<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:28:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395636" ref_strand="+" ref_description="SGN-E395636 [TUS-16-L22](-)">
      <seq>ctataccagaaaaattatcatcagaaggaaaggatttccttcagtgctgctttcggaggaaacctgcagataggccatcagctatgatgctacttgaacatgcttttttacgtagtactagttcccttgagcatagtatcaatgttgctggttgctcagaggattctccggggaagaaattccatgataccctgagtcctaagaacccaatcaaccccaaaaaggaacaaaaaccactgttaccaggaacatctggcaggcaagcaaaatcaccatgtagcagtgaaacttgccggcaaactcaacctgaaacctgtgaatatggagcaacttctcaccattctccacgttctgcacttgaagtctttccctgtattacttcaatggagctgaactcgagttcacgtgcagccagcccctcaagcgttcctagtagctttcgcctgggacctgaaaacagaagtccttatagaatcatagggaaggaaattccaaacctctgtataagatcataaatgaatggagaggagggaaattcatgtacagatcaggagaattagatacagaaaacttcagttggatgattagtcaaaatgttgccatatgtaatattcatgttgtatttgaaggcatacatatctttataacatattcatgaagaattgaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="3324" stop="1763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3024" g_stop="2840" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2712" g_stop="2615" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="283" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2448" g_stop="2064" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="668" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E395636" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3024" e_stop="2840"/>
          <exon e_start="2712" e_stop="2615"/>
          <exon e_start="2448" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCATGTGAGTGGTACATGCTGCTAGCCTGCTACTGATGTGACATTAAGGGTTAACGTCACTGTATTATTTGTGAGATTCTCTAAATTTTGTTTTCCAAATGATTTTGAACTCTGAATTCATTACATTTCAGGATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAGGTAAAAACTGTCTTTGAGTTTTTCATGTTATAAATACCACACACTTTATTCTGTGAGATTATTTTTTCGCGTATTAGTATCTACAATTGCAGCTAGATACTATATCTCACGTTATGCCATTAACTGTCACGTCCATCTTATGCAAGTTAAACTATGTCTCTTCCAGTGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</genome_strand>
        <mrna_strand>CTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGATGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT...............................................................................................................................GATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAG......................................................................................................................................................................TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396667" ref_strand="+" ref_description="SGN-E396667 [TUS-43-D3](-)">
      <seq>ccattctccacgttttgcacttgaagtctttccctgtattacttcaatggagctgaactcgagttcacgtgcagccagcccctcaagcgttcctagtagctttcgcctgggacctgaaaacagaagtccttatagaatcatagggaaggaaattccaaacctctgtataagatcataaatgaatggagaggagggaaattcatgtacagatcaggagaattagatacagaaaacttcagttggatgattagtcaaaatgttgccatatgtaatattcatgttgtatttgaaggcatacatatctttataacatattcatgaagaattgaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="2694" stop="1763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2394" g_stop="2064" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="341"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E396667" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2394" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</genome_strand>
        <mrna_strand>CCATTCTCCACGTTTTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546072" ref_strand="+" ref_description="SGN-E546072 [TUS-69-D24](-)">
      <seq>tgcgcaaagatgccaatccagagcttgccttagctgttgatatatgagcctggggctgtactgttattgagatgtttactggacagcccccttggggcgaacttagttgggtgcaagcaatgttcggtgtcctgaacaaatcacccacctataccagaaaaattatcatcagaaggaaaagatttccttcagtgctgctttcggaggaaacctgcagataggccatcagctatgatgctacttgaacatgcttttttacgtagtactagttcccttgagcatagtatcaatgttgctggttgctcagaggattctccggggaagaaattccatgataccctgagtcctaagaacccaatgaaccacaaaaaggaacaaaaaccactattaccaggaacatctggcaggcaagcaaaatcaccatgtagcagtgaaacttgccggcaaactcaacctgaaacctgtgaatatggagcaacttctcaccattctccacgttctgcacttgaagtctttccctgtattacttcaatggagctgaactcgagttcacgtgtagccagcccctcaagcgttcctagtagctttcgcctgggacctgaaagcagaagtccttatagaatcatagggaaggaaattccaaacctctgtataagatcataaatgaatggagaggagggaaattcatgtacagatcaggagaattagatacagaaaacttcagttggatgattagtcaaaatgttgccatatgtaatattcatgttgtatttgaaggcatacatatctttgtaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="3696" stop="1781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3396" g_stop="3287" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3286" i_stop="3062" i_length="225">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3061" g_stop="2840" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="333" r_length="223" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2712" g_stop="2615" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="431" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2448" g_stop="2073" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="807" r_length="376" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E546072" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3396" e_stop="3287"/>
          <exon e_start="3061" e_stop="2840"/>
          <exon e_start="2712" e_stop="2615"/>
          <exon e_start="2448" e_stop="2073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCT-GGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGGGTAAGTGTTTGAAACATCTCATTTTGAGAACAATGTAATCGCATTACAAGCTTAAATATATTTGTGAGCTTTTAGTTGTCAATATAGCATCATAGCTTTTTAATATATGAGCAAGGCTGACTGGTCGGCTTAATCTCAATAAAGCCAGAGCTATGTTCTTACTTTTCAGGCGTTCTCGAATTGGTTTCTGTGATTGTCTAAATGTTCATGGTTTGGCTTTATTAGGTGCAAGCAATGTTCGGTGTCTTGAACAAATCA-CCACCTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCATGTGAGTGGTACATGCTGCTAGCCTGCTACTGATGTGACATTAAGGGTTAACGTCACTGTATTATTTGTGAGATTCTCTAAATTTTGTTTTCCAAATGATTTTGAACTCTGAATTCATTACATTTCAGGATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAGGTAAAAACTGTCTTTGAGTTTTTCATGTTATAAATACCACACACTTTATTCTGTGAGATTATTTTTTCGCGTATTAGTATCTACAATTGCAGCTAGATACTATATCTCACGTTATGCCATTAACTGTCACGTCCATCTTATGCAAGTTAAACTATGTCTCTTCCAGTGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAA</genome_strand>
        <mrna_strand>TGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATAT-GAGCCTGGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGG.................................................................................................................................................................................................................................GTGCAAGCAATGTTCGGTGTCCTGAACAAATCACCCACCTATACCAGAAAAATTATCATCAGAAGGAAAAGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGATGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT...............................................................................................................................GATACCCTGAGTCCTAAGAACCCAATGAACCACAAAAAGGAACAAAAACCACTATTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAG......................................................................................................................................................................TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGTAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAGCAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTGTAACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549311" ref_strand="+" ref_description="SGN-E549311 [TUS-69-D24]">
      <seq>ctgtgttgcgcaaagatgccaatccagagcttgccttagctgttgatatatggagcctgggctgtactgttattgagatgtttactggacagcccccttggggcgaacttagttgggtgcaagcaatgttcggtgtcctgaacaaatcaccacctataccagaaaaattatcatcagaaggaaaagatttccttcagtgctgctttcggaggaaacctgcagataggccatcagctatgatgctacttgaacatgcttttttacgtagtactagttcccttgagcatagtatcaatgttgctggttgctcagaggattctccggggaagaaattccatgataccctgagtcctaagaacccaatgaaccacaaaaaggaacaaaaaccactattaccaggaacatctggcaggcaagcaaaatcaccatgtagcagtgaaacttgccggcaaactcaacctgaaacctgtgaatatggagcaacttctcaccattctccacgttctgcacttgaagtctttccctgtattacttcaatggagctgaactcgagttcacgtgtagccagcccctcaagcgttcctagtagctttcgcctgggacctgaaagcagaagtccttatagaatcatagggaaggaaattccaaacctctgtataagatcataaatgaatggagaggaaggaaattcatgtacagatcaggagaattagatacagaaaacttcagttggatgattagtcnnaaatgtgccatatgtaatattcatgttgtatttgaaggcatacatatcttttgtacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="3702" stop="1789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3402" g_stop="3287" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3286" i_stop="3062" i_length="225">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3061" g_stop="2840" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="338" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2712" g_stop="2615" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="436" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2448" g_stop="2097" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="788" r_length="352" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="800" polyA_stop="815"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E549311" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3402" e_stop="3287"/>
          <exon e_start="3061" e_stop="2840"/>
          <exon e_start="2712" e_stop="2615"/>
          <exon e_start="2448" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGGGTAAGTGTTTGAAACATCTCATTTTGAGAACAATGTAATCGCATTACAAGCTTAAATATATTTGTGAGCTTTTAGTTGTCAATATAGCATCATAGCTTTTTAATATATGAGCAAGGCTGACTGGTCGGCTTAATCTCAATAAAGCCAGAGCTATGTTCTTACTTTTCAGGCGTTCTCGAATTGGTTTCTGTGATTGTCTAAATGTTCATGGTTTGGCTTTATTAGGTGCAAGCAATGTTCGGTGTCTTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCATGTGAGTGGTACATGCTGCTAGCCTGCTACTGATGTGACATTAAGGGTTAACGTCACTGTATTATTTGTGAGATTCTCTAAATTTTGTTTTCCAAATGATTTTGAACTCTGAATTCATTACATTTCAGGATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAGGTAAAAACTGTCTTTGAGTTTTTCATGTTATAAATACCACACACTTTATTCTGTGAGATTATTTTTTCGCGTATTAGTATCTACAATTGCAGCTAGATACTATATCTCACGTTATGCCATTAACTGTCACGTCCATCTTATGCAAGTTAAACTATGTCTCTTCCAGTGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATAC</genome_strand>
        <mrna_strand>CTGTGTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGG.................................................................................................................................................................................................................................GTGCAAGCAATGTTCGGTGTCCTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAAGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGATGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT...............................................................................................................................GATACCCTGAGTCCTAAGAACCCAATGAACCACAAAAAGGAACAAAAACCACTATTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAG......................................................................................................................................................................TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGTAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAGCAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAAGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCNNAAATGTGCCATATGTAATATTCATGTTGTATTTGAAGGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357222" ref_strand="+" ref_description="SGN-E357222 [cLHT-17-J9]">
      <seq>tgtgttgcgcaaagatgccaatccagagcttgccttagctgttgatatatggagcctgggctgtactgttattgagatgtttactggacagcccccttggggcgaacttagttgggtgcaagcaatgttcggtgtcctgaacaaatcaccacctataccagaaaaattatcatcagaaggaaaagatttccttcagtgctgctttcggaggaaacctgcagataggccatcagctatgatgctacttgaacatgcttttttacgtagtactagttcccttgagcatagtatcaatgttgctggttgctcagaggattctccggggaagaaattccatgataccctgagtcctaagaacccaatgaaccacaaaatggaacaaaaaccactattaccaggaacatctggctggcaagcaaaatcaccatgtagcagtgaaacttgccggcaaactcaacctgaaacctgtgaatatggagcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="3701" stop="2100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3401" g_stop="3287" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3286" i_stop="3062" i_length="225">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3061" g_stop="2840" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="337" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2712" g_stop="2615" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="435" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2448" g_stop="2400" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="484" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E357222" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3401" e_stop="3287"/>
          <exon e_start="3061" e_stop="2840"/>
          <exon e_start="2712" e_stop="2615"/>
          <exon e_start="2448" e_stop="2400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGGGTAAGTGTTTGAAACATCTCATTTTGAGAACAATGTAATCGCATTACAAGCTTAAATATATTTGTGAGCTTTTAGTTGTCAATATAGCATCATAGCTTTTTAATATATGAGCAAGGCTGACTGGTCGGCTTAATCTCAATAAAGCCAGAGCTATGTTCTTACTTTTCAGGCGTTCTCGAATTGGTTTCTGTGATTGTCTAAATGTTCATGGTTTGGCTTTATTAGGTGCAAGCAATGTTCGGTGTCTTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCATGTGAGTGGTACATGCTGCTAGCCTGCTACTGATGTGACATTAAGGGTTAACGTCACTGTATTATTTGTGAGATTCTCTAAATTTTGTTTTCCAAATGATTTTGAACTCTGAATTCATTACATTTCAGGATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAGGTAAAAACTGTCTTTGAGTTTTTCATGTTATAAATACCACACACTTTATTCTGTGAGATTATTTTTTCGCGTATTAGTATCTACAATTGCAGCTAGATACTATATCTCACGTTATGCCATTAACTGTCACGTCCATCTTATGCAAGTTAAACTATGTCTCTTCCAGTGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACT</genome_strand>
        <mrna_strand>TGTGTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGG.................................................................................................................................................................................................................................GTGCAAGCAATGTTCGGTGTCCTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAAGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGATGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT...............................................................................................................................GATACCCTGAGTCCTAAGAACCCAATGAACCACAAAATGGAACAAAAACCACTATTACCAGGAACATCTGGCTGGCAAGCAAAATCACCATGTAGCAG......................................................................................................................................................................TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398603" ref_strand="+" ref_description="SGN-E398603 [TUS-43-D3]">
      <seq>tcctctgctgtgccactgccgttgccgctcccggagctcaattctctgcctaaacagaactcggttcactctaatttgccggttagagttgacagggagcttttaagtcctcctcttgccagggaaacttttgatcgaactccagctgaggtgaaaagttctcagcatccaagatcatctactccaacttatcggcgtaggggtttccctcaggatctgaacgccgagggtgttgaattcaggttgaacgttcctgctagaagtgccccaagtagtggttttacaagccctgtccgaagcccaaaaaggtttagcacacaggacctttttcatcatccattgcatcaggcctcatcatcaccttcagaggcttacgctttccaactttcacccacaagggttataaatagcgctgatcattctccagtgagtagcccaattttaccaagttcagctaacagaatcaggaacagcaaaagtgttgctttgcattcacatcataaatctcttccggaaagttctctaggttggaatgaagctaacaacaacaatgtgcatccactaccccttccaccaggagttccacgacaaccagaattatgtaccatgcccagcaataatggataaaccttgtgtatcaccacagaagggtcaatggctaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="6741" stop="4764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6441" g_stop="6320" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6319" i_stop="5607" i_length="713">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.072" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5606" g_stop="5063" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="667" r_length="545" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E398603" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6441" e_stop="6320"/>
          <exon e_start="5606" e_stop="5063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAGGTTAGTGAACCCATTGTTCAGAATTTTGTACTACGTCTTAGCTTTCGTTTTACTCTGTTTCGAAATGAATGACTCTTTTCATCTTTGATTGTAACTGTACATTAAATAACATGTTGATATATTTTGTGTTTCTTTAGTTTAAGATTACGAGATTTAAAAATAGATTTTACTTTGTTAAATCTTGTGTCAAGTTAAAATCAGTCCGACAAATTGACATGGAGTGATTTATTTATCGAACTCTTTAGTTTTTTCTTACATGTTTGTCTTATGCTCTAAGTAAAAACGCTACCTTTCTGAGTGAAGTACTGTTTAGCCGATTCATACTGGTTTGGGATTGAGGTGTAGTTATTTTCGGTTTGATGATGAAAACTTTCCACCTTAGGTATGTAAAGGGATTTAGTAGTAGTAGAAGGTAGTTGGTTCGAATTTGAAGCAGTTTTTGGGTGGATTGACTGCAGTAACATTTTATAGGTCATTTTACCATAAAAGAACCATTGTTTTTCCTTTTTTGGGTTGTGAATTAACTTCAGTAACCTTTATAAGGTCCACCGTAAAGGTAGGTTCGGAATTGTGAAAGAGCATGTGGTTTATAGCTGTTTCAAATGATGATTTATAGTGTGCTACTTTGTTTTTGGGTAAAAATGTTCCATTAGCTATGATGATTGTAAGGACAAAAACTGAACGCGGAAATGTTAACCTGTTGCAAGTTGCAGGGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGGTCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACGCAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAAT-ATGGATAAACCTTGTGTATCACCAACAAAGGGTCAATGGCTAAAGGGG</genome_strand>
        <mrna_strand>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGATCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACACAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCCCAGCAATAATGGATAAACCTTGTGTATCACCACAGAAGGGTCAATGGCTAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395637" ref_strand="+" ref_description="SGN-E395637 [TUS-16-L22]">
      <seq>tcctctgctgtgccactgccgttgccgctcccggagctcaattctctgcctaaacagaactcggttcactctaatttgccggttagagttgacagggagcttttaagtcctcctcttgccagggaaacttttgatcgaactccagctgaggtgaaaagttctcagcatccaagatcatctactccaacttatcggcgtaggggtttccctcaggatctgaacgccgagggtgttgaattcaggttgaacgttcctgctagaagtgccccaagtagtggttttacaagccctgtccgaagcccaaaaaggtttagcacacaggacctttttcatcatccattgcatcaggcctcatcatcaccttcagaggcttacgctttccaactttcacccacaagggttataaatagcgctgatcattctccagtgagtagcccaattttaccaagttcagctaacagaatcaggaacagcaaaagtgttgctttgcattcacatcataaatctcttccggaaagttctctaggttggaatgaagctaacaacaacaatgtgcatccactaccccttccaccaggagttccacgacaaccagaattatgtaccatgcacagcaatatggataaaccttgtgtatcaccacaaagggtcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="6741" stop="4773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6441" g_stop="6320" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6319" i_stop="5607" i_length="713">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.072" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5606" g_stop="5073" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="655" r_length="533" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E395637" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6441" e_stop="6320"/>
          <exon e_start="5606" e_stop="5073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAGGTTAGTGAACCCATTGTTCAGAATTTTGTACTACGTCTTAGCTTTCGTTTTACTCTGTTTCGAAATGAATGACTCTTTTCATCTTTGATTGTAACTGTACATTAAATAACATGTTGATATATTTTGTGTTTCTTTAGTTTAAGATTACGAGATTTAAAAATAGATTTTACTTTGTTAAATCTTGTGTCAAGTTAAAATCAGTCCGACAAATTGACATGGAGTGATTTATTTATCGAACTCTTTAGTTTTTTCTTACATGTTTGTCTTATGCTCTAAGTAAAAACGCTACCTTTCTGAGTGAAGTACTGTTTAGCCGATTCATACTGGTTTGGGATTGAGGTGTAGTTATTTTCGGTTTGATGATGAAAACTTTCCACCTTAGGTATGTAAAGGGATTTAGTAGTAGTAGAAGGTAGTTGGTTCGAATTTGAAGCAGTTTTTGGGTGGATTGACTGCAGTAACATTTTATAGGTCATTTTACCATAAAAGAACCATTGTTTTTCCTTTTTTGGGTTGTGAATTAACTTCAGTAACCTTTATAAGGTCCACCGTAAAGGTAGGTTCGGAATTGTGAAAGAGCATGTGGTTTATAGCTGTTTCAAATGATGATTTATAGTGTGCTACTTTGTTTTTGGGTAAAAATGTTCCATTAGCTATGATGATTGTAAGGACAAAAACTGAACGCGGAAATGTTAACCTGTTGCAAGTTGCAGGGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGGTCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACGCAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAATATGGATAAACCTTGTGTATCACCAACAAAGGGTCAATG</genome_strand>
        <mrna_strand>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGATCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACACAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAATATGGATAAACCTTGTGTATCACC-ACAAAGGGTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206442" ref_strand="+" ref_description="SGN-E206442 [cLEC-23-M3]">
      <seq>cctctgctgtgccactgccgttgccgctcccggagctcaattctctggcgtaaacagaactcggttcactctaatttgccggttagagttgacagggagcttttaagtcctcctcttgccagggaaacttttgatcgaactccagctgaggtgaaaagttctcagcatccaagatcatctactccaacttatcggcgtaggggtttccctcaggatctgaacgccgagggtgttgaattcaggttgaacgttcctgctagaagtgccccaagtagtggttttacaagccctgtccgaagcccaaaaaggtttagcacacaggacctttttcatcatccattgcatcaggcctcatcatcaccttcagaggcttacgctttccaactttcacccacaagggttataaatagcgctgatcattctccagtgagtagcccaattttaccaagttcagctaacagaatcaggaacagcaaaagtgttgctttgcattcacatcataaatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="6740" stop="4920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6440" g_stop="6320" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6319" i_stop="5607" i_length="713">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.072" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5606" g_stop="5220" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="509" r_length="387" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E206442" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6440" e_stop="6320"/>
          <exon e_start="5606" e_stop="5220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCT-GCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAGGTTAGTGAACCCATTGTTCAGAATTTTGTACTACGTCTTAGCTTTCGTTTTACTCTGTTTCGAAATGAATGACTCTTTTCATCTTTGATTGTAACTGTACATTAAATAACATGTTGATATATTTTGTGTTTCTTTAGTTTAAGATTACGAGATTTAAAAATAGATTTTACTTTGTTAAATCTTGTGTCAAGTTAAAATCAGTCCGACAAATTGACATGGAGTGATTTATTTATCGAACTCTTTAGTTTTTTCTTACATGTTTGTCTTATGCTCTAAGTAAAAACGCTACCTTTCTGAGTGAAGTACTGTTTAGCCGATTCATACTGGTTTGGGATTGAGGTGTAGTTATTTTCGGTTTGATGATGAAAACTTTCCACCTTAGGTATGTAAAGGGATTTAGTAGTAGTAGAAGGTAGTTGGTTCGAATTTGAAGCAGTTTTTGGGTGGATTGACTGCAGTAACATTTTATAGGTCATTTTACCATAAAAGAACCATTGTTTTTCCTTTTTTGGGTTGTGAATTAACTTCAGTAACCTTTATAAGGTCCACCGTAAAGGTAGGTTCGGAATTGTGAAAGAGCATGTGGTTTATAGCTGTTTCAAATGATGATTTATAGTGTGCTACTTTGTTTTTGGGTAAAAATGTTCCATTAGCTATGATGATTGTAAGGACAAAAACTGAACGCGGAAATGTTAACCTGTTGCAAGTTGCAGGGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGGTCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACGCAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCT</genome_strand>
        <mrna_strand>CCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGGCGTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGATCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACACAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700675" ref_strand="+" ref_description="SGN-E700675 [FA13DC11]">
      <seq>tcatttactaaaaacacccgccgaaaaaaataagctgccacatttccatggcagcagccgcctgttcctccgccgtattcaaacgggcagcttcaaccgccgcccaaattctccgacaccagcacttctcctcagcggcggcggcagcggagattcaccggccgggggatttctactgtgacgatagtgaaggcgaagaaagtgcagtgtatcagcataccctcaaattccaacgcccatcaacgataacacaacaccagcttctccataactccgtcagtctcataggaaaaattgattacccgttcaaaagagttaacactaaaaacggctcttttggggttcatactttactcagtgtctccggttcttctcaatcccgtccatcttttaaagttatgttgaagatgtgggatgaaatggcggaagtgtcaatggagcatttgaaatcaaatgacctggtatatgtttggggtcatttgggatcatacatcaagactgatgagaatggtaaacatcagatgagataccaggtagatgtgaaggaaataaatttcgtgactccagatgttcaagccttagcaaccccagaatttcagaagaaagaatcaagaggtgaagatgaattggagaattacaggaaccgtatccaattgtggcaaattttcttcgctagcccttttgaatggatggacttcaggaagagtaaagtcaatcctaaataccctgactttaagaacagagatactggtgaagttctctggctcaggacagatgatccaccgtggataaaaagacagttggatatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="10753" stop="14335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11047" g_stop="11440" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11441" i_stop="11527" i_length="87">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="11666" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="533" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11667" i_stop="12941" i_length="1275">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12942" g_stop="13023" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="615" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13024" i_stop="13839" i_length="816">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13840" g_stop="14035" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="811" r_length="196" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E700675" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11047" e_stop="11440"/>
          <exon e_start="11528" e_stop="11666"/>
          <exon e_start="12942" e_stop="13023"/>
          <exon e_start="13840" e_stop="14035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGACTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAAGTGAGACTCTAATTTTACTACTATTTGCAAATTAATTACTATAACTATTAGTCGAGTGATCGTCTGAGAAATTTTAACACTCTGCAGAGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATAAGATGAGATACCAGGTTTGTAACCACAAAAATAATACTGGTAAATAGAATAAAAATGTCATCTTTGATATAGGTTAACAGCTTTGATACAAATTTGTCTAGTATTTGTTATAGGTTAACTACGATGTAGGGAATCTTAGTAGCTCAGTTAGTTGGTTGTCTATCTGAACTTTACCTTCTTGGTGAAGGTTCAATTTTCCACCTTGTAATTTGTCTACAACATGCAATGGTTATTGTGAATTTGGCTGGTTTTTCGTAAGGGCCTGTGGGATAGAATTGGTGAAAGAGACGGGTTCAGTTGGGATTATTGGACCGAGTAAAATGTTGGAGAGTGTTATCTGGGATCCAGGCCTAAATAGCAATTGGTTAAAAAGGATTGTGTGTTAGAAAGAAGAGTTCTATGCCTATTATGTTGAAGCTTTGGCTCAGTCTGTTACTGGCTACCTATTTCCATGTTATGCCCATTAGTATTGTTCATTATTAGCTCATTGCTCCAATTCTCAGTTGTAATTTTGATTCGGTAGATATAATATACATTAGTGTTGTATTGAGAAATTTGGATTGTTAGTAATGACCTAGGGATGTTGGTTATCCAGCAAGCGTAGGACTGCCCATTGTGTTATGATCTAGGATTATGACAACTTTCAGTTATTTGTGAAAAAGCTCGACTGAATTGCAATAAGGAGGACAAGAGTATATGGAAGTACTTGGATACAAAATTGCAAGTACCTTTCTTTTGTTTAACGAACTAAGTGACGTTTTTGGTTGGGACACCGAGGCAAGGATCATCCTTTAAAAAATCATTCCAATTCAGCTAATTATTCGACTTTGGATGCAAAAGATTTGTAGATGGAGCTAACCATTTCAATAAGATATTGTTCCATTTACTCTCTTTGACATAGCACACAATTTTATCTTTCAGAAGTGATTAATTAGAATTGCATCTGTCATTTGGTGTTTAGGTTTCCTATATGAGTTGCCTTTTTTTTTTCCGGGGTGATTGGGGGATATGATCAGCTTTGAATATCTCTTAAAAGACAAAGGCTAATAGAGGAAGTTGTGACATAAGTGCACCTATTCTTTAACAGTTAAATTTTCTCCTGGATCTTTAAAGAATAAAAAGGATGGGAAATACCCTCAAGAAAACATGATCCCGCATTAGATGTGTTTTTGTAAATTTGAGATCCTGTGCTGAACAAAATGCTTTTTCTTTTGCCATATTTTTATGTAGCTTGTGCTGCACAAAAATGTTTCCGTTTCATGTTTTCATGTACTGATTTTTTTGTGAAGGTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCGACCCCAGAATTTCAGAAGAAAGAATCAAGAGGTATATGTTGCCTTTCTGAGCATTTTTTATTAGTTATGATGTTCATAGATCGTAACCAATTGGCAGACATTTTCTATAGCGGAGTGCAATGGGCCTAAATAGAGTGTTGTACATGCAGCATGTCTGAATAATTGAAAATTAGCAAACAGTAGGAGGATAACTTCAACTAAATGAAGCTTCAGAACTAATAGAAATCAAATATCAACTTTTGACACATTCACCATAGCCTAATTTTAAAATATCCAAGTATGATTTTACTTAGCTTAGGAAAATGCACCTTATTGTAAGATACTCGTTGTCGCTTCCACCTTTCATTCTTCGAGTTAGAATGGATGGGTGGGAATTTCTGTCCTGACAACAGAAAGAACAAACAACTAAAGAGACTATAAAATGCACACATAATCCAGGTCTTAGTGATCCTTTTTTTTTAGTTCTCTTGCCCACAATGACCATTACATTTGGTTGATTTTTGGAACTAATGGGATATTGAGACATGAACTGAAATACGAACTTGCTCAGACATTCCTGCTAACAATTTTGCTGCTTTGAACGTTGTGTTGAAACATTTGACACTGAATGCTTGATTCTCCTCCTGTCCTTCGAAGTTCAATCAAGACTTTATCTAGAGCTACTCACAGGCGGAGACTTTGATGTGCCAAAACTTTTTTTAGCGCCAAACCAAAAAGCGTGATTACCCAGTAATCCAATTAAATCAAGCCTTAGAGAGATTGAAATCTGTTGATCCTACATACATATATATATATACTTCTTCAATGTCGTTAACTCATTTCTAGATACATTTACTTGCATTCTCAGGTGAAGATGAATTGGAGAACTACAGGAACCGGATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCCGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAGATGATCCACCATGGATAAAAAGACAGTTGGATATCCT</genome_strand>
        <mrna_strand>TCATTTACTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGGGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCATACCCTCAAATTCCAACGCCCATCAACGATAACACAACACCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCGTTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAA.......................................................................................AGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATCAGATGAGATACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCAACCCCAGAATTTCAGAAGAAAGAATCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGATGAATTGGAGAATTACAGGAACCGTATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCTGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAGATGATCCACCGTGGATAAAAAGACAGTTGGATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708000" ref_strand="+" ref_description="SGN-E708000 [FA34CC05]">
      <seq>agatactaaaaacacccgccgaaaaaaataagctgccacatttccatggcagcagccgcctgttcctccgccgtattcaaacgggcagcttcaaccgccgcccaaattctccgacaccagcacttctcctcagcggcggcggcagcggagattcaccggccgggggatttctactgtgacgatagtgaaggcgaagaaagtgcagtgtatcagcataccctcaaattccaacgcccatcaacgataacacaacaccagcttctccataactccgtcagtctcataggaaaaattgattacccgttcaaaagagttaacactaaaaacggctcttttggggttcatactttactcagtgtctccggttcttctcaatcccgtccatcttttaaagttatgttgaagatgtgggatgaaatggcggaagtgtcaatggagcatttgaaatcaaatgacctggtatatgtttggggtcatttgggatcatacatcaagactgatgagaatggtaaacatcagatgagataccaggtagatgtgaaggaaataaatttcgtgactccagatgttcaagccttagcaaccccagaatttcagaagaaagaatcaagaggtgaagatgaattggagaattacaggaaccgtatccaattgtggcaaattttcttcgctagcccttttgaatggatggacttcaggaagagtaaagtcaatcctaaataccctgactttaagaacagagatactggtgaagttctctggctcaggacagaatgatccaccgtggataaaaagacagttggatatcctagattcaagattttctaagaacaattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="10749" stop="14361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11049" g_stop="11440" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11441" i_stop="11527" i_length="87">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="11666" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="531" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11667" i_stop="12941" i_length="1275">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12942" g_stop="13023" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="613" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13024" i_stop="13839" i_length="816">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13840" g_stop="14064" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="839" r_length="226" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E708000" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11049" e_stop="11440"/>
