A  W  E  G  A  H  N  Y  G  A  C  V  A  D  S  F  H  F  K  *  R  G  I  L  I  Q  C  I  P  T  *  F  K  *  H  A  *  *  A  C  H  K   : G  C  S  N  G  E  C  E  W  A  *  T  C  R  S  R  G  S  L  *  K  K  K  W :   K  R  S  *  S  *  S  E  L  E  C  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26595" stop="26435"/>
                    <exon start="25841" stop="25784"/>
                    <exon start="25674" stop="25564"/>
                    <exon start="25298" stop="25161"/>
                    <exon start="24459" stop="24390"/>
                    <exon start="24299" stop="24262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGLRRRRRLYSLPVSPLVLFGVVLIVLCSSFVNGNSNSTQIPITPINHDLYHTRGALLEEIESLVHRHPSKLSMETFSTQNKGYHAETTVVTYCRNKKDCDDRSKLKILLSFGQHGRELITTELALRILSILSEEEFLSSAYPLNLNNTLDRLVIKVVPMENVNGRKLVEAGDLCERRNGRGVDLNRNWSVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="31595" PGL_stop="31972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31595" e_stop="31972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="31595" e_stop="31972" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31595" stop="31972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTCACCTGGGACTCCAAAGTGCTTGCTTTGCGTCCACTTTGGATTTATCTCAGCAATCACATCAGTTGCGGAAATTGCTGAACTGAAAAAAAAGAAGAGCTGCAAGACAATTAAAACGGGATTTGGGTTAATCTTGTATCACCGCCGATTTTGGTTACCCCATCATTCTGATAACAAAACGGGACTCCACTTGGCACCATTACATGTAGAAGTATAACTCTTTTAATTGTATGCTCTCTGAATGGTTTTGGTCTGTGTCATATTCAGTATGCTAAGGTTGTCTATATAGCATAGGCATTGGAAACAAAACTTTTTGTGACAATGAACTTAACATGGTCTATTGATTTTGAATGTTTTAGGTGATTTGGTGTTGGAG</gDNA_template>
            <first_frame> R  S  P  G  T  P  K  C  L  L  C  V  H  F  G  F  I  S  A  I  T  S  V  A  E  I  A  E  L  K  K  K  K  S  C  K  T  I  K  T  G  F  G  L  I  L  Y  H  R  R  F  W  L  P  H  H  S  D  N  K  T  G  L  H  L  A  P  L  H  V  E  V  *  L  F  *  L  Y  A  L  *  M  V  L  V  C  V  I  F  S  M  L  R  L  S  I  *  H  R  H  W  K  Q  N  F  L  *  Q  *  T  *  H  G  L  L  I  L  N  V  L  G  D  L  V  L  E </first_frame>
            <second_frame>  V  H  L  G  L  Q  S  A  C  F  A  S  T  L  D  L  S  Q  Q  S  H  Q  L  R  K  L  L  N  *  K  K  R  R  A  A  R  Q  L  K  R  D  L  G  *  S  C  I  T  A  D  F  G  Y  P  I  I  L  I  T  K  R  D  S  T  W  H  H  Y  M  *  K  Y  N  S  F  N  C  M  L  S  E  W  F  W  S  V  S  Y  S  V  C  *  G  C  L  Y  S  I  G  I  G  N  K  T  F  C  D  N  E  L  N  M  V  Y  *  F  *  M  F  *  V  I  W  C  W   </second_frame>
            <third_frame>   F  T  W  D  S  K  V  L  A  L  R  P  L  W  I  Y  L  S  N  H  I  S  C  G  N  C  *  T  E  K  K  E  E  L  Q  D  N  *  N  G  I  W  V  N  L  V  S  P  P  I  L  V  T  P  S  F  *  *  Q  N  G  T  P  L  G  T  I  T  C  R  S  I  T  L  L  I  V  C  S  L  N  G  F  G  L  C  H  I  Q  Y  A  K  V  V  Y  I  A  *  A  L  E  T  K  L  F  V  T  M  N  L  T  W  S  I  D  F  E  C  F  R  *  F  G  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31595" stop="31813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSPGTPKCLLCVHFGFISAITSVAEIAELKKKKSCKTIKTGFGLILYHRRFWLPHHSDNKTGLHLAPLHVEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="32513" PGL_stop="33176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32513" e_stop="33176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32513" e_stop="33176" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32513" stop="33176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32513" stop="33107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32513" stop="32953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32841" stop="32990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAACCAGTCCGCTCACTTTCTCATTGAAGTGTCAGGTGAACTATTATTTGTTCAACAATTGATGATTGTGAA</gDNA_template>
            <first_frame> K  I  L  M  F  *  C  H  K  F  H  C  L  C  W  L  L  K  G  M  M  I  I  E  N  S  T  L  F  P  R  G  K  F  L  A  E  F  S  S  Q  K  L  E  G  N  S  V  Y  Q  H  R  D  G  F  S  R  *  T  I  E  H  L  Q  E  R  *  L  C  C  T  L  S  H  A  S  K  F  S  F  L  R  L  L  A  *  E  M  R  N  Q  N  V  P  T  *  L  S  T  M  L  Y  Y  L  L  A  H  P  *  Q  L  T  M  F  *  *  F  A  M  D  G  L  H  T  V  W  L  F  G  D  L  E  T  S  V  G  P  K  F  L  L  S  K  K  L  M  H  I  T  I  *  S  N  T  S  M  D  N  F  I  S  T  K  G  G  G  *  F  Q  L  L  T  S  Q  S  L  V  I  L  S  L  L  *  N  N  E  R  L  F  R  W  W  V  Y  R  I  T  Q  T  S  P  L  T  F  S  L  K  C  Q  V  N  Y  Y  L  F  N  N  *  *  L  *  </first_frame>
            <second_frame>  K  F  *  C  F  S  A  T  S  S  I  A  Y  A  G  C  *  R  G  *  *  L  S  R  I  L  L  S  F  Q  E  E  N  F  S  Q  N  F  P  P  R  S  *  R  E  T  L  F  T  N  T  G  M  A  F  H  G  E  L  *  S  I  Y  R  R  D  D  F  V  A  P  F  L  T  R  P  N  S  A  S  S  A  Y  W  L  E  R  *  G  I  K  T  S  L  R  D  Y  Q  P  C  C  I  I  C  *  P  I  R  N  N  *  L  C  S  D  N  L  L  W  T  A  Y  I  P  F  G  S  L  A  T  W  R  P  L  L  D  Q  N  S  Y  S  R  R  N  L  C  I  L  P  Y  D  P  I  L  Q  W  T  T  L  Y  Q  Q  R  A  V  A  S  F  S  Y  *  H  P  R  A  *  *  S  S  A  Y  C  K  T  T  R  G  C  S  D  G  G  F  I  E  S  H  K  P  V  R  S  L  S  H  *  S  V  R  *  T  I  I  C  S  T  I  D  D  C  E </second_frame>
            <third_frame>   N  F  D  V  L  V  P  Q  V  P  L  L  M  L  A  A  K  G  D  D  D  Y  R  E  F  Y  S  L  S  K  R  K  I  S  R  R  I  F  L  P  E  A  R  G  K  L  C  L  P  T  Q  G  W  L  F  T  V  N  Y  R  A  F  T  G  E  M  T  L  L  H  P  F  S  R  V  Q  I  Q  L  P  P  P  T  G  L  R  D  E  E  S  K  R  P  Y  V  T  I  N  H  V  V  L  S  A  S  P  S  V  T  T  D  Y  V  L  I  I  C  Y  G  R  P  T  Y  R  L  A  L  W  R  P  G  D  L  C  W  T  K  I  P  T  L  E  E  T  Y  A  Y  Y  H  M  I  Q  Y  F  N  G  Q  L  Y  I  N  K  G  R  W  L  V  S  A  I  D  I  P  E  P  S  N  P  Q  P  I  V  K  Q  R  E  V  V  Q  M  V  G  L  S  N  H  T  N  Q  S  A  H  F  L  I  E  V  S  G  E  L  L  F  V  Q  Q  L  M  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32515" stop="33174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFDVLVPQVPLLMLAAKGDDDYREFYSLSKRKISRRIFLPEARGKLCLPTQGWLFTVNYRAFTGEMTLLHPFSRVQIQLPPPTGLRDEESKRPYVTINHVVLSASPSVTTDYVLIICYGRPTYRLALWRPGDLCWTKIPTLEETYAYYHMIQYFNGQLYINKGRWLVSAIDIPEPSNPQPIVKQREVVQMVGLSNHTNQSAHFLIEVSGELLFVQQLMIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="33336" PGL_stop="33755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33336" e_stop="33755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="33336" e_stop="33755" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33336" stop="33755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33364" stop="33754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAATCATATATATTTTACCTATGATTGGACACGTGTGTACACCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTAACTGTTTCTGTATTTTTTTTATATTTCTTTATCCACAACTTTTTCTTATATAAACGAATCTAAATT</gDNA_template>
            <first_frame> T  *  S  Y  I  F  Y  L  *  L  D  T  C  V  H  R  R  R  *  F  K  R  D  R  G  L  Q  C  R  R  *  N  H  *  T  L  E  S  R  H  F  W  F  *  Y  C  I  P  G  D  L  G  Y  P  I  I  L  I  S  K  C  V  V  S  F  L  *  I  V  L  V  L  C  V  F  Y  M  L  F  D  A  K  N  S  L  L  I  S  C  D  Q  F  L  V  V  Q  V  D  L  D  T  K  Y  Y  E  I  D  *  T  F  S  L  L  L  H  L  T  L  T  V  S  V  F  F  L  Y  F  F  I  H  N  F  F  L  Y  K  R  I  *  I </first_frame>
            <second_frame>  P  N  H  I  Y  F  T  Y  D  W  T  R  V  Y  T  E  G  D  D  S  R  E  I  G  A  Y  N  V  E  D  E  T  I  E  P  L  N  Q  G  I  S  G  F  N  I  V  S  P  A  I  W  V  T  P  S  F  *  Y  Q  N  A  L  *  A  F  S  E  L  F  W  F  C  V  S  F  I  C  C  L  M  Q  K  T  V  C  *  S  H  V  I  N  S  W  W  Y  K  L  I  W  T  P  N  I  T  K  *  I  R  R  F  H  F  Y  C  I  *  H  *  L  F  L  Y  F  F  Y  I  S  L  S  T  T  F  S  Y  I  N  E  S  K   </second_frame>
            <third_frame>   L  I  I  Y  I  L  P  M  I  G  H  V  C  T  P  K  E  M  I  Q  E  R  *  G  L  T  M  S  K  M  K  P  L  N  P  *  I  K  A  F  L  V  L  I  L  Y  P  R  R  F  G  L  P  H  H  S  D  I  K  M  R  C  E  L  S  L  N  C  F  G  F  V  C  L  L  Y  V  V  *  C  K  K  Q  F  V  D  L  M  *  S  I  L  G  G  T  S  *  F  G  H  Q  I  L  R  N  R  L  D  V  F  T  S  I  A  F  D  I  N  C  F  C  I  F  F  I  F  L  Y  P  Q  L  F  L  I  *  T  N  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0106F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="34610" PGL_stop="34409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34610" e_stop="34409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34610" e_stop="34409" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34610" stop="34409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAACTTTCCGGAGATTTGGCTGGCCGGAAAAAGGTACTACCCCTCCCTCTATTTTCCGTTTGGTTAGTTGCTCATCGTCCATGATATTTAGCTATTAATGTGAAAAATGGTTCATTCCGTGTTATTAACCAATATGAATGAATCTATACATCCAGTTGTTCTCTAGCTTTCGATTTAAAATAGTTTGAAAGCTTTCAAGT</gDNA_template>
            <first_frame> *  N  F  P  E  I  W  L  A  G  K  R  Y  Y  P  S  L  Y  F  P  F  G  *  L  L  I  V  H  D  I  *  L  L  M  *  K  M  V  H  S  V  L  L  T  N  M  N  E  S  I  H  P  V  V  L  *  L  S  I  *  N  S  L  K  A  F  K  </first_frame>
            <second_frame>  K  T  F  R  R  F  G  W  P  E  K  G  T  T  P  P  S  I  F  R  L  V  S  C  S  S  S  M  I  F  S  Y  *  C  E  K  W  F  I  P  C  Y  *  P  I  *  M  N  L  Y  I  Q  L  F  S  S  F  R  F  K  I  V  *  K  L  S  S </second_frame>
            <third_frame>   K  L  S  G  D  L  A  G  R  K  K  V  L  P  L  P  L  F  S  V  W  L  V  A  H  R  P  *  Y  L  A  I  N  V  K  N  G  S  F  R  V  I  N  Q  Y  E  *  I  Y  T  S  S  C  S  L  A  F  D  L  K  *  F  E  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0106F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="37320" PGL_stop="39322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37320" e_stop="37620"/>
            <exon e_start="38496" e_stop="39322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37320" e_stop="37620" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.938">
            <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="38496" e_stop="39322" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37320" stop="37620"/>
              <exon start="38496" stop="38786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37321" stop="37620"/>
              <exon start="38496" stop="38706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38496" stop="39187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38496" stop="39130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38503" stop="39042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38650" stop="39322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38677" stop="39319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38799" stop="39156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG : ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTGAGA</gDNA_template>
            <first_frame> E  R  F  S  L  L  *  G  Q  I  Q  T  H  L  K  K  D  K  N  *  Q  Q  *  T  I  A  V  E  E  R  S  K  H  *  A  K  K  K  T  Q  F  F  S  P  L  S  *  F  S  A  A  Y  *  I  L  S  S  D  L  V  F  M  S  K  M  M  M  R  S  S  R  K  P  P  L  P  T  R  S  P  V  G  I  R  N  R  R  V  L  Q  S  T  P  N  L  I  R  T  P  P   : D  S  L  K  T  Q  L  P  K  R  V  S  S  S  V  E  E  W  E  L  R  P  E  Y  H  T  I  S  C  E  L  R  A  L  S  K  M  V  Q  N  K  F  G  N  E  D  V  N  A  A  D  N  S  D  S  L  N  A  K  R  S  P  L  F  E  R  G  K  F  Y  E  E  Y  S  A  R  R  N  E  R  L  K  R  K  K  G  G  D  T  V  D  E  K  K  P  V  Y  D  L  G  V  R  V  E  S  S  K  K  K  G  E  P  K  M  F  Q  S  A  R  K  S  V  V  A  S  T  P  I  A  E  R  R  E  T  S  R  Y  F  L  R  S  T  A  S  K  E  N  R  K  P  P  L  P  I  S  M  D  K  S  V  G  L  S  E  R  R  T  T  A  R  R  V  R  K  I  *  V  G  M  I  S  P  L  I  D  V  C  *  T  K  K  *  E  V  V  V  F  G  *  F  G  W  Q  M  *  L  V  M  S  Q  N  F  Q  I  R  V  F  D  V  *  S  T  T  K  R  L  C  S  *  *  L  Q  F  T  F  M  A  D  C  N  M  N  F  L  F  C  I  A  Y  R  *  V  Y  C  A  C  I  D  A  I  F  T  L  Q  N  Q  D  K  S  I  E  L  L  A  L  R </first_frame>
            <second_frame>  S  A  S  P  Y  F  R  A  K  F  K  L  I  *  K  R  T  K  I  D  N  N  K  L  L  P  *  K  N  A  Q  S  T  K  P  K  K  K  H  N  F  F  L  L  F  H  N  F  P  P  L  I  E  S  *  V  L  I  W  F  S  C  P  R  *  *  *  D  L  A  V  N  P  H  F  L  L  D  L  L  L  E  F  G  I  V  V  F  F  N  L  L  Q  T  S  F  E  P  H  Q  :  I  L  *  K  L  S  C  L  R  G  L  A  A  V  L  K  N  G  N  F  V  Q  S  T  I  P  F  L  V  N  *  G  L  C  P  K  W  C  R  T  N  L  V  T  R  M  *  M  L  L  I  T  L  I  H  *  M  Q  R  E  V  L  Y  S  K  G  A  S  F  M  K  S  T  L  L  E  G  M  R  D  *  R  G  R  R  V  V  T  L  W  M  R  R  N  Q  C  M  I  W  E  L  E  L  N  L  P  R  K  K  E  S  L  R  C  S  K  A  L  G  N  Q  L  L  L  L  H  Q  *  Q  R  G  E  K  L  Q  G  I  S  *  E  A  Q  L  V  R  R  T  G  S  L  L  Y  Q  S  A  W  T  N  L  W  G  Y  Q  R  G  E  L  Q  P  E  E  F  G  K  F  E  L  E  *  F  P  P  L  *  T  F  V  E  Q  K  S  K  K  *  *  F  L  D  D  L  D  G  K  C  S  *  L  C  H  K  I  F  R  L  G  C  L  M  F  E  V  Q  R  R  G  Y  V  A  D  S  F  S  S  L  S  W  L  I  V  I  *  I  F  F  F  A  L  L  I  V  K  F  I  V  H  V  L  M  Q  S  L  H  C  R  T  K  I  S  L  L  N  Y  L  H  *   </second_frame>
            <third_frame>   A  L  L  P  T  L  G  P  N  S  N  S  S  K  K  G  Q  K  L  T  T  I  N  Y  C  R  R  R  T  L  K  A  L  S  Q  K  K  N  T  I  F  F  S  S  F  I  I  F  R  R  L  L  N  L  E  F  *  F  G  F  H  V  Q  D  D  D  E  I  *  P  *  T  P  T  S  Y  *  I  S  C  W  N  S  E  S  S  C  S  S  I  Y  S  K  P  H  S  N  P  T  R :   F  F  E  N  S  V  A  *  E  G  *  Q  Q  C  *  R  M  G  T  S  S  R  V  P  Y  H  F  L  *  I  K  G  F  V  Q  N  G  A  E  Q  I  W  *  R  G  C  E  C  C  *  *  L  *  F  I  E  C  K  E  K  S  F  I  R  K  G  Q  V  L  *  R  V  L  C  *  K  E  *  E  I  E  E  E  E  G  W  *  H  C  G  *  E  E  T  S  V  *  F  G  S  *  S  *  I  F  Q  E  K  R  R  A  *  D  V  P  K  R  *  E  I  S  C  C  F  Y  T  N  S  R  E  E  R  N  F  K  V  F  L  E  K  H  S  *  *  G  E  Q  E  A  S  F  T  N  Q  H  G  Q  I  C  G  V  I  R  E  E  N  Y  S  Q  K  S  S  E  N  L  S  W  N  D  F  P  P  Y  R  R  L  L  N  K  K  V  R  S  S  S  F  W  M  I  W  M  A  N  V  V  S  Y  V  T  K  F  S  D  *  G  V  *  C  L  K  Y  N  E  E  A  M  *  L  I  A  S  V  H  F  H  G  *  L  *  Y  E  F  S  F  L  H  C  L  S  L  S  L  L  C  M  Y  *  C  N  L  Y  I  A  E  P  R  *  V  Y  *  T  T  C  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37479" stop="37620"/>
                    <exon start="38496" stop="39022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSDLVFMSKMMMRSSRKPPLPTRSPVGIRNRRVLQSTPNLIRTPPDSLKTQLPKRVSSSVEEWELRPEYHTISCELRALSKMVQNKFGNEDVNAADNSDSLNAKRSPLFERGKFYEEYSARRNERLKRKKGGDTVDEKKPVYDLGVRVESSKKKGEPKMFQSARKSVVASTPIAERRETSRYFLRSTASKENRKPPLPISMDKSVGLSERRTTARRVRKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37440" e_stop="37620"/>
            <exon e_start="38496" e_stop="38671"/>
            <exon e_start="38985" e_stop="39255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.938" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="37440" e_stop="37620" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.938">
            <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38496" e_stop="38671" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38672" i_stop="38984" i_length="313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38985" e_stop="39255" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37440" stop="37620"/>
              <exon start="38496" stop="38671"/>
              <exon start="38985" stop="39255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG : ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAG : AGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTG</gDNA_template>
            <first_frame> F  F  S  P  L  S  *  F  S  A  A  Y  *  I  L  S  S  D  L  V  F  M  S  K  M  M  M  R  S  S  R  K  P  P  L  P  T  R  S  P  V  G  I  R  N  R  R  V  L  Q  S  T  P  N  L  I  R  T  P  P   : D  S  L  K  T  Q  L  P  K  R  V  S  S  S  V  E  E  W  E  L  R  P  E  Y  H  T  I  S  C  E  L  R  A  L  S  K  M  V  Q  N  K  F  G  N  E  D  V  N  A  A  D  N  S  D  S  L  N  A  K  :  R  G  E  L  Q  P  E  E  F  G  K  F  E  L  E  *  F  P  P  L  *  T  F  V  E  Q  K  S  K  K  *  *  F  L  D  D  L  D  G  K  C  S  *  L  C  H  K  I  F  R  L  G  C  L  M  F  E  V  Q  R  R  G  Y  V  A  D  S  F  S  S  L  S  W  L  I  V  I  *  I  F  F  F  A  L  L  I  V  K  F  I  </first_frame>
            <second_frame>  F  F  L  L  F  H  N  F  P  P  L  I  E  S  *  V  L  I  W  F  S  C  P  R  *  *  *  D  L  A  V  N  P  H  F  L  L  D  L  L  L  E  F  G  I  V  V  F  F  N  L  L  Q  T  S  F  E  P  H  Q  :  I  L  *  K  L  S  C  L  R  G  L  A  A  V  L  K  N  G  N  F  V  Q  S  T  I  P  F  L  V  N  *  G  L  C  P  K  W  C  R  T  N  L  V  T  R  M  *  M  L  L  I  T  L  I  H  *  M  Q  R :   E  E  N  Y  S  Q  K  S  S  E  N  L  S  W  N  D  F  P  P  Y  R  R  L  L  N  K  K  V  R  S  S  S  F  W  M  I  W  M  A  N  V  V  S  Y  V  T  K  F  S  D  *  G  V  *  C  L  K  Y  N  E  E  A  M  *  L  I  A  S  V  H  F  H  G  *  L  *  Y  E  F  S  F  L  H  C  L  S  L  S  L  L </second_frame>
            <third_frame>   F  F  S  S  F  I  I  F  R  R  L  L  N  L  E  F  *  F  G  F  H  V  Q  D  D  D  E  I  *  P  *  T  P  T  S  Y  *  I  S  C  W  N  S  E  S  S  C  S  S  I  Y  S  K  P  H  S  N  P  T  R :   F  F  E  N  S  V  A  *  E  G  *  Q  Q  C  *  R  M  G  T  S  S  R  V  P  Y  H  F  L  *  I  K  G  F  V  Q  N  G  A  E  Q  I  W  *  R  G  C  E  C  C  *  *  L  *  F  I  E  C  K   : E  R  R  T  T  A  R  R  V  R  K  I  *  V  G  M  I  S  P  L  I  D  V  C  *  T  K  K  *  E  V  V  V  F  G  *  F  G  W  Q  M  *  L  V  M  S  Q  N  F  Q  I  R  V  F  D  V  *  S  T  T  K  R  L  C  S  *  *  L  Q  F  T  F  M  A  D  C  N  M  N  F  L  F  C  I  A  Y  R  *  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37479" stop="37620"/>
                    <exon start="38496" stop="38671"/>
                    <exon start="38985" stop="39032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSDLVFMSKMMMRSSRKPPLPTRSPVGIRNRRVLQSTPNLIRTPPDSLKTQLPKRVSSSVEEWELRPEYHTISCELRALSKMVQNKFGNEDVNAADNSDSLNAKRGELQPEEFGKFELE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="39276" PGL_stop="38626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39276" e_stop="38626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="39276" e_stop="38626" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39276" stop="38626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATTGCATCAATACATGCACAATAAACTTAACGATAAGCAATGCAAAAAAGAAAATTCATATTACAATCAGCCATGAAAGTGAACTGAAGCTATCAGCTACATAGCCTCTTCGTTGTACTTCAAACATCAAACACCCTAATCTGAAAATTTTGTGACATAACTAACTACATTTGCCATCCAAATCATCCAAAAACTACTACTTCTTACTTTTTTGTTCAACAAACGTCTATAAGGGGGGAAATCATTCCAACTCAAATTTTCCGAACTCTTCTGGCTGTAGTTCTCCTCTCTGATAACCCCACAGATTTGTCCATGCTGATTGGTAAAGGAGGCTTCCTGTTCTCCTTACTAGCTGTGCTTCTCAAGAAATACCTTGAAGTTTCTCTCCTCTCTGCTATTGGTGTAGAAGCAACAACTGATTTCCTAGCGCTTTGGAACATCTTAGGCTCTCCTTTTTTCTTGGAAGATTCAACTCTAACTCCCAAATCATACACTGGTTTCTTCTCATCCACAGTGTCACCACCCTTCTTCCTCTTCAATCTCTCATTCCTTCTAGCAGAGTACTCTTCATAAAACTTGCCCCTTTCGAATAAAGGACTTCTCTTTGCATTCAATGAATCAGAGTTATCAGCAGCATTCACATCCTCG</gDNA_template>
            <first_frame> K  I  A  S  I  H  A  Q  *  T  *  R  *  A  M  Q  K  R  K  F  I  L  Q  S  A  M  K  V  N  *  S  Y  Q  L  H  S  L  F  V  V  L  Q  T  S  N  T  L  I  *  K  F  C  D  I  T  N  Y  I  C  H  P  N  H  P  K  T  T  T  S  Y  F  F  V  Q  Q  T  S  I  R  G  E  I  I  P  T  Q  I  F  R  T  L  L  A  V  V  L  L  S  D  N  P  T  D  L  S  M  L  I  G  K  G  G  F  L  F  S  L  L  A  V  L  L  K  K  Y  L  E  V  S  L  L  S  A  I  G  V  E  A  T  T  D  F  L  A  L  W  N  I  L  G  S  P  F  F  L  E  D  S  T  L  T  P  K  S  Y  T  G  F  F  S  S  T  V  S  P  P  F  F  L  F  N  L  S  F  L  L  A  E  Y  S  S  *  N  L  P  L  S  N  K  G  L  L  F  A  F  N  E  S  E  L  S  A  A  F  T  S  S </first_frame>
            <second_frame>  R  L  H  Q  Y  M  H  N  K  L  N  D  K  Q  C  K  K  E  N  S  Y  Y  N  Q  P  *  K  *  T  E  A  I  S  Y  I  A  S  S  L  Y  F  K  H  Q  T  P  *  S  E  N  F  V  T  *  L  T  T  F  A  I  Q  I  I  Q  K  L  L  L  L  T  F  L  F  N  K  R  L  *  G  G  K  S  F  Q  L  K  F  S  E  L  F  W  L  *  F  S  S  L  I  T  P  Q  I  C  P  C  *  L  V  K  E  A  S  C  S  P  Y  *  L  C  F  S  R  N  T  L  K  F  L  S  S  L  L  L  V  *  K  Q  Q  L  I  S  *  R  F  G  T  S  *  A  L  L  F  S  W  K  I  Q  L  *  L  P  N  H  T  L  V  S  S  H  P  Q  C  H  H  P  S  S  S  S  I  S  H  S  F  *  Q  S  T  L  H  K  T  C  P  F  R  I  K  D  F  S  L  H  S  M  N  Q  S  Y  Q  Q  H  S  H  P   </second_frame>
            <third_frame>   D  C  I  N  T  C  T  I  N  L  T  I  S  N  A  K  K  K  I  H  I  T  I  S  H  E  S  E  L  K  L  S  A  T  *  P  L  R  C  T  S  N  I  K  H  P  N  L  K  I  L  *  H  N  *  L  H  L  P  S  K  S  S  K  N  Y  Y  F  L  L  F  C  S  T  N  V  Y  K  G  G  N  H  S  N  S  N  F  P  N  S  S  G  C  S  S  P  L  *  *  P  H  R  F  V  H  A  D  W  *  R  R  L  P  V  L  L  T  S  C  A  S  Q  E  I  P  *  S  F  S  P  L  C  Y  W  C  R  S  N  N  *  F  P  S  A  L  E  H  L  R  L  S  F  F  L  G  R  F  N  S  N  S  Q  I  I  H  W  F  L  L  I  H  S  V  T  T  L  L  P  L  Q  S  L  I  P  S  S  R  V  L  F  I  K  L  A  P  F  E  *  R  T  S  L  C  I  Q  *  I  R  V  I  S  S  I  H  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39129" stop="38701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFCDITNYICHPNHPKTTTSYFFVQQTSIRGEIIPTQIFRTLLAVVLLSDNPTDLSMLIGKGGFLFSLLAVLLKKYLEVSLLSAIGVEATTDFLALWNILGSPFFLEDSTLTPKSYTGFFSSTVSPPFFLFNLSFLLAEYSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="43684" PGL_stop="39579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43684" e_stop="43578"/>
            <exon e_start="42221" e_stop="42122"/>
            <exon e_start="42023" e_stop="41990"/>
            <exon e_start="41901" e_stop="41825"/>
            <exon e_start="41281" e_stop="41256"/>
            <exon e_start="41178" e_stop="41014"/>
            <exon e_start="40581" e_stop="40467"/>
            <exon e_start="39983" e_stop="39579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.418" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.679" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.541" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43684" e_stop="43578" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42221" e_stop="42122" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.418" acc_prob="0.831">
            <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42023" e_stop="41990" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.840">
            <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="41825" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.679">
            <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41281" e_stop="41256" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="0.773" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41178" e_stop="41014" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40581" e_stop="40467" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.541" acc_prob="0.956">
            <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39983" e_stop="39579" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43684" stop="43578"/>
              <exon start="42221" stop="42122"/>
              <exon start="42023" stop="41990"/>
              <exon start="41901" stop="41825"/>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41014"/>
              <exon start="40581" stop="40533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43675" stop="43578"/>
              <exon start="42221" stop="42122"/>
              <exon start="42023" stop="41990"/>
              <exon start="41901" stop="41825"/>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43661" stop="43578"/>
              <exon start="42221" stop="42122"/>
              <exon start="42023" stop="41990"/>
              <exon start="41901" stop="41825"/>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41014"/>
              <exon start="40581" stop="40505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41014"/>
              <exon start="40581" stop="40467"/>
              <exon start="39983" stop="39579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC : GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT : TTATTAAGACCTCGACCTCGGAAACTTGGTCTAG : GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT : CCAAAATACCTGCCAAGATTTATCAA : GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG : GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAG : GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</gDNA_template>
            <first_frame> E  I  N  K  M  G  E  K  N  K  Y  S  I  I  I  P  T  Y  N  E  R  L  N  I  A  L  I  I  Y  L  V  F  K  H  L  T :   D  V  D  F  E  I  I  V  V  D  D  G  S  P  D  G  T  Q  D  I  V  K  Q  L  Q  K  V  Y  G  E  D  R  I  :  L  L  R  P  R  P  R  K  L  G  L   : G  T  A  Y  I  H  G  L  K  H  A  S  G  N  F  V  V  I  M  D  A  D  L  S  H  H  :  P  K  Y  L  P  R  F  I  K :   K  Q  M  E  T  G  A  N  I  V  T  G  T  R  Y  V  S  S  G  G  V  H  G  W  N  L  M  R  K  L  T  S  R  G  A  N  V  L  A  Q  T  L  L  W  P  G  V  S  D  L  T  G  S  F  R :   L  Y  Q  K  S  A  L  E  D  I  I  S  S  C  V  S  K  G  Y  V  F  Q  M  E  M  I  V  R  A  S  R  K  G  Y  R  I  E  E  :  V  P  I  T  F  V  D  R  V  F  G  S  S  K  L  G  G  S  E  I  V  E  Y  L  K  G  L  L  Y  L  L  V  T  T  *  Y  V  *  Q  A  A  *  P  E  N  L  K  T  *  V  V  L  Q  P  V  T  F  *  R  L  E  L  G  P  Y  N  K  F  F  F  F  L  L  Q  L  M  *  P  K  L  *  *  M  S  Y  Y  V  L  E  R  V  L  L  K  *  F  P  M  L  L  W  F  I  L  W  M  M  L  S  I  F  G  *  Y  T  C  S  S  Y  L  *  I  L  T  C  I  F  Q  L  I  *  M  S  T  S </first_frame>
            <second_frame>  R  S  T  K  W  G  R  R  T  S  T  V  *  L  Y  L  P  T  M  N  V  S  I  L  L  S  S  S  T  S  S  S  S  I  S   : R  M  L  I  L  K  *  *  *  W  M  M  E  V  Q  M  A  H  R  I  L  S  N  N  C  R  K  Y  M  E  K  I  V  F :   Y  *  D  L  D  L  G  N  L  V  *  :  A  L  R  I  F  M  V  *  S  M  P  Q  A  I  L  L  L  L  W  M  R  I  F  L  T  I :   Q  N  T  C  Q  D  L  S   : R  N  K  W  R  Q  V  P  I  *  L  L  E  L  D  M  F  L  V  V  V  S  T  D  G  T  L  C  A  N  *  R  A  G  E  P  M  S  L  H  R  H  Y  F  G  R  V  Y  Q  T  *  L  D  P  S   : G  C  T  R  S  L  H  *  K  T  S  *  A  L  V  S  V  K  D  M  F  F  R  W  R  *  L  L  G  L  Q  E  K  V  T  A  L  K  R :   F  Q  L  L  S  L  I  E  Y  L  E  V  L  S  L  E  D  L  K  *  W  S  I  *  R  A  F  C  I  F  W  L  Q  L  D  M  F  N  K  L  H  D  Q  R  I  *  R  L  E  L  F  C  N  L  *  H  S  E  D  L  N  *  D  H  I  T  N  S  F  S  F  C  F  S  *  C  N  Q  N  F  D  E  *  A  I  M  Y  W  K  E  C  C  *  S  N  F  Q  C  Y  F  G  L  F  C  G  *  C  F  P  F  L  D  N  T  L  V  Q  V  I  C  E  Y  *  L  A  F  S  S  L  Y  K  C  L  L   </second_frame>
            <third_frame>   D  Q  Q  N  G  G  E  E  Q  V  Q  Y  N  Y  T  Y  L  Q  *  T  S  Q  Y  C  S  H  H  L  P  R  L  Q  A  S  H  :  G  C  *  F  *  N  N  S  S  G  *  W  K  S  R  W  H  T  G  Y  C  Q  T  I  A  E  S  I  W  R  R  S  Y   : F  I  K  T  S  T  S  E  T  W  S  R :   H  C  V  Y  S  W  F  E  A  C  L  R  Q  F  C  C  Y  Y  G  C  G  S  F  S  P   : S  K  I  P  A  K  I  Y  Q  :  E  T  N  G  D  R  C  Q  Y  S  Y  W  N  S  I  C  F  *  W  W  C  P  R  M  E  P  Y  A  Q  I  D  E  Q  G  S  Q  C  P  C  T  D  T  T  L  A  G  C  I  R  L  N  W  I  L  P  :  A  V  P  E  V  C  T  R  R  H  H  K  L  L  C  Q  *  R  I  C  F  S  D  G  D  D  C  *  G  F  K  K  R  L  P  H  *  R   : G  S  N  Y  F  R  *  *  S  I  W  K  F  *  A  W  R  I  *  N  S  G  V  S  K  G  P  S  V  S  S  G  Y  N  L  I  C  L  T  S  C  M  T  R  E  S  E  D  L  S  C  F  A  T  C  D  I  L  K  T  *  T  R  T  I  *  Q  I  L  F  L  F  A  S  A  D  V  T  K  T  L  M  N  E  L  L  C  I  G  K  S  V  A  E  V  I  S  N  A  T  L  V  Y  F  V  D  D  A  F  H  F  W  I  I  H  L  F  K  L  S  V  N  I  N  L  H  F  P  A  Y  I  N  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43684" stop="43578"/>
                    <exon start="42221" stop="42122"/>
                    <exon start="42023" stop="41990"/>
                    <exon start="41901" stop="41825"/>
                    <exon start="41281" stop="41256"/>
                    <exon start="41178" stop="41014"/>
                    <exon start="40581" stop="40467"/>
                    <exon start="39983" stop="39879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EINKMGEKNKYSIIIPTYNERLNIALIIYLVFKHLTDVDFEIIVVDDGSPDGTQDIVKQLQKVYGEDRILLRPRPRKLGLGTAYIHGLKHASGNFVVIMDADLSHHPKYLPRFIKKQMETGANIVTGTRYVSSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYQKSALEDIISSCVSKGYVFQMEMIVRASRKGYRIEEVPITFVDRVFGSSKLGGSEIVEYLKGLLYLLVTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39786" stop="39580"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QILFLFASADVTKTLMNELLCIGKSVAEVISNATLVYFVDDAFHFWIIHLFKLSVNINLHFPAYINVYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="51918" PGL_stop="44252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51918" e_stop="51801"/>
            <exon e_start="50564" e_stop="50445"/>
            <exon e_start="50124" e_stop="49908"/>
            <exon e_start="49416" e_stop="49347"/>
            <exon e_start="49202" e_stop="48933"/>
            <exon e_start="48717" e_stop="47811"/>
            <exon e_start="47615" e_stop="47499"/>
            <exon e_start="47303" e_stop="47241"/>
            <exon e_start="46946" e_stop="46839"/>
            <exon e_start="46469" e_stop="46368"/>
            <exon e_start="46195" e_stop="46128"/>
            <exon e_start="45985" e_stop="45904"/>
            <exon e_start="45667" e_stop="45551"/>
            <exon e_start="44763" e_stop="44252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.150" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.993"/>
          <exon-intron don_prob="0.992" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.278" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51918" e_stop="51801" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.338">
            <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50564" e_stop="50445" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.861" acc_prob="0.967">
            <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50124" e_stop="49908" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.697" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49416" e_stop="49347" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49202" e_stop="48933" e_length="270"/>
          </exon>
          <intron i_serial="5" don_prob="0.150" acc_prob="0.971">
            <gDNA_intron_boundary i_start="48932" i_stop="48718" i_length="215"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="48717" e_stop="47811" e_length="907"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47810" i_stop="47616" i_length="195"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47615" e_stop="47499" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.966">
            <gDNA_intron_boundary i_start="47498" i_stop="47304" i_length="195"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47303" e_stop="47241" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47240" i_stop="46947" i_length="294"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46946" e_stop="46839" e_length="108"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.278">
            <gDNA_intron_boundary i_start="46838" i_stop="46470" i_length="369"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46469" e_stop="46368" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46367" i_stop="46196" i_length="172"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="46195" e_stop="46128" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46127" i_stop="45986" i_length="142"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45985" e_stop="45904" e_length="82"/>
          </exon>
          <intron i_serial="12" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45903" i_stop="45668" i_length="236"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45667" e_stop="45551" e_length="117"/>
          </exon>
          <intron i_serial="13" don_prob="0.961" acc_prob="0.983">
            <gDNA_intron_boundary i_start="45550" i_stop="44764" i_length="787"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="44763" e_stop="44252" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51918" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="48933"/>
              <exon start="48717" stop="48698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51915" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="48977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51911" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="48933"/>
              <exon start="48717" stop="47811"/>
              <exon start="47615" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45904"/>
              <exon start="45667" stop="45551"/>
              <exon start="44763" stop="44259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51911" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51908" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="49096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51907" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49347"/>
              <exon start="49202" stop="48999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49075" stop="48933"/>
              <exon start="48717" stop="48268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48403" stop="48133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48402" stop="47893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48344" stop="47811"/>
              <exon start="47615" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48344" stop="47847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48344" stop="47899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48343" stop="48005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48326" stop="47858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48042" stop="47811"/>
              <exon start="47615" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45904"/>
              <exon start="45667" stop="45638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47562" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45904"/>
              <exon start="45667" stop="45648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47562" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47545" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45904"/>
              <exon start="45667" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47518" stop="47499"/>
              <exon start="47303" stop="47241"/>
              <exon start="46946" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45904"/>
              <exon start="45667" stop="45551"/>
              <exon start="44763" stop="44658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46903" stop="46839"/>
              <exon start="46469" stop="46368"/>
              <exon start="46195" stop="46128"/>
              <exon start="45985" stop="45904"/>
              <exon start="45667" stop="45551"/>
              <exon start="44763" stop="44356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45980" stop="45904"/>
              <exon start="45667" stop="45551"/>