          <exon e_start="11528" e_stop="11666"/>
          <exon e_start="12942" e_stop="13023"/>
          <exon e_start="13840" e_stop="14064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAAGTGAGACTCTAATTTTACTACTATTTGCAAATTAATTACTATAACTATTAGTCGAGTGATCGTCTGAGAAATTTTAACACTCTGCAGAGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATAAGATGAGATACCAGGTTTGTAACCACAAAAATAATACTGGTAAATAGAATAAAAATGTCATCTTTGATATAGGTTAACAGCTTTGATACAAATTTGTCTAGTATTTGTTATAGGTTAACTACGATGTAGGGAATCTTAGTAGCTCAGTTAGTTGGTTGTCTATCTGAACTTTACCTTCTTGGTGAAGGTTCAATTTTCCACCTTGTAATTTGTCTACAACATGCAATGGTTATTGTGAATTTGGCTGGTTTTTCGTAAGGGCCTGTGGGATAGAATTGGTGAAAGAGACGGGTTCAGTTGGGATTATTGGACCGAGTAAAATGTTGGAGAGTGTTATCTGGGATCCAGGCCTAAATAGCAATTGGTTAAAAAGGATTGTGTGTTAGAAAGAAGAGTTCTATGCCTATTATGTTGAAGCTTTGGCTCAGTCTGTTACTGGCTACCTATTTCCATGTTATGCCCATTAGTATTGTTCATTATTAGCTCATTGCTCCAATTCTCAGTTGTAATTTTGATTCGGTAGATATAATATACATTAGTGTTGTATTGAGAAATTTGGATTGTTAGTAATGACCTAGGGATGTTGGTTATCCAGCAAGCGTAGGACTGCCCATTGTGTTATGATCTAGGATTATGACAACTTTCAGTTATTTGTGAAAAAGCTCGACTGAATTGCAATAAGGAGGACAAGAGTATATGGAAGTACTTGGATACAAAATTGCAAGTACCTTTCTTTTGTTTAACGAACTAAGTGACGTTTTTGGTTGGGACACCGAGGCAAGGATCATCCTTTAAAAAATCATTCCAATTCAGCTAATTATTCGACTTTGGATGCAAAAGATTTGTAGATGGAGCTAACCATTTCAATAAGATATTGTTCCATTTACTCTCTTTGACATAGCACACAATTTTATCTTTCAGAAGTGATTAATTAGAATTGCATCTGTCATTTGGTGTTTAGGTTTCCTATATGAGTTGCCTTTTTTTTTTCCGGGGTGATTGGGGGATATGATCAGCTTTGAATATCTCTTAAAAGACAAAGGCTAATAGAGGAAGTTGTGACATAAGTGCACCTATTCTTTAACAGTTAAATTTTCTCCTGGATCTTTAAAGAATAAAAAGGATGGGAAATACCCTCAAGAAAACATGATCCCGCATTAGATGTGTTTTTGTAAATTTGAGATCCTGTGCTGAACAAAATGCTTTTTCTTTTGCCATATTTTTATGTAGCTTGTGCTGCACAAAAATGTTTCCGTTTCATGTTTTCATGTACTGATTTTTTTGTGAAGGTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCGACCCCAGAATTTCAGAAGAAAGAATCAAGAGGTATATGTTGCCTTTCTGAGCATTTTTTATTAGTTATGATGTTCATAGATCGTAACCAATTGGCAGACATTTTCTATAGCGGAGTGCAATGGGCCTAAATAGAGTGTTGTACATGCAGCATGTCTGAATAATTGAAAATTAGCAAACAGTAGGAGGATAACTTCAACTAAATGAAGCTTCAGAACTAATAGAAATCAAATATCAACTTTTGACACATTCACCATAGCCTAATTTTAAAATATCCAAGTATGATTTTACTTAGCTTAGGAAAATGCACCTTATTGTAAGATACTCGTTGTCGCTTCCACCTTTCATTCTTCGAGTTAGAATGGATGGGTGGGAATTTCTGTCCTGACAACAGAAAGAACAAACAACTAAAGAGACTATAAAATGCACACATAATCCAGGTCTTAGTGATCCTTTTTTTTTAGTTCTCTTGCCCACAATGACCATTACATTTGGTTGATTTTTGGAACTAATGGGATATTGAGACATGAACTGAAATACGAACTTGCTCAGACATTCCTGCTAACAATTTTGCTGCTTTGAACGTTGTGTTGAAACATTTGACACTGAATGCTTGATTCTCCTCCTGTCCTTCGAAGTTCAATCAAGACTTTATCTAGAGCTACTCACAGGCGGAGACTTTGATGTGCCAAAACTTTTTTTAGCGCCAAACCAAAAAGCGTGATTACCCAGTAATCCAATTAAATCAAGCCTTAGAGAGATTGAAATCTGTTGATCCTACATACATATATATATATACTTCTTCAATGTCGTTAACTCATTTCTAGATACATTTACTTGCATTCTCAGGTGAAGATGAATTGGAGAACTACAGGAACCGGATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCCGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAG-ATGATCCACCATGGATAAAAAGACAGTTGGATATCCTAGATTCAAGATTTTCTTACGAAAGTTTCT</genome_strand>
        <mrna_strand>AGATACTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGGGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCATACCCTCAAATTCCAACGCCCATCAACGATAACACAACACCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCGTTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAA.......................................................................................AGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATCAGATGAGATACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCAACCCCAGAATTTCAGAAGAAAGAATCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGATGAATTGGAGAATTACAGGAACCGTATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCTGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAGAATGATCCACCGTGGATAAAAAGACAGTTGGATATCCTAGATTCAAGATTTTCTAAGAACAATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249196" ref_strand="+" ref_description="SGN-E249196 [cLEF-50-C18]">
      <seq>aaaaacacccgccgaaaaaaataagctgccacatttccatggcagcagccgcctggtcctccgccgtattcaaacgggcagcttcaaccgccgcccaaattatccgacaccagcacttctcctcagcggcggcggcagcggagattcaccggccgggcgatttctactgtgacggtagtgaaggcgaagaaagtgcagtgtatcagcacaccctcaaatttcaacgcccatcaacgataaaacaacttcagcttctccataactccgtcagtctcataggaaaaattgattatccattcaaaagagttaacactaaaaacggctcttttggggttcatactttactcagtgtctccggttcttctcaatcccgtccatcttttaaagttatgttgaagatgtgggatgaaatggcggaagtgtcaatggagcatttgaaatcaaatgacctggtatatgtttggggtcatttgggatcatacatcaagactgatgagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="10756" stop="11942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11056" g_stop="11440" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11441" i_stop="11527" i_length="87">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="11642" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="500" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E249196" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11056" e_stop="11440"/>
          <exon e_start="11528" e_stop="11642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAAGTGAGACTCTAATTTTACTACTATTTGCAAATTAATTACTATAACTATTAGTCGAGTGATCGTCTGAGAAATTTTAACACTCTGCAGAGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAAT</genome_strand>
        <mrna_strand>AAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGGTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTATCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGGTAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTATCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAA.......................................................................................AGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365677" ref_strand="+" ref_description="SGN-E365677 [cLPT-8-G3]">
      <seq>gagggaaaaaacagttcgaagtctccaaacatggcggtgacggactttttcgccggcgagattaccaccgaactcataaaatacctgctgttgatagttaaaaaatccactttatgccgttcaagcgcagagaatctcattgacaatatcaatggtcttcttccaatcatccaagaaatcaaacaaaccggtgttgaacttccacagatacggcaaactcagctcgacgatttctccaagcttctccgagatggctacgaactcgccggaaaagttctccactccggccgttggaatatgtacaggaacctacagttggctaggaaaatggagaggttagagaaaagagtagcgaggttcatgcaagttacaatgcaagctcatgtactagctgatgttcatcatgttaggtttaatatggagcagagatttgatgtgcttgagcataggcttaaagctataaaaatcggagttgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="19515" stop="20698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19808" g_stop="20112" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113">
            <donor d_prob="0.219" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20226" g_stop="20398" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="478" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E365677" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19808" e_stop="20112"/>
          <exon e_start="20226" e_stop="20398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGGAAAACAGTTTGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAGGTGTCACCTTCTCATTCGACTCTAATTTCAATGAATTGAACTTCTTCCTGCTCAAATTAGGGTTATTGTTAGAAATTAGTACTTAAATTTTTATTATGCCTTATTAATAACAGGAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATG</genome_strand>
        <mrna_strand>GAGGGAAAAAACAGTTCGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTTCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAGCTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAATATGTACAG.................................................................................................................GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTTACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689833" ref_strand="+" ref_description="SGN-E689833 [LH_Ea01O23]">
      <seq>cattgttcgaagtctccaaacatggcggtgacggactttttctccggcgagattaccaccgaactcataaaatacctgctgttgatagttaaaaaatccactttatgccgttcaagcgcagagaatctcattgacaatatcaatggtctccttccaatcatccaagaaatcaaacaaaccggtgttgaacttccacagttacggcaaactcagctcgacgatttctccaaacttctccgagatggctacgaactcgccggaaaagttctccactccggccgttggaatatgtacaggaacctacagttggctaggaaaatggagaggttagagaaaagagtagcgaggttcatgcaagttacgggtgcaagctcatgtactagctgatgttcatcatgttaggtttaatatggagcagagatttgatgtgcttgagcataggcttaaagctataaaaatcggagttgacgatagaagtggtggaggaggagggtgcttaggggaagctgtgaaaagaatggaagaagatgagaaatggttcgaggatagttttgtaaatttaggtgctgggattgaattggggaagaggaaggtgaaggagatgctgatgggtgaacaagataggggtgtgtttgagatttgtggaattgggggtagtggcaaaactaccttggctaaagagatttgtaaagatgatcaagttaaaagttatttcaaggacaaaatttttctttttcactgtctctcaatctccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="19521" stop="21413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19817" g_stop="20112" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113">
            <donor d_prob="0.219" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20226" g_stop="20635" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="707" r_length="411" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20636" i_stop="21064" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21065" g_stop="21113" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="757" r_length="50" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E689833" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19817" e_stop="20112"/>
          <exon e_start="20226" e_stop="20635"/>
          <exon e_start="21065" e_stop="21113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTTGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAGGTGTCACCTTCTCATTCGACTCTAATTTCAATGAATTGAACTTCTTCCTGCTCAAATTAGGGTTATTGTTAGAAATTAGTACTTAAATTTTTATTATGCCTTATTAATAACAGGAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGAC-AATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAAGTAAGTAATTAATCCCAGAAAAGTTTCTCATGTAGAGTATTTTAGCTTTTTGCGGGGTTGAATTCTCAAATGGTTACTCAACTTATAGTTATTATCTCAGAAAATCTCTTTTCGTTCTTGATTCTGATGCAAAGAAAGTCACTTTGTTAGATATAAACTATTAGTTGAGTGACCATCTGTGAAATCAACTCCTGTGTTGCGTTGCTGATGATCGAGTTTTTTGTTTTTACTCTTCTGTTGCGGATGAAACAGTGGATAAAAGTTGAAAACTTTATTAGCTATTATCTCTATTTTATCAGTTGAATTCTAATAGAGATCAATTTTGCATGTAAATGACTCATAAAAAGTTTTGATTGGAGTACAGTTTAAATTGGTCTTAAAAACCTTTTCTTTAAATAATGGTATGGTATTTGGGCCATGTTTTTCCAGGTTATTTCAAGGACAAGA-TTTTCTTTTTCACTGTCTCTCAATCTCCAAA</genome_strand>
        <mrna_strand>CATTGTTCGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCTCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGTTACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAATATGTACAG.................................................................................................................GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTTACGGGTGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGACGATAGAAGTGGTGGAGGAGGAGGGTGCTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTCGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCAAGGACAAAATTTTTCTTTTTCACTGTCTCTCAATCTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365386" ref_strand="+" ref_description="SGN-E365386 [cLPT-2-P22]">
      <seq>ttcgaagtctccaaacatggcggtgacggactttttcgccggcgagattaccaccgaactcataaaatacctgctgttgatagttaaaaaatccactttatgccgttcaagcgcagagaatctcattgacaatatcaatggtcttcttccaatcatccaagaaatcaaacaaaccggtgttgaacttccacagatacggcaaactcagctcgacgatttctccaagcttctccgagatggctacgaactcgccggaaaagttctccactccggccgttggaatatgtacaggaacctacagttggctaggaaaatggagaggttagagaaaagagtagcgaggttcatgcaagttacaatgcaagctcatgtactagctgatgttcatcatgttaggtttaatatggagcagagatttgatgtgcttgagcataggcttaaagctataaaaatcggagttgacgatagaagtggtggaggaggagggtgtttatgggaagctgtgaaaagaatggaaaaagatgagaaatgggttgaggatagttttgtaaatctaggtgctgggattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="19521" stop="20805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19822" g_stop="20112" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113">
            <donor d_prob="0.219" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20226" g_stop="20505" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="571" r_length="280" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E365386" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19822" e_stop="20112"/>
          <exon e_start="20226" e_stop="20505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAGGTGTCACCTTCTCATTCGACTCTAATTTCAATGAATTGAACTTCTTCCTGCTCAAATTAGGGTTATTGTTAGAAATTAGTACTTAAATTTTTATTATGCCTTATTAATAACAGGAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAA</genome_strand>
        <mrna_strand>TTCGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTTCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAGCTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAATATGTACAG.................................................................................................................GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTTACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGACGATAGAAGTGGTGGAGGAGGAGGGTGTTTATGGGAAGCTGTGAAAAGAATGGAAAAAGATGAGAAATGGGTTGAGGATAGTTTTGTAAATCTAGGTGCTGGGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540378" ref_strand="+" ref_description="SGN-E540378 [TUS-60-J23]">
      <seq>ctccaaacatggcggtgacggactttttcgccggcgagattaccaccgaactcataaaatacctgctgttgatagttaaaaaatccactttatgccgttcaagcgcagagaatctcattgacaatatcaatggtctccttccaatcatccaagaaatcaaacaaaccggtgttgaacttccacagatacggcaaactcagctcgacgatttctccaaacttctccgagatggctacgaactcgccggaaaagttctccactccggccgttggaacatgtacaggaacctacagttggctaggaaaatggagaggttagagaaaagagtagcgaggttcatgcaagtgacaatgcaagctcatgtactagctgatgttcatcatgttaggtttaatatggagcagagatttgatgtgcttgagcataggcttaaagctataaaaatcggagttgatgatagaagtggtggaggaaagaagggtgtttangggaagctgtgaaaagaatggaagaagatgagaaatggtttgaggatagttttgtaaatttaggtgctgggattgaattggggaagaggaaggtgaaggagatgctgatgggtgaacaagatangggtgtgtttgagatttgtggaattgggggtagtggcaaaactaccttggctaaagagatttgtaaagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="19530" stop="20925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19830" g_stop="20112" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113">
            <donor d_prob="0.219" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20226" g_stop="20625" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="685" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E540378" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19830" e_stop="20112"/>
          <exon e_start="20226" e_stop="20625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAGGTGTCACCTTCTCATTCGACTCTAATTTCAATGAATTGAACTTCTTCCTGCTCAAATTAGGGTTATTGTTAGAAATTAGTACTTAAATTTTTATTATGCCTTATTAATAACAGGAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGG--AGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGAT</genome_strand>
        <mrna_strand>CTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAG.................................................................................................................GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAAAGAAGGGTGTTTANGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATANGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287363" ref_strand="+" ref_description="SGN-E287363 [cLES-15-O11]">
      <seq>tccaaacatggcggtgacggactttttcgccggcgagattaccaccgaactcataaaatacctgctgttgatagttaaaaaatccactttatgccgttcaagcgcagagaatctcattgacaatatcaatggtctccttccaatcatccaagaaatcaaacaaaccggtgttgaacttccacagatacggcaaactcagctcgacgatttctccaaacttctccgagatggctacgaactcgccggaaaagttctccactccggccgttggaacatgtacaggaacctacagttggctaggaaaatggagaggttagagaaaagagtagcgaggttcatgcaagtgacaatgcaagctcatgtactagctgatgttcatcatgttaggtttaatatggagcagagatttgatgtgcttgagcataggcttaaagctataaaaatcggagttgatgatagaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="19531" stop="20709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19831" g_stop="20112" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113">
            <donor d_prob="0.219" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20226" g_stop="20409" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="466" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E287363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19831" e_stop="20112"/>
          <exon e_start="20226" e_stop="20409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAGGTGTCACCTTCTCATTCGACTCTAATTTCAATGAATTGAACTTCTTCCTGCTCAAATTAGGGTTATTGTTAGAAATTAGTACTTAAATTTTTATTATGCCTTATTAATAACAGGAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGT</genome_strand>
        <mrna_strand>TCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAG.................................................................................................................GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248538" ref_strand="+" ref_description="SGN-E248538 [cLEF-59-D22]">
      <seq>tttgatgtgcttgagcataggcttaaagctataaaaatcggagttgatgatagaagtggtggaggaggagggtgtttaggggaagctgtgaaaagaatggaagaagatgagaaatggtttgaggatagttttgtaaatttaggtgctgggattgaattggggaagaggaaggtgaaggagatgctgatgggtgaacaagataggggtgtgtttgagatttgtggaattgggggtagtggcaaaactaccttggctaaagagatttgtaaagatgatcaagttaaaagttatttcaaggacaagattttctttttcactgtctctcaatctccaaatgtggagcaattaaggaaaatgatttgggaaaagatatcagggtgtaatctccatggttatggatacggggagatgtttccccagtggaacctacagtaccaatggaatacgaaatctgcatccccggtactcttgattcttgatgatgtgtggtctgcatctgttctagaaccactagttttcaagatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="20050" stop="21605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20350" g_stop="20635" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20636" i_stop="21064" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21065" g_stop="21305" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="527" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E248538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20350" e_stop="20635"/>
          <exon e_start="21065" e_stop="21305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAAGTAAGTAATTAATCCCAGAAAAGTTTCTCATGTAGAGTATTTTAGCTTTTTGCGGGGTTGAATTCTCAAATGGTTACTCAACTTATAGTTATTATCTCAGAAAATCTCTTTTCGTTCTTGATTCTGATGCAAAGAAAGTCACTTTGTTAGATATAAACTATTAGTTGAGTGACCATCTGTGAAATCAACTCCTGTGTTGCGTTGCTGATGATCGAGTTTTTTGTTTTTACTCTTCTGTTGCGGATGAAACAGTGGATAAAAGTTGAAAACTTTATTAGCTATTATCTCTATTTTATCAGTTGAATTCTAATAGAGATCAATTTTGCATGTAAATGACTCATAAAAAGTTTTGATTGGAGTACAGTTTAAATTGGTCTTAAAAACCTTTTCTTTAAATAATGGTATGGTATTTGGGCCATGTTTTTCCAGGTTATTTCAAGGACAAGATTTTCTTTTTCACTGTCTCTCAATCTCCAAATGTGGAGCAATTAAGGAAAATGATTTGGGAAAAGATATCAGGGTGTAATCTCCATGGTTATGGATACGGGGAGATGTTTCCCCAGTGGAACCTACAGTACCAATGGAATACGAAATCTGCATCCCCGGTACTCTTGATTCTTGATGATGTGTGGTCTGCATCTGTTCTAGAGCCACTAGTTTTCAAGATCCC</genome_strand>
        <mrna_strand>TTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCAAGGACAAGATTTTCTTTTTCACTGTCTCTCAATCTCCAAATGTGGAGCAATTAAGGAAAATGATTTGGGAAAAGATATCAGGGTGTAATCTCCATGGTTATGGATACGGGGAGATGTTTCCCCAGTGGAACCTACAGTACCAATGGAATACGAAATCTGCATCCCCGGTACTCTTGATTCTTGATGATGTGTGGTCTGCATCTGTTCTAGAACCACTAGTTTTCAAGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699279" ref_strand="+" ref_description="SGN-E699279 [FA09BH01]">
      <seq>ccgtttagattttgccattttgcttttggacacaattcctttccgcgtggtttcagccaaaagcttgtcaaagagattgtggatgaatgtgaagggcttcctttggctcttaaggtcattggatcttcattgaagggaaaacctgagatgttatggacaagtgcaaaaaacagattatcacggtgccaacctgtctgcgagtctcatgaactgcagttgcttgagcgaatgaaattgagtattgactgtttgcctgagaaggtgcgagagtgtttcctggacttgggtgctttcccagaagacaaaaggattcctctcgatgttctaattaacatgtgggtggagctacatgatattgatgaggaggaggcttttcacattcttgttgaactttcagacaaaaatctcctaaatctagtcaaagatgcacgagccggagacatgtatacaagttactatgagatatcggtgtttcagcatgatgtattacgagacctagcaattcatatgagcaaccgtgatgatataaataagagaaagcgattggttatgccgcgaagagacacaagcttcccaagagaatgggaaagaaatgtggacgaacctttccatgcacgagttatctctatgcatacagatgaaatgagagaaatggactggttcagaatggattgcccgaaaattgaagtactgattctcaactttgcctcatctgaatacttcttgcctccttttctggaaaacatgccaaagctaagggcattgataatcataaactatagtgctggcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="21108" stop="22789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21400" g_stop="21474" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21475" i_stop="21572" i_length="98">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21573" g_stop="21928" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="431" r_length="356" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22042" g_stop="22247" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="637" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22333" g_stop="22489" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="794" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E699279" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21400" e_stop="21474"/>
          <exon e_start="21573" e_stop="21928"/>
          <exon e_start="22042" e_stop="22247"/>
          <exon e_start="22333" e_stop="22489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCTTATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAGGTATTAGTGTGTGTTTTTGGCAGCATGTTAATTTTTCTTTGCAAAAAACTTCTTGTTATACTTGAGTTAAGCTAACTAAAGCTTCTTGGACTTTTTAGATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAATAGATTATCACGATGCCAACCTGTCTGTGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACGGTAAGTGGTGGATTCAAATCTCTTCAAACGATCTTTTAATTTTTGTTAGAAGGTGATTGTTTATGGAAAAAATCAATATGTTGATAGTCTTCAATGTGTTGTTCATGTGGCAGAGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAGGTATTAGATCCTTGATTAATGCTGATTGCTTAGTAATGAAAAGTTTATCTTGTGATATAAACATAAATATTTCTCTGTAATGTAGATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGC</genome_strand>
        <mrna_strand>CCGTTTAGATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAG..................................................................................................ATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAACAGATTATCACGGTGCCAACCTGTCTGCGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG.................................................................................................................AGCCGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTTATCTCTATGCATACAG.....................................................................................ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAATTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTGCCTCCTTTTCTGGAAAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373104" ref_strand="+" ref_description="SGN-E373104 [TUS-32-K21]">
      <seq>gatattgatgaggaggaggcttttcacattcttgttgaactttcagacaaaaatctcctaaatctagtcaaagatgcacgagctggagacatgtatacaagttactatgagatatcggtgtttcagcatgatgtattacgagacctagcaattcatatgagcaaccgtgatgatataaataagagaaagcgattggttatgccgcgaagagacacaagcttcccaagagaatgggaaagaaatgtggacgaacctttccatgcacgagtcatctctgtgcatacagatgaaatgagagaaatggactggttcagaatggattgcccgaaagttgaagtactgattctcaactttgcctcatctgaatacttcttacctccttttctggagaacatgccaaagctaagggcattgataatcataaactatagtgctggcaatgccgttcttcataacatgtctgtattcagtcatttaaccaacttgagaagcctttggttcgagaagatatccatcactcacttatctgactccacaaatcctctcaataacctgcgaaagatatctctagtgctttgtgacatgaaaaacagcttagatgagtcagatgtagacctccctggtttgttcccacagctctcggagttcacaatggatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="21549" stop="23006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21849" g_stop="21928" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22042" g_stop="22247" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="286" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22333" g_stop="22706" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="660" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E373104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21849" e_stop="21928"/>
          <exon e_start="22042" e_stop="22247"/>
          <exon e_start="22333" e_stop="22706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACGGTAAGTGGTGGATTCAAATCTCTTCAAACGATCTTTTAATTTTTGTTAGAAGGTGATTGTTTATGGAAAAAATCAATATGTTGATAGTCTTCAATGTGTTGTTCATGTGGCAGAGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAGGTATTAGATCCTTGATTAATGCTGATTGCTTAGTAATGAAAAGTTTATCTTGTGATATAAACATAAATATTTCTCTGTAATGTAGATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCAC</genome_strand>
        <mrna_strand>GATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG.................................................................................................................AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG.....................................................................................ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294095" ref_strand="+" ref_description="SGN-E294095 [cLET-13-I10]">
      <seq>gatattgatgaggaggaggcttttcacattcttgttgaactttcagacaaaaatctcctaaatctagtcaaagatgcacgagctggagacatgtatacaagttactatgagatatcggtgtttcagcatgatgtattacgagacctagcaattcatatgagcaaccgtgatgatataaataagagaaagcgattggttatgccgcgaagagacacaagcttcccaagagaatgggaaagaaatgtggacgaacctttccatgcacgagtcatctctgtgcatacagatgaaatgagagaaatggactggttcagaatggattgcccgaaagttgaagtactgattctcaactttgcctcatctgaatacttcttacctccttttctggagaacatgccaaagctaagggcattgataatcataaactatagtgctggcaatgccgttcttcataacatgtctgtattcagtcatttaaccaacttgagaagcctttggttcgagaagatatccatcactcacttatctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="21549" stop="22878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21849" g_stop="21928" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22042" g_stop="22247" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="286" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22333" g_stop="22578" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="532" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E294095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21849" e_stop="21928"/>
          <exon e_start="22042" e_stop="22247"/>
          <exon e_start="22333" e_stop="22578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACGGTAAGTGGTGGATTCAAATCTCTTCAAACGATCTTTTAATTTTTGTTAGAAGGTGATTGTTTATGGAAAAAATCAATATGTTGATAGTCTTCAATGTGTTGTTCATGTGGCAGAGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAGGTATTAGATCCTTGATTAATGCTGATTGCTTAGTAATGAAAAGTTTATCTTGTGATATAAACATAAATATTTCTCTGTAATGTAGATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACT</genome_strand>
        <mrna_strand>GATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG.................................................................................................................AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG.....................................................................................ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282323" ref_strand="+" ref_description="SGN-E282323 [cLER-18-G23]">
      <seq>gatgaggaggaggcttttcacattcttgttgaactttcagacaaaaatctcctaaatctagtcaaagatgcacgagctggagacatgtatacaagttactatgagatatcggtgtttcagcatgatgtattacgagacctagcaattcatatgagcaaccgtgatgatataaataagagaaagcgattggttatgccgcgaagagacacaagcttcccaagagaatgggaaagaaatgtggacgaacctttccatgcacgagtcatctctgtgcatacagatgaaatgagagaaatggactggttcagaatggattgcccgaaagttgaagtactgattctcaactttgcctcatctgaatacttcttacctccttttctggagaacatgccaaagctaagggcattgataatcataaactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="21555" stop="22776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21855" g_stop="21928" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22042" g_stop="22247" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="280" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22333" g_stop="22476" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="424" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E282323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21855" e_stop="21928"/>
          <exon e_start="22042" e_stop="22247"/>
          <exon e_start="22333" e_stop="22476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACGGTAAGTGGTGGATTCAAATCTCTTCAAACGATCTTTTAATTTTTGTTAGAAGGTGATTGTTTATGGAAAAAATCAATATGTTGATAGTCTTCAATGTGTTGTTCATGTGGCAGAGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAGGTATTAGATCCTTGATTAATGCTGATTGCTTAGTAATGAAAAGTTTATCTTGTGATATAAACATAAATATTTCTCTGTAATGTAGATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATA</genome_strand>
        <mrna_strand>GATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG.................................................................................................................AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG.....................................................................................ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206964" ref_strand="+" ref_description="SGN-E206964 [cLEC-33-E20]">
      <seq>gaatgggaaagaaatgtggacgaacctttccatgcacgagtcatctctgtgcatacagatgaaatgagagaaatggactggttcagaatggattgcccgaaagttgaagtactgattctcaactttgcctcatctgaatacttcttacctccttttctggagaacatgccaaagctaagggcattgataatcataaactatagtgctggcaatgccgttcttcataacatgtctgtattcagtcatttaaccaacttgagaagcctttggttcgagaagatatccatcactcacttatctgactccacaaatcctctcaataacctgcgaaagatatctctagtgctttgtgacatgaaaaacagcttagatgagtcagatgtagacctccctggtttgttcccacagctctcggagttcacaatggatcactgcatcaacttcaacaagctaccatcaagcatttgccggttgcataagctcaacagccttagcatcactaattgtgatagtctttatgaacttccatctgatttaggtgaattacaaactctacaagttctaaggatatatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="21890" stop="23151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22190" g_stop="22247" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22333" g_stop="22851" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="577" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E206964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22190" e_stop="22247"/>