              <exon start="44763" stop="44252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44763" stop="44259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246213" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44549" stop="44253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGGCGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGG : GCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGG : ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG : GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCA : GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAG : GTACAACTTCAAATACCCTCGCCCTTCCAAACCCCGAGCCCCACGAATCTACGAAGCACATGTCGGCATGAGCAGCTCAGAGCCACGTGTAAATTCGTATCGTGAGTTTGCAGATGATGTTTTACCTCGAATTAAGGCAAATAACTATAATACTGTCCAGTTGATGGCCATAATGGAACATTCTTACTATGGATCATTTGGGTATCATGTTACAAACTTTTTTGCTGTGAGCAGTAGATCTGGAAATCCGGAGGACCTAAAGTATCTGATAGATAAAGCACATAGCTTGGGTTTACAGGTTCTGGTGGATGTAGTTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAG : TCTATTGTCGGTGACAAGACCATTGCATTTCTCCTAATGGACAAAGAGATGTATTCTGGCATGTCTTGCTTGACAGATGCTTCTCCTGTTGTTGATCGAGGAATTGCGCTTCACAAG : ATGATCCACTTTTTCACAATGGCCTTGGGAGGAGAGGGGTACCTCAATTTCATGGGTAACGAG : TTTGGCCATCCTGAGTGGATTGACTTCCCTAGAGAGGGCAATAATTGGAGTTATGACAAATGTAGACGCCAGTGGAACCTCGCGGATAGTCAACACTTGAGATACAAG : TTCATGAACGCATTTGATAGAGCTATGAATTCACTCGACGAGAAGTTCTCATTCCTTGCATCAGGAAAACAGATAGTAAGCAGCATCGATGATGATAATAAG : GTTGTTGTGTTTGAACGTGGTGACCTGGTATTTGTATTCAACTTCCACCCAAATAACACATACGAAGG : GTATAAAGTTGGATGTGACTTGCCAGGGAAGTACAGAGTTGCACTGGACAGTGATGCTTGGGAATTTGGTGGCCATGGAAGA : GTTGGTCATGATGTTGACCATTTCACATCACCAGAAGGAATACCTGGAGTTCCAGAAACAAATTTCAATGGTCGTCCAAATTCCTTCAAATTGCTGTCTCCTGCGCACACATGTGTG : GCTTATTACAGAGTTGACGAATGCATGTCAGAAACTGAAGTTTACCAGACAGACATTTCTAATGAGCTACTACCAACAGCCAATATCGAGGAGAGTGACGAGAAACTTAAAGATTCATTATCTACAAATATCAGTAACATCGGTCAGACTGTTGTAGCTTCTGTTGAGGAGAGAGACAAGGAACTTAAAGATTCACCTATCTGTAAGCATCATTAGTGATGTTGTTCAAGCTGACTGAGGTGATTCGGATGCAAACGTCTGGATCAGATGTCTTCTACGTTGGTGATCTTAGTCCGCGCATGTTGCCTTCAGGGTGGTAGCATTTCCTCTGCAAATTATTAGCATCCAATAAATTTACTGGTTGTAAATAGAAAAAATGCATTTGCATGTATGTGTTCCTCTGAAATTTTCCCAGTTTTTGGTGCTTTGCCTTTGAAGCCAAGTCTCTATATGTAATAAGAAGACTAAGAACAATCACATATATAAAATGTTACTAGTAGATTAGATTACAG</gDNA_template>
            <first_frame> K  K  A  K  A  E  A  K  *  H  N  L  I  N  G  N  *  F  Q  C  F  I  K  T  H  S  R  I  F  S  I  F  L  T  *  S  F  S  T   : G  F  *  N  *  D  M  F  S  F  S  T  *  Y  W  T  E  V  R  I  *  G  T  V  L  G  Y  F  *  H  P  K  I  K  S  *  K  R  *  K   : D  E  A  Q  L  S  Y  F  R  C  F  D  Q  *  *  L  D  N  G  I  Q  R  G  R  C  Q  D  *  K  Y  W  P  P  K  F  G  S  S  F  G  T  L  S  R  S  L  Q  I  Q  N  E  E  I  C  G  S  E  N  A  H  S  K  I  *  G  R  P  *  G  I  C  S  R :   L  F  K  I  W  I  Q  Q  G  R  W  L  H  S  L  S  *  M  G  S  C  C  S  :  G  S  R  S  Y  W  *  F  Q  R  M  E  R  F  Q  P  H  D  G  E  G  P  V  W  C  L  E  Y  *  N  S  *  C  *  Q  *  A  S  H  S  T  Q  L  Q  S  *  V  P  F  Q  A  W  R  G  S  V  G  R  S  Y  P  C  L  D  K  V  C  H  C  R  R  H  K  V  C  S  T  I  *  W  C  L  L  G  P  T  A  F  *  K  :  V  Q  L  Q  I  P  S  P  F  Q  T  P  S  P  T  N  L  R  S  T  C  R  H  E  Q  L  R  A  T  C  K  F  V  S  *  V  C  R  *  C  F  T  S  N  *  G  K  *  L  *  Y  C  P  V  D  G  H  N  G  T  F  L  L  W  I  I  W  V  S  C  Y  K  L  F  C  C  E  Q  *  I  W  K  S  G  G  P  K  V  S  D  R  *  S  T  *  L  G  F  T  G  S  G  G  C  S  S  Q  S  C  K  Q  *  C  H  *  W  P  Q  W  L  *  Y  W  P  R  F  S  R  I  L  L  S  C  R  R  A  R  V  P  *  V  V  G  *  Q  A  V  Q  L  C  Q  L  G  G  S  S  F  P  S  F  Q  L  E  V  V  A  R  R  V  *  L  *  R  I  S  I  *  W  N  N  F  Y  V  V  C  S  S  W  N  Q  Y  G  V  Y  R  K  L  *  *  V  F  Q  R  G  Y  R  C  *  C  C  R  L  F  N  V  G  Q  *  S  D  S  Q  D  F  P  R  R  N  C  Y  C  R  R  C  F  W  Y  A  G  P  W  P  A  C  F  *  G  R  N  W  F  *  L  S  P  G  D  G  N  P  R  *  V  D  R  L  C  K  E  Q  E  *  *  R  L  V  H  E  G  S  N  I  E  F  D  K  *  E  I  Y  R  E  V  Y  S  I  C  *  E  P  *  S   : V  Y  C  R  *  Q  D  H  C  I  S  P  N  G  Q  R  D  V  F  W  H  V  L  L  D  R  C  F  S  C  C  *  S  R  N  C  A  S  Q   : D  D  P  L  F  H  N  G  L  G  R  R  G  V  P  Q  F  H  G  *  R   : V  W  P  S  *  V  D  *  L  P  *  R  G  Q  *  L  E  L  *  Q  M  *  T  P  V  E  P  R  G  *  S  T  L  E  I  Q   : V  H  E  R  I  *  *  S  Y  E  F  T  R  R  E  V  L  I  P  C  I  R  K  T  D  S  K  Q  H  R  *  *  *  *   : G  C  C  V  *  T  W  *  P  G  I  C  I  Q  L  P  P  K  *  H  I  R  R  :  V  *  S  W  M  *  L  A  R  E  V  Q  S  C  T  G  Q  *  C  L  G  I  W  W  P  W  K   : S  W  S  *  C  *  P  F  H  I  T  R  R  N  T  W  S  S  R  N  K  F  Q  W  S  S  K  F  L  Q  I  A  V  S  C  A  H  M  C   : G  L  L  Q  S  *  R  M  H  V  R  N  *  S  L  P  D  R  H  F  *  *  A  T  T  N  S  Q  Y  R  G  E  *  R  E  T  *  R  F  I  I  Y  K  Y  Q  *  H  R  S  D  C  C  S  F  C  *  G  E  R  Q  G  T  *  R  F  T  Y  L  *  A  S  L  V  M  L  F  K  L  T  E  V  I  R  M  Q  T  S  G  S  D  V  F  Y  V  G  D  L  S  P  R  M  L  P  S  G  W  *  H  F  L  C  K  L  L  A  S  N  K  F  T  G  C  K  *  K  K  C  I  C  M  Y  V  F  L  *  N  F  P  S  F  W  C  F  A  F  E  A  K  S  L  Y  V  I  R  R  L  R  T  I  T  Y  I  K  C  Y  *  *  I  R  L  Q </first_frame>
            <second_frame>  R  R  R  K  L  K  Q  S  S  I  I  *  S  M  E  I  N  F  N  V  L  S  K  P  I  R  G  S  F  P  F  S  S  P  R  V  S  P  R  :  A  S  R  T  K  I  C  F  P  S  Q  H  S  T  G  L  K  F  G  S  E  G  R  S  W  D  I  S  S  T  P  K  S  R  V  R  K  D  E  R  :  M  K  H  S  S  A  I  S  A  V  L  T  N  D  N  S  T  M  A  S  R  E  E  D  V  K  T  E  N  I  G  L  L  N  L  D  P  A  L  E  P  Y  L  D  H  F  R  Y  R  M  K  R  Y  V  D  Q  K  M  L  I  Q  K  Y  E  G  G  L  E  E  F  A  Q   : G  Y  L  K  F  G  F  N  R  E  D  G  C  I  V  Y  R  E  W  A  P  A  A  Q :   E  A  E  V  I  G  D  F  N  G  W  N  G  S  N  H  M  M  E  K  D  Q  F  G  V  W  S  I  R  I  P  D  V  D  S  K  P  A  I  P  H  N  S  R  V  K  F  R  F  K  H  G  E  G  A  W  V  D  R  I  P  A  W  I  K  Y  A  T  V  D  A  T  K  F  A  A  P  Y  D  G  V  Y  W  D  P  P  P  S  E  R :   Y  N  F  K  Y  P  R  P  S  K  P  R  A  P  R  I  Y  E  A  H  V  G  M  S  S  S  E  P  R  V  N  S  Y  R  E  F  A  D  D  V  L  P  R  I  K  A  N  N  Y  N  T  V  Q  L  M  A  I  M  E  H  S  Y  Y  G  S  F  G  Y  H  V  T  N  F  F  A  V  S  S  R  S  G  N  P  E  D  L  K  Y  L  I  D  K  A  H  S  L  G  L  Q  V  L  V  D  V  V  H  S  H  A  S  N  N  V  T  D  G  L  N  G  F  D  I  G  Q  G  S  Q  E  S  Y  F  H  A  G  E  R  G  Y  H  K  L  W  D  S  R  L  F  N  Y  A  N  W  E  V  L  R  F  L  L  S  N  L  R  W  W  L  E  E  Y  N  F  D  G  F  R  F  D  G  I  T  S  M  L  Y  V  H  H  G  I  N  M  G  F  T  G  N  Y  N  E  Y  F  S  E  A  T  D  V  D  A  V  V  Y  L  M  L  A  N  N  L  I  H  K  I  F  P  D  A  T  V  I  A  E  D  V  S  G  M  P  G  L  G  R  H  V  S  E  G  G  I  G  F  D  Y  R  L  A  M  A  I  P  D  K  W  I  D  Y  V  K  N  K  N  D  E  D  W  S  M  K  E  V  T  S  S  L  T  N  R  R  Y  T  E  K  C  I  A  Y  A  E  S  H  D  Q  :  S  I  V  G  D  K  T  I  A  F  L  L  M  D  K  E  M  Y  S  G  M  S  C  L  T  D  A  S  P  V  V  D  R  G  I  A  L  H  K  :  M  I  H  F  F  T  M  A  L  G  G  E  G  Y  L  N  F  M  G  N  E  :  F  G  H  P  E  W  I  D  F  P  R  E  G  N  N  W  S  Y  D  K  C  R  R  Q  W  N  L  A  D  S  Q  H  L  R  Y  K  :  F  M  N  A  F  D  R  A  M  N  S  L  D  E  K  F  S  F  L  A  S  G  K  Q  I  V  S  S  I  D  D  D  N  K  :  V  V  V  F  E  R  G  D  L  V  F  V  F  N  F  H  P  N  N  T  Y  E  G :   Y  K  V  G  C  D  L  P  G  K  Y  R  V  A  L  D  S  D  A  W  E  F  G  G  H  G  R  :  V  G  H  D  V  D  H  F  T  S  P  E  G  I  P  G  V  P  E  T  N  F  N  G  R  P  N  S  F  K  L  L  S  P  A  H  T  C  V  :  A  Y  Y  R  V  D  E  C  M  S  E  T  E  V  Y  Q  T  D  I  S  N  E  L  L  P  T  A  N  I  E  E  S  D  E  K  L  K  D  S  L  S  T  N  I  S  N  I  G  Q  T  V  V  A  S  V  E  E  R  D  K  E  L  K  D  S  P  I  C  K  H  H  *  *  C  C  S  S  *  L  R  *  F  G  C  K  R  L  D  Q  M  S  S  T  L  V  I  L  V  R  A  C  C  L  Q  G  G  S  I  S  S  A  N  Y  *  H  P  I  N  L  L  V  V  N  R  K  N  A  F  A  C  M  C  S  S  E  I  F  P  V  F  G  A  L  P  L  K  P  S  L  Y  M  *  *  E  D  *  E  Q  S  H  I  *  N  V  T  S  R  L  D  Y   </second_frame>
            <third_frame>   E  G  E  S  *  S  K  V  A  *  F  D  Q  W  K  L  I  S  M  F  Y  Q  N  P  F  E  D  L  F  H  F  P  H  L  E  F  L  H  G :   L  L  E  L  R  Y  V  F  L  L  N  I  V  L  D  *  S  S  D  L  R  D  G  L  G  I  F  L  A  P  Q  N  Q  E  L  E  K  M  K  G :   *  S  T  A  Q  L  F  P  L  F  *  P  M  I  T  R  Q  W  H  P  E  R  K  M  S  R  L  K  I  L  A  S  *  I  W  I  Q  L  W  N  L  I  *  I  T  S  D  T  E  *  R  D  M  W  I  R  K  C  S  F  K  N  M  R  E  A  L  R  N  L  L  K  :  V  I  *  N  L  D  S  T  G  K  M  V  A  *  S  I  V  N  G  L  L  L  L   : R  K  Q  K  L  L  V  I  S  T  D  G  T  V  P  T  T  *  W  R  R  T  S  L  V  F  G  V  L  E  F  L  M  L  T  V  S  Q  P  F  H  T  T  P  E  L  S  S  V  S  S  M  A  R  E  R  G  *  I  V  S  L  L  G  *  S  M  P  L  *  T  P  Q  S  L  Q  H  H  M  M  V  S  T  G  T  H  R  L  L  K   : G  T  T  S  N  T  L  A  L  P  N  P  E  P  H  E  S  T  K  H  M  S  A  *  A  A  Q  S  H  V  *  I  R  I  V  S  L  Q  M  M  F  Y  L  E  L  R  Q  I  T  I  I  L  S  S  *  W  P  *  W  N  I  L  T  M  D  H  L  G  I  M  L  Q  T  F  L  L  *  A  V  D  L  E  I  R  R  T  *  S  I  *  *  I  K  H  I  A  W  V  Y  R  F  W  W  M  *  F  T  V  M  Q  A  I  M  S  L  M  A  S  M  A  L  I  L  A  K  V  L  K  N  P  T  F  M  P  E  S  E  G  T  I  S  C  G  I  A  G  C  S  T  M  P  I  G  R  F  F  V  S  F  F  P  T  *  G  G  G  *  K  S  I  T  L  T  D  F  D  L  M  E  *  L  L  C  C  M  F  I  M  E  S  I  W  G  L  Q  E  T  I  M  S  I  S  A  R  L  Q  M  L  M  L  S  S  I  *  C  W  P  I  I  *  F  T  R  F  S  Q  T  Q  L  L  L  P  K  M  F  L  V  C  R  A  L  A  G  M  F  L  R  E  E  L  V  L  I  I  A  W  R  W  Q  S  Q  I  S  G  *  I  M  *  R  T  R  M  M  K  I  G  P  *  R  K  *  H  R  V  *  Q  I  G  D  I  Q  R  S  V  *  H  M  L  R  A  M  I  S :   L  L  S  V  T  R  P  L  H  F  S  *  W  T  K  R  C  I  L  A  C  L  A  *  Q  M  L  L  L  L  L  I  E  E  L  R  F  T  R :   *  S  T  F  S  Q  W  P  W  E  E  R  G  T  S  I  S  W  V  T  S :   L  A  I  L  S  G  L  T  S  L  E  R  A  I  I  G  V  M  T  N  V  D  A  S  G  T  S  R  I  V  N  T  *  D  T  S :   S  *  T  H  L  I  E  L  *  I  H  S  T  R  S  S  H  S  L  H  Q  E  N  R  *  *  A  A  S  M  M  I  I  R :   L  L  C  L  N  V  V  T  W  Y  L  Y  S  T  S  T  Q  I  T  H  T  K   : G  I  K  L  D  V  T  C  Q  G  S  T  E  L  H  W  T  V  M  L  G  N  L  V  A  M  E  E :   L  V  M  M  L  T  I  S  H  H  Q  K  E  Y  L  E  F  Q  K  Q  I  S  M  V  V  Q  I  P  S  N  C  C  L  L  R  T  H  V  W :   L  I  T  E  L  T  N  A  C  Q  K  L  K  F  T  R  Q  T  F  L  M  S  Y  Y  Q  Q  P  I  S  R  R  V  T  R  N  L  K  I  H  Y  L  Q  I  S  V  T  S  V  R  L  L  *  L  L  L  R  R  E  T  R  N  L  K  I  H  L  S  V  S  I  I  S  D  V  V  Q  A  D  *  G  D  S  D  A  N  V  W  I  R  C  L  L  R  W  *  S  *  S  A  H  V  A  F  R  V  V  A  F  P  L  Q  I  I  S  I  Q  *  I  Y  W  L  *  I  E  K  M  H  L  H  V  C  V  P  L  K  F  S  Q  F  L  V  L  C  L  *  S  Q  V  S  I  C  N  K  K  T  K  N  N  H  I  Y  K  M  L  L  V  D  *  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51881" stop="51801"/>
                    <exon start="50564" stop="50445"/>
                    <exon start="50124" stop="49908"/>
                    <exon start="49416" stop="49347"/>
                    <exon start="49202" stop="48933"/>
                    <exon start="48717" stop="47811"/>
                    <exon start="47615" stop="47499"/>
                    <exon start="47303" stop="47241"/>
                    <exon start="46946" stop="46839"/>
                    <exon start="46469" stop="46368"/>
                    <exon start="46195" stop="46128"/>
                    <exon start="45985" stop="45904"/>
                    <exon start="45667" stop="45551"/>
                    <exon start="44763" stop="44548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2535</number_coding_nucleotides>
                  <number_encoded_amino_acids>845</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMEINFNVLSKPIRGSFPFSSPRVSPRASRTKICFPSQHSTGLKFGSEGRSWDISSTPKSRVRKDERMKHSSAISAVLTNDNSTMASREEDVKTENIGLLNLDPALEPYLDHFRYRMKRYVDQKMLIQKYEGGLEEFAQGYLKFGFNREDGCIVYREWAPAAQEAEVIGDFNGWNGSNHMMEKDQFGVWSIRIPDVDSKPAIPHNSRVKFRFKHGEGAWVDRIPAWIKYATVDATKFAAPYDGVYWDPPPSERYNFKYPRPSKPRAPRIYEAHVGMSSSEPRVNSYREFADDVLPRIKANNYNTVQLMAIMEHSYYGSFGYHVTNFFAVSSRSGNPEDLKYLIDKAHSLGLQVLVDVVHSHASNNVTDGLNGFDIGQGSQESYFHAGERGYHKLWDSRLFNYANWEVLRFLLSNLRWWLEEYNFDGFRFDGITSMLYVHHGINMGFTGNYNEYFSEATDVDAVVYLMLANNLIHKIFPDATVIAEDVSGMPGLGRHVSEGGIGFDYRLAMAIPDKWIDYVKNKNDEDWSMKEVTSSLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYSGMSCLTDASPVVDRGIALHKMIHFFTMALGGEGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWNLADSQHLRYKFMNAFDRAMNSLDEKFSFLASGKQIVSSIDDDNKVVVFERGDLVFVFNFHPNNTYEGYKVGCDLPGKYRVALDSDAWEFGGHGRVGHDVDHFTSPEGIPGVPETNFNGRPNSFKLLSPAHTCVAYYRVDECMSETEVYQTDISNELLPTANIEESDEKLKDSLSTNISNIGQTVVASVEERDKELKDSPICKHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51918" e_stop="51801"/>
            <exon e_start="50564" e_stop="50445"/>
            <exon e_start="50124" e_stop="49908"/>
            <exon e_start="49416" e_stop="49347"/>
            <exon e_start="49202" e_stop="48933"/>
            <exon e_start="48717" e_stop="47742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.150" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51918" e_stop="51801" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.338">
            <gDNA_intron_boundary i_start="51800" i_stop="50565" i_length="1236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50564" e_stop="50445" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.861" acc_prob="0.967">
            <gDNA_intron_boundary i_start="50444" i_stop="50125" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50124" e_stop="49908" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.697" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49907" i_stop="49417" i_length="491"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49416" e_stop="49347" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49346" i_stop="49203" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49202" e_stop="48933" e_length="270"/>
          </exon>
          <intron i_serial="5" don_prob="0.150" acc_prob="0.971">
            <gDNA_intron_boundary i_start="48932" i_stop="48718" i_length="215"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="48717" e_stop="47742" e_length="976"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51918" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="48933"/>
              <exon start="48717" stop="48698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51915" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="48977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51911" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51908" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49908"/>
              <exon start="49416" stop="49347"/>
              <exon start="49202" stop="49096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51907" stop="51801"/>
              <exon start="50564" stop="50445"/>
              <exon start="50124" stop="49936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49347"/>
              <exon start="49202" stop="48999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49075" stop="48933"/>
              <exon start="48717" stop="48268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48403" stop="48133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48402" stop="47893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48344" stop="47847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48344" stop="47899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48343" stop="48005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48326" stop="47858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48280" stop="47742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGGCGAAAGCTGAAGCAAAGTAGCATAATTTGATCAATGGAAATTAATTTCAATGTTTTATCAAAACCCATTCGAGGATCTTTTCCATTTTCCTCACCTAGAGTTTCTCCACGG : GCTTCTAGAACTAAGATATGTTTTCCTTCTCAACATAGTACTGGACTGAAGTTCGGATCTGAGGGACGGTCTTGGGATATTTCTAGCACCCCAAAATCAAGAGTTAGAAAAGATGAAAGG : ATGAAGCACAGCTCAGCTATTTCCGCTGTTTTGACCAATGATAACTCGACAATGGCATCCAGAGAGGAAGATGTCAAGACTGAAAATATTGGCCTCCTAAATTTGGATCCAGCTTTGGAACCTTATCTAGATCACTTCAGATACAGAATGAAGAGATATGTGGATCAGAAAATGCTCATTCAAAAATATGAGGGAGGCCTTGAGGAATTTGCTCAAG : GTTATTTAAAATTTGGATTCAACAGGGAAGATGGTTGCATAGTCTATCGTGAATGGGCTCCTGCTGCTCA : GGAAGCAGAAGTTATTGGTGATTTCAACGGATGGAACGGTTCCAACCACATGATGGAGAAGGACCAGTTTGGTGTTTGGAGTATTAGAATTCCTGATGTTGACAGTAAGCCAGCCATTCCACACAACTCCAGAGTTAAGTTCCGTTTCAAGCATGGCGAGGGAGCGTGGGTAGATCGTATCCCTGCTTGGATAAAGTATGCCACTGTAGACGCCACAAAGTTTGCAGCACCATATGATGGTGTCTACTGGGACCCACCGCCTTCTGAAAG : GTACAACTTCAAATACCCTCGCCCTTCCAAACCCCGAGCCCCACGAATCTACGAAGCACATGTCGGCATGAGCAGCTCAGAGCCACGTGTAAATTCGTATCGTGAGTTTGCAGATGATGTTTTACCTCGAATTAAGGCAAATAACTATAATACTGTCCAGTTGATGGCCATAATGGAACATTCTTACTATGGATCATTTGGGTATCATGTTACAAACTTTTTTGCTGTGAGCAGTAGATCTGGAAATCCGGAGGACCTAAAGTATCTGATAGATAAAGCACATAGCTTGGGTTTACAGGTTCTGGTGGATGTAGTTCACAGTCATGCAAGCAATAATGTCACTGATGGCCTCAATGGCTTTGATATTGGCCAAGGTTCTCAAGAATCCTACTTTCATGCCGGAGAGCGAGGGTACCATAAGTTGTGGGATAGCAGGCTGTTCAACTATGCCAATTGGGAGGTTCTTCGTTTCCTTCTTTCCAACTTGAGGTGGTGGCTAGAAGAGTATAACTTTGACGGATTTCGATTTGATGGAATAACTTCTATGTTGTATGTTCATCATGGAATCAATATGGGGTTTACAGGAAACTATAATGAGTATTTCAGCGAGGCTACAGATGTTGATGCTGTCGTCTATTTAATGTTGGCCAATAATCTGATTCACAAGATTTTCCCAGACGCAACTGTTATTGCCGAAGATGTTTCTGGTATGCCGGGCCTTGGCCGGCATGTTTCTGAGGGAGGAATTGGTTTTGATTATCGCCTGGCGATGGCAATCCCAGATAAGTGGATAGATTATGTAAAGAACAAGAATGATGAAGATTGGTCCATGAAGGAAGTAACATCGAGTTTGACAAATAGGAGATATACAGAGAAGTGTATAGCATATGCTGAGAGCCATGATCAGGTATTTTAAATTTATTTCTACAGCAAAATAATTCTCAGAACAATTGCTAGATAGAACCCAAATATACTT</gDNA_template>
            <first_frame> K  K  A  K  A  E  A  K  *  H  N  L  I  N  G  N  *  F  Q  C  F  I  K  T  H  S  R  I  F  S  I  F  L  T  *  S  F  S  T   : G  F  *  N  *  D  M  F  S  F  S  T  *  Y  W  T  E  V  R  I  *  G  T  V  L  G  Y  F  *  H  P  K  I  K  S  *  K  R  *  K   : D  E  A  Q  L  S  Y  F  R  C  F  D  Q  *  *  L  D  N  G  I  Q  R  G  R  C  Q  D  *  K  Y  W  P  P  K  F  G  S  S  F  G  T  L  S  R  S  L  Q  I  Q  N  E  E  I  C  G  S  E  N  A  H  S  K  I  *  G  R  P  *  G  I  C  S  R :   L  F  K  I  W  I  Q  Q  G  R  W  L  H  S  L  S  *  M  G  S  C  C  S  :  G  S  R  S  Y  W  *  F  Q  R  M  E  R  F  Q  P  H  D  G  E  G  P  V  W  C  L  E  Y  *  N  S  *  C  *  Q  *  A  S  H  S  T  Q  L  Q  S  *  V  P  F  Q  A  W  R  G  S  V  G  R  S  Y  P  C  L  D  K  V  C  H  C  R  R  H  K  V  C  S  T  I  *  W  C  L  L  G  P  T  A  F  *  K  :  V  Q  L  Q  I  P  S  P  F  Q  T  P  S  P  T  N  L  R  S  T  C  R  H  E  Q  L  R  A  T  C  K  F  V  S  *  V  C  R  *  C  F  T  S  N  *  G  K  *  L  *  Y  C  P  V  D  G  H  N  G  T  F  L  L  W  I  I  W  V  S  C  Y  K  L  F  C  C  E  Q  *  I  W  K  S  G  G  P  K  V  S  D  R  *  S  T  *  L  G  F  T  G  S  G  G  C  S  S  Q  S  C  K  Q  *  C  H  *  W  P  Q  W  L  *  Y  W  P  R  F  S  R  I  L  L  S  C  R  R  A  R  V  P  *  V  V  G  *  Q  A  V  Q  L  C  Q  L  G  G  S  S  F  P  S  F  Q  L  E  V  V  A  R  R  V  *  L  *  R  I  S  I  *  W  N  N  F  Y  V  V  C  S  S  W  N  Q  Y  G  V  Y  R  K  L  *  *  V  F  Q  R  G  Y  R  C  *  C  C  R  L  F  N  V  G  Q  *  S  D  S  Q  D  F  P  R  R  N  C  Y  C  R  R  C  F  W  Y  A  G  P  W  P  A  C  F  *  G  R  N  W  F  *  L  S  P  G  D  G  N  P  R  *  V  D  R  L  C  K  E  Q  E  *  *  R  L  V  H  E  G  S  N  I  E  F  D  K  *  E  I  Y  R  E  V  Y  S  I  C  *  E  P  *  S  G  I  L  N  L  F  L  Q  Q  N  N  S  Q  N  N  C  *  I  E  P  K  Y  T  </first_frame>
            <second_frame>  R  R  R  K  L  K  Q  S  S  I  I  *  S  M  E  I  N  F  N  V  L  S  K  P  I  R  G  S  F  P  F  S  S  P  R  V  S  P  R  :  A  S  R  T  K  I  C  F  P  S  Q  H  S  T  G  L  K  F  G  S  E  G  R  S  W  D  I  S  S  T  P  K  S  R  V  R  K  D  E  R  :  M  K  H  S  S  A  I  S  A  V  L  T  N  D  N  S  T  M  A  S  R  E  E  D  V  K  T  E  N  I  G  L  L  N  L  D  P  A  L  E  P  Y  L  D  H  F  R  Y  R  M  K  R  Y  V  D  Q  K  M  L  I  Q  K  Y  E  G  G  L  E  E  F  A  Q   : G  Y  L  K  F  G  F  N  R  E  D  G  C  I  V  Y  R  E  W  A  P  A  A  Q :   E  A  E  V  I  G  D  F  N  G  W  N  G  S  N  H  M  M  E  K  D  Q  F  G  V  W  S  I  R  I  P  D  V  D  S  K  P  A  I  P  H  N  S  R  V  K  F  R  F  K  H  G  E  G  A  W  V  D  R  I  P  A  W  I  K  Y  A  T  V  D  A  T  K  F  A  A  P  Y  D  G  V  Y  W  D  P  P  P  S  E  R :   Y  N  F  K  Y  P  R  P  S  K  P  R  A  P  R  I  Y  E  A  H  V  G  M  S  S  S  E  P  R  V  N  S  Y  R  E  F  A  D  D  V  L  P  R  I  K  A  N  N  Y  N  T  V  Q  L  M  A  I  M  E  H  S  Y  Y  G  S  F  G  Y  H  V  T  N  F  F  A  V  S  S  R  S  G  N  P  E  D  L  K  Y  L  I  D  K  A  H  S  L  G  L  Q  V  L  V  D  V  V  H  S  H  A  S  N  N  V  T  D  G  L  N  G  F  D  I  G  Q  G  S  Q  E  S  Y  F  H  A  G  E  R  G  Y  H  K  L  W  D  S  R  L  F  N  Y  A  N  W  E  V  L  R  F  L  L  S  N  L  R  W  W  L  E  E  Y  N  F  D  G  F  R  F  D  G  I  T  S  M  L  Y  V  H  H  G  I  N  M  G  F  T  G  N  Y  N  E  Y  F  S  E  A  T  D  V  D  A  V  V  Y  L  M  L  A  N  N  L  I  H  K  I  F  P  D  A  T  V  I  A  E  D  V  S  G  M  P  G  L  G  R  H  V  S  E  G  G  I  G  F  D  Y  R  L  A  M  A  I  P  D  K  W  I  D  Y  V  K  N  K  N  D  E  D  W  S  M  K  E  V  T  S  S  L  T  N  R  R  Y  T  E  K  C  I  A  Y  A  E  S  H  D  Q  V  F  *  I  Y  F  Y  S  K  I  I  L  R  T  I  A  R  *  N  P  N  I  L </second_frame>
            <third_frame>   E  G  E  S  *  S  K  V  A  *  F  D  Q  W  K  L  I  S  M  F  Y  Q  N  P  F  E  D  L  F  H  F  P  H  L  E  F  L  H  G :   L  L  E  L  R  Y  V  F  L  L  N  I  V  L  D  *  S  S  D  L  R  D  G  L  G  I  F  L  A  P  Q  N  Q  E  L  E  K  M  K  G :   *  S  T  A  Q  L  F  P  L  F  *  P  M  I  T  R  Q  W  H  P  E  R  K  M  S  R  L  K  I  L  A  S  *  I  W  I  Q  L  W  N  L  I  *  I  T  S  D  T  E  *  R  D  M  W  I  R  K  C  S  F  K  N  M  R  E  A  L  R  N  L  L  K  :  V  I  *  N  L  D  S  T  G  K  M  V  A  *  S  I  V  N  G  L  L  L  L   : R  K  Q  K  L  L  V  I  S  T  D  G  T  V  P  T  T  *  W  R  R  T  S  L  V  F  G  V  L  E  F  L  M  L  T  V  S  Q  P  F  H  T  T  P  E  L  S  S  V  S  S  M  A  R  E  R  G  *  I  V  S  L  L  G  *  S  M  P  L  *  T  P  Q  S  L  Q  H  H  M  M  V  S  T  G  T  H  R  L  L  K   : G  T  T  S  N  T  L  A  L  P  N  P  E  P  H  E  S  T  K  H  M  S  A  *  A  A  Q  S  H  V  *  I  R  I  V  S  L  Q  M  M  F  Y  L  E  L  R  Q  I  T  I  I  L  S  S  *  W  P  *  W  N  I  L  T  M  D  H  L  G  I  M  L  Q  T  F  L  L  *  A  V  D  L  E  I  R  R  T  *  S  I  *  *  I  K  H  I  A  W  V  Y  R  F  W  W  M  *  F  T  V  M  Q  A  I  M  S  L  M  A  S  M  A  L  I  L  A  K  V  L  K  N  P  T  F  M  P  E  S  E  G  T  I  S  C  G  I  A  G  C  S  T  M  P  I  G  R  F  F  V  S  F  F  P  T  *  G  G  G  *  K  S  I  T  L  T  D  F  D  L  M  E  *  L  L  C  C  M  F  I  M  E  S  I  W  G  L  Q  E  T  I  M  S  I  S  A  R  L  Q  M  L  M  L  S  S  I  *  C  W  P  I  I  *  F  T  R  F  S  Q  T  Q  L  L  L  P  K  M  F  L  V  C  R  A  L  A  G  M  F  L  R  E  E  L  V  L  I  I  A  W  R  W  Q  S  Q  I  S  G  *  I  M  *  R  T  R  M  M  K  I  G  P  *  R  K  *  H  R  V  *  Q  I  G  D  I  Q  R  S  V  *  H  M  L  R  A  M  I  R  Y  F  K  F  I  S  T  A  K  *  F  S  E  Q  L  L  D  R  T  Q  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51881" stop="51801"/>
                    <exon start="50564" stop="50445"/>
                    <exon start="50124" stop="49908"/>
                    <exon start="49416" stop="49347"/>
                    <exon start="49202" stop="48933"/>
                    <exon start="48717" stop="47802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMEINFNVLSKPIRGSFPFSSPRVSPRASRTKICFPSQHSTGLKFGSEGRSWDISSTPKSRVRKDERMKHSSAISAVLTNDNSTMASREEDVKTENIGLLNLDPALEPYLDHFRYRMKRYVDQKMLIQKYEGGLEEFAQGYLKFGFNREDGCIVYREWAPAAQEAEVIGDFNGWNGSNHMMEKDQFGVWSIRIPDVDSKPAIPHNSRVKFRFKHGEGAWVDRIPAWIKYATVDATKFAAPYDGVYWDPPPSERYNFKYPRPSKPRAPRIYEAHVGMSSSEPRVNSYREFADDVLPRIKANNYNTVQLMAIMEHSYYGSFGYHVTNFFAVSSRSGNPEDLKYLIDKAHSLGLQVLVDVVHSHASNNVTDGLNGFDIGQGSQESYFHAGERGYHKLWDSRLFNYANWEVLRFLLSNLRWWLEEYNFDGFRFDGITSMLYVHHGINMGFTGNYNEYFSEATDVDAVVYLMLANNLIHKIFPDATVIAEDVSGMPGLGRHVSEGGIGFDYRLAMAIPDKWIDYVKNKNDEDWSMKEVTSSLTNRRYTEKCIAYAESHDQVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="57261" PGL_stop="53551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56821" e_stop="56543"/>
            <exon e_start="56220" e_stop="56008"/>
            <exon e_start="55903" e_stop="55856"/>
            <exon e_start="55741" e_stop="55683"/>
            <exon e_start="55458" e_stop="55332"/>
            <exon e_start="55207" e_stop="55133"/>
            <exon e_start="54961" e_stop="54881"/>
            <exon e_start="54451" e_stop="54383"/>
            <exon e_start="54201" e_stop="53551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.525" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56821" e_stop="56543" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.915">
            <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56220" e_stop="56008" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.901" acc_prob="0.970">
            <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55903" e_stop="55856" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55741" e_stop="55683" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.525">
            <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55458" e_stop="55332" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55207" e_stop="55133" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54961" e_stop="54881" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.684">
            <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54451" e_stop="54383" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="54201" e_stop="53551" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56821" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56820" stop="56635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56678" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366373" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56567" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="54087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56566" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55875" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55687" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54388" stop="54383"/>
              <exon start="54201" stop="53779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53967" stop="53551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAAGAAGGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG : CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG : TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG : GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG : ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG : AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG : GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG : CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG : GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAATG</gDNA_template>
            <first_frame> L  E  E  G  S  R  T  F  S  I  M  P  S  L  V  D  E  E  E  D  T  L  V  K  S  L  D  R  D  C  D  T  N  Y  *  S  L  L  Q  D  S  V  C  P  I  L  Q  V  I  S  S  I  P  S  C  K  L  I  E  E  T  C  E  R  I  F  S  M  H  F  D  Y  C  T  T  A  S  I  D  F  V  M  L  D  E  S  S  F  S  N  I  L  Q  :  H  T  D  L  T  V  T  S  E  E  R  V  L  N  A  I  L  L  W  C  L  Q  A  R  E  L  Y  G  W  E  A  V  N  E  L  M  V  N  S  T  P  E  M  L  F  G  E  R  L  E  S  L  N  E  F  L  H  L  V  R  F  P  L  L  S  P  D  L  L  N  K  :  F  E  Q  S  S  L  S  Q  Q  I  P  T  F  D  H  L  :  V  K  E  A  L  R  F  L  E  F  E  I  T  D  F  Q  G  N  Q  R :   F  Q  H  R  K  S  S  F  K  E  L  L  Y  I  C  D  G  D  S  N  G  V  L  Y  F  A  G  T  S  Y  G  K  H  Q  W  V  N  P  V  L  S  K  :  R  V  I  I  T  A  S  S  P  I  S  R  C  T  D  P  K  V  L  V  S  R  N  F  Q  :  G  T  S  V  A  G  P  Q  M  E  G  G  R  N  T  S  W  W  M  V  D  I  G  P  D  H  Q  :  L  M  C  N  Y  Y  T  L  R  Q  D  G  S  R  A  F  I  R  R  W  N  L  Q  :  G  S  L  D  G  K  S  W  T  N  L  R  V  H  E  N  D  Q  T  I  C  K  P  G  Q  F  A  S  W  P  V  T  G  S  N  A  L  L  P  F  R  F  F  R  V  L  M  T  G  P  T  T  D  D  T  N  P  W  N  C  C  I  C  F  L  E  L  Y  G  Y  F  R  *  L  G  V  G  L  N  I  S  F  I  F  L  H  E  T  L  H  L  Q  S  K  C  C  M  V  F  V  F  L  N  D  V  Y  S  V  V  L  S  S  L  L  L  P  V  T  Y  F  *  V  Y  D  H  V  *  Y  Q  N  M  N  S  T  S  I  I  Y  I  K  I  A  S  T  F  R  V  H  D  H  L  R  H  W  H  F  A  E  I  R  V  W  Y  I  *  H  *  F  *  *  F  L  L  R  I  H  S  K  Y  *  I  N  H  M  K  G  G  N  Y  I  L  T  L  A  P  A  K  A  L  V  Q  L  T  C  S  S  L  *  *  *  N  G  N  *  R  S  M </first_frame>
            <second_frame>  W  K  K  V  Q  E  L  F  L  L  C  Q  V  *  W  T  R  K  K  T  L  W  *  S  L  W  I  V  I  V  I  L  T  I  D  L  Y  C  R  I  Q  Y  A  Q  F  F  K  *  Y  H  R  F  P  H  V  S  S  L  K  K  P  V  R  G  Y  S  P  C  T  S  I  I  V  Q  L  Q  A  L  T  L  S  C  *  M  N  Q  V  L  A  I  S  F  S :   I  Q  I  *  Q  *  H  L  K  R  E  F  S  M  P  S  C  F  G  A  Y  K  Q  E  N  C  M  D  G  K  Q  *  T  N  *  W  *  I  Q  H  L  R  C  F  L  E  R  D  L  S  L  *  M  N  F  C  I  L  C  G  S  L  Y  F  H  L  I  C  *  I  S :   L  N  R  V  A  L  A  S  K  F  P  L  L  T  I  W :   L  K  R  H  *  D  F  W  N  L  R  S  P  I  F  K  A  T  R   : D  F  S  I  E  N  Q  V  L  R  S  C  S  T  Y  A  M  E  I  A  T  G  S  F  I  L  L  A  H  H  M  G  N  T  S  G  *  I  L  F  C  P  R :   E  *  L  S  R  L  V  A  P  F  Q  D  A  L  I  P  R  C  W  C  Q  G  T  S  R :   V  H  L  L  L  D  L  R  W  R  G  E  E  T  L  R  G  G  W  L  I  L  V  R  I  T  S :   S  C  V  T  T  T  H  *  D  R  M  D  Q  E  H  L  S  D  V  G  T  F  R :   A  L  W  M  G  K  A  G  Q  I  *  E  Y  M  R  M  I  K  L  F  A  S  Q  V  N  L  H  H  G  Q  L  L  V  Q  M  H  Y  F  L  S  D  S  F  E  F  S  *  P  V  L  L  Q  T  I  L  T  P  G  T  V  A  S  A  S  *  N  S  M  A  I  F  V  S  S  V  L  V  *  T  L  V  L  F  F  F  M  K  P  F  I  Y  S  Q  N  V  V  W  F  S  Y  F  S  M  M  F  T  V  *  C  C  H  L  Y  S  C  L  L  H  I  F  E  F  M  I  M  F  N  I  R  I  *  I  Q  H  L  L  Y  T  *  K  *  L  V  H  F  V  C  M  I  I  Y  V  I  G  I  L  Q  R  L  G  Y  G  I  S  D  I  N  F  S  N  F  C  Y  V  Y  I  V  N  I  E  L  I  T  *  K  V  E  I  I  F  *  L  W  H  Q  Q  K  H  W  C  S  *  P  V  V  H  F  N  N  K  M  V  I  N  G  Q   </second_frame>
            <third_frame>   G  R  R  F  K  N  F  F  Y  Y  A  K  F  S  G  R  G  R  R  H  F  G  K  V  F  G  S  *  L  *  Y  *  L  L  I  F  I  A  G  F  S  M  P  N  S  S  S  D  I  I  D  S  L  M  *  A  H  *  R  N  L  *  E  D  I  L  H  A  L  R  L  L  Y  N  C  K  H  *  L  C  H  V  R  *  I  K  F  *  Q  Y  P  S   : A  Y  R  F  N  S  D  I  *  R  E  S  S  Q  C  H  L  A  L  V  L  T  S  K  R  T  V  W  M  G  S  S  K  R  I  D  G  K  F  N  T  *  D  A  F  W  R  E  T  *  V  S  K  *  I  S  A  S  C  A  V  P  F  T  F  T  *  F  A  E  *   : V  *  T  E  *  P  *  P  A  N  S  H  F  *  P  S   : G  *  R  G  I  K  I  S  G  I  *  D  H  R  F  S  R  Q  P  E  :  I  S  A  *  K  I  K  F  *  G  A  A  L  H  M  R  W  R  *  Q  R  G  P  L  F  C  W  H  I  I  W  E  T  P  V  G  K  S  C  F  V  Q   : E  S  N  Y  H  G  *  *  P  H  F  K  M  H  *  S  Q  G  V  G  V  K  E  L  P   : G  Y  I  C  C  W  T  S  D  G  G  G  K  K  H  F  V  V  D  G  *  Y  W  S  G  S  P   : A  H  V  *  L  L  H  I  E  T  G  W  I  K  S  I  Y  Q  T  L  E  P  S   : G  L  F  G  W  E  K  L  D  K  S  E  S  T  *  E  *  S  N  Y  L  Q  A  R  S  I  C  I  M  A  S  Y  W  F  K  C  I  T  S  F  Q  I  L  S  S  S  H  D  R  S  Y  Y  R  R  Y  *  P  L  E  L  L  H  L  L  L  R  T  L  W  L  F  S  L  A  R  C  W  F  E  H  *  F  Y  F  S  S  *  N  P  S  F  T  V  K  M  L  Y  G  F  R  I  S  Q  *  C  L  Q  C  S  V  V  I  S  T  L  A  C  Y  I  F  L  S  L  *  S  C  L  I  S  E  Y  E  F  N  I  Y  Y  I  H  K  N  S  *  Y  I  S  C  A  *  S  S  T  S  L  A  F  C  R  D  *  G  M  V  Y  L  T  L  I  L  V  I  F  V  T  Y  T  *  *  I  L  N  *  S  H  E  R  W  K  L  Y  F  D  F  G  T  S  K  S  I  G  A  V  D  L  *  F  T  L  I  I  K  W  *  L  T  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56716" stop="56543"/>
                    <exon start="56220" stop="56008"/>
                    <exon start="55903" stop="55856"/>
                    <exon start="55741" stop="55683"/>
                    <exon start="55458" stop="55332"/>
                    <exon start="55207" stop="55133"/>
                    <exon start="54961" stop="54881"/>
                    <exon start="54451" stop="54383"/>
                    <exon start="54201" stop="53983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLQDSVCPILQVISSIPSCKLIEETCERIFSMHFDYCTTASIDFVMLDESSFSNILQHTDLTVTSEERVLNAILLWCLQARELYGWEAVNELMVNSTPEMLFGERLESLNEFLHLVRFPLLSPDLLNKFEQSSLSQQIPTFDHLVKEALRFLEFEITDFQGNQRFQHRKSSFKELLYICDGDSNGVLYFAGTSYGKHQWVNPVLSKRVIITASSPISRCTDPKVLVSRNFQGTSVAGPQMEGGRNTSWWMVDIGPDHQLMCNYYTLRQDGSRAFIRRWNLQGSLDGKSWTNLRVHENDQTICKPGQFASWPVTGSNALLPFRFFRVLMTGPTTDDTNPWNCCICFLELYGYFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57261" e_stop="57048"/>
            <exon e_start="56837" e_stop="56812"/>
            <exon e_start="56704" e_stop="56543"/>
            <exon e_start="56220" e_stop="56008"/>
            <exon e_start="55903" e_stop="55856"/>
            <exon e_start="55741" e_stop="55683"/>
            <exon e_start="55458" e_stop="55332"/>
            <exon e_start="55207" e_stop="55133"/>
            <exon e_start="54961" e_stop="54881"/>
            <exon e_start="54451" e_stop="54383"/>
            <exon e_start="54201" e_stop="53551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.525" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57261" e_stop="57048" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="57047" i_stop="56838" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56837" e_stop="56812" e_length="26"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="56811" i_stop="56705" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56704" e_stop="56543" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.915">
            <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56220" e_stop="56008" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.970">
            <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55903" e_stop="55856" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55741" e_stop="55683" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.525">
            <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55458" e_stop="55332" e_length="127"/>
          </exon>
          <intron i_serial="7" don_prob="0.932" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55207" e_stop="55133" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54961" e_stop="54881" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.684">
            <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54451" e_stop="54383" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="54201" e_stop="53551" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57261" stop="57048"/>
              <exon start="56837" stop="56812"/>
              <exon start="56704" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56678" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366373" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56567" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="54087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56566" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55875" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55687" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54388" stop="54383"/>
              <exon start="54201" stop="53779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53967" stop="53551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGGAGAGTGTTTCTTCAGTGGTCTGCTTAAAAGATGTTCCTCTTGAGGCATTCAAGATTATGCTAGAATTCATGTACAGTGGAGAACTTAATAAAGAAGCTACTGCAGGAATCAATACCTTGTTACTTCAGCTACTTTTACTAGCCGATGAGTTTGGGGTGACACTTCTTCATCAGGAGTGCTGCAAAATACTTCTGGAGTGCCTCTCAGAG : GGATGGAGTTCTCCTATTGGAAGAAG : GATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG : CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG : TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG : GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG : ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG : AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG : GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG : CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG : GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAATG</gDNA_template>