          <exon e_start="22333" e_stop="22851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAGGTATTAGATCCTTGATTAATGCTGATTGCTTAGTAATGAAAAGTTTATCTTGTGATATAAACATAAATATTTCTCTGTAATGTAGATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCT</genome_strand>
        <mrna_strand>GAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG.....................................................................................ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540375" ref_strand="+" ref_description="SGN-E540375 [TUS-60-J23](-)">
      <seq>caataacctgcgaaagatatctctagtgctttgtgacatgaaaaacagcttagatgagtcagatgtagacctccctggtttgttcccacagctctcggagttcacaatggatcactgcatcaacttcaacaagctaccatcaagcatttgccggttgcataagctcaacagccttagcatcactaattgtgatagtctttatgaacttccatctgatttaggtgaattacaaactctacaagttctaaggatatatgcctgcccacatctgaaaaggcttcccccgggaattggtcatttggtaaagctgaagtaccttgacatttcacaatgtgttggtttgagatgtctccctgaagcaattggttgctgtagaaacttagagaagatcgatatgagggagtgccctcaaatcgacagtttgcctagcgctctatcctttcttgaatcattacgctgtgttatctgtgacgatgaaattttttgtcaatggaaagacgttgagaaggctgtaccaggtctctgtgtacaggttgccgaggagtgccatactcttgactggctatctcagtaatcaaagttttcaattccctcgcgttgggcttcttttgtgtaaatatagcaaggctcagttaattttccagttctgtattttcccctttacatggggttccttatatctcttgtaaataatatatatagctacatgtaaatatatagatggattacatctcaatagctaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="22292" stop="93208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22592" g_stop="23333" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23334" i_stop="24115" i_length="782">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24116" g_stop="24141" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="768" r_length="26" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E540375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22592" e_stop="23333"/>
          <exon e_start="24116" e_stop="24141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCTGCCCACATCTGAAAAGGCTTCCCCCGGGAATTGGTCATTTGGTAAAGCTGAAGTACCTTGACATTTCACAATGTGTTGGTTTGAGATGTCTCCCTGAAGCAATTGGTTGCTGTAGAAACTTAGAGAAGATCGATATGAGGGAGTGCCCTCAAATCGACAGTTTGCCTAGCGCTCTATCCTTTCTTGAATCATTACGCTGTGTTATCTGTGACGATGAAATTTTTTGTCAATGGAAAGACGTTGAGAAGGCTGTACCAGGTCTCTGTGTACAGGTTGCCGAGGAGTGCCATACTCTTGACTGGCTATCTCAGTAATCAAAGTTTTCAATTCCCTCGCGTTGGGCTTCTTTTGTGTAAATATAGCAAGGCTCAGTTAATTTTCCAGTTCTGTATTTTCCCCTTTACATGGGGTTCCTTATATCTCTTGTAAATAATATATATAGCTACATGTAAATATATAGATGGATTACATCTCAATAGCTAATCTTTCCTTTTACTTTACCATAATGCTGGAAGCAAAATTACAAAAGGTAATCCAAGACTAAGGCGAGTTATCTGCTATAACTCGAGCAACATTTAAATTCTGAAGCCATCGTAAAAAATTCAATGATAAGAGGTGTGATTCAAAATTCATAAACTTAAGTCAGTTTTTTGTCATCGTGAAGCAGAAAACGATAGTTGAAGTAAACGTGTGGACCCTGCTAAGTGCTAATAAGTAATCATGATCACTGAAATTATGTAAGTAAAGACACTATTTAATGAGATTCATGGAACAAAAAGATTTAGTAAATTAAATGTGGGGACCTTTTGCTAGTTTTTTCTTCTTGAGATGATTGGGAAAGAAGTGAGGTTTGTTCAATGAATTTGATAAATTTTCCACCAAAATTTGGTAGTGTTCACATCCAGCATATTGCTTTCAAAGAATTTTTGACCCATAAACATAGAGCACAAATGTCATTTTAGTTAACCACTCTTATATGACTTCATTTTCATAAGGCAAGTTGGCAAAGGAACCATATTCTCATTAGATTTAACTCGATCTCCACAGACATCTCGAGATATCCTTAAAAAAGTTTTATAATAGCAAGCGAAGGAATTGAATGAAGTTGTAGCTAAGACCATTCTAATGCCTAACAACAACAAACAGTATAATCCCATAGGTGGAGTCTACCTATCTACATATCCAAGAGCCATTCTAGTCAACGTCTCGCTATAATTATGTAGTACAATTATACCGACATAAATCCACAGCATAAACGTTCGTTAATAACATGAGAAATATAAATGAAAA</genome_strand>
        <mrna_strand>CAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCTGCCCACATCTGAAAAGGCTTCCCCCGGGAATTGGTCATTTGGTAAAGCTGAAGTACCTTGACATTTCACAATGTGTTGGTTTGAGATGTCTCCCTGAAGCAATTGGTTGCTGTAGAAACTTAGAGAAGATCGATATGAGGGAGTGCCCTCAAATCGACAGTTTGCCTAGCGCTCTATCCTTTCTTGAATCATTACGCTGTGTTATCTGTGACGATGAAATTTTTTGTCAATGGAAAGACGTTGAGAAGGCTGTACCAGGTCTCTGTGTACAGGTTGCCGAGGAGTGCCATACTCTTGACTGGCTATCTCAGTAATCAAAGTTTTCAATTCCCTCGCGTTGGGCTTCTTTTGTGTAAATATAGCAAGGCTCAGTTAATTTTCCAGTTCTGTATTTTCCCCTTTACATGGGGTTCCTTATATCTCTTGTAAATAATATATATAGCTACATGTAAATATATAGATGGATTACATCTCAATAGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373103" ref_strand="+" ref_description="SGN-E373103 [TUS-32-K21](-)">
      <seq>agtcagatgtagacctccctggtttgttcccacagctctcggagttcacaatggatcactgcatcaacttcaacaagctaccatcaagcatttgccggttgcataagctcaacagccttagcatcactaattgtgatagtctttatgaacttccatctgatttaggtgaattacaaactctacaagttctaaggatatatgcctgcccacatctgaaaaggcttcccccgggaattggtcatttggtaaagctgaagtaccttgacatttcacaatgtgttggtttgagatgtctccctgaagcaattggttgctgtagaaacttagagaagatcgatatgagggagtgccctcaaatcgacagtttgcctagcgctctatcctttcttgaatcattacgctgtgttatctgtgacgatgaaattttttgtcaatggaaagacgttgagaaggctgtaccaggtctctgtgtacaggttgccgaggagtgccatactcttgactggctatctcagtaatcaaagttttcaattccctcgcgttgggcttcttttgtgtaaatatagcaaggctcagttaattttccagttctgtattttcccctttacatggggttccttatatctcttgtaaataatatatatagctacatgtaaatatatagatggattacatctcaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="22348" stop="23629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22648" g_stop="23337" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E373103" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22648" e_stop="23337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCTGCCCACATCTGAAAAGGCTTCCCCCGGGAATTGGTCATTTGGTAAAGCTGAAGTACCTTGACATTTCACAATGTGTTGGTTTGAGATGTCTCCCTGAAGCAATTGGTTGCTGTAGAAACTTAGAGAAGATCGATATGAGGGAGTGCCCTCAAATCGACAGTTTGCCTAGCGCTCTATCCTTTCTTGAATCATTACGCTGTGTTATCTGTGACGATGAAATTTTTTGTCAATGGAAAGACGTTGAGAAGGCTGTACCAGGTCTCTGTGTACAGGTTGCCGAGGAGTGCCATACTCTTGACTGGCTATCTCAGTAATCAAAGTTTTCAATTCCCTCGCGTTGGGCTTCTTTTGTGTAAATATAGCAAGGCTCAGTTAATTTTCCAGTTCTGTATTTTCCCCTTTACATGGGGTTCCTTATATCTCTTGTAAATAATATATATAGCTACATGTAAATATATAGATGGATTACATCTCAATAGCTAATCT</genome_strand>
        <mrna_strand>AGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCTGCCCACATCTGAAAAGGCTTCCCCCGGGAATTGGTCATTTGGTAAAGCTGAAGTACCTTGACATTTCACAATGTGTTGGTTTGAGATGTCTCCCTGAAGCAATTGGTTGCTGTAGAAACTTAGAGAAGATCGATATGAGGGAGTGCCCTCAAATCGACAGTTTGCCTAGCGCTCTATCCTTTCTTGAATCATTACGCTGTGTTATCTGTGACGATGAAATTTTTTGTCAATGGAAAGACGTTGAGAAGGCTGTACCAGGTCTCTGTGTACAGGTTGCCGAGGAGTGCCATACTCTTGACTGGCTATCTCAGTAATCAAAGTTTTCAATTCCCTCGCGTTGGGCTTCTTTTGTGTAAATATAGCAAGGCTCAGTTAATTTTCCAGTTCTGTATTTTCCCCTTTACATGGGGTTCCTTATATCTCTTGTAAATAATATATATAGCTACATGTAAATATATAGATGGATTACATCTCAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746131" ref_strand="+" ref_description="SGN-E746131 [GI|47104923]">
      <seq>aaaaataaaaagataaaaaaatggggtgtctataatttgcatgtttcagtacttattaatctcaaaatctgatcttgagtatttaaattccatttacttactattgtaattaatgctagtcatttcaagaaaaggggaaaaagactcaatttttaagctcaggtttcatgtcggtgctgattcttgaaaactaagtttaaagattcaacctttagacctattttgtagattttttttttttgagagaaaattatgggggagacacataatcatgaacacaaccaccagccaccgccgcaacaggcggcggcgccaccagcaatgccacttggttcagcaaggggacctatgtttcctccggcagagcaactacttcagcttcgctactgcatacactcaaatccttcttggccacaaactgttttgttggcttttcaacactacatagttatgcttggaacaacagtaatgattgccaccgtgctggtacctcagatgggtgggggtccgggtgacaaagctcaagttatccagtctttgcttttcacttcaggagtgaatactcttctgcaaacgccttttggcacaagacttcccactgtgatgggtccgtcatttgcttacatcatatcagctctgtcagtcattaacgatctctcggacagtaatttcaggagtgagcatgagagattcaagcacactatgagagctattcaagggtcactgatagtgtcttcctttatcaacataatacttggatatggccaagcgtggggaaatcttacaaggtttttcagtcctgtagtcattacgccacttgtctgtgttgtaggtcttggtttgtttggtaggggttttcctcaggtgggtgattgtatagagattggccttcccatgttaattctacttgtcatttctcagcagtatatgcaacgtgttcatccagttgcccaatccatacttgaaaggtttgctttgctcctctgcattgggtttatctgggcttttgctgctattcttactgttgccggtgcttacaaccatgtgaaggagcaaactaagatgaactgccgaattgaccattcgttcctcttgtcatcggctccatggatcaaagttccttaccctttcctgtgggggactcctatattcagagctagcaatgtctttggaatgatgggtgcagcacttgtatcagcagcagagtcaacagcaactttttatgctgcatcaaggcttgcaggtgcgaccacccctccggcccatgttgtgagtagaagcattggcttacagggtataggacagctctttgacgggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatcttcttctccatatttggaaaattcggagcattctttgctcaaattcctttgcccatatttgcagctatctactgcatcttatacggtatagtagctgctattggtatttccttcatccaatttgcgaacaaaaactccatgcggaatatatacgtgctcggtgtctctctattcctcggtatatctatacctcaatactttgtgatgaacacagatatagctggtcatggacctgttagaactccagctggatggttcaatgacttattgaacacaatattctcttcacctcctactgttgcaacgattgtcgggacagtagtagacaacacactcgaagcaagacactcatatgacgatagaggtattccgtggttggttcctttccagaggaggaaaggagatagcagaaatgaggagttctatagttaccctcttagaattaatgagtacatcccaagtagatttctgtgataacttatacatccatgtatatgactgtatcaaagctgtatgacaaaatttctttttagctctccactttagtccattgtttgtttgtttttccatttcaattcttgtcacatgaaatttttgaacatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="31580" stop="23887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31281" g_stop="30870" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30869" i_stop="28775" i_length="2095">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28774" g_stop="28677" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="510" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28676" i_stop="28591" i_length="86">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28590" g_stop="28414" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="687" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28413" i_stop="26916" i_length="1498">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26915" g_stop="26815" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="788" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26814" i_stop="26657" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26656" g_stop="26581" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="864" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26580" i_stop="26489" i_length="92">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26488" g_stop="26429" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="924" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26428" i_stop="26347" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26346" g_stop="26162" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1109" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26161" i_stop="26085" i_length="77">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26084" g_stop="25988" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1206" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1207" r_stop="1293" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1294" r_stop="1352" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25224" g_stop="25133" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1353" r_stop="1444" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25022" g_stop="24945" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1445" r_stop="1522" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="24861" g_stop="24701" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1523" r_stop="1683" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="24539" g_stop="24195" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1684" r_stop="2028" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2033" polyA_stop="2047"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E746131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2028</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31281" e_stop="30870"/>
          <exon e_start="28774" e_stop="28677"/>
          <exon e_start="28590" e_stop="28414"/>
          <exon e_start="26915" e_stop="26815"/>
          <exon e_start="26656" e_stop="26581"/>
          <exon e_start="26488" e_stop="26429"/>
          <exon e_start="26346" e_stop="26162"/>
          <exon e_start="26084" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25133"/>
          <exon e_start="25022" e_stop="24945"/>
          <exon e_start="24861" e_stop="24701"/>
          <exon e_start="24539" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATAAAAAGATAAAAAAATGGGGTGTCTATAATTTGCATGTTTCAGTACTTATTAATCTCAAAATCTGATCTTGAGTATTTAAATTCCATTTACTTACTATTGTAATTAATGCTAGTCATTTCAAGAAAAGGGGAAAAAGACTCAATTTTTAAGCTCAGGTTTCATGTCGGTGCTGATTCTTGAAAACTAAGTTTAAAGATTCAACCTTTAGACCTATTTTGTAGATTTTTTTTTTTTGAGAGAAAATTATGGGGGAGACACATAATCATGAACACAACCACCAGCCACCGCCGCAACAGGCGGCGGCGCCACCAGCAATGCCACTTGGTTCAGCAAGAGGACCTATGTTTCCTCCGGCAGAGCAACTACTTCAGCTTCACTACTGCATACACTCAAATCCTTCTTGGCGTTAGTATTCTTTTTCATTTCTTTAATTTTAGTTACTTATAGTGGAATCTATACATGCCTTACTGAAAAGATAAAGAGGAAAAATTGACACTTTGTTTTGTTAAAGTTTGTGTCTTTTTCATTCTTGGATTGGGGTGAATTTTATAATCTTAAAGTATTGGGATTGAAATTGATGTTTTTTGTTGTAAAGTTTTTGTTTTTAGTTTTTTGGTTGGGGTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAGAGCTAAGTCTCCCTTCCAACGGGGAGAACTGATAACTTGGTGGTTTCCTCAAGCGGGATAGAATGGGTTTGATCAGAATACGCCAATAATGTTGCCAAATTGAGCTAATCCCCGTACCGTGAGCCTATAGTCCTATATTGACATCGCTTCCCAAGCTTCGATCCCGTTACTCAGTTTACTCATTTTTGTCACCAATTGTTAATGTGAGCTATGTATTCAGTGAAGATTCCATTTCATGTGCAATAGTAGAATCAGATAAGCCTGTTGGAAGTTTTCTTCTTTTGCATGGGATGTGACGTTGCATGGTTGGATCTACACTTTCTGCTGCACTTTGGTCGCAAATAATGTGGCGCATTGAGTTCTATACAGACAAACAAATTTAAAGCTATTCAGATGAGCCAAAGATTAGATAGATGAAAGGCCGCTACCTTCCAAAAAGAGGAGAGGATGAGGAGGCACTTTCTGAAACGACGTAGGCCATCTTAATTAGCTTAATTGCTTCTAAGGGTATTGGGATTCAATGATGATGAGGAAAAGGAAGAGTCTCTGCAGATATTATCGACTTAAAATTCATTATAGCTTCTAAATCGTCCAAGACATGTAATGGTCACTTTTTCATGTGAGTCAATTGGTGCTTATGCTTTTTGACTATCGTCAGGTGAAGAAATTGGAATCATAGTAAGCATGGTGATTTAGAAAGCTCCCCGCTCCTCCAATGTTTGGAGTTGAGATTGCTCTGACTGCCGAGTTAAATGCTTTTGTTTCTAGTATCGAGTTGTAACATGTTCTCTTTTTCTCTTGAGGGAGCTGTCTATCATGAGAAGACTTAAATCAAACTGTTTATGGGGAGTTGAGTGGTGTCAAGCTTCTTTCTTAAGATGCAGAATGTATCATGGAAGGCTTTCCATAAATGTGAAATTTGCATTCATACAATATATAATTTTCCAACCAAAAGGAGTTTCAGTCTCTCCATGGAATGACTGAATTCTGATAACGACAAAAGATCCTCTTAACCATTGGTAGATTGCCTCAACATAAACTGTTATTTAGCTAAAGGATAATTCTTGTATTTTACCATCCGAGGAATATACTTTGATAGAACAAAGGTTTCCCTATTGAGCAATAAGATCTGGCTTGTAGTTACCTTGTTTGTGCTGCATATGGCCCACTTGAGCAATCACTTCTCTGATTATTCGCCTTGTTCCTGTAAATTGGAATTTTTACTTTGTTATCACATAAAGAAATAAAAGAATTTCAGAAAATCGTGACCGTAACAATTTCATGATCTAACTTATCCTCCCAAAAAATGATTGTATGATTTGAAGTTTTCACCACCTGTAATGAGTTGCTGATTCTGAAACCTGACTATATTATTGGTCTTTTTCTCTAACTACTTGCATGATTCTAAATTTTGCAGCACAAACTGTTTTGTTGGCTTTTCAACACTACATAGTTATGCTTGGAACAACAGTAATGATTGCCACCGTGCTGGTACCTCAGATGGGTGGGGGTCCGGTATATCTCTGCATTTCCCTTGTTTGTATTGGAGTTACCTTTTCGATGTAATATTGACATTGTGAGCTCTTTATCTTTATGAGCAGGGTGACAAAGCTCAAGTTATCCAGTCTTTGCTTTTCACTTCAGGAGTGAATACTCTTCTGCAAACGCTTTTTGGCACAAGACTTCCCACTGTGATGGGTCCGTCATTTGCTTACATCATATCAGCTCTGTCAGTCATTAACGATCTCTCGGACAGTAATTTCAGGAGTGAGCATGAGGTAACAAAATTTATTGTTTAGGTATTACCTCTATTACTTGTATAATGTATTTTATGGAAACCTGTCATTTTTCTTTTATCGCACCTTTAGTAGGTCCATCCCCCTATTTCAGTGATAAGACACAGTTGAAGAATAATTTGATGTTGTAGTAAACCAAATTTTTTTCAGAATTGATATTATTAGTTTATTCATTTCATGTCTAAATAGGATTTGTAGTCAGAATTATACAGAAGGTTTTTATTATTAGAAATACGGATATTGCTAGTTATTTTCATAATGCAGAGAGTAGTGGAGAATGGAAGAGAACTCAAAGAAATGTATTGACCTTATGAATAAATTATCTTCCGTCAAAGTAGTAGCAGAGCTTCTACGATTTTGACAGAGAATCAAAAACCTTGCACTGTTGATGGAAGGTACTAGCCAATATGTGTTGCCCGTCTGGCCAAGGATTATGTTGGTGAACTCATAGACAATTGTCATGAAAGAGTTAGATTATTTTCCTAAGATCATTGATTACTCTTAAAGCATAAATTCATTTAAATCATACGTCACCTTACCTTAATACTCTAATATTAATTCTTTGATATTGTATGGTGGATTTTGACTTTTGCATTTCAGATTATACTGATAAAAGATCCAATGTAAGTCGGCTAGAATCAAAGATTTAAATAAAAAAAAGTGGATATCTAAAGCAATCTGCTGATAGGCAAAACTTTCATTTCTTTGTATTCCTTGATCTTACTTAGTGGGGAAATCTCATCTGAAAAATATAGTTTTCCACTTTTCCTTTACTTGTGCAAAAGAGAGGTTTATGGAAAGCAGAAGTACAGTATAAGACAAGATATTCTCATATACAAAAGTGCTAATGACATCATAGTCGTATCAATTTAAGTTAAGCAAGCCCTTGTTTGGGGGATAAGCTTAATATTTTACATGACTGAGCTACCAGATGACTACTTTTTGTTGGGTAAGTAGCTTGTTCCGAGATAGGTACTTTGTTTATAGAGGATATTCAAAGACAAGATGTTCTCCCATACAAAGAAAGGCTGATAGTTACTTCACTTGTAATTTGAGCAGAAGCATCATAGTGGAAGACAAGATTATACGCAGAAATGCTGATGAAATTTTAATCTCATTTAAGAGTTAGGATAAGTCAAAGCCACAGTTTGAAGAATCAAAAAAGACATGGCGTCTTAAAAGGCTTTTAATGCATGTTCTTGGAATTACAGAGTGCGTGAATCTTACAGTTGAAGCATGCTACTTCCATGGAACTACCTCTTGTGATGAAACAGAAAAATTAATTTAATCTGCTTCTCACGTTCACCATGTCCATATTGATTAAGCACCCTGGTTTCAGATTCTGGCTTTACTTCCCCTGTGTTTTACCTCAAAGTTTGGGGCTTTGTGTTGTTAATGTGAAGTATGTTGTCAATGCTCATGACAGTGGGTAATTGCAGATGATATTTCTGATGTATTACCCTGATATTGTTGTTTGTAGAGATTCAAGCACACTATGAGAGCTATTCAAGGGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAGGTAAGTTGTGTTTTCTGCTTCTAAATACTTTTAACAAGAACCATTAGTGTTGGTTTTGAACTTCGGAATCGTCTTTCCATTGCCTTCCCATTATGTTTCATCGTTGTATTACTTTTCCTGTTGAAAAAATGACATGTCATCCTCCTACTTCTCTGCAGGTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAGGTATTACCCCAAATGTCTATCTAAAATCTTCATTGCTCAAAGAGTTGCATAAACATCATCCAGTTTTCCTTATGATGCTATAATTTGATCAGGTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAGGTAATATATTATTTCATTGACTGTATTTTCGATTTTCTTTTGCTTTACTGGAAGATTGTAATGTTGGTCAAGTCATCTGCAGTATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATGGTACTCAGCTGGACTAAATAATGACAATGTCTTCAGCTCTCTGTCTTCTTCTGACATGTATGTTTTGCTGCGTGTAGGATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTGGTATTGACATTCTCTCTCCCTCCATTTCTCCGCCACCCTGTCCCTTTCTTTCTTCATCTCAAACTATGTTTTACAACTAGCAGTGACTAATGTAAGTTGTTATTATCTAGGAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAGGTAAGTGATTTCTCCCTTAGCAGCTTGTTAATCTTCGCGTCATCTTATTAACAATAACTAAAGAAGGGATATGTTTTCTGCAGCTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGGGTAAGAACCATTACTCTCACATGATCCCTCGTTTTTTAATTTTGCGATATACATTTAACAGTAGATTTTAGGATAATAAGTTGTACTTGCAATTACCTAATGAATCTTTTACACCATCATTGACAACCTAAAACTTAAAACTTGACCGATGTTTTTTGCAGTTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCTTTTTAGCTCTCCACTTTAGTCCATTGTTTGTTTGTTTTTCCATTTCAATTCTTGTCACATGAAATTTTTGAAC</genome_strand>
        <mrna_strand>AAAAATAAAAAGATAAAAAAATGGGGTGTCTATAATTTGCATGTTTCAGTACTTATTAATCTCAAAATCTGATCTTGAGTATTTAAATTCCATTTACTTACTATTGTAATTAATGCTAGTCATTTCAAGAAAAGGGGAAAAAGACTCAATTTTTAAGCTCAGGTTTCATGTCGGTGCTGATTCTTGAAAACTAAGTTTAAAGATTCAACCTTTAGACCTATTTTGTAGATTTTTTTTTTTTGAGAGAAAATTATGGGGGAGACACATAATCATGAACACAACCACCAGCCACCGCCGCAACAGGCGGCGGCGCCACCAGCAATGCCACTTGGTTCAGCAAGGGGACCTATGTTTCCTCCGGCAGAGCAACTACTTCAGCTTCGCTACTGCATACACTCAAATCCTTCTTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAACTGTTTTGTTGGCTTTTCAACACTACATAGTTATGCTTGGAACAACAGTAATGATTGCCACCGTGCTGGTACCTCAGATGGGTGGGGGTCCG......................................................................................GGTGACAAAGCTCAAGTTATCCAGTCTTTGCTTTTCACTTCAGGAGTGAATACTCTTCTGCAAACGCCTTTTGGCACAAGACTTCCCACTGTGATGGGTCCGTCATTTGCTTACATCATATCAGCTCTGTCAGTCATTAACGATCTCTCGGACAGTAATTTCAGGAGTGAGCATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAAGCACACTATGAGAGCTATTCAAGGGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAG..............................................................................................................................................................GTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAG............................................................................................GTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAG..................................................................................TATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATG.............................................................................GATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCAGCACTTGTATCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG..............................................................................................................GAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG...................................................................................CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG.................................................................................................................................................................TTCAATGACTTATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCTTTTTAGCTCTCCACTTTAGTCCATTGTTTGTTTGTTTTTCCATTTCAATTCTTGTCACATGAAATTTTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260879" ref_strand="+" ref_description="SGN-E260879 [cLEG-55-E22]">
      <seq>cagagctagcaatgtctttggaatgatgggtgctgcatttgtatcagcagcagagtcaacagcaactttttatgctgcatcaaggcttgcaggtgcgaccacccctccggcccatgttgtgagtagaagcattggcttacagggtataggacagctctttgacgggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatcttcttctccatatttggaaaattcggagcattctttgctcaaattcctttgcccatatttgcagctatctactgcatcttatacggtatagtagctgctattggtatttccttcatccaatttgcgaacaaaaactccatgcggaatatatacgtgctcggtgtctctctattcctcggtatatctatacctcaatactttgtgatgaacacagatatagctggtcatggacctgttagaactccagctggatggttcaatgacatattgaacacaatattctcttcacctcctactgttgcaacgattgtcgggacagtagtagacaacacactcgaagcaagacactcatatgacgatagaggtattccgtggttggttcctttccagaagangaaaggagatagcagaaatgaggagttctatagttaccctcttagaattaatgagtacatcccaagtagatttctgtgataacttatacatccatgtatatgactgtatcaaagctgtatgacaaaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="26342" stop="23968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26042" g_stop="25988" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="142" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="201" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25224" g_stop="25133" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="293" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25022" g_stop="24945" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="371" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24861" g_stop="24701" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="532" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24539" g_stop="24268" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="804" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E260879" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26042" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25133"/>
          <exon e_start="25022" e_stop="24945"/>
          <exon e_start="24861" e_stop="24701"/>
          <exon e_start="24539" e_stop="24268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTGGTATTGACATTCTCTCTCCCTCCATTTCTCCGCCACCCTGTCCCTTTCTTTCTTCATCTCAAACTATGTTTTACAACTAGCAGTGACTAATGTAAGTTGTTATTATCTAGGAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAGGTAAGTGATTTCTCCCTTAGCAGCTTGTTAATCTTCGCGTCATCTTATTAACAATAACTAAAGAAGGGATATGTTTTCTGCAGCTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGGGTAAGAACCATTACTCTCACATGATCCCTCGTTTTTTAATTTTGCGATATACATTTAACAGTAGATTTTAGGATAATAAGTTGTACTTGCAATTACCTAATGAATCTTTTACACCATCATTGACAACCTAAAACTTAAAACTTGACCGATGTTTTTTGCAGTTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCT</genome_strand>
        <mrna_strand>CAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCATTTGTATCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG..............................................................................................................GAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG...................................................................................CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG.................................................................................................................................................................TTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAAGANGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713879" ref_strand="+" ref_description="SGN-E713879 [FB09DF10]">
      <seq>agtaaactaagatgaactgccgaattgaccattcgttcctcttgtcatcggctccatggatcaaagttccttaccctttcctgtgggggactcctatattcagagctagcaatgtctttggaatgatgggtgctgcacttgtatcagcagcagagtcaacagcaactttttatgctgcatcaaggcttgcaggtgcgaccacccctccggcccatgttgtgagtagaagcattggcttacagggtataggacagctctttgacgggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatcttcttctccatatttggaaaattcggagcattctttgctcaaattcctttgcccatatttgcagctatctactgcatcttatacggtatagtagctgctattggtatttccttcatccaatttgcgaacaaaaactccatgcggaatatatacgtgctcggtgtctctctattcctcggtatatctatacctcaatactttgtgatgaacacagatatagctggtcatggacctgttagaactccagctggatggttcaatgacatattgaacacaatattctcttcacctcctactgttgcaacgattgtcgggacagtagtagacaacacactcgaagcaagacactcgtatgacgatagaggtattccgtggttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="26519" stop="24114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26219" g_stop="26162" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26161" i_stop="26085" i_length="77">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26084" g_stop="25988" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="155" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="242" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="301" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25224" g_stop="25133" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="393" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25022" g_stop="24945" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="471" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24861" g_stop="24701" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="632" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24539" g_stop="24414" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="758" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E713879" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26219" e_stop="26162"/>
          <exon e_start="26084" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25133"/>
          <exon e_start="25022" e_stop="24945"/>
          <exon e_start="24861" e_stop="24701"/>
          <exon e_start="24539" e_stop="24414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATGGTACTCAGCTGGACTAAATAATGACAATGTCTTCAGCTCTCTGTCTTCTTCTGACATGTATGTTTTGCTGCGTGTAGGATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTGGTATTGACATTCTCTCTCCCTCCATTTCTCCGCCACCCTGTCCCTTTCTTTCTTCATCTCAAACTATGTTTTACAACTAGCAGTGACTAATGTAAGTTGTTATTATCTAGGAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAGGTAAGTGATTTCTCCCTTAGCAGCTTGTTAATCTTCGCGTCATCTTATTAACAATAACTAAAGAAGGGATATGTTTTCTGCAGCTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGGGTAAGAACCATTACTCTCACATGATCCCTCGTTTTTTAATTTTGCGATATACATTTAACAGTAGATTTTAGGATAATAAGTTGTACTTGCAATTACCTAATGAATCTTTTACACCATCATTGACAACCTAAAACTTAAAACTTGACCGATGTTTTTTGCAGTTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTT</genome_strand>
        <mrna_strand>AGTAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATG.............................................................................GATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG..............................................................................................................GAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG...................................................................................CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG.................................................................................................................................................................TTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCGTATGACGATAGAGGTATTCCGTGGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688893" ref_strand="+" ref_description="SGN-E688893 [t3_tus_55_D24]">
      <seq>tcacagctagcaatgtctttggaatgatgggtgctgcatttgtatccgcagcagagtccacagcaactttttatgctgcatccaggcttgcaggtgccaccacccctccgggccatgttgtgagtagaagcattggcttacagggtataggacagctctttgaccggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatcttcttctccatatttggaaaattcggagcattctttgctccaattcctttgcccatatttgcagctatctactgcatcttatacggtatagtagctgctattggtatttccttcatccaatttgccaacaaaaactccatgcggaatatatacgtgctcggtgtctctctattcctcggtatatctatacctcaatactttgtgatgaacacagatatagctggtcatggacctgttagaactccanctggatggttccatgacatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="26343" stop="24399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26043" g_stop="25988" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="143" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25224" g_stop="25133" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="294" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25022" g_stop="24945" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="372" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24861" g_stop="24701" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="533" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24539" g_stop="24525" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="548" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E688893" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26043" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25133"/>
          <exon e_start="25022" e_stop="24945"/>
          <exon e_start="24861" e_stop="24701"/>
          <exon e_start="24539" e_stop="24525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTGGTATTGACATTCTCTCTCCCTCCATTTCTCCGCCACCCTGTCCCTTTCTTTCTTCATCTCAAACTATGTTTTACAACTAGCAGTGACTAATGTAAGTTGTTATTATCTAGGAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAGGTAAGTGATTTCTCCCTTAGCAGCTTGTTAATCTTCGCGTCATCTTATTAACAATAACTAAAGAAGGGATATGTTTTCTGCAGCTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGGGTAAGAACCATTACTCTCACATGATCCCTCGTTTTTTAATTTTGCGATATACATTTAACAGTAGATTTTAGGATAATAAGTTGTACTTGCAATTACCTAATGAATCTTTTACACCATCATTGACAACCTAAAACTTAAAACTTGACCGATGTTTTTTGCAGTTCAATGACATATTG</genome_strand>
        <mrna_strand>TCACAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCATTTGTATCCGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCCACAGCAACTTTTTATGCTGCATCCAGGCTTGCAGGTGCCACCACCCCTCCGGGCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACCGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG..............................................................................................................GAAAATTCGGAGCATTCTTTGCTCCAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG...................................................................................CTGCTATTGGTATTTCCTTCATCCAATTTGCCAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCANCTGGATGG.................................................................................................................................................................TTCCATGACATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551359" ref_strand="+" ref_description="SGN-E551359 [TUS-55-D24]">