            <first_frame> E  G  E  C  F  F  S  G  L  L  K  R  C  S  S  *  G  I  Q  D  Y  A  R  I  H  V  Q  W  R  T  *  *  R  S  Y  C  R  N  Q  Y  L  V  T  S  A  T  F  T  S  R  *  V  W  G  D  T  S  S  S  G  V  L  Q  N  T  S  G  V  P  L  R   : G  M  E  F  S  Y  W  K  K  :  D  S  V  C  P  I  L  Q  V  I  S  S  I  P  S  C  K  L  I  E  E  T  C  E  R  I  F  S  M  H  F  D  Y  C  T  T  A  S  I  D  F  V  M  L  D  E  S  S  F  S  N  I  L  Q  :  H  T  D  L  T  V  T  S  E  E  R  V  L  N  A  I  L  L  W  C  L  Q  A  R  E  L  Y  G  W  E  A  V  N  E  L  M  V  N  S  T  P  E  M  L  F  G  E  R  L  E  S  L  N  E  F  L  H  L  V  R  F  P  L  L  S  P  D  L  L  N  K  :  F  E  Q  S  S  L  S  Q  Q  I  P  T  F  D  H  L  :  V  K  E  A  L  R  F  L  E  F  E  I  T  D  F  Q  G  N  Q  R :   F  Q  H  R  K  S  S  F  K  E  L  L  Y  I  C  D  G  D  S  N  G  V  L  Y  F  A  G  T  S  Y  G  K  H  Q  W  V  N  P  V  L  S  K  :  R  V  I  I  T  A  S  S  P  I  S  R  C  T  D  P  K  V  L  V  S  R  N  F  Q  :  G  T  S  V  A  G  P  Q  M  E  G  G  R  N  T  S  W  W  M  V  D  I  G  P  D  H  Q  :  L  M  C  N  Y  Y  T  L  R  Q  D  G  S  R  A  F  I  R  R  W  N  L  Q  :  G  S  L  D  G  K  S  W  T  N  L  R  V  H  E  N  D  Q  T  I  C  K  P  G  Q  F  A  S  W  P  V  T  G  S  N  A  L  L  P  F  R  F  F  R  V  L  M  T  G  P  T  T  D  D  T  N  P  W  N  C  C  I  C  F  L  E  L  Y  G  Y  F  R  *  L  G  V  G  L  N  I  S  F  I  F  L  H  E  T  L  H  L  Q  S  K  C  C  M  V  F  V  F  L  N  D  V  Y  S  V  V  L  S  S  L  L  L  P  V  T  Y  F  *  V  Y  D  H  V  *  Y  Q  N  M  N  S  T  S  I  I  Y  I  K  I  A  S  T  F  R  V  H  D  H  L  R  H  W  H  F  A  E  I  R  V  W  Y  I  *  H  *  F  *  *  F  L  L  R  I  H  S  K  Y  *  I  N  H  M  K  G  G  N  Y  I  L  T  L  A  P  A  K  A  L  V  Q  L  T  C  S  S  L  *  *  *  N  G  N  *  R  S  M </first_frame>
            <second_frame>  R  E  S  V  S  S  V  V  C  L  K  D  V  P  L  E  A  F  K  I  M  L  E  F  M  Y  S  G  E  L  N  K  E  A  T  A  G  I  N  T  L  L  L  Q  L  L  L  L  A  D  E  F  G  V  T  L  L  H  Q  E  C  C  K  I  L  L  E  C  L  S  E  :  G  W  S  S  P  I  G  R  R :   I  Q  Y  A  Q  F  F  K  *  Y  H  R  F  P  H  V  S  S  L  K  K  P  V  R  G  Y  S  P  C  T  S  I  I  V  Q  L  Q  A  L  T  L  S  C  *  M  N  Q  V  L  A  I  S  F  S :   I  Q  I  *  Q  *  H  L  K  R  E  F  S  M  P  S  C  F  G  A  Y  K  Q  E  N  C  M  D  G  K  Q  *  T  N  *  W  *  I  Q  H  L  R  C  F  L  E  R  D  L  S  L  *  M  N  F  C  I  L  C  G  S  L  Y  F  H  L  I  C  *  I  S :   L  N  R  V  A  L  A  S  K  F  P  L  L  T  I  W :   L  K  R  H  *  D  F  W  N  L  R  S  P  I  F  K  A  T  R   : D  F  S  I  E  N  Q  V  L  R  S  C  S  T  Y  A  M  E  I  A  T  G  S  F  I  L  L  A  H  H  M  G  N  T  S  G  *  I  L  F  C  P  R :   E  *  L  S  R  L  V  A  P  F  Q  D  A  L  I  P  R  C  W  C  Q  G  T  S  R :   V  H  L  L  L  D  L  R  W  R  G  E  E  T  L  R  G  G  W  L  I  L  V  R  I  T  S :   S  C  V  T  T  T  H  *  D  R  M  D  Q  E  H  L  S  D  V  G  T  F  R :   A  L  W  M  G  K  A  G  Q  I  *  E  Y  M  R  M  I  K  L  F  A  S  Q  V  N  L  H  H  G  Q  L  L  V  Q  M  H  Y  F  L  S  D  S  F  E  F  S  *  P  V  L  L  Q  T  I  L  T  P  G  T  V  A  S  A  S  *  N  S  M  A  I  F  V  S  S  V  L  V  *  T  L  V  L  F  F  F  M  K  P  F  I  Y  S  Q  N  V  V  W  F  S  Y  F  S  M  M  F  T  V  *  C  C  H  L  Y  S  C  L  L  H  I  F  E  F  M  I  M  F  N  I  R  I  *  I  Q  H  L  L  Y  T  *  K  *  L  V  H  F  V  C  M  I  I  Y  V  I  G  I  L  Q  R  L  G  Y  G  I  S  D  I  N  F  S  N  F  C  Y  V  Y  I  V  N  I  E  L  I  T  *  K  V  E  I  I  F  *  L  W  H  Q  Q  K  H  W  C  S  *  P  V  V  H  F  N  N  K  M  V  I  N  G  Q   </second_frame>
            <third_frame>   G  R  V  F  L  Q  W  S  A  *  K  M  F  L  L  R  H  S  R  L  C  *  N  S  C  T  V  E  N  L  I  K  K  L  L  Q  E  S  I  P  C  Y  F  S  Y  F  Y  *  P  M  S  L  G  *  H  F  F  I  R  S  A  A  K  Y  F  W  S  A  S  Q  R :   D  G  V  L  L  L  E  E   : G  F  S  M  P  N  S  S  S  D  I  I  D  S  L  M  *  A  H  *  R  N  L  *  E  D  I  L  H  A  L  R  L  L  Y  N  C  K  H  *  L  C  H  V  R  *  I  K  F  *  Q  Y  P  S   : A  Y  R  F  N  S  D  I  *  R  E  S  S  Q  C  H  L  A  L  V  L  T  S  K  R  T  V  W  M  G  S  S  K  R  I  D  G  K  F  N  T  *  D  A  F  W  R  E  T  *  V  S  K  *  I  S  A  S  C  A  V  P  F  T  F  T  *  F  A  E  *   : V  *  T  E  *  P  *  P  A  N  S  H  F  *  P  S   : G  *  R  G  I  K  I  S  G  I  *  D  H  R  F  S  R  Q  P  E  :  I  S  A  *  K  I  K  F  *  G  A  A  L  H  M  R  W  R  *  Q  R  G  P  L  F  C  W  H  I  I  W  E  T  P  V  G  K  S  C  F  V  Q   : E  S  N  Y  H  G  *  *  P  H  F  K  M  H  *  S  Q  G  V  G  V  K  E  L  P   : G  Y  I  C  C  W  T  S  D  G  G  G  K  K  H  F  V  V  D  G  *  Y  W  S  G  S  P   : A  H  V  *  L  L  H  I  E  T  G  W  I  K  S  I  Y  Q  T  L  E  P  S   : G  L  F  G  W  E  K  L  D  K  S  E  S  T  *  E  *  S  N  Y  L  Q  A  R  S  I  C  I  M  A  S  Y  W  F  K  C  I  T  S  F  Q  I  L  S  S  S  H  D  R  S  Y  Y  R  R  Y  *  P  L  E  L  L  H  L  L  L  R  T  L  W  L  F  S  L  A  R  C  W  F  E  H  *  F  Y  F  S  S  *  N  P  S  F  T  V  K  M  L  Y  G  F  R  I  S  Q  *  C  L  Q  C  S  V  V  I  S  T  L  A  C  Y  I  F  L  S  L  *  S  C  L  I  S  E  Y  E  F  N  I  Y  Y  I  H  K  N  S  *  Y  I  S  C  A  *  S  S  T  S  L  A  F  C  R  D  *  G  M  V  Y  L  T  L  I  L  V  I  F  V  T  Y  T  *  *  I  L  N  *  S  H  E  R  W  K  L  Y  F  D  F  G  T  S  K  S  I  G  A  V  D  L  *  F  T  L  I  I  K  W  *  L  T  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57108" stop="57048"/>
                    <exon start="56837" stop="56812"/>
                    <exon start="56704" stop="56543"/>
                    <exon start="56220" stop="56008"/>
                    <exon start="55903" stop="55856"/>
                    <exon start="55741" stop="55683"/>
                    <exon start="55458" stop="55332"/>
                    <exon start="55207" stop="55133"/>
                    <exon start="54961" stop="54881"/>
                    <exon start="54451" stop="54383"/>
                    <exon start="54201" stop="53983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWGDTSSSGVLQNTSGVPLRGMEFSYWKKDSVCPILQVISSIPSCKLIEETCERIFSMHFDYCTTASIDFVMLDESSFSNILQHTDLTVTSEERVLNAILLWCLQARELYGWEAVNELMVNSTPEMLFGERLESLNEFLHLVRFPLLSPDLLNKFEQSSLSQQIPTFDHLVKEALRFLEFEITDFQGNQRFQHRKSSFKELLYICDGDSNGVLYFAGTSYGKHQWVNPVLSKRVIITASSPISRCTDPKVLVSRNFQGTSVAGPQMEGGRNTSWWMVDIGPDHQLMCNYYTLRQDGSRAFIRRWNLQGSLDGKSWTNLRVHENDQTICKPGQFASWPVTGSNALLPFRFFRVLMTGPTTDDTNPWNCCICFLELYGYFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="54963" e_stop="54881"/>
            <exon e_start="54451" e_stop="54383"/>
            <exon e_start="54201" e_stop="53551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.684" e_score="0.964"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="54963" e_stop="54881" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.684">
            <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54451" e_stop="54383" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="54201" e_stop="53551" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54963" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366372" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54388" stop="54383"/>
              <exon start="54201" stop="53779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53967" stop="53551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG : CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG : GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAATG</gDNA_template>
            <first_frame> R  V  H  L  L  L  D  L  R  W  R  G  E  E  T  L  R  G  G  W  L  I  L  V  R  I  T  S :   S  C  V  T  T  T  H  *  D  R  M  D  Q  E  H  L  S  D  V  G  T  F  R :   A  L  W  M  G  K  A  G  Q  I  *  E  Y  M  R  M  I  K  L  F  A  S  Q  V  N  L  H  H  G  Q  L  L  V  Q  M  H  Y  F  L  S  D  S  F  E  F  S  *  P  V  L  L  Q  T  I  L  T  P  G  T  V  A  S  A  S  *  N  S  M  A  I  F  V  S  S  V  L  V  *  T  L  V  L  F  F  F  M  K  P  F  I  Y  S  Q  N  V  V  W  F  S  Y  F  S  M  M  F  T  V  *  C  C  H  L  Y  S  C  L  L  H  I  F  E  F  M  I  M  F  N  I  R  I  *  I  Q  H  L  L  Y  T  *  K  *  L  V  H  F  V  C  M  I  I  Y  V  I  G  I  L  Q  R  L  G  Y  G  I  S  D  I  N  F  S  N  F  C  Y  V  Y  I  V  N  I  E  L  I  T  *  K  V  E  I  I  F  *  L  W  H  Q  Q  K  H  W  C  S  *  P  V  V  H  F  N  N  K  M  V  I  N  G  Q   </first_frame>
            <second_frame>  G  Y  I  C  C  W  T  S  D  G  G  G  K  K  H  F  V  V  D  G  *  Y  W  S  G  S  P   : A  H  V  *  L  L  H  I  E  T  G  W  I  K  S  I  Y  Q  T  L  E  P  S   : G  L  F  G  W  E  K  L  D  K  S  E  S  T  *  E  *  S  N  Y  L  Q  A  R  S  I  C  I  M  A  S  Y  W  F  K  C  I  T  S  F  Q  I  L  S  S  S  H  D  R  S  Y  Y  R  R  Y  *  P  L  E  L  L  H  L  L  L  R  T  L  W  L  F  S  L  A  R  C  W  F  E  H  *  F  Y  F  S  S  *  N  P  S  F  T  V  K  M  L  Y  G  F  R  I  S  Q  *  C  L  Q  C  S  V  V  I  S  T  L  A  C  Y  I  F  L  S  L  *  S  C  L  I  S  E  Y  E  F  N  I  Y  Y  I  H  K  N  S  *  Y  I  S  C  A  *  S  S  T  S  L  A  F  C  R  D  *  G  M  V  Y  L  T  L  I  L  V  I  F  V  T  Y  T  *  *  I  L  N  *  S  H  E  R  W  K  L  Y  F  D  F  G  T  S  K  S  I  G  A  V  D  L  *  F  T  L  I  I  K  W  *  L  T  V  N  </second_frame>
            <third_frame>   G  T  S  V  A  G  P  Q  M  E  G  G  R  N  T  S  W  W  M  V  D  I  G  P  D  H  Q  :  L  M  C  N  Y  Y  T  L  R  Q  D  G  S  R  A  F  I  R  R  W  N  L  Q  :  G  S  L  D  G  K  S  W  T  N  L  R  V  H  E  N  D  Q  T  I  C  K  P  G  Q  F  A  S  W  P  V  T  G  S  N  A  L  L  P  F  R  F  F  R  V  L  M  T  G  P  T  T  D  D  T  N  P  W  N  C  C  I  C  F  L  E  L  Y  G  Y  F  R  *  L  G  V  G  L  N  I  S  F  I  F  L  H  E  T  L  H  L  Q  S  K  C  C  M  V  F  V  F  L  N  D  V  Y  S  V  V  L  S  S  L  L  L  P  V  T  Y  F  *  V  Y  D  H  V  *  Y  Q  N  M  N  S  T  S  I  I  Y  I  K  I  A  S  T  F  R  V  H  D  H  L  R  H  W  H  F  A  E  I  R  V  W  Y  I  *  H  *  F  *  *  F  L  L  R  I  H  S  K  Y  *  I  N  H  M  K  G  G  N  Y  I  L  T  L  A  P  A  K  A  L  V  Q  L  T  C  S  S  L  *  *  *  N  G  N  *  R  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54961" stop="54881"/>
                    <exon start="54451" stop="54383"/>
                    <exon start="54201" stop="53983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTSVAGPQMEGGRNTSWWMVDIGPDHQLMCNYYTLRQDGSRAFIRRWNLQGSLDGKSWTNLRVHENDQTICKPGQFASWPVTGSNALLPFRFFRVLMTGPTTDDTNPWNCCICFLELYGYFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="55209" e_stop="55133"/>
            <exon e_start="54961" e_stop="54881"/>
            <exon e_start="54679" e_stop="54612"/>
            <exon e_start="54451" e_stop="54383"/>
            <exon e_start="54201" e_stop="53551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55209" e_stop="55133" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54961" e_stop="54881" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.341">
            <gDNA_intron_boundary i_start="54880" i_stop="54680" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54679" e_stop="54612" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.878" acc_prob="0.684">
            <gDNA_intron_boundary i_start="54611" i_stop="54452" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54451" e_stop="54383" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="54201" e_stop="53551" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55209" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54679" stop="54612"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54388" stop="54383"/>
              <exon start="54201" stop="53779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53967" stop="53551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG : GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG : GGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAA : CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG : GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAATG</gDNA_template>
            <first_frame> R  E  *  L  S  R  L  V  A  P  F  Q  D  A  L  I  P  R  C  W  C  Q  G  T  S  R :   V  H  L  L  L  D  L  R  W  R  G  E  E  T  L  R  G  G  W  L  I  L  V  R  I  T  R :   A  L  H  D  I  M  V  V  *  S  S  A  G  Q  Y  T  L  D  Q  D  I  E   : T  H  V  *  L  L  H  I  E  T  G  W  I  K  S  I  Y  Q  T  L  E  P  S   : G  L  F  G  W  E  K  L  D  K  S  E  S  T  *  E  *  S  N  Y  L  Q  A  R  S  I  C  I  M  A  S  Y  W  F  K  C  I  T  S  F  Q  I  L  S  S  S  H  D  R  S  Y  Y  R  R  Y  *  P  L  E  L  L  H  L  L  L  R  T  L  W  L  F  S  L  A  R  C  W  F  E  H  *  F  Y  F  S  S  *  N  P  S  F  T  V  K  M  L  Y  G  F  R  I  S  Q  *  C  L  Q  C  S  V  V  I  S  T  L  A  C  Y  I  F  L  S  L  *  S  C  L  I  S  E  Y  E  F  N  I  Y  Y  I  H  K  N  S  *  Y  I  S  C  A  *  S  S  T  S  L  A  F  C  R  D  *  G  M  V  Y  L  T  L  I  L  V  I  F  V  T  Y  T  *  *  I  L  N  *  S  H  E  R  W  K  L  Y  F  D  F  G  T  S  K  S  I  G  A  V  D  L  *  F  T  L  I  I  K  W  *  L  T  V  N  </first_frame>
            <second_frame>  E  S  N  Y  H  G  *  *  P  H  F  K  M  H  *  S  Q  G  V  G  V  K  E  L  P   : G  Y  I  C  C  W  T  S  D  G  G  G  K  K  H  F  V  V  D  G  *  Y  W  S  G  S  P   : G  H  C  T  I  S  W  L  S  R  V  V  L  V  S  I  P  W  I  K  I  L  K  :  L  M  C  N  Y  Y  T  L  R  Q  D  G  S  R  A  F  I  R  R  W  N  L  Q  :  G  S  L  D  G  K  S  W  T  N  L  R  V  H  E  N  D  Q  T  I  C  K  P  G  Q  F  A  S  W  P  V  T  G  S  N  A  L  L  P  F  R  F  F  R  V  L  M  T  G  P  T  T  D  D  T  N  P  W  N  C  C  I  C  F  L  E  L  Y  G  Y  F  R  *  L  G  V  G  L  N  I  S  F  I  F  L  H  E  T  L  H  L  Q  S  K  C  C  M  V  F  V  F  L  N  D  V  Y  S  V  V  L  S  S  L  L  L  P  V  T  Y  F  *  V  Y  D  H  V  *  Y  Q  N  M  N  S  T  S  I  I  Y  I  K  I  A  S  T  F  R  V  H  D  H  L  R  H  W  H  F  A  E  I  R  V  W  Y  I  *  H  *  F  *  *  F  L  L  R  I  H  S  K  Y  *  I  N  H  M  K  G  G  N  Y  I  L  T  L  A  P  A  K  A  L  V  Q  L  T  C  S  S  L  *  *  *  N  G  N  *  R  S  M </second_frame>
            <third_frame>   R  V  I  I  T  A  S  S  P  I  S  R  C  T  D  P  K  V  L  V  S  R  N  F  Q  :  G  T  S  V  A  G  P  Q  M  E  G  G  R  N  T  S  W  W  M  V  D  I  G  P  D  H  Q  :  G  I  A  R  Y  H  G  C  L  E  *  C  W  S  V  Y  L  G  S  R  Y  *  N :   S  C  V  T  T  T  H  *  D  R  M  D  Q  E  H  L  S  D  V  G  T  F  R :   A  L  W  M  G  K  A  G  Q  I  *  E  Y  M  R  M  I  K  L  F  A  S  Q  V  N  L  H  H  G  Q  L  L  V  Q  M  H  Y  F  L  S  D  S  F  E  F  S  *  P  V  L  L  Q  T  I  L  T  P  G  T  V  A  S  A  S  *  N  S  M  A  I  F  V  S  S  V  L  V  *  T  L  V  L  F  F  F  M  K  P  F  I  Y  S  Q  N  V  V  W  F  S  Y  F  S  M  M  F  T  V  *  C  C  H  L  Y  S  C  L  L  H  I  F  E  F  M  I  M  F  N  I  R  I  *  I  Q  H  L  L  Y  T  *  K  *  L  V  H  F  V  C  M  I  I  Y  V  I  G  I  L  Q  R  L  G  Y  G  I  S  D  I  N  F  S  N  F  C  Y  V  Y  I  V  N  I  E  L  I  T  *  K  V  E  I  I  F  *  L  W  H  Q  Q  K  H  W  C  S  *  P  V  V  H  F  N  N  K  M  V  I  N  G  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54899" stop="54881"/>
                    <exon start="54679" stop="54612"/>
                    <exon start="54451" stop="54383"/>
                    <exon start="54201" stop="53983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YWSGSPGHCTISWLSRVVLVSIPWIKILKLMCNYYTLRQDGSRAFIRRWNLQGSLDGKSWTNLRVHENDQTICKPGQFASWPVTGSNALLPFRFFRVLMTGPTTDDTNPWNCCICFLELYGYFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="58724" PGL_stop="58037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58724" e_stop="58037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58724" e_stop="58037" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58724" stop="58037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58700" stop="58290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCACCTGCCAGACATAAGTTATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTATCTCATAGCTGCTGATTCACTGCTACATTTGAACATTGTAGATTTTGGAGTCTGATCTCTGCTCATTGAAGTCTTTGAGCTTACAATATAAAGTGATGTCATTGGTGAGGCAATGTGAAGAGATCCTTGAGCGAATTATGTCTGATAAGCAACTCGTTGACTCAACTCAGCTTGTTGACATATTTTATCCAAGCTGGCTTCAATGCAGCAAAACTTTTCCTTATGGGTTGCCAATTAATAGAGAAAGGCTTGAA</gDNA_template>
            <first_frame> L  F  T  C  Q  T  *  V  I  L  F  F  M  H  F  F  S  T  S  T  L  D  I  L  R  *  V  P  S  F  R  Q  F  Q  I  I  M  L  P  L  I  V  C  L  T  L  D  N  M  P  I  A  F  S  L  L  S  F  R  N  *  E  Q  K  K  *  F  F  L  L  F  R  E  G  I  K  S  K  F  *  N  L  L  Y  V  S  F  V  Y  K  P  N  F  L  Y  F  C  I  S  S  Y  C  L  I  F  L  K  T  T  D  S  S  Q  I  L  N  Q  T  Y  Q  A  *  H  Y  A  Y  R  Y  K  F  A  R  Y  C  S  M  R  L  L  V  Y  L  N  I  Y  L  I  A  A  D  S  L  L  H  L  N  I  V  D  F  G  V  *  S  L  L  I  E  V  F  E  L  T  I  *  S  D  V  I  G  E  A  M  *  R  D  P  *  A  N  Y  V  *  *  A  T  R  *  L  N  S  A  C  *  H  I  L  S  K  L  A  S  M  Q  Q  N  F  S  L  W  V  A  N  *  *  R  K  A  *  </first_frame>
            <second_frame>  C  S  P  A  R  H  K  L  F  C  S  S  C  T  S  S  V  H  L  H  W  T  Y  S  G  E  S  H  L  S  G  N  F  K  L  L  C  F  H  *  L  S  A  *  L  W  I  T  C  L  L  L  F  H  C  *  V  S  G  T  K  N  R  K  N  S  S  F  Y  Y  S  E  K  E  L  N  Q  N  F  K  I  C  S  M  *  V  L  C  I  N  Q  I  F  F  I  F  V  F  L  P  I  V  *  F  F  *  R  L  L  T  P  A  K  S  *  I  K  R  T  K  R  D  I  M  R  I  D  I  N  L  Q  G  I  V  L  C  D  F  *  F  T  *  I  F  I  S  *  L  L  I  H  C  Y  I  *  T  L  *  I  L  E  S  D  L  C  S  L  K  S  L  S  L  Q  Y  K  V  M  S  L  V  R  Q  C  E  E  I  L  E  R  I  M  S  D  K  Q  L  V  D  S  T  Q  L  V  D  I  F  Y  P  S  W  L  Q  C  S  K  T  F  P  Y  G  L  P  I  N  R  E  R  L  E </second_frame>