      <seq>tcacagctagcaatgtctttggaatgatgggtgctgcatttgtatcagcagcagagtccacagcaactttttatgctgcatccaggcttgcaggtgccaccacccctccgggccatgttgtgagtagaagcattggcttacagggtataggacagctctttgaccggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatcttcttctccatatttggaaaattcggagcattctttgccccaattcctttgcccatatttgcagctatctactgcatcttatacggtatagtagctgctattggtatttccttcatccaatttgcgaacaaaaactccatgcggaatatatacgtgctcggtgtctctctattcctcggtatatctatacctcaatactttgtgatgaacacagatatagctggtcatggacctgttagaactccagctggatggttccatgacatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="26343" stop="24399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26043" g_stop="25988" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="143" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25224" g_stop="25133" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="294" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25022" g_stop="24945" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="372" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24861" g_stop="24701" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="533" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24539" g_stop="24525" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="548" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E551359" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26043" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25133"/>
          <exon e_start="25022" e_stop="24945"/>
          <exon e_start="24861" e_stop="24701"/>
          <exon e_start="24539" e_stop="24525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTGGTATTGACATTCTCTCTCCCTCCATTTCTCCGCCACCCTGTCCCTTTCTTTCTTCATCTCAAACTATGTTTTACAACTAGCAGTGACTAATGTAAGTTGTTATTATCTAGGAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAGGTAAGTGATTTCTCCCTTAGCAGCTTGTTAATCTTCGCGTCATCTTATTAACAATAACTAAAGAAGGGATATGTTTTCTGCAGCTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGGGTAAGAACCATTACTCTCACATGATCCCTCGTTTTTTAATTTTGCGATATACATTTAACAGTAGATTTTAGGATAATAAGTTGTACTTGCAATTACCTAATGAATCTTTTACACCATCATTGACAACCTAAAACTTAAAACTTGACCGATGTTTTTTGCAGTTCAATGACATATTG</genome_strand>
        <mrna_strand>TCACAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCATTTGTATCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCCACAGCAACTTTTTATGCTGCATCCAGGCTTGCAGGTGCCACCACCCCTCCGGGCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACCGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG..............................................................................................................GAAAATTCGGAGCATTCTTTGCCCCAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG...................................................................................CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG.................................................................................................................................................................TTCCATGACATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701498" ref_strand="+" ref_description="SGN-E701498 [FA16AE12]">
      <seq>ggtcactgatagtgtcttcctttatcaacataatacttggatatggccaagcgtggggaaatcttacaaggtttttcagtcctgtagtcattacgccacttgtctgtgttgtaggtcttggtttgtttggtaggggttttcctcaggtgggtgattgtatagagattggccttcccatgttaattctacttgtcatttctcagcagtatatgcaacgtgttcatccagttgcccaatccatacttgaaaggtttgctttgctcctctgcattgggtttatctgggcttttgctgctattcttactgttgccggtgcttacaaccatgtgaaggagcaaactaagatgaactgccgaattgaccattcgttcctcttgtcatcggctccatggatcaaagttccttaccctttcctgtgggggactcctatattcagagctagcaatgtctttggaatgatgggtgctgcacttgtatcagcagcagagtcaacagcaactttttatgctgcatcaaggcttgcaggtgcgaccacccctccggcccatgttgtgagtagaagcattggcttacagggtataggacagctctttgacgggttctttggtgctattgttggtactactgcatctgttgaaaatgtcggccttctgggactaactcgtgttgggagtagaagagttgttcagatttctactgctttcatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="27184" stop="24849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26884" g_stop="26815" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26814" i_stop="26657" i_length="158">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26656" g_stop="26581" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="146" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26580" i_stop="26489" i_length="92">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26488" g_stop="26429" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="206" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26428" i_stop="26347" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26346" g_stop="26162" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="391" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26161" i_stop="26085" i_length="77">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26084" g_stop="25988" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="488" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25687" g_stop="25601" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="575" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25476" g_stop="25418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="634" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25224" g_stop="25149" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="710" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E701498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26884" e_stop="26815"/>
          <exon e_start="26656" e_stop="26581"/>
          <exon e_start="26488" e_stop="26429"/>
          <exon e_start="26346" e_stop="26162"/>
          <exon e_start="26084" e_stop="25988"/>
          <exon e_start="25687" e_stop="25601"/>
          <exon e_start="25476" e_stop="25418"/>
          <exon e_start="25224" e_stop="25149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAGGTAAGTTGTGTTTTCTGCTTCTAAATACTTTTAACAAGAACCATTAGTGTTGGTTTTGAACTTCGGAATCGTCTTTCCATTGCCTTCCCATTATGTTTCATCGTTGTATTACTTTTCCTGTTGAAAAAATGACATGTCATCCTCCTACTTCTCTGCAGGTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAGGTATTACCCCAAATGTCTATCTAAAATCTTCATTGCTCAAAGAGTTGCATAAACATCATCCAGTTTTCCTTATGATGCTATAATTTGATCAGGTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAGGTAATATATTATTTCATTGACTGTATTTTCGATTTTCTTTTGCTTTACTGGAAGATTGTAATGTTGGTCAAGTCATCTGCAGTATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATGGTACTCAGCTGGACTAAATAATGACAATGTCTTCAGCTCTCTGTCTTCTTCTGACATGTATGTTTTGCTGCGTGTAGGATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAGGTTCACTTTTAATTTTAAATTTTGTTCATTTCCCTTTGTATTAGATTTTCTTTTAGTAACACGAGTTTTAGTACTTGGTTCCACTAACAAATTATGGGTTTAGAGAGAATCACACCCCATGATTGCTTTCTGCTATAATCACTTGGTTTCCTTTCCCTCTAGCTAATTAGTTCACCTTAAAGTCTTATGTGTATATTCTTCTTGATCTTGCATTGATCCGAACCTGAATTGTTTGTGGCATTCACTTAAGCAGTTGTTGTTATGATCTCTTTCAAATTTACCTCAAATATTCATTTGCAGTCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAGGTGCGACATCCACCAAGTGATTCAGCAATGCCTTTTCACTTGAGCACAATTTTTCTTCTAATTTAGCCCCTCCAATTAACTCTTCATTAGAAAGTTGTTCAGTTGTGCTTTGCTTCTTATCCAGGGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGTGTAAGGGTTTTGATCAATTTGGTTGATATATAGTATCAACAGCATGCTTCTCAGTTAGATTTAGTTTATCTTGTTCTAAGTCTTTTACACTACATACCATCCGAGAACTCAGGTGTAGGCTACAGCCTAAAGCTACTTAAGTTTGAATATTGTGGCGCTTCATTCCTAATTTACGCATCATACAAAACTGCAGTGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATC</genome_strand>
        <mrna_strand>GGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAG..............................................................................................................................................................GTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAG............................................................................................GTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAG..................................................................................TATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATG.............................................................................GATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG............................................................................................................................GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT.................................................................................................................................................................................................TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306758" ref_strand="+" ref_description="SGN-E306758 [cLEY-19-N3]">
      <seq>ttttttttttcaatagggaaacctttgttctatcaaagtatattcctcggatggtaaaatacaagaattatcctttagctaaataacagtttatgttgaggcaatctaccaatggttaagaggatcttttgtcgttatcagaattcagtcattccatggagagactgaaactccttttggttggaaaattatatattgtatgaatgcaaatttcacatttatggaaagccttccatgatacattctgcatcttaagaaagaagcttgacaccactcaactccccataagcagtttgatttaagtcttctcatgatagacagctccctcaagagaaaaagagaacatgttacaactcgatactagaaacaaaagcatttaactcggcagtcagagcaatctcaactccaaacattggaggagcggggagctttctaaatcaccatgcttactatgattccaatttcttcacctgacgatagtcaaaaagcataagcaccaattgactcacatgaaaaagtgaccattacatgtcttggacgatttagaagctataatgaattttaagtcgataatatctgcagagactcttccttttcctcatcatcattgaatcccactaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="28764" stop="29987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29064" g_stop="29687" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E306758" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29064" e_stop="29687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTGCTCAATAGGGAAACCTTTGTTCTATCAAAGTATATTCCTCGGATGGTAAAATACAAGAATTATCCTTTAGCTAAATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAACAGTTTGATTTAAGTCTTCTCATGATAGACAGCTCCCTCAAGAGAAAAAGAGAACATGTTACAACTCGATACTAGAAACAAAAGCATTTAACTCGGCAGTCAGAGCAATCTCAACTCCAAACATTGGAGGAGCGGGGAGCTTTCTAAATCACCATGCTTACTATGATTCCAATTTCTTCACCTGACGATAGTCAAAAAGCATAAGCACCAATTGACTCACATGAAAAAGTGACCATTACATGTCTTGGACGATTTAGAAGCTATAATGAATTTTAAGTCGATAATATCTGCAGAGACTCTTCCTTTTCCTCATCATCATTGAATCCCAATACCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTCAATAGGGAAACCTTTGTTCTATCAAAGTATATTCCTCGGATGGTAAAATACAAGAATTATCCTTTAGCTAAATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAGCAGTTTGATTTAAGTCTTCTCATGATAGACAGCTCCCTCAAGAGAAAAAGAGAACATGTTACAACTCGATACTAGAAACAAAAGCATTTAACTCGGCAGTCAGAGCAATCTCAACTCCAAACATTGGAGGAGCGGGGAGCTTTCTAAATCACCATGCTTACTATGATTCCAATTTCTTCACCTGACGATAGTCAAAAAGCATAAGCACCAATTGACTCACATGAAAAAGTGACCATTACATGTCTTGGACGATTTAGAAGCTATAATGAATTTTAAGTCGATAATATCTGCAGAGACTCTTCCTTTTCCTCATCATCATTGAATCCCACTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250810" ref_strand="+" ref_description="SGN-E250810 [cLEG-13-I7]">
      <seq>aataacagtttatgttgacgcaatctaccaatggttaagaggatcttttgtcgttatcagaattcagtcattccatggagagactgaaactccttttggttggaaaattatatattgtatgaatgcaaatttcacatttatggaaagccttccatgatacattctgcatcttaagaaagaagcttgacaccactcaactccccataaccagtttgatttaagtcttctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="28845" stop="29678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29145" g_stop="29378" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E250810" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29145" e_stop="29378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAACAGTTTGATTTAAGTCTTCTCATGAT</genome_strand>
        <mrna_strand>AATAACAGTTTATGTTGACGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAACCAGTTTGATTTAAGTCTTCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253502" ref_strand="+" ref_description="SGN-E253502 [cLEG-24-A6]">
      <seq>gtgaattttaaaatcagaagtattgcttgtaatattaatgtgtttttttgtgctgaagaagaatctacttgtaaagttaaagatgaaaaaattgacacccgcctttttgtgaagtttgtgttttcattttcatggtttgagtgaattttaaaatctaaaagtattcctactgaataacctttttgctgaacaagaatcaacttgtaaaaggttcaacctttttatgttttttaaaatatgtttcagttttctgattgttttgtgtgatagtgtcatctttgagaatgtaaagcttccttccagcagtccttcttgtgttcctgttctttggtataaattgatgccaattttccacatggtctagctttgttcgctcttattgcgagacaatcacaaaaacagaagaggttaaattgttccggttatagtaagattaactgtcagaatgatgaattgctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="30953" stop="29892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30653" g_stop="30192" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E253502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30653" e_stop="30192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAG</genome_strand>
        <mrna_strand>GTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351069" ref_strand="+" ref_description="SGN-E351069 [cTOS-6-D11]">
      <seq>tctgaatcccgattcttggagcgacaccttccatatcaaaaggttggagtcggtgaattccgtatccccaaatttaaaatatcatttggatttgaagcttctaacgttctgaaagggcttggcctggtattacctttctctggtgatggcctcactgagatggtagactcccccgttggcagtaacctctatgtttctaacatctttcacaagtcctttattgaggtaaatgaagagggaacagaagctgcagctgcaactgctggtgttgttaaactaagaggattgatgatggaagagaaagtagactttgttgctgatcatccatacctcttcctgattagagaagatgcaacaggcgtggtactgtttgttggtagtatgcttaatcctctcgctgagtaagtcgtattccactatattgagggtgatatatggtgcttggatcttctttggatcaccctcggactactttagtaccctgagttagctcaaaccaccttcttgcccttctatctcaaccgatactgtgagttcaatttgccaactgctctttgtatggttgaaattcagtgtgacttgtaatggcctacagtggactatgaaataattgacatccaaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="35667" stop="34447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35367" g_stop="34746" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E351069" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35367" e_stop="34746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGATTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGCCCTACCGTGTACTATGAAATAATTGACATCAAAG</genome_strand>
        <mrna_strand>TCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTCTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATGCTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGGGTGATATATGGTGCTTGGATCTTCTTTGGATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGGTTGAAATTCAGTGTGACTTGTAATGGCCTACAGTGGACTATGAAATAATTGACATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354243" ref_strand="+" ref_description="SGN-E354243 [cTOS-16-O14]">
      <seq>tctgaatcccgattcttggagcgacaccttccatatcaaaaggttggagtcggtgaattccgtatccccaaatttaaaatatcatttggatttgaagcttctaacgttctgaaagggcttggcctggtattacctttctctggtgatggcctcactgagatggtagactcccccgttggcagtaacctctatgtttctaacatctttcacaagtcctttattgaggtaaatgaagagggaacagaagctgcagctgcaactgctggtgttgttaaactaagaggattgatgatggaagagaaagtagactttgttgctgatcatccatacctcttcctgattagagaagatgcaacaggcgtggtactgtttgttggtagtatgcttaatcctctcgctgagtaagtcgtattccactatattgaggttgatatatgttgcttgtatcttctttgtatcaccctcggactactttagtaccctgagttagctcaaaccaccttcttgcccttctatctcaaccgatactgtgagttcaatttgccaactgctctttgtatgtttgaaattcagtgtgacttgtaatgccctacagtgtactatgaaataattgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="35667" stop="34451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35367" g_stop="34751" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E354243" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35367" e_stop="34751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGATTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGCCCTACCGTGTACTATGAAATAATTGACAT</genome_strand>
        <mrna_strand>TCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTCTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATGCTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGGTTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGCCCTACAGTGTACTATGAAATAATTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698367" ref_strand="+" ref_description="SGN-E698367 [FA06AD02]">
      <seq>ccggttgacagttcaacaagacttgtgtttgcaaatgcattgtactttaaaggagcctgggacgaaaagtttgatgcatcagtgaccaaggaaagtgagttccaccttctaaatgggacatctattcaagtgcccttcatgactagcaagacgaagcaatatgtaaaagcttttgatggtttcaaggtgttaggccttccgtataaacaaggtgaggatagacgccgtttctccatgtacttctttctgcctgatgccaatgatggactgccagctttggtagacaaggtcagttctgaatcccgattcttggagcgacaccttccatatcaaaaggttggagtcggtgaattccgtatccccaaatttaaaatatcatttggatttgaagcttctaacgttctgaaagggcttggcctggtattacctttctctggtgatggcctcactgagatggtagactcccccgttggcagtaacctttatgtttctaacatctttcacaagtcctttattgaggtaaatgaagagggaacagaagctgcagctgcaactgctggtgttgttaaactaagaggattgatgatggaagagaaagtagactttgttgctgatcatccatacctcttcctgattaaagaagatgcaacaggcgtggtactgtttgttggtactatgcttaatcctctcgctgagtaagtcgtattccactatattgaggttgatatatgctgcttgtatcttctttgtatcacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="35960" stop="34605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35661" g_stop="34904" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E698367" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35661" e_stop="34904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGATTGATATATGTTGCTTGTATCTTCTTTGTATCACCCT</genome_strand>
        <mrna_strand>CCGGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAAAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTACTATGCTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGGTTGATATATGCTGCTTGTATCTTCTTTGTATCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701979" ref_strand="+" ref_description="SGN-E701979 [FA17BH07]">
      <seq>gcctcttaagcattctttcaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggctgttgaggttgccagtcaagtgaatcaatgggctgaaaaggaaacaaatgggcttatcaaagaaatacttccagctgactcagttgacagttcaacaagacttgtgtttgcaaatgcattgtactttaaaggagcctgggacgaaaagtttgatgcatcagtgaccaaggaaagtgagttccaccttctaaatgggacatctattcaagtgcccttcatgactagcaagacgaagcaatatgtaaaagcttttgatggtttcaaggtgttaggccttccgtataaacaaggtgaggatagacgccgtttctccatgtacttctttctgcctgatgccaatgatggactgccagctttggtagacaaggtcagttctgaatcccgattcttggagcgacaccttccatatcaaaaggttggagtcggtgaattccgtatccccaaatttaaaatatcatttggatttgaagcttctaacgttctgaaagggcttggcctggtattacctttctctggtgatggcctcactgagatggtagactcccccgttggcagtaacctttatgtttctaacatctttcacaagtcctttattgaggtaaatgaagagggaacagaagctgcagctgcaactgctggtgttgttaaactaagaggattgatgatggaagagaaagtagactttgttgctgatcatccatacctcttcctgattagagaagatgcaacaggcgtggtactgtttgttggtagtatgcttaatcctctcgctgagtaagtcgtatttcactatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37427" stop="34646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37127" g_stop="37049" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37048" i_stop="35743" i_length="1306">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35742" g_stop="34946" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="875" r_length="797" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E701979" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37127" e_stop="37049"/>
          <exon e_start="35742" e_stop="34946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGAAGAAAGGAGCTTTTTGGATGCTGTATGGTGAGAACTTCAGCCAACTGGGTGGAACTAGGAAGTTGTTTTCTTGATGACCAACAAACTCAAGTAAGGCCAAGAAAACTAGCATAACCTGTGGTAGAATTTCGATCAGTGAGTTTGCCAGCCCAGTCAGGATTGGAAAACACCGAGAGATTTAGACTGGTGCTTGGAGCAATTCGAAGGCCATAGTTAGCAGTGCTTTTGAGATATGGAATGAGGCATTTAACAGTCTTCCAGTGAGCATCAGATGGAGTATGTGTAAATTGAGACAATTTGTTCACTTAGAAAGAAACATCAGGCCGAGTAAAAGACAAGTATTGCAACTTTCCACTTACTTTTCTTGTATTTGGTAGCATCAGGAGATGCAGGATCAGCCGAAGTAGTCCTGTTTTATATTTTGTTACATAAGAGATTCAGTTTGATTAATGTTTATGCTCGAGGGATTGTCATTTCTACTTTTAGCTAAGATAAGACTTTTAGTGAACTTCATATTTTTGACATTGGAAATTTAGCTGCTTCGGCTTTTATCTTTATTTGTACCTTTTCCTTTTAGCTGGAGACTGAACTATGAACATATTGGGTATGCATTTGCACTAGTGATAAACAGCAGGCCAATATATGGTGTCTCATATATTTTCACTATGCTTATCATTCACTTTAATCTCAAATACTGATGTATTGCTACCCTCTTTGGAAATCGAAGAAGTTCTGCGATCATTGCTTAAAAAACTGACTATACTCTTCAAACATTTCTGTTTCTCTGCAGCCTTAGCATGGATAGTTTTACAGTTATACTGACCTATATTAACATTAGTCACCCAGTAGTTGGAGCTAGACTCATATTAAAAGGATAGCATTGAAGTGAATATAAAATAAAAATAATCCTTTGAATAAATTATTATTACAAAAGTTTGGATGGTTTGTAGGCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAGTGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATAT</genome_strand>
        <mrna_strand>GCCTCTTAAGCATTCTTTC-AACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAATGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATGCTTAATCCTCTCGCTGAGTAAGTCGTATTTCACTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730326" ref_strand="+" ref_description="SGN-E730326 [LA23DB08]">
      <seq>ctcataaaattcttcattcacaaaactcaaaaatctccatagcaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtctatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgttgaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggctgttgaggttgccagtcaagtgaatcaatgggctgaaaaggaaacaaatgggcttatcaaagaaatacttccagctgactcagttgacagttcaacaagacttgtgtttgcaaatgcattgtactttaaaggagcctgggacgaaaagtttgatgcatcagtgaccaaggaaagtgagttccaccttctaaatgggacatctattcaagtgcccttcatgactagcaagacgaagcaatatgtaaaagcttttgatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37788" stop="35181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37488" g_stop="37049" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37048" i_stop="35743" i_length="1306">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35742" g_stop="35481" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="702" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E730326" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37488" e_stop="37049"/>
          <exon e_start="35742" e_stop="35481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGAAGAAAGGAGCTTTTTGGATGCTGTATGGTGAGAACTTCAGCCAACTGGGTGGAACTAGGAAGTTGTTTTCTTGATGACCAACAAACTCAAGTAAGGCCAAGAAAACTAGCATAACCTGTGGTAGAATTTCGATCAGTGAGTTTGCCAGCCCAGTCAGGATTGGAAAACACCGAGAGATTTAGACTGGTGCTTGGAGCAATTCGAAGGCCATAGTTAGCAGTGCTTTTGAGATATGGAATGAGGCATTTAACAGTCTTCCAGTGAGCATCAGATGGAGTATGTGTAAATTGAGACAATTTGTTCACTTAGAAAGAAACATCAGGCCGAGTAAAAGACAAGTATTGCAACTTTCCACTTACTTTTCTTGTATTTGGTAGCATCAGGAGATGCAGGATCAGCCGAAGTAGTCCTGTTTTATATTTTGTTACATAAGAGATTCAGTTTGATTAATGTTTATGCTCGAGGGATTGTCATTTCTACTTTTAGCTAAGATAAGACTTTTAGTGAACTTCATATTTTTGACATTGGAAATTTAGCTGCTTCGGCTTTTATCTTTATTTGTACCTTTTCCTTTTAGCTGGAGACTGAACTATGAACATATTGGGTATGCATTTGCACTAGTGATAAACAGCAGGCCAATATATGGTGTCTCATATATTTTCACTATGCTTATCATTCACTTTAATCTCAAATACTGATGTATTGCTACCCTCTTTGGAAATCGAAGAAGTTCTGCGATCATTGCTTAAAAAACTGACTATACTCTTCAAACATTTCTGTTTCTCTGCAGCCTTAGCATGGATAGTTTTACAGTTATACTGACCTATATTAACATTAGTCACCCAGTAGTTGGAGCTAGACTCATATTAAAAGGATAGCATTGAAGTGAATATAAAATAAAAATAATCCTTTGAATAAATTATTATTACAAAAGTTTGGATGGTTTGTAGGCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAGTGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTT</genome_strand>
        <mrna_strand>CTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGCAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCTATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAATGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698872" ref_strand="+" ref_description="SGN-E698872 [FA07DD10]">
      <seq>ttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgttgaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgctgattttcagaaaaaggctgttgaggttgccagccaagtgaatcaatgggctgaaaaggaaacaaatgggcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37681" stop="35384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37381" g_stop="37049" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37048" i_stop="35743" i_length="1306">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35742" g_stop="35684" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="392" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E698872" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37381" e_stop="37049"/>
          <exon e_start="35742" e_stop="35684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGAAGAAAGGAGCTTTTTGGATGCTGTATGGTGAGAACTTCAGCCAACTGGGTGGAACTAGGAAGTTGTTTTCTTGATGACCAACAAACTCAAGTAAGGCCAAGAAAACTAGCATAACCTGTGGTAGAATTTCGATCAGTGAGTTTGCCAGCCCAGTCAGGATTGGAAAACACCGAGAGATTTAGACTGGTGCTTGGAGCAATTCGAAGGCCATAGTTAGCAGTGCTTTTGAGATATGGAATGAGGCATTTAACAGTCTTCCAGTGAGCATCAGATGGAGTATGTGTAAATTGAGACAATTTGTTCACTTAGAAAGAAACATCAGGCCGAGTAAAAGACAAGTATTGCAACTTTCCACTTACTTTTCTTGTATTTGGTAGCATCAGGAGATGCAGGATCAGCCGAAGTAGTCCTGTTTTATATTTTGTTACATAAGAGATTCAGTTTGATTAATGTTTATGCTCGAGGGATTGTCATTTCTACTTTTAGCTAAGATAAGACTTTTAGTGAACTTCATATTTTTGACATTGGAAATTTAGCTGCTTCGGCTTTTATCTTTATTTGTACCTTTTCCTTTTAGCTGGAGACTGAACTATGAACATATTGGGTATGCATTTGCACTAGTGATAAACAGCAGGCCAATATATGGTGTCTCATATATTTTCACTATGCTTATCATTCACTTTAATCTCAAATACTGATGTATTGCTACCCTCTTTGGAAATCGAAGAAGTTCTGCGATCATTGCTTAAAAAACTGACTATACTCTTCAAACATTTCTGTTTCTCTGCAGCCTTAGCATGGATAGTTTTACAGTTATACTGACCTATATTAACATTAGTCACCCAGTAGTTGGAGCTAGACTCATATTAAAAGGATAGCATTGAAGTGAATATAAAATAAAAATAATCCTTTGAATAAATTATTATTACAAAAGTTTGGATGGTTTGTAGGCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAGTGGGCTTAT</genome_strand>
        <mrna_strand>TTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGCTGATTTTCAGAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAGGTTGCCAGCCAAGTGAATCAATGGGCTGAAAAGGAAACAAATGGGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260868" ref_strand="+" ref_description="SGN-E260868 [cLEG-55-A24]">
      <seq>ttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaaatgcttgatgagataactgttatatgaagagatctgttgaatttgagtttttgagttgtttatggggaaattttgatgttattcagttccaagtactctctccgttttaatttgtttgtctgttttaacttgatatggagatatggagtttaagaagtagtttcaaatggtggaagatnaaccagtaaacaacggaaataaaataacaagaactcctaaaatggtggaacaaaaaatacaacctatgcnaataaacaagtactaacaaatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37799" stop="36393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37499" g_stop="36693" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E260868" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37499" e_stop="36693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGA</genome_strand>
        <mrna_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAAGTACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATNAACCAGTAAACAACGGAAATAAAATAACAAGAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCNAATAAACAAGTACTAACAAATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262477" ref_strand="+" ref_description="SGN-E262477 [cLEG-56-D6]">
      <seq>ttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaaatgcttgatgagataactgttatatgaagagatctgttgaatttgagtttttgagttgtttatggggaaattttgatgttattcagttccaagtactctctccgntttattttgtttgtctgttttaacttgatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37799" stop="36530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37499" g_stop="36830" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E262477" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37499" e_stop="36830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGG</genome_strand>
        <mrna_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAAGTACTCTCTCCGNTTTATTTTGTTTGTCTGTTTTAACTTGATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261373" ref_strand="+" ref_description="SGN-E261373 [cLEG-57-E14]">
      <seq>ttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcagcgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctagtggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaaatgcttgatgagataactgttatatgaagagatctgttgaatttgagtttttgagttgtttatggggaaattttgatgttattcagttccaagtactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37799" stop="36569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37499" g_stop="36869" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E261373" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37499" e_stop="36869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCT</genome_strand>
        <mrna_strand>TTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAAGTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551093" ref_strand="+" ref_description="SGN-E551093 [TUS-55-D19]">
      <seq>cttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcaacgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctaatggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaactgcttgatgagatcactgttatatgaagagatctgttgaatttgagttcttgagttgtttatgggggaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37800" stop="36591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37500" g_stop="36891" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E551093" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37500" e_stop="36891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGAT</genome_strand>
        <mrna_strand>CTTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAACGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAATGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAACTGCTTGATGAGATCACTGTTATATGAAGAGATCTGTTGAATTTGAGTTCTTGAGTTGTTTATGGGGGAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688889" ref_strand="+" ref_description="SGN-E688889 [t3_tus_55_D19]">
      <seq>cttttttgttgactcataaaattcttcattcacaaaactcaaaaatctccattgaaatggaccttcaagaatcaatcagcaaccaaacaggcgtatccttaacgctagccaaacatgttttctccactgaggttaaaggggacaccacgaacatggtcttctcccctttgtcgatccatgtagtgttgggtctcatagcaacgggttcaaatggcccgacccgtgaccaattgctcagtttcctcaaatcgaagtgtactgatgaactaaactctctttcttctcagattgtagaggttgtctttgctgatggtagccctaatggtgggcctcgactttcggttgctaatagcgtctgggttgaacagactttgcctcttaagcattctttcaaacagattgtggacaatgtttataaggctacttcttcttctgttgattttcagaaaaaggttcgatttttaacgccccatttttatttagagctattttctttcaatttttcaaatataattgattgattctgttatgaactgcttgatgagatcactgttatatgaagagatctgttgaatttgagttcttgagttgtttatgggggaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="37800" stop="36591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37500" g_stop="36891" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E688889" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37500" e_stop="36891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGAT</genome_strand>