            <third_frame>   V  H  L  P  D  I  S  Y  S  V  L  H  A  L  L  Q  Y  I  Y  T  G  H  T  Q  V  S  P  I  F  Q  A  I  S  N  Y  Y  A  S  T  N  C  L  L  N  F  G  *  H  A  Y  C  F  F  I  V  E  F  Q  E  L  R  T  E  K  I  V  L  F  T  I  Q  R  R  N  *  I  K  I  L  K  F  A  L  C  E  F  C  V  *  T  K  F  S  L  F  L  Y  F  F  L  L  S  N  F  S  K  D  Y  *  L  Q  P  N  L  K  S  N  V  P  S  V  T  L  C  V  *  I  *  I  C  K  V  L  F  Y  A  T  F  S  L  L  E  Y  L  S  H  S  C  *  F  T  A  T  F  E  H  C  R  F  W  S  L  I  S  A  H  *  S  L  *  A  Y  N  I  K  *  C  H  W  *  G  N  V  K  R  S  L  S  E  L  C  L  I  S  N  S  L  T  Q  L  S  L  L  T  Y  F  I  Q  A  G  F  N  A  A  K  L  F  L  M  G  C  Q  L  I  E  K  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58249" stop="58037"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILESDLCSLKSLSLQYKVMSLVRQCEEILERIMSDKQLVDSTQLVDIFYPSWLQCSKTFPYGLPINRERLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="61944" PGL_stop="61181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61944" e_stop="61932"/>
            <exon e_start="61831" e_stop="61653"/>
            <exon e_start="61566" e_stop="61181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61944" e_stop="61932" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61931" i_stop="61832" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61831" e_stop="61653" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.680" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.889">
            <gDNA_exon_boundary e_start="61566" e_stop="61181" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61944" stop="61932"/>
              <exon start="61831" stop="61653"/>
              <exon start="61566" stop="61368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61943" stop="61932"/>
              <exon start="61831" stop="61653"/>
              <exon start="61566" stop="61326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61793" stop="61653"/>
              <exon start="61566" stop="61224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61392" stop="61181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTGATAAGAAG : GTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT : GGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATAAGTTGCCCCAGGCTCTGGGGGGAAGGGGGGAGGGTGTTTGAGTTCTTTTGTTACCGAGAAAACTTTGTTTATGTTTTTTCATGTCATGTACATTGTTGGAATGTGAAATCTTGCTTTTCATACTTTTACTTGAATATATATATAT</gDNA_template>
            <first_frame> V  *  *  E   : G  G  A  S  V  I  L  L  D  R  A  M  S  S  G  V  *  N  A  S  V  P  T  I  N  A  C  S  C  C  Y  L  Y  C  T  M  H  S  R  C  V  *  G  V  E  *  N  L  *  E  A  *  Q  L  C  Q  R  S  T  F  :  G  M  L  K  I  D  G  L  F  P  S  E  G  S  N  W  E  T  Y  W  R  A  P  K  V  Q  H  F  *  I  W  L  C  Y  *  M  *  T  S  F  F  S  I  R  S  M  V  L  G  F  T  R  R  R  N  T  *  G  N  C  F  L  A  V  I  L  Y  V  F  S  F  F  N  A  I  V  D  E  Q  H  K  L  P  Q  A  L  G  G  R  G  E  G  V  *  V  L  L  L  P  R  K  L  C  L  C  F  F  M  S  C  T  L  L  E  C  E  I  L  L  F  I  L  L  L  E  Y  I  Y   </first_frame>
            <second_frame>  S  D  K  K  :  V  E  L  V  S  F  F  L  I  E  L  C  L  V  E  Y  E  M  L  R  F  P  P  S  M  L  A  A  A  A  I  F  T  A  Q  C  T  L  G  V  S  K  E  W  N  K  T  C  E  K  H  S  S  Y  V  K  D  Q  L  L :   E  C  S  K  L  M  V  C  F  H  Q  K  A  A  I  G  K  L  T  G  V  H  R  K  Y  S  T  S  K  Y  G  Y  A  T  R  C  E  P  A  S  F  L  L  E  A  W  F  *  D  S  L  G  G  G  T  H  E  E  T  A  S  L  Q  *  Y  Y  T  C  S  V  F  L  M  Q  L  L  M  S  N  I  S  C  P  R  L  W  G  E  G  G  R  V  F  E  F  F  C  Y  R  E  N  F  V  Y  V  F  S  C  H  V  H  C  W  N  V  K  S  C  F  S  Y  F  Y  L  N  I  Y  I  </second_frame>
            <third_frame>   L  I  R  R :   W  S  *  C  H  S  S  *  *  S  Y  V  *  W  S  M  K  C  F  G  S  H  H  Q  C  L  Q  L  L  L  S  L  L  H  N  A  L  S  V  C  L  R  S  G  I  K  P  V  R  S  I  A  A  M  S  K  I  N  F   : W  N  A  Q  N  *  W  F  V  S  I  R  R  Q  Q  L  G  N  L  L  A  C  T  E  S  T  A  L  L  N  M  A  M  L  L  D  V  N  Q  L  L  F  Y  *  K  H  G  F  R  I  H  *  E  E  E  H  M  R  K  L  L  P  C  S  N  I  I  R  V  Q  F  F  *  C  N  C  *  *  A  T  *  V  A  P  G  S  G  G  K  G  G  G  C  L  S  S  F  V  T  E  K  T  L  F  M  F  F  H  V  M  Y  I  V  G  M  *  N  L  A  F  H  T  F  T  *  I  Y  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61943" stop="61932"/>
                    <exon start="61831" stop="61653"/>
                    <exon start="61566" stop="61422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDKKVELVSFFLIELCLVEYEMLRFPPSMLAAAAIFTAQCTLGVSKEWNKTCEKHSSYVKDQLLECSKLMVCFHQKAAIGKLTGVHRKYSTSKYGYATRCEPASFLLEAWF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61373" stop="61182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYTCSVFLMQLLMSNISCPRLWGEGGRVFEFFCYRENFVYVFSCHVHCWNVKSCFSYFYLNIYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="64308" PGL_stop="63308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64308" e_stop="64082"/>
            <exon e_start="63940" e_stop="63881"/>
            <exon e_start="63781" e_stop="63640"/>
            <exon e_start="63542" e_stop="63483"/>
            <exon e_start="63352" e_stop="63308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.689" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64308" e_stop="64082" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.689" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64081" i_stop="63941" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63940" e_stop="63881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63880" i_stop="63782" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63781" e_stop="63640" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63639" i_stop="63543" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63542" e_stop="63483" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63482" i_stop="63353" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63352" e_stop="63308" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64308" stop="64082"/>
              <exon start="63940" stop="63881"/>
              <exon start="63781" stop="63640"/>
              <exon start="63542" stop="63483"/>
              <exon start="63352" stop="63308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCCCATGTTTACGATTCAATTTTATACACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAG : TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAG : GGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGA : AAACAAAGCCAGTGCTGCTAACAAGATCCCTCCTGTTCCGATTCATCGTCCAATCACAAG : GAAGTTAGCTGCGCAAATCGCAAGCAAACAGCATCAACCAGCAGT</gDNA_template>
            <first_frame> I  S  H  V  Y  D  S  I  L  Y  T  H  F  P  N  P  L  F  L  M  N  P  N  K  I  N  Q  *  R  N  I  F  I  F  E  N  L  *  L  V  S  W  G  S  S  I  T  S  L  *  S  I  S  G  I  F  L  G  C  F  T  S  K  I  G  S  F  S  S  S  V  D  Q  V  L  S :   E  D  G  W  I  R  *  E  L  P  R  S  D  *  A  F  K  S  S  R :   G  I  E  A  W  C  W  R  K  S  E  W  R  V  G  A  K  *  E  G  T  K  H  N  Q  *  E  C  D  G  S  S  P  I  T  L  C  C  C  P  Q  E  K  *  H  Y  *  :  K  Q  S  Q  C  C  *  Q  D  P  S  C  S  D  S  S  S  N  H  K  :  E  V  S  C  A  N  R  K  Q  T  A  S  T  S  S </first_frame>
            <second_frame>  Y  P  M  F  T  I  Q  F  Y  T  P  I  S  Q  I  L  S  F  *  *  T  L  T  R  L  I  S  R  G  T  F  L  F  L  K  I  F  D  *  F  H  G  V  L  Q  L  L  V  F  N  R  F  L  G  F  F  W  V  V  S  P  Q  R  S  D  L  F  H  L  V  W  I  K  F  S   : V  K  M  A  G  S  D  E  N  Y  P  G  V  I  R  P  S  N  L  Q   : G  G  L  R  P  G  V  G  G  K  V  N  G  G  L  G  Q  N  R  R  A  L  S  T  I  N  K  N  V  M  G  A  P  P  L  H  C  A  V  V  H  K  R  N  D  I  T  E :   N  K  A  S  A  A  N  K  I  P  P  V  P  I  H  R  P  I  T  R :   K  L  A  A  Q  I  A  S  K  Q  H  Q  P  A   </second_frame>
            <third_frame>   I  P  C  L  R  F  N  F  I  H  P  F  P  K  S  S  L  F  N  E  P  *  Q  D  *  S  V  E  E  H  F  Y  F  *  K  S  L  I  S  F  M  G  F  F  N  Y  *  S  L  I  D  F  W  D  F  F  G  L  F  H  L  K  D  R  I  F  F  I  *  C  G  S  S  S  Q  :  *  R  W  L  D  Q  M  R  I  T  Q  E  *  L  G  L  Q  I  F  K  :  G  D  *  G  L  V  L  E  E  K  *  M  E  G  W  G  K  I  G  G  H  *  A  Q  S  I  R  M  *  W  E  L  P  H  Y  T  V  L  L  S  T  R  E  M  T  L  L   : K  T  K  P  V  L  L  T  R  S  L  L  F  R  F  I  V  Q  S  Q   : G  S  *  L  R  K  S  Q  A  N  S  I  N  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64190" stop="64082"/>
                    <exon start="63940" stop="63881"/>
                    <exon start="63781" stop="63640"/>
                    <exon start="63542" stop="63483"/>
                    <exon start="63352" stop="63310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHGVLQLLVFNRFLGFFWVVSPQRSDLFHLVWIKFSVKMAGSDENYPGVIRPSNLQGGLRPGVGGKVNGGLGQNRRALSTINKNVMGAPPLHCAVVHKRNDITENKASAANKIPPVPIHRPITRKLAAQIASKQHQPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64267" e_stop="64082"/>
            <exon e_start="63940" e_stop="63881"/>
            <exon e_start="63781" e_stop="63527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.689" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="64267" e_stop="64082" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.689" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64081" i_stop="63941" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63940" e_stop="63881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63880" i_stop="63782" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63781" e_stop="63527" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64267" stop="64082"/>
              <exon start="63940" stop="63881"/>
              <exon start="63781" stop="63527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAG : TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAG : GGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCT</gDNA_template>
            <first_frame> K  S  S  L  F  N  E  P  *  Q  D  *  S  V  E  E  H  F  Y  F  *  K  S  L  I  S  F  M  G  F  F  N  Y  *  S  L  I  D  F  W  D  F  F  G  L  F  H  L  K  D  R  I  F  F  I  *  C  G  S  S  S  Q  :  *  R  W  L  D  Q  M  R  I  T  Q  E  *  L  G  L  Q  I  F  K  :  G  D  *  G  L  V  L  E  E  K  *  M  E  G  W  G  K  I  G  G  H  *  A  Q  S  I  R  M  *  W  E  L  P  H  Y  T  V  L  L  S  T  R  E  M  T  L  L  S  K  N  F  L  N  Q  S  T  R  F  H  F  *  F  *  S  *  F  L  Y  L  F  F  N  F  L  F  *  F  L  S  R  N  K  A  S  A </first_frame>
            <second_frame>  N  P  L  F  L  M  N  P  N  K  I  N  Q  *  R  N  I  F  I  F  E  N  L  *  L  V  S  W  G  S  S  I  T  S  L  *  S  I  S  G  I  F  L  G  C  F  T  S  K  I  G  S  F  S  S  S  V  D  Q  V  L  S :   E  D  G  W  I  R  *  E  L  P  R  S  D  *  A  F  K  S  S  R :   G  I  E  A  W  C  W  R  K  S  E  W  R  V  G  A  K  *  E  G  T  K  H  N  Q  *  E  C  D  G  S  S  P  I  T  L  C  C  C  P  Q  E  K  *  H  Y  *  V  K  T  S  *  T  R  V  L  D  S  I  S  S  F  N  L  D  F  S  T  C  F  S  T  F  C  F  N  F  F  L  E  T  K  P  V   </second_frame>
            <third_frame>   I  L  S  F  *  *  T  L  T  R  L  I  S  R  G  T  F  L  F  L  K  I  F  D  *  F  H  G  V  L  Q  L  L  V  F  N  R  F  L  G  F  F  W  V  V  S  P  Q  R  S  D  L  F  H  L  V  W  I  K  F  S   : V  K  M  A  G  S  D  E  N  Y  P  G  V  I  R  P  S  N  L  Q   : G  G  L  R  P  G  V  G  G  K  V  N  G  G  L  G  Q  N  R  R  A  L  S  T  I  N  K  N  V  M  G  A  P  P  L  H  C  A  V  V  H  K  R  N  D  I  T  E  *  K  L  L  K  P  E  Y  S  I  P  F  L  V  L  I  L  I  S  L  P  V  F  Q  L  F  V  L  I  S  F  *  K  Q  S  Q  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64190" stop="64082"/>
                    <exon start="63940" stop="63881"/>
                    <exon start="63781" stop="63636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHGVLQLLVFNRFLGFFWVVSPQRSDLFHLVWIKFSVKMAGSDENYPGVIRPSNLQGGLRPGVGGKVNGGLGQNRRALSTINKNVMGAPPLHCAVVHKRNDITE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="66216" PGL_stop="67212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66216" e_stop="66539"/>
            <exon e_start="66766" e_stop="66882"/>
            <exon e_start="66954" e_stop="67212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.839" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66216" e_stop="66539" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.839" acc_prob="0.992">
            <gDNA_intron_boundary i_start="66540" i_stop="66765" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66766" e_stop="66882" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="66883" i_stop="66953" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="66954" e_stop="67212" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66216" stop="66539"/>
              <exon start="66766" stop="66882"/>
              <exon start="66954" stop="67066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66494" stop="66539"/>
              <exon start="66766" stop="66882"/>
              <exon start="66954" stop="67212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAACAAGGGTTTAAAATGGATGAAGAAAATGATCAATCAAATCGTATTACAACTCCTATTGATAATAAGGATTTGGTATACGAACTTATGGGTATAATTCATATTATAAGTTCTTACGCAGAATTTAGGAGGACTCAAAGAAAGGAAAGTCGTAATCTTGTACGTAGGATGAAACTTTTATTACCCCTTTTAGAAGAAATTCGAGATTTCCAAGGAAAAATACCTGAATCAGGTGTTCATTGTTTGGTGAAAATGAAGAAGGCATTTCATTCTGCTAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTG : GCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAG : GTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCTCGGAGAATGATCGAAATGCAGATAGTGCTAGTATAGAAAGGCTAGCGAAAAAACTGGAATTGCATACAGTTGAGGATTTAAAAGCTGAAATGATATCAGTTAATGAAGTTATAAAAGAAAGACGATCACATAATGCTGAGAACACACAACGAATCGTTGATCTTC</gDNA_template>
            <first_frame> F  E  Q  G  F  K  M  D  E  E  N  D  Q  S  N  R  I  T  T  P  I  D  N  K  D  L  V  Y  E  L  M  G  I  I  H  I  I  S  S  Y  A  E  F  R  R  T  Q  R  K  E  S  R  N  L  V  R  R  M  K  L  L  L  P  L  L  E  E  I  R  D  F  Q  G  K  I  P  E  S  G  V  H  C  L  V  K  M  K  K  A  F  H  S  A  K  K  L  L  K  T  C  H  C  G  S  K  L  Y  L  :  A  L  E  S  E  A  V  I  R  R  F  H  S  V  Y  E  K  L  S  Q  T  L  D  G  M  P  Y  E  E  L  G  I  S  D  E  E  K  E  Q  :  V  E  L  M  I  I  Q  F  K  R  S  K  K  R  I  D  T  Q  D  M  E  L  A  M  D  L  M  V  S  L  S  S  E  N  D  R  N  A  D  S  A  S  I  E  R  L  A  K  K  L  E  L  H  T  V  E  D  L  K  A  E  M  I  S  V  N  E  V  I  K  E  R  R  S  H  N  A  E  N  T  Q  R  I  V  D  L  </first_frame>
            <second_frame>  L  N  K  G  L  K  W  M  K  K  M  I  N  Q  I  V  L  Q  L  L  L  I  I  R  I  W  Y  T  N  L  W  V  *  F  I  L  *  V  L  T  Q  N  L  G  G  L  K  E  R  K  V  V  I  L  Y  V  G  *  N  F  Y  Y  P  F  *  K  K  F  E  I  S  K  E  K  Y  L  N  Q  V  F  I  V  W  *  K  *  R  R  H  F  I  L  L  K  S  C  *  K  L  V  I  V  V  A  N  F  I  W :   L  W  K  V  R  L  L  *  G  D  F  I  L  Y  M  K  N  *  A  K  L  W  M  E  C  L  M  K  N  L  V  F  Q  M  K  R  K  N  R :   W  S  *  *  S  F  N  L  K  G  L  R  N  E  L  I  L  K  I  W  N  S  R  W  I  *  W  F  H  C  P  R  R  M  I  E  M  Q  I  V  L  V  *  K  G  *  R  K  N  W  N  C  I  Q  L  R  I  *  K  L  K  *  Y  Q  L  M  K  L  *  K  K  D  D  H  I  M  L  R  T  H  N  E  S  L  I  F </second_frame>
            <third_frame>   *  T  R  V  *  N  G  *  R  K  *  S  I  K  S  Y  Y  N  S  Y  *  *  *  G  F  G  I  R  T  Y  G  Y  N  S  Y  Y  K  F  L  R  R  I  *  E  D  S  K  K  G  K  S  *  S  C  T  *  D  E  T  F  I  T  P  F  R  R  N  S  R  F  P  R  K  N  T  *  I  R  C  S  L  F  G  E  N  E  E  G  I  S  F  C  *  K  V  V  K  N  L  S  L  W  *  Q  T  L  S   : G  F  G  K  *  G  C  Y  K  E  I  S  F  C  I  *  K  I  K  P  N  F  G  W  N  A  L  *  R  T  W  Y  F  R  *  R  E  R  T   : G  G  V  D  D  H  S  I  *  K  V  *  E  T  N  *  Y  S  R  Y  G  T  R  D  G  F  D  G  F  I  V  L  G  E  *  S  K  C  R  *  C  *  Y  R  K  A  S  E  K  T  G  I  A  Y  S  *  G  F  K  S  *  N  D  I  S  *  *  S  Y  K  R  K  T  I  T  *  C  *  E  H  T  T  N  R  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66216" stop="66539"/>
                    <exon start="66766" stop="66882"/>
                    <exon start="66954" stop="67211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEQGFKMDEENDQSNRITTPIDNKDLVYELMGIIHIISSYAEFRRTQRKESRNLVRRMKLLLPLLEEIRDFQGKIPESGVHCLVKMKKAFHSAKKLLKTCHCGSKLYLALESEAVIRRFHSVYEKLSQTLDGMPYEELGISDEEKEQVELMIIQFKRSKKRIDTQDMELAMDLMVSLSSENDRNADSASIERLAKKLELHTVEDLKAEMISVNEVIKERRSHNAENTQRIVDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="67748" PGL_stop="69029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67748" e_stop="69029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="67748" e_stop="69029" e_length="1282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67748" stop="68544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67749" stop="68412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67749" stop="68239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67761" stop="67975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67902" stop="68064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68297" stop="69025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68490" stop="69029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACAATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTACAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGATAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGGTTGTGTCTCTTCAGAAAAGGTAAAAGAAGTCCTAACGGAAACTGTATGAAGAACTTTCTCCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCAGACTTTTCAAAATTGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACATAAATGCAACAATAAATTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATTAATGGAGAAGAATCATGGGAAAATGT</gDNA_template>
            <first_frame> E  N  P  E  K  R  T  L  I  A  N  Y  G  G  I  P  P  L  V  L  L  L  S  Y  P  D  S  K  I  Q  E  H  A  V  T  A  L  L  N  L  S  I  D  E  S  N  K  K  L  I  S  R  E  N  A  I  P  E  I  I  E  I  L  Q  N  G  S  V  G  A  K  E  N  S  A  A  A  L  F  S  L  S  M  L  D  E  N  K  V  A  I  G  S  L  N  G  I  P  P  L  I  D  L  L  K  N  G  T  I  R  G  R  K  D  A  I  T  A  L  F  N  L  C  F  N  H  A  N  K  S  I  A  I  Q  A  G  I  V  A  P  L  L  Q  L  L  E  E  K  H  L  D  M  V  D  E  T  L  S  I  L  L  I  L  A  T  H  P  E  G  R  Q  V  I  G  K  L  S  F  I  E  T  L  V  N  L  M  K  D  G  T  P  K  N  K  E  C  S  V  A  V  L  F  E  L  S  T  Y  N  S  N  L  M  L  A  A  L  Q  Y  G  V  Y  E  Y  L  V  E  I  S  K  E  G  T  D  R  G  Q  R  K  A  K  S  I  L  Q  L  M  T  K  T  E  Q  I  P  Y  *  *  C  K  V  Q  M  Y  I  C  L  A  F  G  S  S  C  R  P  C  R  S  T  W  I  Y  V  Q  I  N  E  Y  I  F  V  T  C  Y  I  M  *  E  K  E  T  K  H  E  C  *  I  E  L  V  E  G  L  C  L  F  R  K  G  K  R  S  P  N  G  N  C  M  K  N  F  L  Q  *  F  K  A  K  L  E  E  F  L  Q  E  Y  F  S  L  *  S  R  Y  D  H  R  L  C  Y  S  D  F  S  K  L  L  T  S  A  C  Q  I  L  Q  K  N  S  A  F  W  R  I  *  H  K  C  N  N  K  F  E  E  S  N  H  R  L  *  T  C  I  T  I  *  C  *  L  D  G  C  D  C  F  Y  V  T  N  E  N  K  L  M  E  K  N  H  G  K  M  </first_frame>
            <second_frame>  K  I  Q  R  N  E  H  *  *  L  I  M  E  E  F  H  H  W  C  C  Y  F  P  I  R  I  Q  K  S  R  N  M  L  *  Q  L  F  *  T  C  Q  S  M  N  Q  T  R  N  L  Y  P  E  K  T  R  F  L  K  *  *  R  F  C  K  M  E  V  L  E  L  K  R  T  L  Q  Q  H  Y  L  A  Y  Q  C  L  M  K  T  K  *  L  *  V  R  *  M  A  S  L  R  *  L  I  C  *  K  T  E  Q  S  E  G  G  R  M  P  L  L  H  F  S  I  Y  V  S  T  M  L  T  K  V  S  R  S  K  L  G  L  *  H  H  Y  F  N  Y  *  R  K  N  T  *  T  W  L  M  R  H  C  Q  Y  C  *  F  S  R  L  I  Q  K  A  D  R  *  L  E  S  F  P  S  S  K  H  L  *  I  *  *  R  M  A  L  P  R  T  R  N  V  L  L  L  C  F  S  S  *  V  P  T  I  Q  I  L  C  L  L  L  F  N  T  A  C  M  N  I  *  *  R  *  V  R  R  E  L  I  A  A  K  G  K  Q  N  Q  Y  Y  N  L  *  P  K  L  S  R  S  H  I  D  N  A  K  S  K  C  T  S  A  *  H  L  A  R  P  V  V  H  V  G  Q  L  G  S  M  S  K  L  T  N  I  Y  L  L  H  V  I  *  C  K  K  K  K  Q  N  T  S  A  K  *  N  S  L  K  G  C  V  S  S  E  K  V  K  E  V  L  T  E  T  V  *  R  T  F  S  N  D  S  R  Q  S  *  K  N  F  Y  R  N  I  S  P  C  N  P  G  M  I  I  D  Y  V  T  Q  T  F  Q  N  C  *  Q  V  H  V  R  Y  S  K  K  I  V  H  F  G  E  S  N  I  N  A  T  I  N  L  K  S  Q  I  I  D  C  E  L  A  L  Q  S  S  V  D  *  M  D  V  I  V  F  M  *  L  M  K  T  N  *  W  R  R  I  M  G  K  C </second_frame>
            <third_frame>   K  S  R  E  T  N  I  D  S  *  L  W  R  N  S  T  T  G  V  A  T  F  L  S  G  F  K  N  P  G  T  C  C  D  S  S  F  K  L  V  N  R  *  I  K  Q  E  T  Y  I  Q  R  K  R  D  S  *  N  N  R  D  F  A  K  W  K  C  W  S  *  R  E  L  C  S  S  I  I  *  L  I  N  A  *  *  K  Q  S  S  Y  R  F  V  K  W  H  P  S  V  D  *  S  V  K  K  R  N  N  Q  R  E  E  G  C  H  Y  C  T  F  Q  S  M  F  Q  P  C  *  Q  K  Y  R  D  P  S  W  D  C  S  T  I  T  S  T  T  R  G  K  T  L  R  H  G  *  *  D  I  V  N  I  V  D  S  R  D  S  S  R  R  Q  T  G  N  W  K  A  F  L  H  R  N  T  C  K  F  D  E  G  W  H  S  Q  E  Q  G  M  F  C  C  C  A  F  R  V  E  Y  L  Q  F  K  S  Y  A  C  C  S  S  I  R  R  V  *  I  S  S  R  D  K  *  G  G  N  *  S  R  P  K  E  S  K  I  N  T  T  T  Y  D  Q  N  *  A  D  P  I  L  I  M  Q  S  P  N  V  H  L  L  S  I  W  L  V  L  S  S  M  *  V  N  L  D  L  C  P  N  *  R  I  Y  I  C  Y  M  L  Y  N  V  R  K  R  N  K  T  R  V  L  N  R  T  R  *  R  V  V  S  L  Q  K  R  *  K  K  S  *  R  K  L  Y  E  E  L  S  P  M  I  Q  G  K  V  R  R  I  F  T  G  I  F  L  L  V  I  Q  V  *  S  *  T  M  L  L  R  L  F  K  I  V  D  K  C  M  S  D  T  P  K  K  *  C  I  L  E  N  L  T  *  M  Q  Q  *  I  *  R  V  K  S  *  I  V  N  L  H  Y  N  L  V  L  I  R  W  M  *  L  F  L  C  D  *  *  K  Q  I  N  G  E  E  S  W  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67748" stop="68512"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENPEKRTLIANYGGIPPLVLLLSYPDSKIQEHAVTALLNLSIDESNKKLISRENAIPEIIEILQNGSVGAKENSAAALFSLSMLDENKVAIGSLNGIPPLIDLLKNGTIRGRKDAITALFNLCFNHANKSIAIQAGIVAPLLQLLEEKHLDMVDETLSILLILATHPEGRQVIGKLSFIETLVNLMKDGTPKNKECSVAVLFELSTYNSNLMLAALQYGVYEYLVEISKEGTDRGQRKAKSILQLMTKTEQIPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="72630" PGL_stop="77011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72630" e_stop="72702"/>
            <exon e_start="74439" e_stop="75190"/>
            <exon e_start="75387" e_stop="75470"/>
            <exon e_start="76675" e_stop="77011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.878" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="72630" e_stop="72702" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.997">
            <gDNA_intron_boundary i_start="72703" i_stop="74438" i_length="1736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74439" e_stop="75190" e_length="752"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75387" e_stop="75470" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.878">
            <gDNA_intron_boundary i_start="75471" i_stop="76674" i_length="1204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76675" e_stop="77011" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72630" stop="72702"/>
              <exon start="74439" stop="74784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72658" stop="72702"/>
              <exon start="74439" stop="74911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="75190"/>
              <exon start="75387" stop="75427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74855" stop="75190"/>
              <exon start="75387" stop="75470"/>
              <exon start="76675" stop="76812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75091" stop="75190"/>
              <exon start="75387" stop="75470"/>
              <exon start="76675" stop="77011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTGAAACCCCTCTCACTGGCGCCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACA : GCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC : TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAG : GAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</gDNA_template>
            <first_frame> S  F  E  T  P  L  T  G  A  V  S  S  I  F  A  H  S  F  *  F  T  P  F  Y   : S  F  I  L  I  V  F  C  L  R  R  V  L  R  I  I  S  K  W  S  T  L  N  P  F  I  M  V  *  P  L  V  E  L  V  C  Q  R  L  I  S  N  F  L  V  Y  Q  E  R  Q  L  *  E  M  C  R  I  K  K  P  A  *  *  V  A  I  K  K  I  H  I  F  *  A  *  D  L  L  Q  I  Q  L  G  Y  V  E  L  R  G  L  H  L  S  V  L  Q  I  P  I  L  A  N  L  *  A  A  M  I  Q  M  T  I  Y  L  M  L  D  E  D  L  I  *  N  W  V  K  E  D  F  R  A  M  W  T  N  L  W  R  L  L  T  Q  R  T  *  V  S  C  R  G  Q  F  L  K  S  K  I  Y  R  G  K  V  V  M  V  I  L  L  *  H  H  Q  S  I  W  H  L  *  *  H  F  L  M  V  D  H  Q  F  L  I  L  L  A  R  L  L  T  T  L  V  L  F  Q  L  I  L  L  S  F  L  P  S  Q  C  V  L  W  M  S  R  R  K  K  I  R  N  *  Q  N  I  S  F  V  C  R  S  S  *  N  S  V  M  K  Q  T  K  Q  N  T  F  S  :  C  F  Y  V  C  H  H  L  S  L  A  D  M  P  L  T  W  R  K  G  L  S  S  *  Q  *  K  K  :  E  R  R  C  N  E  *  R  T  S  M  F  W  E  N  P  P  C  F  P  A  *  L  R  Q  F  H  *  S  Q  S  R  N  D  E  A  N  G  N  N  S  C  C  T  D  A  M  P  V  L  K  L  V  L  H  W  V  Q  D  L  E  R  R  L  L  G  V  G  F  F  R  H  L  *  S  F  F  S  L  Y  S  K  F  F  P  F  D  *  L  A  L  *  R  *  R  S  Y  Q  T  L  Y  F  G  I  L  L  G  I  S  S  S  Y  </first_frame>
            <second_frame>  L  L  K  P  L  S  L  A  P  S  L  P  S  L  L  T  V  F  D  L  H  L  F  T  :  A  S  F  *  *  F  S  A  S  E  G  C  *  E  *  S  Q  N  G  Q  L  *  T  P  S  *  W  C  D  H  W  W  N  W  Y  A  S  V  *  *  A  T  S  W  C  I  K  K  D  S  F  E  R  C  A  E  S  K  N  Q  L  D  E  *  P  S  R  K  F  T  F  F  R  R  K  T  Y  C  R  S  N  *  G  M  W  N  *  E  A  Y  T  *  A  S  F  K  Y  Q  F  *  Q  I  F  E  Q  Q  *  Y  K  *  Q  Y  T  *  C  S  T  K  I  *  S  R  T  G  *  R  K  T  S  E  Q  C  G  Q  I  C  G  G  Y  S  L  K  E  P  E  S  V  A  E  D  N  S  S  K  A  K  S  T  E  G  R  *  *  W  S  S  S  C  S  I  T  K  A  F  G  T  Y  D  D  I  F  S  W  W  T  I  N  S  *  F  Y  W  Q  G  C  *  Q  L  S  C  S  S  N  *  F  F  *  A  F  S  P  A  N  A  Y  F  G  C  Q  G  G  R  R  S  E  I  D  R  T  F  H  S  S  A  E  V  P  E  T  V  *  *  S  K  P  N  R  I  P  S  A :   A  S  T  F  V  T  T  *  A  *  Q  T  C  R  *  L  G  E  K  G  Y  P  V  D  N  R  R  R :   K  G  D  A  T  S  E  E  P  Q  C  F  G  K  I  H  P  V  F  Q  L  N  S  D  S  S  I  S  P  N  Q  E  M  M  K  L  M  A  I  I  H  V  A  L  M  Q  C  L  F  *  N  L  Y  S  T  G  Y  K  I  L  R  G  G  Y  *  A  L  A  S  L  D  I  Y  S  L  F  F  L  F  I  V  S  F  F  L  L  I  S  *  P  S  R  D  E  E  V  I  K  H  C  T  L  V  F  F  W  V  *  A  V  H  T </second_frame>
            <third_frame>   F  *  N  P  S  H  W  R  R  L  F  H  L  C  S  Q  F  L  I  Y  T  F  L  Q :   L  H  F  D  S  F  L  P  P  K  G  V  E  N  N  L  K  M  V  N  S  E  P  L  H  N  G  V  T  T  G  G  T  G  M  P  A  F  D  K  Q  L  P  G  V  S  R  K  T  A  L  R  D  V  Q  N  Q  K  T  S  L  M  S  S  H  Q  E  N  S  H  F  L  G  V  R  P  I  A  D  P  T  R  V  C  G  T  K  R  L  T  P  E  R  P  S  N  T  N  S  S  K  S  L  S  S  N  D  T  N  D  N  I  L  N  A  R  R  R  F  D  L  E  L  G  K  G  R  L  Q  S  N  V  D  K  F  V  E  A  T  H  S  K  N  L  S  Q  L  Q  R  T  I  P  Q  K  Q  N  L  Q  R  E  G  S  N  G  H  P  P  V  A  S  P  K  H  L  A  P  M  M  T  F  S  H  G  G  P  S  I  P  N  S  I  G  K  A  A  N  N  S  R  A  L  P  I  D  S  S  K  L  S  P  Q  P  M  R  T  L  D  V  K  A  E  E  D  Q  K  L  T  E  H  F  I  R  L  Q  K  F  L  K  Q  C  D  E  A  N  Q  T  E  Y  L  Q   : L  L  L  R  L  S  P  P  E  L  S  R  H  A  V  D  L  E  K  R  A  I  Q  L  T  I  E  E   : G  K  E  M  Q  R  V  K  N  L  N  V  L  G  K  S  T  L  F  S  S  L  T  Q  T  V  P  L  V  P  I  K  K  *  *  S  *  W  Q  *  F  M  L  H  *  C  N  A  C  F  K  T  C  T  P  L  G  T  R  S  *  E  E  A  I  R  R  W  L  L  *  T  S  I  V  F  F  F  S  L  *  *  V  F  S  F  *  L  A  S  P  L  E  M  K  K  L  S  N  T  V  L  W  Y  S  F  G  Y  K  Q  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72638" stop="72702"/>
                    <exon start="74439" stop="75190"/>
                    <exon start="75387" stop="75470"/>
                    <exon start="76675" stop="76775"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSHWRRLFHLCSQFLIYTFLQLHFDSFLPPKGVENNLKMVNSEPLHNGVTTGGTGMPAFDKQLPGVSRKTALRDVQNQKTSLMSSHQENSHFLGVRPIADPTRVCGTKRLTPERPSNTNSSKSLSSNDTNDNILNARRRFDLELGKGRLQSNVDKFVEATHSKNLSQLQRTIPQKQNLQREGSNGHPPVASPKHLAPMMTFSHGGPSIPNSIGKAANNSRALPIDSSKLSPQPMRTLDVKAEEDQKLTEHFIRLQKFLKQCDEANQTEYLQLLLRLSPPELSRHAVDLEKRAIQLTIEEGKEMQRVKNLNVLGKSTLFSSLTQTVPLVPIKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72655" e_stop="72702"/>
            <exon e_start="74454" e_stop="75190"/>
            <exon e_start="75387" e_stop="75470"/>
            <exon e_start="76675" e_stop="77011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.962" e_score="0.979"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="0.999"/>
          <exon-intron don_prob="0.962" acc_prob="0.878" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="72655" e_stop="72702" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.962">
            <gDNA_intron_boundary i_start="72703" i_stop="74453" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="74454" e_stop="75190" e_length="737"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75387" e_stop="75470" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.878">
            <gDNA_intron_boundary i_start="75471" i_stop="76674" i_length="1204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76675" e_stop="77011" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72655" stop="72702"/>
              <exon start="74454" stop="75190"/>
              <exon start="75387" stop="75415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="75190"/>
              <exon start="75387" stop="75427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74855" stop="75190"/>
              <exon start="75387" stop="75470"/>
              <exon start="76675" stop="76812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75091" stop="75190"/>
              <exon start="75387" stop="75470"/>
              <exon start="76675" stop="77011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACA : TTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC : TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAG : GAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</gDNA_template>
            <first_frame> P  S  L  P  S  L  L  T  V  F  D  L  H  L  F  T  :  F  S  A  S  E  G  C  *  E  *  S  Q  N  G  Q  L  *  T  P  S  *  W  C  D  H  W  W  N  W  Y  A  S  V  *  *  A  T  S  W  C  I  K  K  D  S  F  E  R  C  A  E  S  K  N  Q  L  D  E  *  P  S  R  K  F  T  F  F  R  R  K  T  Y  C  R  S  N  *  G  M  W  N  *  E  A  Y  T  *  A  S  F  K  Y  Q  F  *  Q  I  F  E  Q  Q  *  Y  K  *  Q  Y  T  *  C  S  T  K  I  *  S  R  T  G  *  R  K  T  S  E  Q  C  G  Q  I  C  G  G  Y  S  L  K  E  P  E  S  V  A  E  D  N  S  S  K  A  K  S  T  E  G  R  *  *  W  S  S  S  C  S  I  T  K  A  F  G  T  Y  D  D  I  F  S  W  W  T  I  N  S  *  F  Y  W  Q  G  C  *  Q  L  S  C  S  S  N  *  F  F  *  A  F  S  P  A  N  A  Y  F  G  C  Q  G  G  R  R  S  E  I  D  R  T  F  H  S  S  A  E  V  P  E  T  V  *  *  S  K  P  N  R  I  P  S  A :   A  S  T  F  V  T  T  *  A  *  Q  T  C  R  *  L  G  E  K  G  Y  P  V  D  N  R  R  R :   K  G  D  A  T  S  E  E  P  Q  C  F  G  K  I  H  P  V  F  Q  L  N  S  D  S  S  I  S  P  N  Q  E  M  M  K  L  M  A  I  I  H  V  A  L  M  Q  C  L  F  *  N  L  Y  S  T  G  Y  K  I  L  R  G  G  Y  *  A  L  A  S  L  D  I  Y  S  L  F  F  L  F  I  V  S  F  F  L  L  I  S  *  P  S  R  D  E  E  V  I  K  H  C  T  L  V  F  F  W  V  *  A  V  H  T </first_frame>
            <second_frame>  R  L  F  H  L  C  S  Q  F  L  I  Y  T  F  L  H :   F  L  P  P  K  G  V  E  N  N  L  K  M  V  N  S  E  P  L  H  N  G  V  T  T  G  G  T  G  M  P  A  F  D  K  Q  L  P  G  V  S  R  K  T  A  L  R  D  V  Q  N  Q  K  T  S  L  M  S  S  H  Q  E  N  S  H  F  L  G  V  R  P  I  A  D  P  T  R  V  C  G  T  K  R  L  T  P  E  R  P  S  N  T  N  S  S  K  S  L  S  S  N  D  T  N  D  N  I  L  N  A  R  R  R  F  D  L  E  L  G  K  G  R  L  Q  S  N  V  D  K  F  V  E  A  T  H  S  K  N  L  S  Q  L  Q  R  T  I  P  Q  K  Q  N  L  Q  R  E  G  S  N  G  H  P  P  V  A  S  P  K  H  L  A  P  M  M  T  F  S  H  G  G  P  S  I  P  N  S  I  G  K  A  A  N  N  S  R  A  L  P  I  D  S  S  K  L  S  P  Q  P  M  R  T  L  D  V  K  A  E  E  D  Q  K  L  T  E  H  F  I  R  L  Q  K  F  L  K  Q  C  D  E  A  N  Q  T  E  Y  L  Q   : L  L  L  R  L  S  P  P  E  L  S  R  H  A  V  D  L  E  K  R  A  I  Q  L  T  I  E  E   : G  K  E  M  Q  R  V  K  N  L  N  V  L  G  K  S  T  L  F  S  S  L  T  Q  T  V  P  L  V  P  I  K  K  *  *  S  *  W  Q  *  F  M  L  H  *  C  N  A  C  F  K  T  C  T  P  L  G  T  R  S  *  E  E  A  I  R  R  W  L  L  *  T  S  I  V  F  F  F  S  L  *  *  V  F  S  F  *  L  A  S  P  L  E  M  K  K  L  S  N  T  V  L  W  Y  S  F  G  Y  K  Q  F  I   </second_frame>
            <third_frame>   V  S  S  I  F  A  H  S  F  *  F  T  P  F  Y   : I  F  C  L  R  R  V  L  R  I  I  S  K  W  S  T  L  N  P  F  I  M  V  *  P  L  V  E  L  V  C  Q  R  L  I  S  N  F  L  V  Y  Q  E  R  Q  L  *  E  M  C  R  I  K  K  P  A  *  *  V  A  I  K  K  I  H  I  F  *  A  *  D  L  L  Q  I  Q  L  G  Y  V  E  L  R  G  L  H  L  S  V  L  Q  I  P  I  L  A  N  L  *  A  A  M  I  Q  M  T  I  Y  L  M  L  D  E  D  L  I  *  N  W  V  K  E  D  F  R  A  M  W  T  N  L  W  R  L  L  T  Q  R  T  *  V  S  C  R  G  Q  F  L  K  S  K  I  Y  R  G  K  V  V  M  V  I  L  L  *  H  H  Q  S  I  W  H  L  *  *  H  F  L  M  V  D  H  Q  F  L  I  L  L  A  R  L  L  T  T  L  V  L  F  Q  L  I  L  L  S  F  L  P  S  Q  C  V  L  W  M  S  R  R  K  K  I  R  N  *  Q  N  I  S  F  V  C  R  S  S  *  N  S  V  M  K  Q  T  K  Q  N  T  F  S  :  C  F  Y  V  C  H  H  L  S  L  A  D  M  P  L  T  W  R  K  G  L  S  S  *  Q  *  K  K  :  E  R  R  C  N  E  *  R  T  S  M  F  W  E  N  P  P  C  F  P  A  *  L  R  Q  F  H  *  S  Q  S  R  N  D  E  A  N  G  N  N  S  C  C  T  D  A  M  P  V  L  K  L  V  L  H  W  V  Q  D  L  E  R  R  L  L  G  V  G  F  F  R  H  L  *  S  F  F  S  L  Y  S  K  F  F  P  F  D  *  L  A  L  *  R  *  R  S  Y  Q  T  L  Y  F  G  I  L  L  G  I  S  S  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72656" stop="72702"/>
                    <exon start="74454" stop="75190"/>
                    <exon start="75387" stop="75470"/>
                    <exon start="76675" stop="76775"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLFHLCSQFLIYTFLHFLPPKGVENNLKMVNSEPLHNGVTTGGTGMPAFDKQLPGVSRKTALRDVQNQKTSLMSSHQENSHFLGVRPIADPTRVCGTKRLTPERPSNTNSSKSLSSNDTNDNILNARRRFDLELGKGRLQSNVDKFVEATHSKNLSQLQRTIPQKQNLQREGSNGHPPVASPKHLAPMMTFSHGGPSIPNSIGKAANNSRALPIDSSKLSPQPMRTLDVKAEEDQKLTEHFIRLQKFLKQCDEANQTEYLQLLLRLSPPELSRHAVDLEKRAIQLTIEEGKEMQRVKNLNVLGKSTLFSSLTQTVPLVPIKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="78848" PGL_stop="81999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78848" e_stop="78917"/>
            <exon e_start="79589" e_stop="79685"/>
            <exon e_start="80630" e_stop="80907"/>
            <exon e_start="81532" e_stop="81999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.738" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78848" e_stop="78917" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.925">
            <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79589" e_stop="79685" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80630" e_stop="80907" e_length="278"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.738">
            <gDNA_intron_boundary i_start="80908" i_stop="81531" i_length="624"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="81532" e_stop="81999" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78848" stop="78917"/>