        <mrna_strand>CTTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATTGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAACGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTAGAGGTTGTCTTTGCTGATGGTAGCCCTAATGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAATTGATTGATTCTGTTATGAACTGCTTGATGAGATCACTGTTATATGAAGAGATCTGTTGAATTTGAGTTCTTGAGTTGTTTATGGGGGAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352820" ref_strand="+" ref_description="SGN-E352820 [cTOS-11-O17]">
      <seq>tttaaagtgttgaagtttccttataaacagggcacagatacacgttgcttctcaatgtatttcattctcccagatgcacatgatggattgcccgctttatttgataaaattagtacagaacctggattcttaactcaccacgttccatttagaaaagtcagggtgggcaagtttcttattcctaaattcaaaataaccttcgagtttgaagcttccgacattctaaagggacttggcctaacgttacctttctgcggtggtggtctcactgagatggttgattccactttacctgagaatccatctgtttcaaaagtttttcacaagtctttcattgagataaatgaggaaggcaccgaagctgcagctgttacagctggtgtaataatgaccacgtctcttagaattgagaaagaaatcgactttgttgctgaccatccattcctgttccttataagagacgacgctactggtgttgtgttgttcatagggagcgtgctgaatcctctttctggttaataagaccatatagcatgattatatacaactttgtaaagaaggacagttcacagtttcctctcttgtgtttctgtttgatgagagatgctatgtatctaaataaccagtttccagatttgtgtattattttgatgagatcttctactgtcttttgcaccttatatatttgactcttctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="40987" stop="39689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40687" g_stop="39989" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E352820" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40687" e_stop="39989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATAATTGACTCTTCTATG</genome_strand>
        <mrna_strand>TTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGCCTAACGTTACCTTTCTGCGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATATTTGACTCTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288203" ref_strand="+" ref_description="SGN-E288203 [cLES-7-H20]">
      <seq>taaagggacttttgctaacattacctttctgtggtggtggtctcactgagatggttgattccactttacctgagaatccatctgtttcaaaagtttttcacaagtctttcattgagataaatgaggaaggcaccgaagctgcagctgttacagctggtgtaataatgaccacgtctcttagaattgagaaagaaatcgactttgttgctgaccatccattcctgttccttataagagacgacgctactggtgttgtgttgttcatagggagcgtgctgaatcctctttctggttaataagaccatatagcatgattatatacaactttgtaaagaaggacagttcacagtttcctctcttgtgtttctgtttgatgagagatgctatgtatctaaataaccagtttccagatttgtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="40764" stop="39746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40464" g_stop="40047" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="430"/>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E288203" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40464" e_stop="40047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGT</genome_strand>
        <mrna_strand>TAAAGGGACTTTTGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353414" ref_strand="+" ref_description="SGN-E353414 [cTOS-15-D2]">
      <seq>tttaaagtgttgaagtttccttataaacagggcacagatacacgttgcttctcaatgtatttcattctcccagatgcacatgatggattgcccgctttatttgataaaattagtacagaacctggattcttaactcaccacgttccatttagaaaagtcagggtgggcaagtttcttattcctaaattcaaaataaccttcgagtttgaagcttccgacattctaaagggacttggcctaacgttacctttctgcggtggtggtctcactgagatggttgattccactttacctgagaatccatctgtttcaaaagtttttcacaagtctttcattgagataaatgaggaaagcaccgaagctgcagctgttacagctggtgtaataatgaccacgtctctttaaattgagaaagaaatcgacttttgtgctgaccatccattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="40987" stop="39942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40687" g_stop="40242" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E353414" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40687" e_stop="40242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCT</genome_strand>
        <mrna_strand>TTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGCCTAACGTTACCTTTCTGCGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAAGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTTAAATTGAGAAAGAAATCGACTTTTGTGCTGACCATCCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303845" ref_strand="+" ref_description="SGN-E303845 [cLEX-4-P18]">
      <seq>ccaatttgattaaggctgctgaagttgtcgatcaagtcaatcagtggactaaaatgaagacaaatggtctcatcgaagagattcttgatcgtgatgcagtggacaacatgacgaggctgatcttggccaatgcactatatttcaaaggtgaatggaatgagaagttcgatgcttcagaaacaaaagaccatgagttccatctcctcgatgcattgcctattcgagtacccttcatgactagcacgaagaagcactacatagcaggatttaatggctctaaagtgttgaagtttccttataaacagggcacagatacacgttgcttctcaatgtatttcattctcccagatgcacatgatggattgcccgctttatttgataaaattagtacagaacctggattcttaactcaccacgttccatttagaaaagtcagggtgggcacgtttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="41262" stop="40210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40962" g_stop="40510" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E303845" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40962" e_stop="40510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTGATTAAGGCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTA</genome_strand>
        <mrna_strand>CCAATTTGATTAAGGCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCACGAAGAAGCACTACATAGCAGGATTTAATGGCTCTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCACGTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723274" ref_strand="+" ref_description="SGN-E723274 [FC20AA08]">
      <seq>tcggccgaattgattctactcactatcccccttcttcttcttcttgttcgcgtgcaaatatggatcttcgagagtcaaccaccagccagacggatgtttctttcatgcttgctaagcatgttttctccaacgcggttaaaggcgataccaacctggtgctctctcctctttcaattcaaatagttcttggccttattgctgctggctctaatggacctactcagaatcagctactctctttcctcaagtccaattccattgatgaactcaactctctttattcacatatttccagtttcgtctttgctgatggcagccccaatggaggtccgcgattgtccgttgctaatggtatttggatcgatcaaacgctgcctttgaagccatctttcaaacaggttgtggataatgtttacaaggctgcttcagaatatgttgattttcaaaacaaggctgctgaagttgtcgatcaagtcaatcagtggactaaaatgaagacaaatggtctcatcgaaaagattcttgatcgtgatgcagtggacaacatgacgaggctgatcttggctaatgcactatatttcaaaggagaatggaatgagaagttcgatgcttcagaaacaaaagaccacgagttccatctcctcgatggattgcctgttcgagtaccctttatgactagcaagaagaagcagtacataccaggatttaatggctttaaagtgttgaagtttccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="42049" stop="40364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41757" g_stop="41306" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41305" i_stop="40949" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40948" g_stop="40664" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="737" r_length="285" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E723274" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41757" e_stop="41306"/>
          <exon e_start="40948" e_stop="40664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTAAGGCCTTCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAGGTTAGGCCTTTGTTAATTTCATACTCTCTCCGCTTCAATTTATTTCTCGTACTTTTTAAGCCTTCAAAAGAAGAGAGCCTTGGTGTGGCTGGTAAAGTTGTTGTCATGTGACTAGGTCATCGATCAAGCTGTGAAAATAATTTCTTGCAGAAATGCAAGATACAACTGCATGAAATAGACTCTTATGGTCTAGCCAGTAGCCTTTCACTGTACCACGCACATGAGGGGAGCTTAGTGCACTGATTTCCCTTTTATAAGCCTCCAAACGTTCTTATGTGATATGAATACAAATGAGCAATTACTAATATGAAATGTCTAATTCTATCATTCCATGTTTGTCTTGCCAATTTGATTAAGGCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTAT</genome_strand>
        <mrna_strand>TCGGCCGAATTGATTCTACTCACTATCCCCCTTCTTCTTCTTCTTGTTCGCGTGCAAATATGGATCTTCGAGAGTCAACCACCAGCCAGACGGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAATTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTGAAGCCATCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................GCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAAAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCTAATGCACTATATTTCAAAGGAGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCACGAGTTCCATCTCCTCGATGGATTGCCTGTTCGAGTACCCTTTATGACTAGCAAGAAGAAGCAGTACATACCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278705" ref_strand="+" ref_description="SGN-E278705 [cLER-2-C11]">
      <seq>aaatatggatcttcgagagtcaatcaccagccagactgatgtttctttcatgcttgctaagcatgttttctccaacgcggttaaaggcgataccaacctggtgctctctcctctttcaattcaaatagttcttggccttattgctgctggctctaatggacctactcagaatcagctactctctttcctcaagtccagttccattgatgaactcaactctctttattcacatatttccagtttcgtctttgctgatggcagccccaatggaggtccgcgattgtccgttgctaatggtatttggatcgatcaaacgctgcctttaaggccttctttcaaacaggttgtggataatgtttacaaggctgcttcagaatatgttgattttcaaaacaaggctgctgaagttgtcgatcaagtcaatcagtggactaaaatgaagacaaatggtctcatcgaagagattcttgatcgtgatgcagtggacaacatgacgaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="42002" stop="40545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41702" g_stop="41306" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41305" i_stop="40949" i_length="357">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40948" g_stop="40845" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="501" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E278705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41702" e_stop="41306"/>
          <exon e_start="40948" e_stop="40845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTAAGGCCTTCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAGGTTAGGCCTTTGTTAATTTCATACTCTCTCCGCTTCAATTTATTTCTCGTACTTTTTAAGCCTTCAAAAGAAGAGAGCCTTGGTGTGGCTGGTAAAGTTGTTGTCATGTGACTAGGTCATCGATCAAGCTGTGAAAATAATTTCTTGCAGAAATGCAAGATACAACTGCATGAAATAGACTCTTATGGTCTAGCCAGTAGCCTTTCACTGTACCACGCACATGAGGGGAGCTTAGTGCACTGATTTCCCTTTTATAAGCCTCCAAACGTTCTTATGTGATATGAATACAAATGAGCAATTACTAATATGAAATGTCTAATTCTATCATTCCATGTTTGTCTTGCCAATTTGATTAAGGCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCT</genome_strand>
        <mrna_strand>AAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTAAGGCCTTCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................GCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301007" ref_strand="+" ref_description="SGN-E301007 [cLEW-22-G5]">
      <seq>tgtgatcttcagagaaattaaaagtctttatttgttgttatgtgttttactgaatcaaattcaaatgcaaaaccccacctgttaagtaacagtttagtatataaattcttgcaaacctttcaactttgtgatcattcattctactcactatcctccttcttcttcttcgttttcgcgtgcaaatatggatcttcgagagtcaatcaccagccagactgatgtttctttcatgcttgctaagcatgttttctccaacgcggttaaaggcgataccaacctggtgctctctcctctttcaattcaaatagttcttggccttattgctgctggctctaatggacctactcagaatcagctactctctttcctcaagtccagttccattgatgaactcaactctctttattcacatatttccagtttcgtctttgctgatggcagccccaatggaggtccgcgattgtccgttgctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="42182" stop="41107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41882" g_stop="41407" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E301007" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41882" e_stop="41407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATCTTCAGAGAAATTAAAAGTCTTTATTTGTTGTTATGTGTTTTACTGAATCAAATTCAAATGCAAAACCCCACCTGTTAAGTAACAGATTAGTATATAAATTCTTGCAAACCTTTCAACTTTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATG</genome_strand>
        <mrna_strand>TGTGATCTTCAGAGAAATTAAAAGTCTTTATTTGTTGTTATGTGTTTTACTGAATCAAATTCAAATGCAAAACCCCACCTGTTAAGTAACAGTTTAGTATATAAATTCTTGCAAACCTTTCAACTTTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689311" ref_strand="+" ref_description="SGN-E689311 [t3_tus_84_A20]">
      <seq>tgccatatacccgtcatgggactaactcactctcgctctcatcattctcattcttattcgtctagttctttccatgatcaacgtattgatatggaaatgagtgaatcaatcaccacccaaacggatgtttctttcattctcgcaaagcatgtcttttccaaagagattaaaggcgataccaacctcgtgttctctcctctctcgattcaaatagtactaggcctgattgctgcaggctcaaaggggccaactaaggatcaactactctgtttcctcaagtccaaatccatcgatgaactcaattctctgtattctcatcttgtcaatatcgtctttgttgatggaagccccaatggaggtccacgtttgtccgttgctaatagtgtttggatcgatcaaacactgccttttaagccttcttttaaaaaggttgtggataacatttacaaggctgcttcaaattctgttgattttcagaacaaggctactgaagttgccaaccatgtcaatcattgggccaaaatgaagacaaatgatctcatcaaagagattcttcctcatggtacagtaaacaatatgacaaggctcatctttgcaaacgcgctatattttaaaggagtgtggaacgacnagttcaatgcttcagaaacaaaagactatgaattccatctcctcagaggagggtctattaaagcacctttcatgaccagtaataagaagcagtatgcagtagcctttgatggctttaaagtattggtacttcattacaaacaaggtagagacactacgcgtcatttctgtatgtatctatntttgccagatgctcgtgatggactaccagctttagtaaacaaaatcaattcagaaccaggatttttaaaccaccatgttccgtttgaaaagactaaaatgcgcaggttacttatccctaaattcaaaacacttttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="44182" stop="42532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43882" g_stop="43400" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43399" i_stop="43299" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43298" g_stop="42830" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="951" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E689311" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43882" e_stop="43400"/>
          <exon e_start="43298" e_stop="42830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGGTGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAGGTAGGCCTTTTTGTAATTTGTTTCATTGAAATTCCACTTTGTTAAGTTAAGCATAATGCTGATTCTGTCGTAAAATCTGTTTGTTTTACTAATTGATTAAGGCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACAAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTCCTCAGAGGAGGGTCTATTAAAGCACCTTTCATGACCAGTAATAAGAAGCAGTATGCAGTAGCCTTTGATGGCTTTAAAGTATTGGTACTTCATTACAAACAAGGTAGAGACACTACGCGTCATTTCTGTATGTATCTATTTTTGCCAGATGCTCGTGATGGACTACCAGCTTTAGTAGACAAAATCAATTCAGAACCAGGATTTTTAAACCACCATGTTCCGTTTGAAAAGACTAAAATGCGCAAGTTACTTATCCCTAAATTCAAAACAACTTTTGGTT</genome_strand>
        <mrna_strand>TGCCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGATGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAG.....................................................................................................GCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACNAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTCCTCAGAGGAGGGTCTATTAAAGCACCTTTCATGACCAGTAATAAGAAGCAGTATGCAGTAGCCTTTGATGGCTTTAAAGTATTGGTACTTCATTACAAACAAGGTAGAGACACTACGCGTCATTTCTGTATGTATCTATNTTTGCCAGATGCTCGTGATGGACTACCAGCTTTAGTAAACAAAATCAATTCAGAACCAGGATTTTTAAACCACCATGTTCCGTTTGAAAAGACTAAAATGCGCAGGTTACTTATCCCTAAATTCAAAAC-ACTTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332315" ref_strand="+" ref_description="SGN-E332315 [cTOD-17-N3]">
      <seq>ccatatacccgtcatgggactaactcactctcgctctcatcattctcattcttattcgtctagttctttccatgatcaacgtattgatatggaaatgagtgaatcaatcaccacccaaacggatgtttctttcattctcgcaaagcatgtcttttccaaagagattaaaggcgataccaacctcgtgttctctcctctctcgattcaaatagtactaggcctgattgctgcaggctcaaaggggccaactaaggatcaactactctgtttcctcaagtccaaatccatcgatgaactcaattctctgtattctcatcttgtcaatatcgtctttgttgatggaagccccaatggaggtccacgtttgtccgttgctaatagtgtttggatcgatcaaacactgccttttaagccttcttttaaaaaggttgtggataacatttacaaggctgcttcaaattctgttgattttcagaacaaggctactgaagttgccaaccatgtcaatcattgggccaaaatgaagacaaatgatctcatcaaagagattcttcctcatggtacagtaaacaatatgacaaggctcatctttgcaaacgcgctatatttttaaggagtgtggaacgacnagttcaatgcttcagaaacaaagactatgaattccatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="44180" stop="42810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43880" g_stop="43400" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43399" i_stop="43299" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43298" g_stop="43110" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="669" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E332315" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43880" e_stop="43400"/>
          <exon e_start="43298" e_stop="43110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGGTGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAGGTAGGCCTTTTTGTAATTTGTTTCATTGAAATTCCACTTTGTTAAGTTAAGCATAATGCTGATTCTGTCGTAAAATCTGTTTGTTTTACTAATTGATTAAGGCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACAAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTC</genome_strand>
        <mrna_strand>CCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGATGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAG.....................................................................................................GCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTTAAGGAGTGTGGAACGACNAGTTCAATGCTTCAGAAAC-AAAGACTATGAATTCCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="48507" stop="47564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48207" g_stop="47822" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47821" i_stop="47570" i_length="252">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47569" g_stop="47564" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="386" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48207" e_stop="47822"/>
          <exon e_start="47569" e_stop="47564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTGAAAATGACTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTTGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTTTGTTTCTGTTTCTGTTCATTAACTTCATAAATATAAGTTATTGTAAGAATAACAAATCAACGCCAAATCATCGGCTTTGGATTCGTTGCTTATTTACTTGGAATTGAATTGAGATATTTTCTATGACTTTGGACAATTCCACAACTCGATCACACATGCCCTTTAATGAAATATTTTCGTAGTTTCTATGTTTTTTTTAGTGGTTTTACGCTGTAGATTTGAACTTAAGAAGGTATAAAAAGAAGATAAAAATTGTAAATTTGTTGATAGTTAACACTATATTGCCGGTTTTTGTCATCTATCAAAGGCATAA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAA............................................................................................................................................................................................................................................................TCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="48453" stop="47564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48153" g_stop="47818" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48153" e_stop="47818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTTGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTTTGTTTCTGTTTCTGTTCATTAACTTCATAAATATAAGTTATTGTAAGAATAACAAATCA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAAC-AATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="48515" stop="47691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48217" g_stop="47991" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48217" e_stop="47991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGTTCCTTACTGAAAATGACTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTTGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303397" ref_strand="+" ref_description="SGN-E303397 [cLEX-2-N9]">
      <seq>gtttggcttagcaaaagagaagcttacaatctaaatggggatttgcagaaatgtcaagactgaagaaaagcaacttcaaaagaaggggggaactagagcagctctttttgtctatgttgtggcgggaatcgataccatggcttttatttcaaagggtgtgagcctggtgacttacttctgtgggtatatgaacttcagcttaacgaaatctgccaacactgtgacaaacttcatgggaacagcgtttttgctctcattatttggagcgtttctctcagatacttacttctccagattcaagacttgtgtcctatttagcatcattcaagttttgggatttgcactgctaggagttcaagcgcatttcagtcaactgagaccatttccctgcaaggatgtacctttaagccaaaacgatcaatgtgaatctgcagatgcaggccaattggcaatcttgtatggaggtgtttatctggtagcacttggaaacagtggagtcaaagcggctttgccatcattaggtgctgatcaatttgatgaaaagggtcccaaaggggctgctaagctatcaagttacttcaattggctactgttcttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="52715" stop="54840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53015" g_stop="53051" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53052" i_stop="53164" i_length="113">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53165" g_stop="53243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="116" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53244" i_stop="53952" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53953" g_stop="54170" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="334" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54171" i_stop="54272" i_length="102">
            <donor d_prob="0.002" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54273" g_stop="54540" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="602" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E303397" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53015" e_stop="53051"/>
          <exon e_start="53165" e_stop="53243"/>
          <exon e_start="53953" e_stop="54170"/>
          <exon e_start="54273" e_stop="54540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCTTAGCAAAAGAGAAGCTTACAATCTAAATGGTAAGTTAAATTAGCAATTATATGTTTTTAGAATATGAAGTATTAGTATTTTTTCCAAAGTTAAGAAATGTTTGGCTAAAATATAAATAGTTTTATTTTGATAATTGTTGCAGGGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATGGTAAGCATATTTCAAGTATATAATTGTTTAACTCTCTTATGCTTATATATGGAATACTACGGGCGGAGCCACCTTAGACGAAGGATGATCTGGTGAGATTAAATGTCAGGGGAACTTTTATATTGTAGTGGTCAGTTTTGAAACTGTAAAGATATAGCACATGGGTTTAACTTAACCTCAATTGAAGCGGTAATATAGCATGCTTTGAGTTGAAGGTTTGAAACTATAAAGATATAACATATGGACTTAACCCCAATTAATACTGCAAAGATATAACATATGAATTTGTGTGTGAACCTCACATGTATTCTGAGTAAATTGATTGAGACATGTATTCTAAGTAAATTGGTTGAGGTTGGTTGATTGACCGAACCTCGTAAAATTTGTCTCATTTGGTGTGTTTCTCGTTTGTCTTCTTGCTCATGGTCTTTCGAAATTTGCTTTGCTAGTTTACGCATTATACCTACTTATTTCGGCCCTAACAAATTGGGTGTAAAGATATGACGCCTAATTCGACCCCCAATAACTAGCTCATTAGGGAAGATTTGTCCAAGTCCATATAAGGACCCAATAACTAGCTCATGAGGGAAGATTGTCCCCATCCCTCTACCAATGTGAGACTTCTTAACCGAAACCACTAGTAATAAATCCTGACTCTGCCACTGATTTTAACTATGGAGTTTTGATATTCTGATGTCTGATTATGCAGTTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTGGTACTTGTTTATTTATACATCTTCGCTATGAAAGAGAAAAACATATATTTCAAAGGTCCATGCAGGATCAAGAATTGACTTTGATTATTCTTTCAATGTTAGGGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCA</genome_strand>
        <mrna_strand>GTTTGGCTTAGCAAAAGAGAAGCTTACAATCTAAATG.................................................................................................................GGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTGTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTG......................................................................................................GGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303193" ref_strand="+" ref_description="SGN-E303193 [cLEX-5-N8]">
      <seq>agaagcttacaatctaaatggggatttgcagaaatgccaagactgaagaaaagccacttcaaaagaaggggggaactagagcagctctttttgtctatgttgtggcgggaatcgataccatggcttttatttcaaagggtgtgagcctggtgacttacttctgtgggtatatgaacttcagcttaacgaaatctgccaacactgtgacaaacttcatgggaacagcgtttttgctctcattatttggagcgtttctctcagatacttacttctccagattcaagacttgtgtcctatttagcatcattcaagttttgggatttgcactgctaggagttcaagcgcatttcagtcaactgagaccatttccctgcaaggatgtacctttaagccaaaacgatcaatgtgaatctgcagatgcaggccaattggcaatcttgtatggaggtgtttatctggtagcacttggaaacagtggagtcaaagcggctttgccatcattaagtgctgatcaatttgatgaaaagggtcccaaaggggctgctaagctatcaagttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="52732" stop="54818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53032" g_stop="53051" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53052" i_stop="53164" i_length="113">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53165" g_stop="53243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="99" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53244" i_stop="53952" i_length="709">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53953" g_stop="54170" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="317" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54171" i_stop="54272" i_length="102">
            <donor d_prob="0.002" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54273" g_stop="54518" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="563" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E303193" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53032" e_stop="53051"/>
          <exon e_start="53165" e_stop="53243"/>
          <exon e_start="53953" e_stop="54170"/>
          <exon e_start="54273" e_stop="54518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTTACAATCTAAATGGTAAGTTAAATTAGCAATTATATGTTTTTAGAATATGAAGTATTAGTATTTTTTCCAAAGTTAAGAAATGTTTGGCTAAAATATAAATAGTTTTATTTTGATAATTGTTGCAGGGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATGGTAAGCATATTTCAAGTATATAATTGTTTAACTCTCTTATGCTTATATATGGAATACTACGGGCGGAGCCACCTTAGACGAAGGATGATCTGGTGAGATTAAATGTCAGGGGAACTTTTATATTGTAGTGGTCAGTTTTGAAACTGTAAAGATATAGCACATGGGTTTAACTTAACCTCAATTGAAGCGGTAATATAGCATGCTTTGAGTTGAAGGTTTGAAACTATAAAGATATAACATATGGACTTAACCCCAATTAATACTGCAAAGATATAACATATGAATTTGTGTGTGAACCTCACATGTATTCTGAGTAAATTGATTGAGACATGTATTCTAAGTAAATTGGTTGAGGTTGGTTGATTGACCGAACCTCGTAAAATTTGTCTCATTTGGTGTGTTTCTCGTTTGTCTTCTTGCTCATGGTCTTTCGAAATTTGCTTTGCTAGTTTACGCATTATACCTACTTATTTCGGCCCTAACAAATTGGGTGTAAAGATATGACGCCTAATTCGACCCCCAATAACTAGCTCATTAGGGAAGATTTGTCCAAGTCCATATAAGGACCCAATAACTAGCTCATGAGGGAAGATTGTCCCCATCCCTCTACCAATGTGAGACTTCTTAACCGAAACCACTAGTAATAAATCCTGACTCTGCCACTGATTTTAACTATGGAGTTTTGATATTCTGATGTCTGATTATGCAGTTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTGGTACTTGTTTATTTATACATCTTCGCTATGAAAGAGAAAAACATATATTTCAAAGGTCCATGCAGGATCAAGAATTGACTTTGATTATTCTTTCAATGTTAGGGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTC</genome_strand>
        <mrna_strand>AGAAGCTTACAATCTAAATG.................................................................................................................GGGATTTGCAGAAATGCCAAGACTGAAGAAAAGCCACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTGTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTG......................................................................................................GGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAAGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303194" ref_strand="+" ref_description="SGN-E303194 [cLEX-5-N20]">
      <seq>agaagcttacaatctaaatggggatttgcagaaatgtcaagactgaagaaaagcaacttcaaaagaaggggggaactagagcagctctttttgtctatgttgtggcgggaatcgataccatggcttttatttcaaagggtgtgagcctggtgacttacttctctgggtatatgaacttcagcttaacgaaatctgccaacactgtgacaaacttcatgggaacagcgtttttgctctcattatttggagcgtttctctcagatacttacttctccagattcaagacttgtgtcctatttagcatcattcaagttttgggatttgcactgctaggagttcaagcgcatttcagtcaactgagaccatttccctgcaaggatgtacctttaagccaaaacgatcaatgtgaatctgcagatgcaggccaattggcaatcttgtatggaggtgtttatctggtagcacttggaaacagtggagtcaaagcggctttgccatcattaggtgctgatcaatttgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="52732" stop="54780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53032" g_stop="53051" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53052" i_stop="53164" i_length="113">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53165" g_stop="53243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="99" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53244" i_stop="53952" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53953" g_stop="54170" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="317" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54171" i_stop="54272" i_length="102">
            <donor d_prob="0.002" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54273" g_stop="54480" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="525" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E303194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53032" e_stop="53051"/>
          <exon e_start="53165" e_stop="53243"/>
          <exon e_start="53953" e_stop="54170"/>
          <exon e_start="54273" e_stop="54480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTTACAATCTAAATGGTAAGTTAAATTAGCAATTATATGTTTTTAGAATATGAAGTATTAGTATTTTTTCCAAAGTTAAGAAATGTTTGGCTAAAATATAAATAGTTTTATTTTGATAATTGTTGCAGGGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATGGTAAGCATATTTCAAGTATATAATTGTTTAACTCTCTTATGCTTATATATGGAATACTACGGGCGGAGCCACCTTAGACGAAGGATGATCTGGTGAGATTAAATGTCAGGGGAACTTTTATATTGTAGTGGTCAGTTTTGAAACTGTAAAGATATAGCACATGGGTTTAACTTAACCTCAATTGAAGCGGTAATATAGCATGCTTTGAGTTGAAGGTTTGAAACTATAAAGATATAACATATGGACTTAACCCCAATTAATACTGCAAAGATATAACATATGAATTTGTGTGTGAACCTCACATGTATTCTGAGTAAATTGATTGAGACATGTATTCTAAGTAAATTGGTTGAGGTTGGTTGATTGACCGAACCTCGTAAAATTTGTCTCATTTGGTGTGTTTCTCGTTTGTCTTCTTGCTCATGGTCTTTCGAAATTTGCTTTGCTAGTTTACGCATTATACCTACTTATTTCGGCCCTAACAAATTGGGTGTAAAGATATGACGCCTAATTCGACCCCCAATAACTAGCTCATTAGGGAAGATTTGTCCAAGTCCATATAAGGACCCAATAACTAGCTCATGAGGGAAGATTGTCCCCATCCCTCTACCAATGTGAGACTTCTTAACCGAAACCACTAGTAATAAATCCTGACTCTGCCACTGATTTTAACTATGGAGTTTTGATATTCTGATGTCTGATTATGCAGTTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTGGTACTTGTTTATTTATACATCTTCGCTATGAAAGAGAAAAACATATATTTCAAAGGTCCATGCAGGATCAAGAATTGACTTTGATTATTCTTTCAATGTTAGGGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAA</genome_strand>
        <mrna_strand>AGAAGCTTACAATCTAAATG.................................................................................................................GGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTG......................................................................................................GGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305063" ref_strand="+" ref_description="SGN-E305063 [cLEX-10-J6]">
      <seq>aatgtgaatctgcagatgcaggccaattggcaatcttgtatggaggtgtttatctggtagcacttggaaacagtggagtcaaagcggctttgccatcattaggtgctgatcaatttgatgaaaagggtcccaaaggggctgctaagctatcaagttacttcaattggctactgttcttcatcaccatcggagccatgcttggagttacattgtttgtttggataggtgacaatcagggatgggattggtcatttggtatctgttctgtagcaattggtttgtcaaccctactcttgaccatgggaaaacagttttacagaaacaatgttcctaaaggtagccctctgatgcgtatttcgcaggttcttgttgcagcttttagaaacagaaatctcccactaccacaaaacaaagaagatttacatcagatcagaagtgaagaggctgaaaatggaatagagattattcaaaggactgatcaattcaaatgcttggacagggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="54058" stop="55247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54358" g_stop="54844" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54845" i_stop="54930" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54931" g_stop="54947" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="504" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E305063" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54358" e_stop="54844"/>
          <exon e_start="54931" e_stop="54947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCACCATCGGAGCCATGCTTGGAGTTACATTGTTTGTTTGGATAGGTGACAATCAGGGATGGGATTGGTCATTTGGTATCTGTTCTGTAGCAATTGGTTTGTCAACCCTACTCTTGACCATGGGAAAACAGTTTTACAGAAACAATGTTCCTAAAGGTAGCCCTCTGATGCGTATTTCGCAGGTTCTTGTTGCAGCTTTTAGAAACAGAAATCTCCCACTACCACAAAACAATGAAGATTTACATCAGATCAGAAGTGAAGAGGCTGAAAATGGAATAGAGATTATTCAAAGGACTGATCAATTCAAGTATTTAATAACACCTTTTTTTCGTTTCAGTTTCCTGTTGACATGTACGTTGCGTTGCTTAACCAAATTTTCCACAATATTTACAGATGCTTGGACAGGGCAG</genome_strand>
        <mrna_strand>AATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCACCATCGGAGCCATGCTTGGAGTTACATTGTTTGTTTGGATAGGTGACAATCAGGGATGGGATTGGTCATTTGGTATCTGTTCTGTAGCAATTGGTTTGTCAACCCTACTCTTGACCATGGGAAAACAGTTTTACAGAAACAATGTTCCTAAAGGTAGCCCTCTGATGCGTATTTCGCAGGTTCTTGTTGCAGCTTTTAGAAACAGAAATCTCCCACTACCACAAAACAAAGAAGATTTACATCAGATCAGAAGTGAAGAGGCTGAAAATGGAATAGAGATTATTCAAAGGACTGATCAATTCAA......................................................................................ATGCTTGGACAGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306441" ref_strand="+" ref_description="SGN-E306441 [cLEX-13-C5]">
      <seq>gcctttgtactatctcacaagttgaagaaacaaagattgtagtaagaatgctcccaattatactgagcactgtcttcatgaacacttgcatggctcaactccagactttcactatccaacaaagcatgacaatgaacagaaaaatccgaaactttgaaatcccagggccttccatacctgtaattcctcaagtattccaactcatcatgatcccagtctatgatcgtatctttgttccgatagcaagaaagttcacagggatcccttctggtattcgacaactgcaacgtataggtgttggactagtattttcagtagtatctatggcagtggctgcagttgtagaaagtcacagaaaatcagttgccattgagcataacatggttgactcatccagtcagatacctatgagtgtgttctggcttggatttcaatttgtaatattttccatagctgaagtacttacattgatagggctgttggatttcttctacgcagagagcacatcaggcatgaaatcactgagtatggcgaatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="54702" stop="55842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55002" g_stop="55542" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E306441" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55002" e_stop="55542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTACTATCTCACAAGTTGAAGAAACAAAGATTGTAGTAAGAATGCTCCCAATTATACTGAGCACTGTCTTCATGAACACTTGCATGGCTCAACTCCAGACTTTCACTATCCAACAAAGCATGACAATGAACAGAAAAATCCGAAACTTTGAAATCCCAGGGCCTTCCATACCTGTAATTCCTCAAGTATTCCAACTCATCATGATCCCAGTCTATGATCGTATCTTTGTTCCGATAGCAAGAAAGTTCACAGGGATCCCTTCTGGTATTCGACAACTGCAACGTATAGGTGTTGGACTAGTATTTTCAGTAGTATCTATGGCAGTGGCTGCAGTTGTAGAAAGTCACAGAAAATCAGTTGCCATTGAGCATAACATGGTTGACTCATCCAGTCAGATACCTATGAGTGTGTTCTGGCTTGGATTTCAATTTGTAATATTTTCCATAGCTGAAGTACTTACATTGATAGGGCTGTTGGATTTCTTCTACGCAGAGAGCACATCAGGCATGAAATCACTGAGTATGGCGATTACATG</genome_strand>
        <mrna_strand>GCCTTTGTACTATCTCACAAGTTGAAGAAACAAAGATTGTAGTAAGAATGCTCCCAATTATACTGAGCACTGTCTTCATGAACACTTGCATGGCTCAACTCCAGACTTTCACTATCCAACAAAGCATGACAATGAACAGAAAAATCCGAAACTTTGAAATCCCAGGGCCTTCCATACCTGTAATTCCTCAAGTATTCCAACTCATCATGATCCCAGTCTATGATCGTATCTTTGTTCCGATAGCAAGAAAGTTCACAGGGATCCCTTCTGGTATTCGACAACTGCAACGTATAGGTGTTGGACTAGTATTTTCAGTAGTATCTATGGCAGTGGCTGCAGTTGTAGAAAGTCACAGAAAATCAGTTGCCATTGAGCATAACATGGTTGACTCATCCAGTCAGATACCTATGAGTGTGTTCTGGCTTGGATTTCAATTTGTAATATTTTCCATAGCTGAAGTACTTACATTGATAGGGCTGTTGGATTTCTTCTACGCAGAGAGCACATCAGGCATGAAATCACTGAGTATGGCGAATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709744" ref_strand="+" ref_description="SGN-E709744 [FA53AA04]">
      <seq>cgtataactcagagactgacaatgatccatatcctttcttcttcttctactactactactactacttttctcatactctttttggtccttttcactctgtctccatttccagtttcgattgccacttcatctaccatacctttcaacatctcccacttcctttatccaagaatcaactacgaggaatatccccaatcttcacctaatcctccttcatttctagaggacgtgttaaaggggattgctgagcgagagaaatgggatttgcaggacttgagagtttccaagttggatgtgaagaaatcaaagtttgggactttgaggaggtatgagtttcgggtcagaattgggaagacggaattcgtattcatgatggcagatgaagtatctcagtggaaaggacttcactttcctaacaagaatgaatccgacttcgagtctttggtcaaagagattggttccaaagccactcttgatgtcctaaaaatccaagggccattcgaattatatgctactggagatgattacctgtccttgaccttacccctgaactcttcttatactgtgttgaaaaagatccttgttgatgagggcatcacagtagaagttaaaggtgctgatgaaatatcaatgttcaacatctctgatttgcttaaattactaaatggaagcatgttgaccaagtcaggaagcggtcaatttagatatatgttgcaatcgtcctgcataccactacttcccatacatgtaaagggacctgcttcagtacttgcctatatcaccaaaaaccccgacttaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="63377" stop="60320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63078" g_stop="62858" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62519" g_stop="62199" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="546" r_length="321" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60877" g_stop="60620" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="804" r_length="258" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E709744" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63078" e_stop="62858"/>
          <exon e_start="62519" e_stop="62199"/>
          <exon e_start="60877" e_stop="60620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGA-AACTCAGAGATTGACAATGATCCATATCCTTTCTTCTTCTTC---TACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAGGTTTTGTTCAATTTCCTAACTGGGTTTTTCCTAATTACTGTTATTGTTCTGATTCTCTAATGGGTTTTGCCTATTTTCTGTTATTTGCTCTGTTTCTCTAATGAGGTTGGCCTAATTACTGTTATTGGTTCTGATTCTCTGATTGGGTTTGCCTAATTCCTGTTATTTGTGCTGTTTCTCTAACGGGGTTTGCCTAATTGTTGTTAATTTTTCTGATTCTTCAATGAGTTTTGCTTTAATTACTGCTATTTGTTGTGTTTCTCTAATGGGTTTTGCTTAAAGTTCTGTTTTTTGTTCTGTTTCTCTTATTTATGGTTCTATTTGTTTATGTTGTCCAGGACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCCGTATGTTCCCCAAATCCTTTAATATTGCTTTTGTTTGTTGCAGTACATTTTGCAAGTTACACCAGATGTTTTTTCTGTAGATGGTCTTTGCTTCCAATCTAATTTTGTTTACTGAGCTGCATTTAAGTCTTGGATTTGGATATAATTGGCTGCATACACCTGGAAGGAGTTCTGTTGCATCCACATCAGCTCGTGTTTTATGCATGTAGTTGAAATTTTCTAAATACATATGCACAACAAGGCAGCATCCGTTGTCACAGAGAGTAGTGTGTAGCAGCTTTATCTATTTAGTCGATTTTTTTTTAAATGTATACATGCACCAAGGTTTCACCCGTTGTCATAAAGGAGTAGCGGGTAGCACCCAGTTCAGTTGTAGTTCTATGTGTGTAATATAAAAATGTGAACTTGCACCCACTTTTAAGAAAGGAGTGGTGGTACTTAACACTCGCTGACTTGAAATCACAGATCCACCTCAGATTGGTTGCAAATATTTACATTGTATTGTAATTCAACTGTGGAACTATCCTGAAGATGTAATATTTGGTTGTTGATCCTTATGTTGGAGTGCCTGGTGAAATAGACAGTTAAATGAAGCAAATCTTCGCCCATGACACTAGTCCCCACCAGGCTTATTTTCTGCATTTGTTAAATCAAATCCACCATGTAGTTTTTCAAGACTCTTTGCGTATCAAGGTATTATAGGCCAAAACTTCGGAAGTACTTAAGTTCCGCATATTTATGGAGTGCTAACCCACTTGATGTTTCAGTTGACTTATTTGATCTCTAGAAAGGAAGCTGCAATTATATCGGCAGAAGTTGTTATATGCTGATGCAGTTTACTCCAAAATAGAGCTGCTGCATATGCAAGGAACTTCTTTAGGTGCAGCTTTTCTAGAACTTCGACTCCTCCACAGGGAGAGAACATCAAATTAGTTGTCGCATTGTATATTTGTTCAATGCATTGCCTGTGTATTAGGGAGAAAATGTTAAACTAGCAATTATGTTCTCCATGGAGGATCTTCTATGTGTTATGTTTCTCTGTGCATATGAATATTATCATGTTGTGAAAATCTTTTTCTCTGTGCCTGGACATGTTGACATATGTAGCCTGTTTGGATGTTGATGTTTGACATATTTTCTTTAAATGGATACAGATTTGTGCTTTGATCTCTTCTTGCTAGTTTGCAGCTAGTTGCTTTAATGTGATCCGTCATGAGTTGATGCATTATGTGTTATACTCTAGTACTGGAAGTGAGATTTTACTAATCATTATGTGTTTTCGTGGTAGGCTAACACATTTTGTTAATTACCTTTTTAACAGCTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATATAGATATATGTTGCAATCGTCCTGCATACCACTACTTCCCGTACATGTAAAGGGACCTGCTTCAGTTCTTGCCTATATCACCAGAAACCCTGACTTAAGAATT</genome_strand>
        <mrna_strand>CGTATAACTCAGAGACTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTGTCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAG..................................................................................................................................................................................................................................................................................................................................................GACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGACTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTCCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTTCTTATACTGTGTTGAAAAAGATCCTTGTTGATGAGGGCATCACAGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTACTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATTTAGATATATGTTGCAATCGTCCTGCATACCACTACTTCCCATACATGTAAAGGGACCTGCTTCAGTACTTGCCTATATCACCAAAAACCCCGACTTAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266912" ref_strand="+" ref_description="SGN-E266912 [cLEI-7-A14]">
      <seq>cgagagaaatgggatttgcaggacttgagagtttccaagttggatgtgaagaaatcaaagtttgggactttgaggaggtatgagtttcgggtcagaattgggaagacggaattcgtattcatgatggcagatgaagtatctcagtggaaaggccttcactttcctaacaagaatgaatccgacttcgagtctttggtcaaagagattggttccaaagccactcttgatgtcctaaaaatccaagggccattcgaattatatgctactggagatgattacctgtccttgaccttacccctgaactcttcttatactgggttgaaaaagatccttgttgatgagggcatcactgtagaagttaaaggtgctgatgaaatatcaatgttcaacatctctgatttgcttaaattagtaaatggaagcatgttgaccaagtcaggaagcggtcaatttagatatatgttgcaatcgtcctgcataccactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="62795" stop="60387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62495" g_stop="62199" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60877" g_stop="60687" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="488" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E266912" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62495" e_stop="62199"/>
          <exon e_start="60877" e_stop="60687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCCGTATGTTCCCCAAATCCTTTAATATTGCTTTTGTTTGTTGCAGTACATTTTGCAAGTTACACCAGATGTTTTTTCTGTAGATGGTCTTTGCTTCCAATCTAATTTTGTTTACTGAGCTGCATTTAAGTCTTGGATTTGGATATAATTGGCTGCATACACCTGGAAGGAGTTCTGTTGCATCCACATCAGCTCGTGTTTTATGCATGTAGTTGAAATTTTCTAAATACATATGCACAACAAGGCAGCATCCGTTGTCACAGAGAGTAGTGTGTAGCAGCTTTATCTATTTAGTCGATTTTTTTTTAAATGTATACATGCACCAAGGTTTCACCCGTTGTCATAAAGGAGTAGCGGGTAGCACCCAGTTCAGTTGTAGTTCTATGTGTGTAATATAAAAATGTGAACTTGCACCCACTTTTAAGAAAGGAGTGGTGGTACTTAACACTCGCTGACTTGAAATCACAGATCCACCTCAGATTGGTTGCAAATATTTACATTGTATTGTAATTCAACTGTGGAACTATCCTGAAGATGTAATATTTGGTTGTTGATCCTTATGTTGGAGTGCCTGGTGAAATAGACAGTTAAATGAAGCAAATCTTCGCCCATGACACTAGTCCCCACCAGGCTTATTTTCTGCATTTGTTAAATCAAATCCACCATGTAGTTTTTCAAGACTCTTTGCGTATCAAGGTATTATAGGCCAAAACTTCGGAAGTACTTAAGTTCCGCATATTTATGGAGTGCTAACCCACTTGATGTTTCAGTTGACTTATTTGATCTCTAGAAAGGAAGCTGCAATTATATCGGCAGAAGTTGTTATATGCTGATGCAGTTTACTCCAAAATAGAGCTGCTGCATATGCAAGGAACTTCTTTAGGTGCAGCTTTTCTAGAACTTCGACTCCTCCACAGGGAGAGAACATCAAATTAGTTGTCGCATTGTATATTTGTTCAATGCATTGCCTGTGTATTAGGGAGAAAATGTTAAACTAGCAATTATGTTCTCCATGGAGGATCTTCTATGTGTTATGTTTCTCTGTGCATATGAATATTATCATGTTGTGAAAATCTTTTTCTCTGTGCCTGGACATGTTGACATATGTAGCCTGTTTGGATGTTGATGTTTGACATATTTTCTTTAAATGGATACAGATTTGTGCTTTGATCTCTTCTTGCTAGTTTGCAGCTAGTTGCTTTAATGTGATCCGTCATGAGTTGATGCATTATGTGTTATACTCTAGTACTGGAAGTGAGATTTTACTAATCATTATGTGTTTTCGTGGTAGGCTAACACATTTTGTTAATTACCTTTTTAACAGCTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATATAGATATATGTTGCAATCGTCCTGCATACCACTACT</genome_strand>
        <mrna_strand>CGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTCCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATTTAGATATATGTTGCAATCGTCCTGCATACCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325627" ref_strand="+" ref_description="SGN-E325627 [cTOC-15-N22]">
      <seq>agagactgacaatgatccatatcctttcttcttcttctactactactactacttttctcatactctttctggtccttttcactctatctccatttccagtttcgattgccacttcatctaccatacctttcaacatctcccacttcctttatccaagaatcaactacgaggaatatccccaatcttcacctaatcctccttcatttctagaggacgtgttaaaggggattgctgagcgagagaaatgggatttgcaggacttgagagtttccaagttggatgtgaagaaatcaaagtttgggactttgaggaggtatgagtttcgggtcagaattgggaagacggaattcgtattcatgatggcagatgaagtatctcagtggaaaggccttcactttcctaacaagaatgaatccgacttcgagtctttggtcaaagagattggttccaaagccactcttgatgtcctaaaaatccaagggccattcgaattatatgctactggagatgattacctgtccttgaccttacccctgaactcttcttatactgggttgaaaaagatccttgttgatgaaggcatcactgtagaagttaaaggtgctgatgaaatatcaatgttcaacatctctgatttgcttaaattagtaaatggaagcatgttgaccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="63369" stop="60439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63069" g_stop="62858" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62519" g_stop="62199" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="533" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60877" g_stop="60739" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="672" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E325627" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63069" e_stop="62858"/>
          <exon e_start="62519" e_stop="62199"/>
          <exon e_start="60877" e_stop="60739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAGGTTTTGTTCAATTTCCTAACTGGGTTTTTCCTAATTACTGTTATTGTTCTGATTCTCTAATGGGTTTTGCCTATTTTCTGTTATTTGCTCTGTTTCTCTAATGAGGTTGGCCTAATTACTGTTATTGGTTCTGATTCTCTGATTGGGTTTGCCTAATTCCTGTTATTTGTGCTGTTTCTCTAACGGGGTTTGCCTAATTGTTGTTAATTTTTCTGATTCTTCAATGAGTTTTGCTTTAATTACTGCTATTTGTTGTGTTTCTCTAATGGGTTTTGCTTAAAGTTCTGTTTTTTGTTCTGTTTCTCTTATTTATGGTTCTATTTGTTTATGTTGTCCAGGACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCCGTATGTTCCCCAAATCCTTTAATATTGCTTTTGTTTGTTGCAGTACATTTTGCAAGTTACACCAGATGTTTTTTCTGTAGATGGTCTTTGCTTCCAATCTAATTTTGTTTACTGAGCTGCATTTAAGTCTTGGATTTGGATATAATTGGCTGCATACACCTGGAAGGAGTTCTGTTGCATCCACATCAGCTCGTGTTTTATGCATGTAGTTGAAATTTTCTAAATACATATGCACAACAAGGCAGCATCCGTTGTCACAGAGAGTAGTGTGTAGCAGCTTTATCTATTTAGTCGATTTTTTTTTAAATGTATACATGCACCAAGGTTTCACCCGTTGTCATAAAGGAGTAGCGGGTAGCACCCAGTTCAGTTGTAGTTCTATGTGTGTAATATAAAAATGTGAACTTGCACCCACTTTTAAGAAAGGAGTGGTGGTACTTAACACTCGCTGACTTGAAATCACAGATCCACCTCAGATTGGTTGCAAATATTTACATTGTATTGTAATTCAACTGTGGAACTATCCTGAAGATGTAATATTTGGTTGTTGATCCTTATGTTGGAGTGCCTGGTGAAATAGACAGTTAAATGAAGCAAATCTTCGCCCATGACACTAGTCCCCACCAGGCTTATTTTCTGCATTTGTTAAATCAAATCCACCATGTAGTTTTTCAAGACTCTTTGCGTATCAAGGTATTATAGGCCAAAACTTCGGAAGTACTTAAGTTCCGCATATTTATGGAGTGCTAACCCACTTGATGTTTCAGTTGACTTATTTGATCTCTAGAAAGGAAGCTGCAATTATATCGGCAGAAGTTGTTATATGCTGATGCAGTTTACTCCAAAATAGAGCTGCTGCATATGCAAGGAACTTCTTTAGGTGCAGCTTTTCTAGAACTTCGACTCCTCCACAGGGAGAGAACATCAAATTAGTTGTCGCATTGTATATTTGTTCAATGCATTGCCTGTGTATTAGGGAGAAAATGTTAAACTAGCAATTATGTTCTCCATGGAGGATCTTCTATGTGTTATGTTTCTCTGTGCATATGAATATTATCATGTTGTGAAAATCTTTTTCTCTGTGCCTGGACATGTTGACATATGTAGCCTGTTTGGATGTTGATGTTTGACATATTTTCTTTAAATGGATACAGATTTGTGCTTTGATCTCTTCTTGCTAGTTTGCAGCTAGTTGCTTTAATGTGATCCGTCATGAGTTGATGCATTATGTGTTATACTCTAGTACTGGAAGTGAGATTTTACTAATCATTATGTGTTTTCGTGGTAGGCTAACACATTTTGTTAATTACCTTTTTAACAGCTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGT</genome_strand>
        <mrna_strand>AGAGACTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTCTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAG..................................................................................................................................................................................................................................................................................................................................................GACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTCCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAAGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328060" ref_strand="+" ref_description="SGN-E328060 [cTOC-22-M20]">
      <seq>aaagactgacaatgatccatatccttgcttcttcttcgactactactactacttttctcatactctttctggaccttttcactctatctccatttccagtttctcattgccacttcatctaccatacctttcaacatctcccacttcctttatccaataatcaactaccacgaatatccccaatcttcacctaatcctccttcatttctacaggacgtgttaaatgggattgctgagcgagagaaatgagatttgcaggacttgagagtatccaagttggatgtgaacaaatcaaagtttgggactttgaggaggtatgagattctggtcagaattgggaagaccgaattcatattcatgatggcagatgaagtatctcagagaaaacgccttcactttcctaacaagaatgaatccgacttcgagtctttggtcagagagattggctccaaagccactcttgatgtcctaataatccagaggacattcgaattatatgctactggagatgattacctgtccttgaccttacccctgaactcttcttatactgagctgactgagatccttgttgatgagggcatcactgtataagtatcaggtgctgatgaaatatcaatgttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="63369" stop="60483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63069" g_stop="62858" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62519" g_stop="62199" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="534" r_length="321" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60877" g_stop="60783" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="629" r_length="95" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E328060" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63069" e_stop="62858"/>
          <exon e_start="62519" e_stop="62199"/>
          <exon e_start="60877" e_stop="60783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTC-GATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAGGTTTTGTTCAATTTCCTAACTGGGTTTTTCCTAATTACTGTTATTGTTCTGATTCTCTAATGGGTTTTGCCTATTTTCTGTTATTTGCTCTGTTTCTCTAATGAGGTTGGCCTAATTACTGTTATTGGTTCTGATTCTCTGATTGGGTTTGCCTAATTCCTGTTATTTGTGCTGTTTCTCTAACGGGGTTTGCCTAATTGTTGTTAATTTTTCTGATTCTTCAATGAGTTTTGCTTTAATTACTGCTATTTGTTGTGTTTCTCTAATGGGTTTTGCTTAAAGTTCTGTTTTTTGTTCTGTTTCTCTTATTTATGGTTCTATTTGTTTATGTTGTCCAGGACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCCGTATGTTCCCCAAATCCTTTAATATTGCTTTTGTTTGTTGCAGTACATTTTGCAAGTTACACCAGATGTTTTTTCTGTAGATGGTCTTTGCTTCCAATCTAATTTTGTTTACTGAGCTGCATTTAAGTCTTGGATTTGGATATAATTGGCTGCATACACCTGGAAGGAGTTCTGTTGCATCCACATCAGCTCGTGTTTTATGCATGTAGTTGAAATTTTCTAAATACATATGCACAACAAGGCAGCATCCGTTGTCACAGAGAGTAGTGTGTAGCAGCTTTATCTATTTAGTCGATTTTTTTTTAAATGTATACATGCACCAAGGTTTCACCCGTTGTCATAAAGGAGTAGCGGGTAGCACCCAGTTCAGTTGTAGTTCTATGTGTGTAATATAAAAATGTGAACTTGCACCCACTTTTAAGAAAGGAGTGGTGGTACTTAACACTCGCTGACTTGAAATCACAGATCCACCTCAGATTGGTTGCAAATATTTACATTGTATTGTAATTCAACTGTGGAACTATCCTGAAGATGTAATATTTGGTTGTTGATCCTTATGTTGGAGTGCCTGGTGAAATAGACAGTTAAATGAAGCAAATCTTCGCCCATGACACTAGTCCCCACCAGGCTTATTTTCTGCATTTGTTAAATCAAATCCACCATGTAGTTTTTCAAGACTCTTTGCGTATCAAGGTATTATAGGCCAAAACTTCGGAAGTACTTAAGTTCCGCATATTTATGGAGTGCTAACCCACTTGATGTTTCAGTTGACTTATTTGATCTCTAGAAAGGAAGCTGCAATTATATCGGCAGAAGTTGTTATATGCTGATGCAGTTTACTCCAAAATAGAGCTGCTGCATATGCAAGGAACTTCTTTAGGTGCAGCTTTTCTAGAACTTCGACTCCTCCACAGGGAGAGAACATCAAATTAGTTGTCGCATTGTATATTTGTTCAATGCATTGCCTGTGTATTAGGGAGAAAATGTTAAACTAGCAATTATGTTCTCCATGGAGGATCTTCTATGTGTTATGTTTCTCTGTGCATATGAATATTATCATGTTGTGAAAATCTTTTTCTCTGTGCCTGGACATGTTGACATATGTAGCCTGTTTGGATGTTGATGTTTGACATATTTTCTTTAAATGGATACAGATTTGTGCTTTGATCTCTTCTTGCTAGTTTGCAGCTAGTTGCTTTAATGTGATCCGTCATGAGTTGATGCATTATGTGTTATACTCTAGTACTGGAAGTGAGATTTTACTAATCATTATGTGTTTTCGTGGTAGGCTAACACATTTTGTTAATTACCTTTTTAACAGCTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACAT</genome_strand>
        <mrna_strand>AAAGACTGACAATGATCCATATCCTTGCTTCTTCTTCGACTACTACTACTACTTTTCTCATACTCTTTCTGGACCTTTTCACTCTATCTCCATTTCCAGTTTCTCATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAATAATCAACTACCACGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTACAG..................................................................................................................................................................................................................................................................................................................................................GACGTGTTAAATGGGATTGCTGAGCGAGAGAAATGAGATTTGCAGGACTTGAGAGTATCCAAGTTGGATGTGAACAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGATTCTGGTCAGAATTGGGAAGACCGAATTCATATTCATGATGGCAGATGAAGTATCTCAGAGAAAACGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAGAGAGATTGGCTCCAAAGCCACTCTTGATGTCCTAATAATCCAGAGGACATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTTCTTATACTGAGCTGACTGAGATCCTTGTTGATGAGGGCATCACTGTATAAGTATCAGGTGCTGATGAAATATCAATGTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367064" ref_strand="+" ref_description="SGN-E367064 [cLPT-5-M17]">
      <seq>acaatgatccatatcctttcttcttctactactacaagtacttttctcatactctttttggtccttttcactctgtctccatttccagtttcgattgccacttcatctaccgtacctttcaacatctcccacttcctttatccaagaatcaactacgaggaatatccccaatcttcacctaatcctccttcatttctagaggacgtgttaaagggaattgctgagcgagagaaatgggatttgcagcacttgagagtttccaagttggatgtgaagaaatcaaagtttgggactttgaggaggtatgagtttcgggtcagaattgggaagacggaattggtattcatgatggcagatgaagtatctcagtggaaaggccttcactttcctaacaagaatgaatccaacttcgagtctttggtcaaagagattggttccaaagccactcttgatgtcctaaaaatccaagggccattcgaattatatgctactggagatgattacctgtccttgaccttacccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="63353" stop="61897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63061" g_stop="62858" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62519" g_stop="62199" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="522" r_length="321" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E367064" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63061" e_stop="62858"/>
          <exon e_start="62519" e_stop="62199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAGGTTTTGTTCAATTTCCTAACTGGGTTTTTCCTAATTACTGTTATTGTTCTGATTCTCTAATGGGTTTTGCCTATTTTCTGTTATTTGCTCTGTTTCTCTAATGAGGTTGGCCTAATTACTGTTATTGGTTCTGATTCTCTGATTGGGTTTGCCTAATTCCTGTTATTTGTGCTGTTTCTCTAACGGGGTTTGCCTAATTGTTGTTAATTTTTCTGATTCTTCAATGAGTTTTGCTTTAATTACTGCTATTTGTTGTGTTTCTCTAATGGGTTTTGCTTAAAGTTCTGTTTTTTGTTCTGTTTCTCTTATTTATGGTTCTATTTGTTTATGTTGTCCAGGACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC</genome_strand>
        <mrna_strand>ACAATGATCCATATCC--T-TTCTTCTTCTACTACTACAAGTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTGTCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCGTACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAG..................................................................................................................................................................................................................................................................................................................................................GACGTGTTAAAGGGAATTGCTGAGCGAGAGAAATGGGATTTGCAGCACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTGGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCAACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTCCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701292" ref_strand="+" ref_description="SGN-E701292 [FA15CC06]">
      <seq>cacacttagtgatatttaaagcaccaccaatccttcagcatatttttggttgtagtgctggagacgtcttcattaaaagagttgttgcattagctggggattatattgaagtgcgtgagggtaaactgtttttgaatggtgttgctcaagatgaagatttcattttagagcctattgcctatgaaatggaaccagtgcttgttcctgaaggctgtgtgttcgtgatgggggacaatcgcaataatagctatgattctcacaactggggtccacttcccgttgcaaacattgtcggtaggtcagtattcagatattggcccccatccagggtgtcggacaccctgcatggatcagtaatggagaagagagtagttgcagtttcttgaccctgtctaaagatggaggtgttttactgacttctttcatctctttattcttttactgatcagtctctgccttctggctcattggatcagctgtataatctttcccatcccagctgccgttgttcgatccacaatttgaacaacttggaggatggattatcttaatccgcctgtgtgattgtttttctcaagcggccctatattgggtttctgcaattttatgtagtgcaaagtctcagagataaagctgatcattggaattagcaaactcagttgtcatgaagaactggaacattttccctttctcgtaaaccgtggagtggagaccagactagggagacacgatggtgtatccaacaaagtttcagctgtaaatcgtgacacagtattctgaggctgaacatgtttaatatttgcttgtattcctgctgaatgtagtgaattatgaagtatggtctctatataacaattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="65655" stop="63574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65355" g_stop="65318" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65229" g_stop="65158" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="110" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65074" g_stop="64988" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="197" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64900" g_stop="64833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="265" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64467" g_stop="63874" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="861" r_length="596" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E701292" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65355" e_stop="65318"/>
          <exon e_start="65229" e_stop="65158"/>
          <exon e_start="65074" e_stop="64988"/>
          <exon e_start="64900" e_stop="64833"/>
          <exon e_start="64467" e_stop="63874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACATAGTGATATTTAAAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAAGTAAGTTCTTCTTCTCTTACCATGTTTTGCAAGTAGCTGTGTCAAATGTGCGATATCTTATTCAAGGATTACACTTTATGCAGGTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTGGTAAAGCATATATTTTGTCTATATGCAAGGATGTGTATATGATGTGATCTCTTCAAAGATCTAATACACTGCTTTGTCATTTTATAGCTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTGGTGAGAGCATTGAAAGATCTAATTTATTTTTTAAATAGAGAAGTAACAATTCACTGCTGAGGAAGAGCTGCTGTAGTAATGTTCAACCTTGTCTTCTGCCTATGCCCTCCCCTGAAACCAAGCCTTCCATTAAATACATTTAAAACATTCGCTTGTTTGTGAGTGTGGTAGTGCCTTTGGGATCACTTGTCCATGGTGGGTTAGGAAGCTGAAACAATAAGAACCAAGAAGCAGTGGTATCTCATGTTCTCCACGGAAACCCTTCATAGTTGGAATTACAAAAAAGAACCCTTAAATCATTTGTGTTCTTGTTTGTTTATCTCTATGCAGAATTTTGATCTCATCTTTACTGTCTAATTTCTCAGGGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCT-AAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCATTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTTGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGTGGCCCTATATTGGGTTTTTGCAATTTTATGTAGTGCAAAGTCTCAGAGATAAAGCTGATCATTGGAATTAGCAAACTCAGTTGTCATGAAGAACTGGAACATTTTCCCTTTCTCCTTAACCGTGGAGTGGAGACCAGACTAGGGAGACACGATGGTGTATCCAACAAAGTTTCAGCTGTAAATCGCGAC-CAATATTCTGAGGCTGAACATGTTTAATATTTGCTTGTATTCCTGCTGAATGTAGTGAATTATGAAGTATGGTCTCTATATAACAATTTTCT</genome_strand>
        <mrna_strand>CACACTTAGTGATATTTAAAGCACCACCAATCCTTCAG........................................................................................CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAA...................................................................................GTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCCTATGAAATGGAACCAGTG.......................................................................................CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG.............................................................................................................................................................................................................................................................................................................................................................................GGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAAGATGGAGGTGTTTTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCAGTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTGGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGCGGCCCTATATTGGGTTTCTGCAATTTTATGTAGTGCAAAGTCTCAGAGATAAAGCTGATCATTGGAATTAGCAAACTCAGTTGTCATGAAGAACTGGAACATTTTCCCTTTCTCGTAAACCGTGGAGTGGAGACCAGACTAGGGAGACACGATGGTGTATCCAACAAAGTTTCAGCTGTAAATCGTGACACAGTATTCTGAGGCTGAACATGTTTAATATTTGCTTGTATTCCTGCTGAATGTAGTGAATTATGAAGTATGGTCTCTATATAACAATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310682" ref_strand="+" ref_description="SGN-E310682 [cLEZ-19-P20]">
      <seq>aactgtttttgaatggtgttgctcaagatgaagatttcattttagagcctattgcgtatgaaatggaaccagtgcttgttcctgaaggctgtgtgttcgtgatgggggacaatcgcaataatagctatgattctcacaactggggtccacttcccgttgcaaacattgtcggtaggtcagtattcagatattggcccccatccagggtgtcggacaccctgcatggatcagtaatggagaagagagtagttgcagtttcttgaccctgtctaagatggaggtgttctactgacttctttcatctctttattcttttactgatcattctctgccttctggctcattggatcagctgtataatctttcccatcccagctgccgttgttcgatccacaatttgaacaactttgaggatggattatcttaatccgcctgtgtgattgtttttctcaagcggccctatattgggtttttgcaattttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="65361" stop="63824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65061" g_stop="64988" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64900" g_stop="64833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="142" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64467" g_stop="64124" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="486" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E310682" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65061" e_stop="64988"/>
          <exon e_start="64900" e_stop="64833"/>
          <exon e_start="64467" e_stop="64124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTGGTAAAGCATATATTTTGTCTATATGCAAGGATGTGTATATGATGTGATCTCTTCAAAGATCTAATACACTGCTTTGTCATTTTATAGCTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTGGTGAGAGCATTGAAAGATCTAATTTATTTTTTAAATAGAGAAGTAACAATTCACTGCTGAGGAAGAGCTGCTGTAGTAATGTTCAACCTTGTCTTCTGCCTATGCCCTCCCCTGAAACCAAGCCTTCCATTAAATACATTTAAAACATTCGCTTGTTTGTGAGTGTGGTAGTGCCTTTGGGATCACTTGTCCATGGTGGGTTAGGAAGCTGAAACAATAAGAACCAAGAAGCAGTGGTATCTCATGTTCTCCACGGAAACCCTTCATAGTTGGAATTACAAAAAAGAACCCTTAAATCATTTGTGTTCTTGTTTGTTTATCTCTATGCAGAATTTTGATCTCATCTTTACTGTCTAATTTCTCAGGGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCATTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTTGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGTGGCCCTATATTGGGTTTTTGCAATTTTATGT</genome_strand>
        <mrna_strand>AACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTG.......................................................................................CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG.............................................................................................................................................................................................................................................................................................................................................................................GGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCATTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTTGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGCGGCCCTATATTGGGTTTTTGCAATTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287581" ref_strand="+" ref_description="SGN-E287581 [cLES-9-H16]">