              <exon start="79589" stop="79685"/>
              <exon start="80630" stop="80907"/>
              <exon start="81532" stop="81723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78849" stop="78917"/>
              <exon start="79589" stop="79685"/>
              <exon start="80630" stop="80907"/>
              <exon start="81532" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78852" stop="78917"/>
              <exon start="79589" stop="79685"/>
              <exon start="80630" stop="80863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78876" stop="78917"/>
              <exon start="79589" stop="79685"/>
              <exon start="80630" stop="80810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80783" stop="80907"/>
              <exon start="81532" stop="81999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374961" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAG : TATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAG : GGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAG : GGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTATCCAGAGTGGAAACTGTTCATCCAAACTATTGATCCTGATCATGAAGACAGATTTGACTTTGACCCC</gDNA_template>
            <first_frame> I  S  S  S  V  F  S  L  S  V  *  I  F  F  S  F  F  C  H  G  S  L  Q   : V  S  S  F  K  C  C  Q  F  P  L  H  D  N  *  L  W  C  S  C  V  *  Q  Q  F  F  L  D  C  W  N  *  R :   A  N  S  S  R  G  L  S  S  A  G  E  D  C  Q  F  *  S  *  E  N  P  R  A  C  C  S  C  Q  R  C  Q  C  Q  G  F  L  *  G  H  T  *  Y  I  P  S  Y  M  C  *  F  S  S  S  S  W  C  P  D  T  C  Y  C  E  V  L  Y  C  Y  P  R  A  W  K  P  *  N  P  Q  G  P  Q  R  I  C  C  K  I  L  H  Q  R   : G  *  L  *  F  S  W  K  Q  L  P  C  L  L  R  P  *  W  N  E  V  P  *  H  G  S  C  P  E  T  K  S  K  V  P  H  S  G  E  L  E  D  P  *  F  L  L  S  P  S  R  K  S  S  Y  V  Q  F  P  V  *  *  S  G  N  S  T  R  L  Q  A  H  G  W  F  R  C  *  Y  L  H  A  D  Q  Q  S  W  E  S  T  V  C  E  I  P  L  E  A  N  L  W  S  Q  M  L  V  G  *  R  S  Y  *  G  R  W  I  K  S  *  S  C  H  Q  G  S  L  *  F  N  C  C  W  E  L  S  R  V  E  T  V  H  P  N  Y  *  S  *  S  *  R  Q  I  *  L  *  P  </first_frame>
            <second_frame>  F  L  L  P  F  S  L  F  Q  S  K  Y  F  S  L  S  F  A  M  D  P  Y  K  :  Y  R  P  S  S  A  A  N  S  P  F  M  T  T  N  S  G  A  P  V  Y  N  N  N  S  S  L  T  V  G  T  R   : G  P  I  L  L  E  D  Y  H  L  L  E  K  I  A  N  F  D  R  E  R  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  V  Q  T  P  V  I  V  R  F  S  T  V  I  H  E  R  G  S  P  E  T  L  R  D  P  R  G  F  A  V  K  F  Y  T  R  E  :  G  N  F  D  L  V  G  N  N  F  P  V  F  F  V  R  D  G  M  K  F  P  D  M  V  H  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  H  H  P  E  S  L  H  M  F  S  F  L  F  D  D  L  G  I  P  Q  D  Y  R  H  M  D  G  F  G  V  N  T  Y  M  L  I  N  K  A  G  K  A  Q  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  L  L  D  E  E  A  I  K  V  G  G  S  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  I  D  P  D  H  E  D  R  F  D  F  D  P </second_frame>
            <third_frame>   F  F  F  R  F  L  S  F  S  L  N  I  F  L  F  L  L  P  W  I  L  T  S :   I  V  L  Q  V  L  P  I  P  P  S  *  Q  L  T  L  V  L  L  C  I  T  T  I  L  P  *  L  L  E  L  E  :  G  Q  F  F  S  R  I  I  I  C  W  R  R  L  P  I  L  I  V  R  E  S  Q  S  V  L  F  M  P  E  V  P  V  P  R  V  S  L  R  S  H  M  I  Y  P  I  L  H  V  L  I  F  F  E  L  L  V  S  R  H  L  L  L  *  G  S  L  L  L  S  T  S  V  E  A  L  K  P  S  G  T  P  E  D  L  L  *  N  F  T  P  E  R :   V  T  L  I  *  L  E  T  T  S  L  S  S  S  S  V  M  E  *  S  S  L  T  W  F  M  P  *  N  Q  I  Q  S  P  T  F  R  R  T  G  G  S  L  I  S  S  L  T  I  Q  K  V  F  I  C  S  V  S  C  L  M  I  W  E  F  H  K  I  T  G  T  W  M  V  S  V  L  I  P  T  C  *  S  T  K  L  G  K  H  S  M  *  N  S  I  G  S  Q  L  V  E  S  N  A  C  W  M  K  K  L  L  R  S  V  D  Q  I  I  V  M  P  P  R  I  S  M  I  Q  L  L  L  G  T  I  Q  S  G  N  C  S  S  K  L  L  I  L  I  M  K  T  D  L  T  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78849" stop="78917"/>
                    <exon start="79589" stop="79685"/>
                    <exon start="80630" stop="80907"/>
                    <exon start="81532" stop="81999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLPFSLFQSKYFSLSFAMDPYKYRPSSAANSPFMTTNSGAPVYNNNSSLTVGTRGPILLEDYHLLEKIANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGIPQDYRHMDGFGVNTYMLINKAGKAQYVKFHWKPTCGVKCLLDEEAIKVGGSNHSHATKDLYDSIAAGNYPEWKLFIQTIDPDHEDRFDFDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="82094" PGL_stop="83380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82094" e_stop="82308"/>
            <exon e_start="82572" e_stop="82661"/>
            <exon e_start="82775" e_stop="82842"/>
            <exon e_start="82927" e_stop="83020"/>
            <exon e_start="83119" e_stop="83380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="82094" e_stop="82308" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82309" i_stop="82571" i_length="263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82572" e_stop="82661" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82842" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.766" acc_prob="0.930">
            <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82927" e_stop="83020" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="83119" e_stop="83380" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82094" stop="82308"/>
              <exon start="82572" stop="82661"/>
              <exon start="82775" stop="82842"/>
              <exon start="82927" stop="83020"/>
              <exon start="83119" stop="83319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82266" stop="82308"/>
              <exon start="82572" stop="82661"/>
              <exon start="82775" stop="82842"/>
              <exon start="82927" stop="83020"/>
              <exon start="83119" stop="83380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374962" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82646" stop="82661"/>
              <exon start="82775" stop="82842"/>
              <exon start="82927" stop="83020"/>
              <exon start="83119" stop="83380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82937" stop="83020"/>
              <exon start="83119" stop="83380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204646" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGAGCAGCTTGCTTTTTGCCCTGCCATTATTGTCCCTGGTGTTTACTATTCGGATGATAAGCTTCTCCAAACTAGGGTATTCTCATATGCTGATACCCAGAGACACCGCCTTGGTCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAATAATCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAG : GTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAG : GTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAG : GCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAG : GCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</gDNA_template>
            <first_frame> R  M  S  S  L  L  F  A  L  P  L  L  S  L  V  F  T  I  R  M  I  S  F  S  K  L  G  Y  S  H  M  L  I  P  R  D  T  A  L  V  Q  T  I  C  S  S  Q  L  M  L  P  S  V  L  I  T  I  I  T  M  K  V  S  *  I  S  C  T  V  M  K  R :   S  T  I  C  P  Q  G  L  I  L  V  V  M  R  S  S  T  L  F  L  L  V  S  *  Q  E  N  A  K  R :   S  S  L  R  K  R  T  T  L  S  S  Q  E  N  I  T  D  L  G  H  R  T   : G  K  K  D  F  C  A  D  G  L  M  L  Y  L  I  L  E  P  L  M  K  F  A  V  S  G  S  H  T  G  H  R :   L  T  S  L  L  V  R  S  S  R  L  V  S  I  *  G  L  Q  C  E  D  E  N  V  L  V  *  *  R  S  N  P  R  K  K  C  L  F  W  V  V  V  W  L  C  T  N  K  L  S  C  V  S  S  D  H  F  L  N  K  L  N  V  L  V  S  *  S  G  C  F  Y  E  V  I  S  Y  I  I  T  N  I  Q  L  D  P  K </first_frame>
            <second_frame>  E  *  A  A  C  F  L  P  C  H  Y  C  P  W  C  L  L  F  G  *  *  A  S  P  N  *  G  I  L  I  C  *  Y  P  E  T  P  P  W  S  K  L  S  A  A  P  S  *  C  S  Q  V  C  S  S  Q  *  S  P  *  R  S  H  E  F  H  A  P  *  *  R   : G  Q  L  F  A  L  K  A  *  S  L  S  S  C  G  A  V  P  Y  S  S  S  C  L  D  R  K  T  R  K   : G  H  H  *  E  R  E  Q  L  *  A  A  R  R  T  L  Q  I  L  G  T  G  Q  :  A  R  K  I  F  V  Q  M  G  *  C  S  I  *  S  S  S  H  S  *  N  S  Q  Y  L  D  L  I  L  V  T   : G  *  Q  V  S  W  S  E  A  R  V  S  S  Q  Y  K  A  Y  N  V  K  M  K  M  C  W  C  S  E  E  V  I  Q  E  K  N  V  C  F  G  W  *  C  G  C  V  P  T  N  F  L  V  L  V  L  I  T  F  *  I  N  *  T  F  *  S  H  K  V  G  V  S  M  R  L  Y  H  T  *  *  R  I  Y  S  W  I  L   </second_frame>
            <third_frame>   N  E  Q  L  A  F  C  P  A  I  I  V  P  G  V  Y  Y  S  D  D  K  L  L  Q  T  R  V  F  S  Y  A  D  T  Q  R  H  R  L  G  P  N  Y  L  Q  L  P  V  N  A  P  K  C  A  H  H  N  N  H  H  E  G  L  M  N  F  M  H  R  D  E  E  :  V  N  Y  L  P  S  R  L  D  P  C  R  H  A  E  Q  Y  P  I  P  P  R  V  L  T  G  K  R  E  K  :  V  I  I  E  K  E  N  N  F  K  Q  P  G  E  H  Y  R  S  W  A  P  D  R :   Q  E  R  F  L  C  R  W  V  D  A  L  S  D  P  R  A  T  H  E  I  R  S  I  W  I  S  Y  W  S  Q  :  A  D  K  S  L  G  Q  K  L  A  S  R  L  N  I  R  P  T  M  *  R  *  K  C  V  G  V  V  K  K  *  S  K  K  K  M  F  V  L  G  G  S  V  V  V  Y  Q  Q  T  F  L  C  *  F  *  S  L  S  E  *  I  E  R  F  S  L  I  K  W  V  F  L  *  G  Y  I  I  H  N  N  E  Y  T  V  G  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82096" stop="82308"/>
                    <exon start="82572" stop="82661"/>
                    <exon start="82775" stop="82842"/>
                    <exon start="82927" stop="83020"/>
                    <exon start="83119" stop="83178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEQLAFCPAIIVPGVYYSDDKLLQTRVFSYADTQRHRLGPNYLQLPVNAPKCAHHNNHHEGLMNFMHRDEEVNYLPSRLDPCRHAEQYPIPPRVLTGKREKVIIEKENNFKQPGEHYRSWAPDRQERFLCRWVDALSDPRATHEIRSIWISYWSQADKSLGQKLASRLNIRPTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="84639" PGL_stop="86050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84639" e_stop="86050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="84639" e_stop="86050" e_length="1412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84639" stop="85316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84640" stop="85183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84674" stop="85526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84740" stop="85430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85208" stop="86050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85375" stop="86029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATTGGAGTAATCAAATCATATGTGTTTTGATGTTCCTGAGAG</gDNA_template>
            <first_frame> G  G  G  R  R  R  N  Q  K  W  E  Q  A  V  I  R  T  S  K  M  V  P  T  N  S  R  D  A  P  R  S  T  P  T  R  L  H  G  T  Y  T  L  *  I  G  V  F  A  R  I  R  S  I  V  S  P  L  L  A  C  S  S  S  T  K  T  E  L  R  L  C  S  L  M  T  L  M  V  R  F  G  P  T  R  N  S  H  L  S  T  R  I  R  L  R  K  L  S  S  Y  P  I  R  S  A  R  S  R  T  L  S  L  P  L  V  I  I  S  G  F  G  E  S  P  M  I  I  V  G  L  T  *  R  V  F  L  I  T  T  G  T  V  S  F  P  V  R  *  P  H  L  T  G  M  K  L  S  R  G  G  L  V  R  R  V  L  I  L  P  V  L  Y  G  I  L  R  G  R  L  S  I  P  S  *  L  L  M  I  R  R  F  M  I  L  L  G  V  G  L  E  F  L  L  L  F  Q  L  M  G  L  L  G  F  L  I  F  V  I  R  S  T  L  R  *  S  M  R  V  L  S  L  I  L  L  L  Y  A  L  D  G  T  S  R  I  L  G  I  W  P  P  *  *  W  T  V  Q  R  L  *  F  W  T  S  V  S  R  H  C  R  W  W  N  Y  R  G  T  R  L  V  *  M  P  L  P  G  L  L  T  A  L  A  I  F  V  L  L  V  T  T  H  R  R  L  S  G  I  S  L  Q  W  V  S  Q  *  K  V  D  W  I  Q  F  W  L  I  L  Q  V  Q  K  S  S  S  F  S  G  P  H  P  S  L  I  G  L  P  L  H  S  P  T  S  F  R  F  *  G  C  E  L  A  I  L  A  R  T  S  S  S  C  S  S  I  I  L  F  S  L  P  A  S  D  I  S  P  S  K  N  F  P  F  F  G  I  L  F  P  K  *  K  T  R  L  I  T  D  N  S  *  T  *  I  A  F  A  I  F  A  P  R  A  L  L  S  *  K  *  L  E  S  T  L  S  V  G  F  S  *  S  A  L  L  W  L  V  C  N  I  C  S  L  Y  Y  V  Y  *  K  P  Q  L  E  *  S  N  H  M  C  F  D  V  P  E   </first_frame>
            <second_frame>  A  A  E  E  E  E  I  R  N  G  S  K  Q  *  S  E  P  A  R  W  F  R  R  T  A  E  T  L  R  D  L  H  L  R  G  S  M  A  H  I  R  Y  E  L  E  C  S  Q  G  *  E  V  S  S  R  H  C  *  L  A  R  A  V  P  K  P  S  *  D  C  A  A  *  *  L  *  W  *  D  S  V  R  P  E  T  L  I  *  A  P  V  S  A  Y  E  S  Y  L  H  T  R  *  G  V  P  E  A  G  P  Y  R  Y  L  *  *  L  S  Q  D  L  A  S  L  Q  *  *  *  S  G  *  H  E  E  S  S  *  *  Q  P  E  Q  *  V  F  R  S  V  N  L  I  *  L  E  *  S  *  A  E  A  D  W  Y  V  E  Y  *  Y  Y  L  Y  Y  M  G  Y  *  E  G  D  C  R  Y  P  V  N  C  S  *  *  G  G  L  *  Y  C  L  G  W  G  W  S  F  C  F  C  F  S  *  W  V  C  *  G  F  *  S  S  *  *  G  A  L  Y  D  N  L  *  E  F  *  A  *  Y  S  S  C  T  P  W  M  E  Q  A  G  S  *  V  Y  G  H  H  N  N  G  Q  C  K  G  C  S  F  G  H  P  F  P  D  T  A  G  G  G  T  T  E  A  P  G  *  C  E  C  H  C  L  G  S  S  Q  L  L  P  Y  L  Y  C  W  *  R  L  T  G  A  Y  L  G  S  L  F  N  G  S  A  N  R  R  W  I  G  S  N  S  G  L  Y  C  R  C  R  N  R  A  A  S  V  V  L  I  P  A  *  L  G  C  H  C  I  L  Q  Q  A  S  D  S  K  G  V  N  *  L  F  S  L  A  L  Q  A  A  A  Q  V  S  S  Y  S  V  F  L  L  A  T  F  L  Q  V  K  I  F  L  F  L  A  F  Y  S  Q  N  E  K  R  G  L  L  L  T  I  V  K  P  E  *  L  L  L  S  L  H  L  G  L  Y  Y  H  R  S  N  W  N  P  H  C  L  W  D  S  V  S  Q  H  Y  C  G  W  S  A  T  S  V  A  C  I  M  F  I  E  N  R  N  W  S  N  Q  I  I  C  V  L  M  F  L  R  </second_frame>
            <third_frame>   R  R  K  K  K  K  S  E  M  G  A  S  S  D  P  N  Q  Q  D  G  S  D  E  Q  Q  R  R  S  E  I  Y  T  Y  E  A  P  W  H  I  Y  A  M  N  W  S  V  R  K  D  K  K  Y  R  L  A  I  A  S  L  L  E  Q  Y  Q  N  R  V  E  I  V  Q  L  D  D  S  N  G  E  I  R  S  D  P  K  L  S  F  E  H  P  Y  P  P  T  K  V  I  F  I  P  D  K  E  C  Q  K  P  D  L  I  A  T  S  S  D  Y  L  R  I  W  R  V  S  N  D  N  S  R  V  D  M  K  S  L  L  N  N  N  R  N  S  E  F  S  G  P  L  T  S  F  D  W  N  E  A  E  P  R  R  I  G  T  S  S  I  D  T  T  C  T  I  W  D  I  E  R  E  T  V  D  T  Q  L  I  A  H  D  K  E  V  Y  D  I  A  W  G  G  V  G  V  F  A  S  V  S  A  D  G  S  V  R  V  F  D  L  R  D  K  E  H  S  T  I  I  Y  E  S  S  E  P  D  T  P  L  V  R  L  G  W  N  K  Q  D  P  R  Y  M  A  T  I  I  M  D  S  A  K  V  V  V  L  D  I  R  F  P  T  L  P  V  V  E  L  Q  R  H  Q  A  S  V  N  A  I  A  W  A  P  H  S  S  C  H  I  C  T  A  G  D  D  S  Q  A  L  I  W  D  L  S  S  M  G  Q  P  I  E  G  G  L  D  P  I  L  A  Y  T  A  G  A  E  I  E  Q  L  Q  W  S  S  S  Q  P  D  W  V  A  I  A  F  S  N  K  L  Q  I  L  R  V  *  I  S  Y  S  R  S  H  F  K  Q  L  L  K  Y  H  L  I  Q  S  S  C  *  R  H  F  S  K  *  K  F  S  F  F  W  H  F  I  P  K  M  K  N  E  A  Y  Y  *  Q  *  L  N  L  N  S  F  C  Y  L  C  T  *  G  S  I  I  I  E  V  T  G  I  H  I  V  C  G  I  Q  L  V  S  I  I  V  V  G  L  Q  H  L  *  L  V  L  C  L  L  K  T  A  I  G  V  I  K  S  Y  V  F  *  C  S  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84641" stop="85708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKKKKSEMGASSDPNQQDGSDEQQRRSEIYTYEAPWHIYAMNWSVRKDKKYRLAIASLLEQYQNRVEIVQLDDSNGEIRSDPKLSFEHPYPPTKVIFIPDKECQKPDLIATSSDYLRIWRVSNDNSRVDMKSLLNNNRNSEFSGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPIEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSNKLQILRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="87221" PGL_stop="87585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87221" e_stop="87585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87221" e_stop="87585" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87221" stop="87585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCCTTCATGATCTAATTTTTAAGATTCGGGTTATGGATTTATGTATGGATACGATTGCGGGGGTTCACCTAAAAATGATTAGAATGTCTAAAATAAGTTATAAAACCTAAATTATGAGATATTATGAAGAGAATCTCATATTGAGATTAAAGGAAAAGGAGTGACAAAGAAATTTATATATAAAAGGTATTCTATTTTCTTCAATTTCAACTTAGATTTTGCATTGATTATTGAAATTATTAAAACTATCCTGACTTTCCCCGTCGATTTTGCTCAAAGCACCCTAAATCGGTTGACCAAATTGGACACAGATCCCACACCCACACTCATGTCGTGTTGACATGGGTGCGGCACCATAAGT</gDNA_template>
            <first_frame> W  I  L  H  D  L  I  F  K  I  R  V  M  D  L  C  M  D  T  I  A  G  V  H  L  K  M  I  R  M  S  K  I  S  Y  K  T  *  I  M  R  Y  Y  E  E  N  L  I  L  R  L  K  E  K  E  *  Q  R  N  L  Y  I  K  G  I  L  F  S  S  I  S  T  *  I  L  H  *  L  L  K  L  L  K  L  S  *  L  S  P  S  I  L  L  K  A  P  *  I  G  *  P  N  W  T  Q  I  P  H  P  H  S  C  R  V  D  M  G  A  A  P  *   </first_frame>
            <second_frame>  G  S  F  M  I  *  F  L  R  F  G  L  W  I  Y  V  W  I  R  L  R  G  F  T  *  K  *  L  E  C  L  K  *  V  I  K  P  K  L  *  D  I  M  K  R  I  S  Y  *  D  *  R  K  R  S  D  K  E  I  Y  I  *  K  V  F  Y  F  L  Q  F  Q  L  R  F  C  I  D  Y  *  N  Y  *  N  Y  P  D  F  P  R  R  F  C  S  K  H  P  K  S  V  D  Q  I  G  H  R  S  H  T  H  T  H  V  V  L  T  W  V  R  H  H  K  </second_frame>
            <third_frame>   D  P  S  *  S  N  F  *  D  S  G  Y  G  F  M  Y  G  Y  D  C  G  G  S  P  K  N  D  *  N  V  *  N  K  L  *  N  L  N  Y  E  I  L  *  R  E  S  H  I  E  I  K  G  K  G  V  T  K  K  F  I  Y  K  R  Y  S  I  F  F  N  F  N  L  D  F  A  L  I  I  E  I  I  K  T  I  L  T  F  P  V  D  F  A  Q  S  T  L  N  R  L  T  K  L  D  T  D  P  T  P  T  L  M  S  C  *  H  G  C  G  T  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RESHIEIKGKGVTKKFIYKRYSIFFNFNLDFALIIEIIKTILTFPVDFAQSTLNRLTKLDTDPTPTLMSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 313 chains have been computed
$ 
$ memory statistics:
$ 255464 bytes spliced alignments in total
$ 123 spliced alignments have been stored
$ 2076 bytes was the average size of a spliced alignment
$ 39664 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1525 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 330 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:22:00
-->