      <seq>aagcaccaccaatccttcagcatatttttggttgtagtgctggagacgtcttcattaaaagagttgttgcattagctggggattatattgaagtgcgtgagggtaaactgtttttgaatggtgttgctcaagatgaagatttcattttagagcctattgcgtatgaaatggaaccagtgcttgttcctgaaggctgtgtgttcgtgatgggggacaatcgcaataatagctatgattctcacaactggggtccacttcccgttgcaaacattgtcggtaggtcagtattcagatattggcccccatccagggtgtcggacaccctgcatggatcagtaatggagaagagagtagttgcagtttcttgaccctgtctaagatggaggtgttctactgacttctttcatctctttattcttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="65637" stop="63992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65337" g_stop="65318" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65229" g_stop="65158" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65074" g_stop="64988" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="179" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64900" g_stop="64833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="247" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64467" g_stop="64292" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="423" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E287581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65337" e_stop="65318"/>
          <exon e_start="65229" e_stop="65158"/>
          <exon e_start="65074" e_stop="64988"/>
          <exon e_start="64900" e_stop="64833"/>
          <exon e_start="64467" e_stop="64292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAAGTAAGTTCTTCTTCTCTTACCATGTTTTGCAAGTAGCTGTGTCAAATGTGCGATATCTTATTCAAGGATTACACTTTATGCAGGTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTGGTAAAGCATATATTTTGTCTATATGCAAGGATGTGTATATGATGTGATCTCTTCAAAGATCTAATACACTGCTTTGTCATTTTATAGCTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTGGTGAGAGCATTGAAAGATCTAATTTATTTTTTAAATAGAGAAGTAACAATTCACTGCTGAGGAAGAGCTGCTGTAGTAATGTTCAACCTTGTCTTCTGCCTATGCCCTCCCCTGAAACCAAGCCTTCCATTAAATACATTTAAAACATTCGCTTGTTTGTGAGTGTGGTAGTGCCTTTGGGATCACTTGTCCATGGTGGGTTAGGAAGCTGAAACAATAAGAACCAAGAAGCAGTGGTATCTCATGTTCTCCACGGAAACCCTTCATAGTTGGAATTACAAAAAAGAACCCTTAAATCATTTGTGTTCTTGTTTGTTTATCTCTATGCAGAATTTTGATCTCATCTTTACTGTCTAATTTCTCAGGGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTAC</genome_strand>
        <mrna_strand>AAGCACCACCAATCCTTCAG........................................................................................CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAA...................................................................................GTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTG.......................................................................................CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG.............................................................................................................................................................................................................................................................................................................................................................................GGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205396" ref_strand="+" ref_description="SGN-E205396 [cLEC-28-I7]">
      <seq>tcatctttggctgagccaagatcaattccatctgcttccatgtcccctactctggataagggtgaccgtataatggctgaaaaggtttcatatttttttcggcaacctgacatttcagacatagtgatatttaaagcaccaccaatccttcagcatatttttggttgtagtgctggacacgtcttcattaaaagagttgttgcattaactggggattatattgaagtgcgtgagggtaaactgtttttgaatggtgttgctcaagatgaagatttcattttagagcctattgcgtatgaaatggaaccagtgcttgttcctgaaggctgtgtgttcgtgatgggggacaatcgcaataatagctatgattctcacaactgtggtccacttcccgttgcaaacattgtcggtaggtcagcattcagatattggcccccatccagggtgtcggacaccctgcatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="66515" stop="64081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66215" g_stop="66132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66131" i_stop="65387" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65318" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="153" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65229" g_stop="65158" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="225" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65074" g_stop="64988" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="312" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64900" g_stop="64833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="380" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64467" g_stop="64381" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="467" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E205396" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66215" e_stop="66132"/>
          <exon e_start="65386" e_stop="65318"/>
          <exon e_start="65229" e_stop="65158"/>
          <exon e_start="65074" e_stop="64988"/>
          <exon e_start="64900" e_stop="64833"/>
          <exon e_start="64467" e_stop="64381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAGGTATATTTAATCCTCCCTTTTTTCTGAAGTTTGTTGATATAGCTTGAAGACGTAGAGATAATGGCAAGTAGCTTGATGAGTATATTACTGTTTTTCATTGGCAAATAACTGGCCTGAATATGTGATTGATGCTTACCATGATATTTGATGTCTTGAAAATCTAGTATTTTCCTATTCAGTTTTCAGAGTCTTACTAGAATTATTTGATCTGATGACACTTTTTAACTGAAATATGAAACACAGTCAATTGGTTGATTGAATATGTTATCCAGCCTGAGCCTAATTGCTTACTAGTTTATTTGGTCTATCAATGTTTTTGCAAAAACATATTTTCGTTTCCTTGCACCATAATAATTGTTTTAGACGGTTGATGTCTTCCTTCTCCATTTTTGTTGTCAATGATGTTGTTTGGACTTCAGAAATGTTGGATGAATGCCCATTGTATTATGACAAATTCAATCTTTTATTGAGCTGATTTCTTTAATTAAGAAGTCTGTCTTGCATCCAACTTTGTTGAGAGTACAAGTAGTGCTAAGCAATCAATTGTCCTTATTTAGGAAAGAAAGCTCATCATGCTTATGATTAGTTCTATCTTTATACCTTGATTCCATTCATGCAACATACGCGTTTACTGCAATTGTTAGTGAAACTTTGATTGACGTGTAGGGATTCTATACAATAAAGATTTTTTATGTCCTGATTGTTTACACTTCTTACTGATTATTATGCTTCCTGTTGCATTCAGGTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAAGTAAGTTCTTCTTCTCTTACCATGTTTTGCAAGTAGCTGTGTCAAATGTGCGATATCTTATTCAAGGATTACACTTTATGCAGGTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTGGTAAAGCATATATTTTGTCTATATGCAAGGATGTGTATATGATGTGATCTCTTCAAAGATCTAATACACTGCTTTGTCATTTTATAGCTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTGGTGAGAGCATTGAAAGATCTAATTTATTTTTTAAATAGAGAAGTAACAATTCACTGCTGAGGAAGAGCTGCTGTAGTAATGTTCAACCTTGTCTTCTGCCTATGCCCTCCCCTGAAACCAAGCCTTCCATTAAATACATTTAAAACATTCGCTTGTTTGTGAGTGTGGTAGTGCCTTTGGGATCACTTGTCCATGGTGGGTTAGGAAGCTGAAACAATAAGAACCAAGAAGCAGTGGTATCTCATGTTCTCCACGGAAACCCTTCATAGTTGGAATTACAAAAAAGAACCCTTAAATCATTTGTGTTCTTGTTTGTTTATCTCTATGCAGAATTTTGATCTCATCTTTACTGTCTAATTTCTCAGGGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATC</genome_strand>
        <mrna_strand>TCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG........................................................................................CATATTTTTGGTTGTAGTGCTGGACACGTCTTCATTAAAAGAGTTGTTGCATTAACTGGGGATTATATTGAA...................................................................................GTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTG.......................................................................................CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG.............................................................................................................................................................................................................................................................................................................................................................................TGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGCATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290589" ref_strand="+" ref_description="SGN-E290589 [cLES-20-L1]">
      <seq>ttttttcggcaacctgacatttcagacatagtgatatttaaagcaccaccaatccttcagcatatttttggttgtagtgctggagacgtcttcattaaaagagttgttgcattaactggggattatattgaagtgcgtgagggtaaactgtttatgaatggtgctgctcaagatgaagatttcattttagagcctattgcctatgacatggaaccagtgcttgttcctgaaggctgtgtgatcgtgatgggggacaatctcattaatagctatgattctcacaactggggtccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="65677" stop="64530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65377" g_stop="65318" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65229" g_stop="65158" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="132" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65074" g_stop="64988" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="219" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64900" g_stop="64833" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="287" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E290589" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65377" e_stop="65318"/>
          <exon e_start="65229" e_stop="65158"/>
          <exon e_start="65074" e_stop="64988"/>
          <exon e_start="64900" e_stop="64833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAAGTAAGTTCTTCTTCTCTTACCATGTTTTGCAAGTAGCTGTGTCAAATGTGCGATATCTTATTCAAGGATTACACTTTATGCAGGTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTGGTAAAGCATATATTTTGTCTATATGCAAGGATGTGTATATGATGTGATCTCTTCAAAGATCTAATACACTGCTTTGTCATTTTATAGCTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG</genome_strand>
        <mrna_strand>TTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG........................................................................................CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAACTGGGGATTATATTGAA...................................................................................GTGCGTGAGGGTAAACTGTTTATGAATGGTGCTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCCTATGACATGGAACCAGTG.......................................................................................CTTGTTCCTGAAGGCTGTGTGATCGTGATGGGGGACAATCTCATTAATAGCTATGATTCTCACAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206505" ref_strand="+" ref_description="SGN-E206505 [cLEC-23-L13]">
      <seq>ggatttcgccattgaaagcgtcttcgtttcttccatttcttcagggctcgaaatggcttccttgtaatgagcccagtattgggtcctcggggagttccgaggtggataatggtggaactgaaactaggtgtagtgaaagttctgttcggtcggagcctttgtccaatgaaatgaaggtttccaagagccgttgggtgtcaaagttgttgaacatctgttctgatgatgcaaaggctgcttttacagctttgagtgttagcataatgtttaagtcatctttggctgagccaagatcaattccatctgcttccatgtcccctactctggataagggtgaccgtataatggctgaaaaggtttcatatttttttcggcaacctgacatttcagacatagtgatatttaaagcaccaccaatccttcagcatatttttggttgtagtgctggagacgtcttcattaaaagagttgttgcattagctggggattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="66787" stop="64862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66487" g_stop="66132" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66131" i_stop="65387" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65318" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="425" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65229" g_stop="65162" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="493" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E206505" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66487" e_stop="66132"/>
          <exon e_start="65386" e_stop="65318"/>
          <exon e_start="65229" e_stop="65162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAGGTATATTTAATCCTCCCTTTTTTCTGAAGTTTGTTGATATAGCTTGAAGACGTAGAGATAATGGCAAGTAGCTTGATGAGTATATTACTGTTTTTCATTGGCAAATAACTGGCCTGAATATGTGATTGATGCTTACCATGATATTTGATGTCTTGAAAATCTAGTATTTTCCTATTCAGTTTTCAGAGTCTTACTAGAATTATTTGATCTGATGACACTTTTTAACTGAAATATGAAACACAGTCAATTGGTTGATTGAATATGTTATCCAGCCTGAGCCTAATTGCTTACTAGTTTATTTGGTCTATCAATGTTTTTGCAAAAACATATTTTCGTTTCCTTGCACCATAATAATTGTTTTAGACGGTTGATGTCTTCCTTCTCCATTTTTGTTGTCAATGATGTTGTTTGGACTTCAGAAATGTTGGATGAATGCCCATTGTATTATGACAAATTCAATCTTTTATTGAGCTGATTTCTTTAATTAAGAAGTCTGTCTTGCATCCAACTTTGTTGAGAGTACAAGTAGTGCTAAGCAATCAATTGTCCTTATTTAGGAAAGAAAGCTCATCATGCTTATGATTAGTTCTATCTTTATACCTTGATTCCATTCATGCAACATACGCGTTTACTGCAATTGTTAGTGAAACTTTGATTGACGTGTAGGGATTCTATACAATAAAGATTTTTTATGTCCTGATTGTTTACACTTCTTACTGATTATTATGCTTCCTGTTGCATTCAGGTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATAT</genome_strand>
        <mrna_strand>GGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAATGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG........................................................................................CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210839" ref_strand="+" ref_description="SGN-E210839 [cLEC-68-F10]">
      <seq>tgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgccattgaaagcgtcttcgtttcttccatttcttcagggctcgaaatggcttccttgtaatgagcccagtattgggtcctcggggagttccgaggtggataatggtggaactgaaactaggtgtagtgaaagttctgttcggtcggagcctttgtccaatgaaatgaaggtttccaagagccgttgggtgtcaaagttgttgaacatctgttctgatgatgcaaaggctgcttttacagctttgagtgttagcataatgtttaagtcatctttggctgagccaagatcaattccatctgcttccatgtcccctactctggataagggtgaccgtataatggctgaaaaggtttcatatttttttcggcaacctgacatttcagacatagtgatatttaaagcaccaccaatccttcagcatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67055" stop="65018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66755" g_stop="66132" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66131" i_stop="65387" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65318" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="693" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65229" g_stop="65222" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="701" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E210839" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66755" e_stop="66132"/>
          <exon e_start="65386" e_stop="65318"/>
          <exon e_start="65229" e_stop="65222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAGGTATATTTAATCCTCCCTTTTTTCTGAAGTTTGTTGATATAGCTTGAAGACGTAGAGATAATGGCAAGTAGCTTGATGAGTATATTACTGTTTTTCATTGGCAAATAACTGGCCTGAATATGTGATTGATGCTTACCATGATATTTGATGTCTTGAAAATCTAGTATTTTCCTATTCAGTTTTCAGAGTCTTACTAGAATTATTTGATCTGATGACACTTTTTAACTGAAATATGAAACACAGTCAATTGGTTGATTGAATATGTTATCCAGCCTGAGCCTAATTGCTTACTAGTTTATTTGGTCTATCAATGTTTTTGCAAAAACATATTTTCGTTTCCTTGCACCATAATAATTGTTTTAGACGGTTGATGTCTTCCTTCTCCATTTTTGTTGTCAATGATGTTGTTTGGACTTCAGAAATGTTGGATGAATGCCCATTGTATTATGACAAATTCAATCTTTTATTGAGCTGATTTCTTTAATTAAGAAGTCTGTCTTGCATCCAACTTTGTTGAGAGTACAAGTAGTGCTAAGCAATCAATTGTCCTTATTTAGGAAAGAAAGCTCATCATGCTTATGATTAGTTCTATCTTTATACCTTGATTCCATTCATGCAACATACGCGTTTACTGCAATTGTTAGTGAAACTTTGATTGACGTGTAGGGATTCTATACAATAAAGATTTTTTATGTCCTGATTGTTTACACTTCTTACTGATTATTATGCTTCCTGTTGCATTCAGGTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAGGTACGCCAGAGTTGTCTAGATTGCTAGTAGTGTGAGATTTTTACTCTGCACATGCATTTATCAACAGGCAGTTTTCTGTATCTTGCAGCATATTTT</genome_strand>
        <mrna_strand>TGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAATGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG........................................................................................CATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378532" ref_strand="+" ref_description="SGN-E378532 [TUS-26-L18]">
      <seq>ctctgatttcaacaatcccgatggcctttcttcgcttcttggaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcgcgtattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgccattgaaagcgtcttcgtttcttccatttcttcagggctcgaaatggcttccttgtaatgagcccagtattgggtcctcggggagttccgaggtggataatggtggaactngaactaggtgtagtgaaagttctgttcggtcggagcctttgtccaatgaaatgaaggtttccaagagccgttgggtgtcaaagttgttgaacatctgttctgatgatgcaaaggctgcttttacagctttgagtgttagcataatgtttaagtcatctttggctgagccaagatcaattccatctgcttccatgtccccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67257" stop="65867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66957" g_stop="66167" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E378532" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66957" e_stop="66167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTA</genome_strand>
        <mrna_strand>CTCTGATTTCAACAATCCCGATGGCCTTTCTTCGCTTCTTGGAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCGCGTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAATGGTGGAACTNGAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304932" ref_strand="+" ref_description="SGN-E304932 [cLEX-10-F5]">
      <seq>ctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgccattgaaagcgtcttcgtttcttccatttcttcaaggctcgaaatggcttccttgtaatgagcccactattgggtcctcggggagttccgaggtggataatggtggaactgaaactaggtgtagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67088" stop="66051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66788" g_stop="66351" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E304932" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66788" e_stop="66351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAA</genome_strand>
        <mrna_strand>CTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAAGGCTCGAAATGGCTTCCTTGTAATGAGCCCACTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAATGGTGGAACTGAAACTAGGTGTAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255023" ref_strand="+" ref_description="SGN-E255023 [cLEG-31-E21]">
      <seq>ttttgatccgattctttcatctcaccgggcaattctttacctcattccggggacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgccattgaaagcgtcttcgtttcttccatttcttcanggctcgaaatggcttccttgtaatgagcccagtattgggtcctcgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67345" stop="66095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67045" g_stop="66395" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E255023" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67045" e_stop="66395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGA</genome_strand>
        <mrna_strand>TTTTGATCCGATTCTTTCATCTCACCGGGCAATTCTTTACCTCATTCCGGGGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCANGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699402" ref_strand="+" ref_description="SGN-E699402 [FA09DG07]">
      <seq>cgccccttttgaaaatcctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgattacttttccaattctctgatttcatcaatcccgatggcatttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagcacaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaacctcggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgcctttgaaagcgtcttcctttcttccatttcttcagggctcgaaatggctcccttgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67364" stop="66119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67066" g_stop="66419" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E699402" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67066" e_stop="66419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATG</genome_strand>
        <mrna_strand>CGCCCCTTTTGAAAATCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTACTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCATTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCACAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCTCGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCTTTGAAAGCGTCTTCCTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTCCCTTGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316604" ref_strand="+" ref_description="SGN-E316604 [cTOA-25-L2]">
      <seq>cgagttctcgccggccgtcgtcaagagcaaaatcatcgtttcccttttccgttcacttaatacccttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggacgttttcgtccagttcagcgtgttcttcgtttgcttctgagcttcttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcagcattgaaagcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67426" stop="66164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67126" g_stop="66464" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E316604" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67126" e_stop="66464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTT</genome_strand>
        <mrna_strand>CGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGACGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTCTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCAGCATTGAAAGCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259507" ref_strand="+" ref_description="SGN-E259507 [cLEG-42-I16]">
      <seq>gttgacctaactttttaattcaccgatttcttttccaattctctgagggcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcgttggggatttcgccattgaaagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67297" stop="66166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66997" g_stop="66466" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E259507" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66997" e_stop="66466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTC</genome_strand>
        <mrna_strand>GTTGACCTAACTTTTTAATTCACCGATTTCTTTTCCAATTCTCTGAGGGCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308060" ref_strand="+" ref_description="SGN-E308060 [cLEY-14-N13]">
      <seq>aataccctcttctttttctacggcgagttctcgccggccgtcgtcaatagcaaaatcatcgttccccttttccgttcacttaatacccttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtcttgtaccatgaatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67449" stop="66192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67149" g_stop="66492" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E308060" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67149" e_stop="66492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCG</genome_strand>
        <mrna_strand>AATACCCTCTTCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAATAGCAAAATCATCGTTCCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301082" ref_strand="+" ref_description="SGN-E301082 [cLEW-22-D4]">
      <seq>ctttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaacctctccccgttagtttccgaaccccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcaccagtcacctattccggctaccttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtacctgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggaccaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcacctttggttgttggattgatttcgctgatgaggtcctcttctgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67363" stop="66208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67063" g_stop="66508" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E301082" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67063" e_stop="66508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAA-CTCTCCCCGTTAGTTTCCGAA-CCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCA-CAGTCACCTATTCCGGCTA-CTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTA-CTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGA-CAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTC</genome_strand>
        <mrna_strand>CTTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACCTCTCCCCGTTAGTTTCCGAACCCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACCAGTCACCTATTCCGGCTACCTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACCTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACCAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303020" ref_strand="+" ref_description="SGN-E303020 [cLEW-26-G24]">
      <seq>aataccctccgctttttctacggcgagttctcgccggccgtcgtcaagagcaaaatcatcgtttcccttttccgttcacttaatacccttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggtttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctgagctttttggcggaagttcgaattcaccttttgttgttggattgatttcgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67449" stop="66225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67149" g_stop="66525" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E303020" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67149" e_stop="66525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGG-TTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATG</genome_strand>
        <mrna_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTTGTTGTTGGATTGATTTCGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316417" ref_strand="+" ref_description="SGN-E316417 [cTOA-25-L3]">
      <seq>cgagttctcgccggccgtcgtcaagagcaaaatcatcgtttcccttttccgttcacttaatacccttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttactcttcccggtcgttttcgtccagttcagcgtgttcttcgtttgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67426" stop="66281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67126" g_stop="66581" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E316417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67126" e_stop="66581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTG</genome_strand>
        <mrna_strand>CGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297754" ref_strand="+" ref_description="SGN-E297754 [cLEW-15-K17]">
      <seq>cttaatacccttttgaaaaaccctaattttgatccgatattttcaacttaccgatcaattctttacctcattgcgttgacctaactaatcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaagtttttacaactctccccgatagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcaaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccggatcaaattgctccgatttccgccggacaaaaccgaaaccactgccggtgagtaatacttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67371" stop="66328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67071" g_stop="66628" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E297754" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67071" e_stop="66628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTC</genome_strand>
        <mrna_strand>CTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATATTTTCAACTTACCGATCAATTCTTTACCTCATTGCGTTGACCTAACTAATCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAAGTTTTTACAACTCTCCCCGATAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCAAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGGATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACTGCCGGTGAGTAATACTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331546" ref_strand="+" ref_description="SGN-E331546 [cTOD-9-H21]">
      <seq>aataccctccgctttttctacggcgagttctggccggccgtcgggaagagcaaaatcatcgtttcccttttccgttcacttaatacccttttgaaaaaccctaattttgatccgattctttcagctcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgttggttgcaggttttttcacgaatgtactgtccgatctcgaattttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaaccgaaaccacggccggtgagtaatacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67449" stop="66330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67149" g_stop="66630" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E331546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67149" e_stop="66630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTAC</genome_strand>
        <mrna_strand>AATACCCTCCGCTTTTTCTACGGCGAGTTCTGGCCGGCCGTCGGGAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359280" ref_strand="+" ref_description="SGN-E359280 [cLHT-31-O15]">
      <seq>gccgtcgtcgagagcgaaatcatcgctctccttttacgttcacttaataccctattgaaaaaccctacattggatccgattctttcagatcaccgctcaattctttacctcattccagggacctaacttttcaattcaccgatttcttttccaattctctgattccatcaatcccgatggcatttcttcgcttcttgtaaggtgtttacaactctccccgctagtttccgaacccacaattctctacatcttgctcggattattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagtcgtgggttgcaggttttttcacgaatgtactgtccgatctcgagttttccatccaccagctcaaaaacccgaatcaaattgctccgatttccgccggacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67386" stop="66359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67113" g_stop="66659" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E359280" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67113" e_stop="66659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAAC</genome_strand>
        <mrna_strand>GCCGTCGTCGAGAGCGAAATCATCGCTCTCCTTTTACGTTCACTTAATACCCTATTGAAAAACCCTACATTGGATCCGATTCTTTCAGATCACCGCTCAATTCTTTACCTCATTCCAGGGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTCCATCAATCCCGATGGCATTTCTTCGCTTCTTGTAAGGTGTTTACAACTCTCCCCGCTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGATTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTGGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAGTTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263884" ref_strand="+" ref_description="SGN-E263884 [cLEG-73-D14]">
      <seq>atcaccgttcaattctttacctcattccgttgacctaacttttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatttgtagttatggcgatccggttcacagtcacctattccggctacttagcccaaaacctagcttcatcggcttcttcgaaagccgttggttgcaggttttttcacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67324" stop="66436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67025" g_stop="66736" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E263884" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67025" e_stop="66736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATG</genome_strand>
        <mrna_strand>ATCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGCCGTTGGTTGCAGGTTTTTTCACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307330" ref_strand="+" ref_description="SGN-E307330 [cLEY-12-P7]">
      <seq>acctaactcttcaattcaccgatttcttttccaattctctgatttcatcaatcccgatggcctttcttcgcttcttgtaaggtttttacaactctccccgttagtttccgaacccacaattctctacatcttgctcggtttattacaatctgtacttatggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="67293" stop="66529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66993" g_stop="66829" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E307330" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66993" e_stop="66829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGAT</genome_strand>
        <mrna_strand>ACCTAACTCTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATCTGTACTTATGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716574" ref_strand="+" ref_description="SGN-E716574 [FB17BG11]">
      <seq>ccctttagggacaagaacgtgtgggagagtcctgaagagtgcaagcctgaacgatttcttaacggaaagtacgatccaatggaattgcagaagacaatggcgtttggggctggaaaaagggtatgtgctggtgctcagcaagcaatgacaattagttgcacagctattgctagattgatacaagagtttgaatggagcttaaaagaaggagaagaggaaaatgttgcaacaatgggtcttactactcataaacttcacccaatgctagctcatatcaagccaagaaattaaaggggaatctttaccgtaacaggtaaatttgttgtcgtgtgatcaggaggttactggttcagaccatggaaatattctcaatcgctcatgcagaaatgttagataaaactatgaataataaactctttgtggttcggccgttttagtgcatctggctgcccaagatttgaactttctactctgtattaccagagcttgctattttgttacttttcaagttatcactatgatgataattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="89444" stop="88324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89149" g_stop="88625" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E716574" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89149" e_stop="88625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATAGGGACAAGAACGTGTGGGAGAGTCCTGAAGAGTGGAAGCCTGAACGATTTCTTAACGGAAAGTATGATCCAATGGAATTGCAGAAGACAATGGCGTTTGGGGCTGGAAAAAGGGTATGTGCTGGTGCTCAGCAAGCAATGACAATTAGTTGCACAGCTATTGCTAGATTGATACAAGAGTTTGAATGGAGCTTAAAAGAAGGAGAAGAGAAAAATGTTGCAACAATGGGTCTTACTACTCATAAACTTCACCCGATGCTAGCTCATATCAAGCCAAGAAATTGAAGGGGAATATTTACCGTAACTTGGTAAATTTGTTGTCATGTGATCAGGAGGTTACTGGTTCAGACCATGGAAATATTCTC-AT-G--C--G--GAAATGTTAGATAAAACTATGAATAATAAACTCTTTGTGGTTCGGCCGTTTTAGTGCATCTGGCTGCCCAAGATTTGAACTTTCTACTCTGTATTAGCAGAGCTTGCTATTTTGTTACTTTTCAAGATATCACTATGATGATAATTTTG</genome_strand>
        <mrna_strand>CCCTTTAGGGACAAGAACGTGTGGGAGAGTCCTGAAGAGTGCAAGCCTGAACGATTTCTTAACGGAAAGTACGATCCAATGGAATTGCAGAAGACAATGGCGTTTGGGGCTGGAAAAAGGGTATGTGCTGGTGCTCAGCAAGCAATGACAATTAGTTGCACAGCTATTGCTAGATTGATACAAGAGTTTGAATGGAGCTTAAAAGAAGGAGAAGAGGAAAATGTTGCAACAATGGGTCTTACTACTCATAAACTTCACCCAATGCTAGCTCATATCAAGCCAAGAAATTAAAGGGGAATCTTTACCGTAAC-AGGTAAATTTGTTGTCGTGTGATCAGGAGGTTACTGGTTCAGACCATGGAAATATTCTCAATCGCTCATGCAGAAATGTTAGATAAAACTATGAATAATAAACTCTTTGTGGTTCGGCCGTTTTAGTGCATCTGGCTGCCCAAGATTTGAACTTTCTACTCTGTATTACCAGAGCTTGCTATTTTGTTACTTTTCAAGTTATCACTATGATGATAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242186" ref_strand="+" ref_description="SGN-E242186 [cLED-37-I1]">
      <seq>aaattgggctgaaacttatggacctatttattccatcaaaaccggcgcaaatacaattgttgtactcagttctagtgaacttgcaaaggaggctatggtgactagatattcatccatctcaactagaaagctaacaaacgcattgagaatccttacttgtgataagagtatagtcgcgataagtgattacgatgagtttcacaagacagcgaagcgccacatactgaccagtgttctaggaccaactgctcagaaacgcttccgtatccacagggacaccttggtagaaaatgtgtcaaagcaactacatgatttggttaggactgatcctaacgaagcaattaatctaaggaagtcatttcagtcggaactttttggtttagcattgaaacaagctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="92375" stop="90048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92075" g_stop="91985" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91984" i_stop="90744" i_length="1241">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90743" g_stop="90582" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="253" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90581" i_stop="90494" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90493" g_stop="90353" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="394" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90352" i_stop="90257" i_length="96">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90256" g_stop="90249" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="402" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E242186" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92075" e_stop="91985"/>
          <exon e_start="90743" e_stop="90582"/>
          <exon e_start="90493" e_stop="90353"/>
          <exon e_start="90256" e_stop="90249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAGGTAATCAAAATAATCACTCTCAAACCTCTTTTCTATGTTAATAAGTAAGAAACAAGCATTGGAGTTCTAAGTTCGTCGCAAAAAGTAAACCTTTTTGGTTGTAATCCATTTTCTAGTTGCTATGTAGCTTCTTCTGTCTTAATTTTTATGATGTCAAAAGGTTTTACGTCCTACTAATTGCTGGTTTTAAGTTGTGAAATGATTCAATCTGGTATTTCAAGTTTTTCTAGTTAGAAAGATACTAAAATATGAGATGGTACACTCGTAATAAAAGTTTAGTTAAAATGGTATGCAGAAAGAGGAGAGTGGCAACAGAGAAATGTAGACAAATTACGTGGTCCTTCAGCACCACACCATTTAGTAGAGGAATTGGATATGTTTCTTTAGTAATATGTACTGAGAGTCAGGAATATTTTACTTTAGTATGACTGGACCAGGGGATAAAACTTATAATCTGACTAATGCTGTATATGAGCCCCAGATTTTCCTGATAGCTGCAGTTGCATTGGTTTCAGTATTATATAGGATCGAACTTAAAGTACGTGTCCCTGCCTCTCGATGATCACTAAATGGATTGTATTGCCTAGTTCCTCTTTGTTGAGACTAGACCATACTACAAGGTGAAGCAGTTGGTGATTTAGACAACTGCTATCTCCATATTATATCCCTGGATTGTATGTTGGTTGTTCTCTGGTAAGACCTCAACTGTATAATTGGAAAATCTTCGGTTGTTGAGGTTCTGAATCACCGTACTAGATATGATAAAGTAGTGTCATGTACCACCTCAGTCGCGGCATATGTTGGCTGTGTATCAGCAAAGTTCCATTTTCACTATACAGTTGGTTTAGACTTTATAATTTTCTGATAAATATCTGAGAAAATACATAGAATATGAAGATCTTATAAACTAATGTTGAGGTAGAACGACTACTCGCACATTGTTGCACAGAGCTTAAAGTATTTACCTCCAGTTTCCTTGCAAGAGGAGAGCTTTTGCATTGTTTTAAGGTATTTAGTTCTTTATCACGTAGAATAAGCATCAACACCAAAGTAACGACTCAAATGTAACATTGACACTACTGGGGTGTCATCGATCACCAATAGCTTGAGTTATAAGCCAATATATAGAGGCATGTTTGGTGCTTATTTTTTAAATCACTGTTGTGTTATTTGTGTGCTTATCATATCTATACTCAAACACTTGATACAGATCTAAATATTGTCCTTTTTCGTCTTTTTAGGCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAGGTTTGTCATTTACAAATCGACCTCCATAATTCTCTTCATTTGTTTCATCGACTCCATATCTAACAGGAAAGTGCTGCTTAATATGCAGAAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACGAAGCAGTTAATCTAAGGAAGTCATTTCAGTCGGAACTTTTTGGTTTAGCATTGAAACAAGTTAGTTTTTCAAAATTCAGTTTCATCAGTATGTTGTTATTTTGGGAACTCCTTTAATCTGCGCGATCATTTTAAAAGTTTTAACTTCATTTGCAGGCTTTGGG</genome_strand>
        <mrna_strand>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAG........................................................................................AAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACGAAGCAATTAATCTAAGGAAGTCATTTCAGTCGGAACTTTTTGGTTTAGCATTGAAACAA................................................................................................GCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228231" ref_strand="+" ref_description="SGN-E228231 [cLED-2-H11]">
      <seq>aaattgggctgaaacttatggacctatttattccatcaaaaccggcgcaaatacaattgttgtactcagttctagtgaacttgcaaaggaggctatggtgactagatattcatccatctcaactagaaagctaacaaacgcattgagaatccttacttgtgataagagtatagtcgcgataagtgattacgatgagtttcacaagacagcgaagcgccacatactgaccagtgttctaggaccaactgctcagaaacgcttccgtatccacagggacaccttggtagaaaatgtgtcaaagcaactacatgatttggttaggactgatcctaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="92375" stop="90112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92075" g_stop="91985" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91984" i_stop="90744" i_length="1241">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90743" g_stop="90582" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="253" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90581" i_stop="90494" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90493" g_stop="90412" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="335" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E228231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92075" e_stop="91985"/>
          <exon e_start="90743" e_stop="90582"/>
          <exon e_start="90493" e_stop="90412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAGGTAATCAAAATAATCACTCTCAAACCTCTTTTCTATGTTAATAAGTAAGAAACAAGCATTGGAGTTCTAAGTTCGTCGCAAAAAGTAAACCTTTTTGGTTGTAATCCATTTTCTAGTTGCTATGTAGCTTCTTCTGTCTTAATTTTTATGATGTCAAAAGGTTTTACGTCCTACTAATTGCTGGTTTTAAGTTGTGAAATGATTCAATCTGGTATTTCAAGTTTTTCTAGTTAGAAAGATACTAAAATATGAGATGGTACACTCGTAATAAAAGTTTAGTTAAAATGGTATGCAGAAAGAGGAGAGTGGCAACAGAGAAATGTAGACAAATTACGTGGTCCTTCAGCACCACACCATTTAGTAGAGGAATTGGATATGTTTCTTTAGTAATATGTACTGAGAGTCAGGAATATTTTACTTTAGTATGACTGGACCAGGGGATAAAACTTATAATCTGACTAATGCTGTATATGAGCCCCAGATTTTCCTGATAGCTGCAGTTGCATTGGTTTCAGTATTATATAGGATCGAACTTAAAGTACGTGTCCCTGCCTCTCGATGATCACTAAATGGATTGTATTGCCTAGTTCCTCTTTGTTGAGACTAGACCATACTACAAGGTGAAGCAGTTGGTGATTTAGACAACTGCTATCTCCATATTATATCCCTGGATTGTATGTTGGTTGTTCTCTGGTAAGACCTCAACTGTATAATTGGAAAATCTTCGGTTGTTGAGGTTCTGAATCACCGTACTAGATATGATAAAGTAGTGTCATGTACCACCTCAGTCGCGGCATATGTTGGCTGTGTATCAGCAAAGTTCCATTTTCACTATACAGTTGGTTTAGACTTTATAATTTTCTGATAAATATCTGAGAAAATACATAGAATATGAAGATCTTATAAACTAATGTTGAGGTAGAACGACTACTCGCACATTGTTGCACAGAGCTTAAAGTATTTACCTCCAGTTTCCTTGCAAGAGGAGAGCTTTTGCATTGTTTTAAGGTATTTAGTTCTTTATCACGTAGAATAAGCATCAACACCAAAGTAACGACTCAAATGTAACATTGACACTACTGGGGTGTCATCGATCACCAATAGCTTGAGTTATAAGCCAATATATAGAGGCATGTTTGGTGCTTATTTTTTAAATCACTGTTGTGTTATTTGTGTGCTTATCATATCTATACTCAAACACTTGATACAGATCTAAATATTGTCCTTTTTCGTCTTTTTAGGCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAGGTTTGTCATTTACAAATCGACCTCCATAATTCTCTTCATTTGTTTCATCGACTCCATATCTAACAGGAAAGTGCTGCTTAATATGCAGAAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACG</genome_strand>
        <mrna_strand>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAG........................................................................................AAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="95098" stop="94053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94798" g_stop="94352" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94798" e_stop="94352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATAATGCATAATTATAAGTGTATAGCAAGAAGATACATG-TTCT-TCTTGCTTTATACAAAAACAGGAACACAATATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATATCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATATTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAGGTTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="95099" stop="94204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94799" g_stop="94478" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94799" e_stop="94478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATAATGCATAATTATAAGTGTATAGCAAGAAGATACATG-TTCT-TCTTGCTTTATACAAAAACAGGAACACAATATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATATCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="-" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="95099" stop="94204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94799" g_stop="94494" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94799" e_stop="94494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATAATGCATAATTATAAGTGTATAGCAAGAAGATACATG-TTCT-TCTTGCTTTATACAAAAACAGGAACACAATATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATATCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395603" ref_strand="+" ref_description="SGN-E395603 [TUS-16-H8]">
      <seq>tttatttgattacttgcttaatttcacatccccagaatcttaaaaaatggggttgaaggaattttgtggggttctttagggttttagcttcaaaaatttaggtgaaaaagagaggaaatagagatgttagatgcaagaaggcctcattttcttgtgggttttaaccctttcatgaattctgaaaaattgaaaattccatcaaaattcattaaacatatggaaggaggggattctggaacaacagttctggtgggtcccagtggaaatgcttggcctgtggacttaatacagcaagatgatggtttattcttcaataatggatgggtttcatttgttaaagatcactgccttgaaacaggggattctttggttttcagatatgacggtgatttgcatttcactgtgcaagtatttgacgagagttcatgtgagaaggaggcttcttataacgctgactgcagtcaaggagcaactgacttgtacaatcttgctctgaaaaaaagagaccgaggaaactctgttttattagattgtatggttgaaggtgtaccgaagaaaatgaaaagcaccgagatcccttccgaatgcacaagtagccaggatacacatggtcttgcatctagcaaggatgggtacactccagaagatgcagtttgctcatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="95434" stop="97458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95734" g_stop="95922" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95923" i_stop="96681" i_length="759">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96682" g_stop="97158" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="666" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E395603" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95734" e_stop="95922"/>
          <exon e_start="96682" e_stop="97158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAACAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTGGTAAGCATTGGTTCACATTGCCATTAGCTTCACAACTTGTTGGTACATTCTTGTTTGTTGAATTTCTCTTTTTTGTTCCTCTATATTATGCTGGAATTATTCTTTCATCCTGTGTTGAGTTTGTTGCTTTTCTTACTGCATTTGGGCTAGTTGTTGCAAATGGGCAAAAAGGGGTTGAACAAGAATGTTCTTTTTGGATCAAAGCAACAAACTTTAGTGTAACTATAAGGACTATTCATTGGCTAATAATGCTGTTTTTGGAACAAAGCAACAAACTTTAGTGTACCCAGAATATGTTTTTCGATCAAAGCAACAAACTTTAGTGTAACTATATAGACTACTCATTGTCTAAGAATGTTGTTTTTTGAACAAAGCAGTAAACTTTAGTGCACCCAATATAGTTTGTTTTTGGATCAAAGCTGTACATTCATTCTTTAAGTTTAACAGGCTTCATAAGCTATAAAGTAAGATCTTAGCGTTCAGGAGTACAAAGGGGGGGATTGACTTAGGGCCCTGCATAGGTGTGGGACAGGCTCCATTTGAATGAGCTATGTCAGGCGTGTGATAATTTTGCAACATGGTTATTTTAAGGCAGTATTTAAGAGTTTTGTAATAGAGATCAGTATTCGTTGCTCTTCGAACGACTTACCTATGCATTTTATAATGAAGTCATTTTATTTTAAAAACAAACTCTTCTGAATAACTTTATGTTATCAACTCTTGCAATGTTTATTAATTGTTTTGATTCCTATATTGCAGAAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAATGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAAAGAGACCGAGGAAACTCTGTTTTATTAGATTGTATGGTTGAAGGTGTACCGAAGAAAATGAAAAGCACCGAGATCCCTTCCGAATGCACAAGTAGCCAGGATACACATGGTCTTGCATCTAGCAAGGATGGGTACACTCCAGAAGATGCAGTTTGCTCATATGCA</genome_strand>
        <mrna_strand>TTTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAATAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAACGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAAAGAGACCGAGGAAACTCTGTTTTATTAGATTGTATGGTTGAAGGTGTACCGAAGAAAATGAAAAGCACCGAGATCCCTTCCGAATGCACAAGTAGCCAGGATACACATGGTCTTGCATCTAGCAAGGATGGGTACACTCCAGAAGATGCAGTTTGCTCATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206067" ref_strand="+" ref_description="SGN-E206067 [cLEC-20-J16]">
      <seq>ttatttgattacttgcttaatttcacatccccagaatcttaaaaaatggggttgaaggaattttgtggggttctttagggttttagcttcaaaaatttaggtgaaaaagagaggaaatagagatgttagatgcaagaaggcctcattttcttgtgggttttaaccctttcatgaattctgaaaaattgaaaattccatcaaaattcattaaacatatggaaggaggggattctggaacaacagttctggtgggtcccagtggaaatgcttggcctgtggacttaatacagcaagatgatggtttattcttcaataatggatgggtttcatttgttaaagatcactgccttgaaacaggggattctttggttttcagatatgacggtgatttgcatttcactgtgcaagtatttgacgagagttcatgtgagaaggaggcttcttataacgctgactgcagtcaaggagcaactgacttgtacaatcttgctctgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="95435" stop="97293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95735" g_stop="95922" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95923" i_stop="96681" i_length="759">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96682" g_stop="96993" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="500" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E206067" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95735" e_stop="95922"/>
          <exon e_start="96682" e_stop="96993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAACAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTGGTAAGCATTGGTTCACATTGCCATTAGCTTCACAACTTGTTGGTACATTCTTGTTTGTTGAATTTCTCTTTTTTGTTCCTCTATATTATGCTGGAATTATTCTTTCATCCTGTGTTGAGTTTGTTGCTTTTCTTACTGCATTTGGGCTAGTTGTTGCAAATGGGCAAAAAGGGGTTGAACAAGAATGTTCTTTTTGGATCAAAGCAACAAACTTTAGTGTAACTATAAGGACTATTCATTGGCTAATAATGCTGTTTTTGGAACAAAGCAACAAACTTTAGTGTACCCAGAATATGTTTTTCGATCAAAGCAACAAACTTTAGTGTAACTATATAGACTACTCATTGTCTAAGAATGTTGTTTTTTGAACAAAGCAGTAAACTTTAGTGCACCCAATATAGTTTGTTTTTGGATCAAAGCTGTACATTCATTCTTTAAGTTTAACAGGCTTCATAAGCTATAAAGTAAGATCTTAGCGTTCAGGAGTACAAAGGGGGGGATTGACTTAGGGCCCTGCATAGGTGTGGGACAGGCTCCATTTGAATGAGCTATGTCAGGCGTGTGATAATTTTGCAACATGGTTATTTTAAGGCAGTATTTAAGAGTTTTGTAATAGAGATCAGTATTCGTTGCTCTTCGAACGACTTACCTATGCATTTTATAATGAAGTCATTTTATTTTAAAAACAAACTCTTCTGAATAACTTTATGTTATCAACTCTTGCAATGTTTATTAATTGTTTTGATTCCTATATTGCAGAAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAATGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAA</genome_strand>
        <mrna_strand>TTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAATAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAACGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272128" ref_strand="+" ref_description="SGN-E272128 [cLEN-4-D9]">
      <seq>gaagatgcagtttgctcatatgcaggaagaaattatgctgctagttttctggatgaaatggagaatgctggagatgcattaaacagtaaagttaccattgctgtgccagctcaagcaaagataatctttagcaatccaggcaatgcttcctccgagaaagatatgtggttgcctgcacaggaagcagaaaaggttgctggtttgtttacctcaagtttgcccagctttactaaagttatgaagaggttcaacatcagtggctcatacaccctgcatatcccttaccaatttgccacggaacaccttcccaactgcaaggtgaagattttacttcataatttagaagggaaaacttggactgtgaattcaattccgactacaagagtacaaacatcacataccttttgcggagggtggttatcttttgttcgcgacaataacattgatttgggagatacctgcatttttgagcttgtccgcaagtgtgaattgcgtgtgcgtgttcttaaggcggaaaaggaaggaagtgattacagtagtaaggtagttgatgaaggactagttattgattatgcaaaaaattctggatgtaagtccaggaaagtgggatcgagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="96835" stop="99535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97135" g_stop="97273" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97274" i_stop="97731" i_length="458">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97732" g_stop="97865" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="273" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97866" i_stop="98889" i_length="1024">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98890" g_stop="99235" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="619" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E272128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97135" e_stop="97273"/>
          <exon e_start="97732" e_stop="97865"/>
          <exon e_start="98890" e_stop="99235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCAGTTTGCTCATATGCAGGAAGAAATTATGCTGCTAGTTTTCTGGATGAAATGGAGAATGCTGGAGATGCATTAAACAGTAAAGTTACCATTGCTGTGCCAGCTCAAGCAAAGATAATCTTTAGCAATCCAGGTAAATGGTTGTATTGTTTATGTTTATTGTTTTCAGTTCAATTTTTCTAGTTTGAGTAGTGTTCTTTGAATTGTCTATAAGTTTAATCAAGCCAATTTGATGTTACAGTTCATTTAATCATGCACGGACATTTAATAAACACCAATTTTTCTCGTTGAATTGTGCAACTGCCTCGGCGAAAATCTACGTGTTTAGAGAGCCGACACTTTCATTTGTATATTTAAGTTCAGAACATACTCTTCTCATGTGTTGCCTGATTCTTTACAACTATGTAATATTTATTACTGTGCGAAGTGTTTGTATACATTTTTGCCCTGCAATTCTCCTAACCAAGTTTTTTGTTGTTTTCGTAATAGCAATGAAATTTCAGCTGGTAGAAATAACTATATAACAAATCTTTTAGTAATGATTTGGAATAGTATCTGGTATTTTGAATCTAAAGCAAAGATGAAAAACAGGCAATGCTTCCTCCGAGAAAGATATGTGGTTGCCTGCACAGGAAGCAGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTGGTGAGTAGGTCTTCTGTTTTCTTTAAACTATCATTTCCTGAAATGTCTTGCTGAACTACAAAATCTTATAGTAGTCTTAGCTACTGTAATGCATTGCTTCAACATATCTTACTATCAATAAGTGCATCAAATGAGCTTTTACGGAGGAAGACAACTTATATTTATTTACAGGATAATCAACATTCGGTTCCTTTATCCCCTTTTACCTTTCATGATGAATTGGCTAAACTCATAAAAAAATGGCACTGAAATCGATTTTTATTGACCAATCAGAATTGTTCATAAATCTTTTAAACATGAATGTTGTTGTTGAGGATTATGTGCAACGTGGTAAAGTTGTTTTGGTTGTAATAGTTTTGTTGCCAACATCTGAGCTGCTTAATGATGTTTCTGTTTGTTTTACTGACTGCATATTTGTTCTTAACCTGCTTGTTTTATAGTGACAGCAAGCCTATTTTGTTGATATGGCTGATGTTGTTATCTATTCCCTATGTTCCAATTTGTTTGTCTGGTTCTTGGCCCCAATTTAATAAGTAAAGGAAACGTTAGAATCTTGTGGTTTTAAAACAAAGACACTTAGAATGTACCAAAATGCGCTTTAATCTTGTGGTCTTAAACATGCTGGAAAGTTAGACTTAAAGAATTGTCAAAAAGGGAAAGGGCGTTCTTTTTGAAACGGACTATAAAGTGAAGTAAGACAAACATTTCATTTTACCTTTTATCAAACAAAAAAAGTAAGAGAAACAAATTGAAATGGAGGGAGTATATATTAATCTAATCCCCCAAGGAGTTGTGGCATTCAGTTGACTTTGTAGTCATTAGTGATTGATTTATGGTATGCCTGAGCTTTTGCGTGTGGGTTTGCTTGCTTCATCGTAGGAGATGAATCACTCTGGTGACATTGCCTTTATTTGATGTTTAGTTTGGAGTAATGTTGCAACAATTAGACAAGGTTATTCTTCTTTCACAACTCCTGCATGTGCATCACTTGGTTTGTTGATCTCCTTCATATTTTCTTTGGCAGCATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTG</genome_strand>
        <mrna_strand>GAAGATGCAGTTTGCTCATATGCAGGAAGAAATTATGCTGCTAGTTTTCTGGATGAAATGGAGAATGCTGGAGATGCATTAAACAGTAAAGTTACCATTGCTGTGCCAGCTCAAGCAAAGATAATCTTTAGCAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTCCTCCGAGAAAGATATGTGGTTGCCTGCACAGGAAGCAGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211641" ref_strand="+" ref_description="SGN-E211641 [cLEC-67-L13]">
      <seq>agaaaaggttgctggtttgtttacctcaagtttgcccagctttactaaagttatgaagaggttcaacatcagtggctcatacaccctgcatatcccttaccaatttgccacggaacaccttcccaactgcaaggtgaagattttacttcataatttagaagggaaaacttggactgtgaattcaattccgactacaagagtacaaacatcacataccttttgcggagggtggttatcttttgttcgcgacaataacattgatttgggagatacctgcatttttgagcttgtccgcaagtgtgaattgcgtgtgcgtgttcttaaggcggaaaaggaaggaagtgattacagtagtaaggtagttgatgaaggactagttattgattatgcaaaaaattctggatgtaagtccaggaaagtgggatcgagttctgatcaagcgaaggttatgacatatgataaaaaaggatctactcctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="97478" stop="99584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97778" g_stop="97865" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97866" i_stop="98889" i_length="1024">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98890" g_stop="99284" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="483" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E211641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97778" e_stop="97865"/>
          <exon e_start="98890" e_stop="99284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTGGTGAGTAGGTCTTCTGTTTTCTTTAAACTATCATTTCCTGAAATGTCTTGCTGAACTACAAAATCTTATAGTAGTCTTAGCTACTGTAATGCATTGCTTCAACATATCTTACTATCAATAAGTGCATCAAATGAGCTTTTACGGAGGAAGACAACTTATATTTATTTACAGGATAATCAACATTCGGTTCCTTTATCCCCTTTTACCTTTCATGATGAATTGGCTAAACTCATAAAAAAATGGCACTGAAATCGATTTTTATTGACCAATCAGAATTGTTCATAAATCTTTTAAACATGAATGTTGTTGTTGAGGATTATGTGCAACGTGGTAAAGTTGTTTTGGTTGTAATAGTTTTGTTGCCAACATCTGAGCTGCTTAATGATGTTTCTGTTTGTTTTACTGACTGCATATTTGTTCTTAACCTGCTTGTTTTATAGTGACAGCAAGCCTATTTTGTTGATATGGCTGATGTTGTTATCTATTCCCTATGTTCCAATTTGTTTGTCTGGTTCTTGGCCCCAATTTAATAAGTAAAGGAAACGTTAGAATCTTGTGGTTTTAAAACAAAGACACTTAGAATGTACCAAAATGCGCTTTAATCTTGTGGTCTTAAACATGCTGGAAAGTTAGACTTAAAGAATTGTCAAAAAGGGAAAGGGCGTTCTTTTTGAAACGGACTATAAAGTGAAGTAAGACAAACATTTCATTTTACCTTTTATCAAACAAAAAAAGTAAGAGAAACAAATTGAAATGGAGGGAGTATATATTAATCTAATCCCCCAAGGAGTTGTGGCATTCAGTTGACTTTGTAGTCATTAGTGATTGATTTATGGTATGCCTGAGCTTTTGCGTGTGGGTTTGCTTGCTTCATCGTAGGAGATGAATCACTCTGGTGACATTGCCTTTATTTGATGTTTAGTTTGGAGTAATGTTGCAACAATTAGACAAGGTTATTCTTCTTTCACAACTCCTGCATGTGCATCACTTGGTTTGTTGATCTCCTTCATATTTTCTTTGGCAGCATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAA</genome_strand>
        <mrna_strand>AGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255873" ref_strand="+" ref_description="SGN-E255873 [cLEG-35-F19]">
      <seq>ttttgttcgcgacaataacattgatttgggagatacctgcatttttgagcttgtccgcaagtgtgaattgcgtgtgcgtgttcttaaggcggaaaaggaaggaagtgattacagtagtaaggtagttgatgaaggactagttattgattatgcaaaaaattctggatgtaagtccaggaaagtgggatcgagttctgatcaagcgaaggttatgacatatgataaaaaaggatctactcctgaaaaagagaaacatggcgatatgttgaagaatcatcagctccattctcagtcaaagattagcagtggagattcagctatcaggaaacctactagttctcaagataaacagggttctttcaccaagagctgtatgtctatgaaatcagtacctgaagagaaattagccgctgagtctttcatttccaatttccctcatttcgtgcgaatcatgaaaaaattcaacattagtggctcttacaccttgaaagttccatgtcggttctcaatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="98739" stop="101429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99039" g_stop="99355" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99447" g_stop="99616" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="487" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101101" g_stop="101129" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="516" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E255873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99039" e_stop="99355"/>
          <exon e_start="99447" e_stop="99616"/>
          <exon e_start="101101" e_stop="101129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAGGTAATTTGAAGGACAATTAACTAACTTATTTTAGGTGTCCGTCCTCACACTGAATTTGTATTGAATCCTTTCAACTATCGTGCTCGAACAGCTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTGGTGAGTTCTTCTGCATGTTTTTCCTTTTTATTTATTCTTACTGTCCCAACCTTTTCCATCCCATCAAGTTGCATAATATGGATTCCAAACATTCATGATCATCTTCGAAGAATTTTTCCTTTTCAATATTTTTCTATTGGAGCTTGTTAATTCTTTCTCAAATGTTTAATATATGTCAAAATCATTGTTTCCCAACATAAACAATTATTTTCTACTAGAAACTAAATGCCCACTGGACTTGACGCCTAGTTTTGTCTCTCTATAAAGTTGATGTGTTTGGTATTTGACCCCTCTTTGGCTTCTAGTAGATAACTCTTGTTTGATAAGGGCCTTCTAACTTGGCATAAAATCAACAGTCAAAACAAAGTTGTTGCCCGAGTGAACTTCTTTTTTCTTTTTGATGAAGTAATATGTTTTTTTAAAAAAACATTAAGGAGATGTATATATACAAGAGGCATAGTTAAGTAACAGATTGACAAAAGAGAGTATTTCTGTCAGCCCCCTATACAAAGTTTTGATCGAAGACTTTGCATATAACCAAGTTAAGACAATTGTAGGAGCTCCAGTCATCCGTGTAAATGATGTGAATCTTGTTAGCGATGCCTTTTGTTTTTACATCACTGACTTATAAAGTTAATCATAAATTTTGTGGTGTCAATTCTATTGGACTTACATCAAAGTAAATAGATCGTGACCCCCCTAACTTGTCGAGTCTTATTCGGTGCACACCTAAACTTGGCATTGGCCTAATTACTCCCATCAACTTGGTAATTTGACTGTCACAACCCCCTTGAACGCTGACATAGGCGCTGCTACATGGAATTCTTTTCTTAATTCATGTAACTTTCTTTAGATAAAATATATTTTTTTCCTTTTTAAGTTTACTAATTATATAAATCATCTTTTCAGAGCCAGTTCTGTAACAAATAAGAAATAACATAAAATGGAACAACAATATTTTGGCTATAAGTTTTTTATTTGGCTAAAGATATTATATTCTAAATAAGGCCAAGACAAGAAGAAATACACCTTTACGAATAATCATTGCATCCAAAAAAGAGAGGAATTAAATTTGATCTAAATATTTTACGTATTTGACCCGAAAATAGAACAATGCACCATTGAAATAAATAGTCTTGGCATGAAACTGAGTTGAGATTGCTAAAGAAGGAAATTAAAACTGGTTTAACTGGTTATTTGTAACGATTAAATGTGAGTCTAGCCGTTGTATGGATCAGCATGCATACTTTTGATACTATCTCAATGTGCTGTAAGTAGAGCTGCTTCATTTATTAAAGAAAACGTAATATTAAGTAAAAGCATCACGACTATTTTGGTCTTGAATAGATTACACCAATGGCATTCTCTTCATTTCTGCTGATACTTGTTCCTTAGGCCAGTTTAAGGTGTTGGATGTTATGGCGTTTCTCATGCTATTCTTTGCTTTAAATTCATGTTCTTTGAGCCTTCTACGTCTTTTACAGAAAGTTCCATGTCGGTTCTCAATGGAACA</genome_strand>
        <mrna_strand>TTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAG...........................................................................................CTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCATGTCGGTTCTCAATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210068" ref_strand="+" ref_description="SGN-E210068 [cLEC-40-C4]">
      <seq>atttttgagcttgtccgcaagtgtgaattgcgtgtgcgtgttcttaaggcggaaaaggaaggaagtgattacagtagtaaggtagttgatgaaggactagttattgattatgcaaaaaattctggatgtaagtccaggaaagttggatcgagttctgatcaagcgaaggttatgacatatgataaaaaaggatctactcctgaaaaagagaaacatggcgatatgttgaagaatcatcagctccattctcagtcaaagattagcagtggagattcagctatcaggaaacctactagttctcaagataaacagggttctttcaccaagagctgtatgtctatgaaatcagtacctgaagagaaattagccgctgagtctttcatttccaatttccctcatttcgtgcgaatcatgaaaaaattcaacattagtggctcttacaccttgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="98779" stop="99916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99079" g_stop="99355" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99447" g_stop="99616" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="447" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E210068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99079" e_stop="99355"/>
          <exon e_start="99447" e_stop="99616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAGGTAATTTGAAGGACAATTAACTAACTTATTTTAGGTGTCCGTCCTCACACTGAATTTGTATTGAATCCTTTCAACTATCGTGCTCGAACAGCTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG</genome_strand>
        <mrna_strand>ATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTTGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAG...........................................................................................CTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368552" ref_strand="+" ref_description="SGN-E368552 [TUS-23-B10]">
      <seq>aaagattagcagtggagattcagctatcaggaaacctactagttctcaagataaacagggttctttcaccaagagctgtatgtctatgaaatcagtacctgaagagaaattagccgctgagtctttcatttccaatttccctcatttcgtgcgaatcatgaaaaaattcaacattagtggctcttacaccttgaaagttccatgtcggttctcaatggaacacctcccaaactgcagaacagagattgtgcttcagaacttgaaaggagaatgttggactgtaaattcaattccgactgtaaaggtacaaacgctgcacacattctgtggaggatggtcggcatttgtccgggagaatgacatccagatgggagatatctgcatatttgagctcattgggaaatatgaaatgcgtgtacatgtatgtgcaattgggaagaaggggttagattaccaaaatgggacagctcctaaagagtcggatatccttgcttccttgacaagctagagacctttggtgtgaaacactgtaggaaagattacttcttgcgtaataaaaggcttggcgtttcactggaagataacgaaacttgaatacatgggatcagaaaaggtacacatatcaatgttatggagaagcacttgagtagattatcaaatatttgactaggttggccatatgccttcagtagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="99033" stop="102245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99333" g_stop="99355" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99447" g_stop="99616" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101101" g_stop="101467" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="560" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101468" i_stop="101810" i_length="343">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101811" g_stop="101945" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="695" r_length="135" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E368552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99333" e_stop="99355"/>
          <exon e_start="99447" e_stop="99616"/>
          <exon e_start="101101" e_stop="101467"/>
          <exon e_start="101811" e_stop="101945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTAGCAGTGGAGATTCAGGTAATTTGAAGGACAATTAACTAACTTATTTTAGGTGTCCGTCCTCACACTGAATTTGTATTGAATCCTTTCAACTATCGTGCTCGAACAGCTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTGGTGAGTTCTTCTGCATGTTTTTCCTTTTTATTTATTCTTACTGTCCCAACCTTTTCCATCCCATCAAGTTGCATAATATGGATTCCAAACATTCATGATCATCTTCGAAGAATTTTTCCTTTTCAATATTTTTCTATTGGAGCTTGTTAATTCTTTCTCAAATGTTTAATATATGTCAAAATCATTGTTTCCCAACATAAACAATTATTTTCTACTAGAAACTAAATGCCCACTGGACTTGACGCCTAGTTTTGTCTCTCTATAAAGTTGATGTGTTTGGTATTTGACCCCTCTTTGGCTTCTAGTAGATAACTCTTGTTTGATAAGGGCCTTCTAACTTGGCATAAAATCAACAGTCAAAACAAAGTTGTTGCCCGAGTGAACTTCTTTTTTCTTTTTGATGAAGTAATATGTTTTTTTAAAAAAACATTAAGGAGATGTATATATACAAGAGGCATAGTTAAGTAACAGATTGACAAAAGAGAGTATTTCTGTCAGCCCCCTATACAAAGTTTTGATCGAAGACTTTGCATATAACCAAGTTAAGACAATTGTAGGAGCTCCAGTCATCCGTGTAAATGATGTGAATCTTGTTAGCGATGCCTTTTGTTTTTACATCACTGACTTATAAAGTTAATCATAAATTTTGTGGTGTCAATTCTATTGGACTTACATCAAAGTAAATAGATCGTGACCCCCCTAACTTGTCGAGTCTTATTCGGTGCACACCTAAACTTGGCATTGGCCTAATTACTCCCATCAACTTGGTAATTTGACTGTCACAACCCCCTTGAACGCTGACATAGGCGCTGCTACATGGAATTCTTTTCTTAATTCATGTAACTTTCTTTAGATAAAATATATTTTTTTCCTTTTTAAGTTTACTAATTATATAAATCATCTTTTCAGAGCCAGTTCTGTAACAAATAAGAAATAACATAAAATGGAACAACAATATTTTGGCTATAAGTTTTTTATTTGGCTAAAGATATTATATTCTAAATAAGGCCAAGACAAGAAGAAATACACCTTTACGAATAATCATTGCATCCAAAAAAGAGAGGAATTAAATTTGATCTAAATATTTTACGTATTTGACCCGAAAATAGAACAATGCACCATTGAAATAAATAGTCTTGGCATGAAACTGAGTTGAGATTGCTAAAGAAGGAAATTAAAACTGGTTTAACTGGTTATTTGTAACGATTAAATGTGAGTCTAGCCGTTGTATGGATCAGCATGCATACTTTTGATACTATCTCAATGTGCTGTAAGTAGAGCTGCTTCATTTATTAAAGAAAACGTAATATTAAGTAAAAGCATCACGACTATTTTGGTCTTGAATAGATTACACCAATGGCATTCTCTTCATTTCTGCTGATACTTGTTCCTTAGGCCAGTTTAAGGTGTTGGATGTTATGGCGTTTCTCATGCTATTCTTTGCTTTAAATTCATGTTCTTTGAGCCTTCTACGTCTTTTACAGAAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATACAAGGTGAGGGATAAATTCTCTTTTTTATTCTAATAATTATGGTTCAAATTGCATTTGATAGAGTGTCGCGTACCTTTTTACAGTTTGCTTGCATAGTGCTATTACAAAGCGCCACAAAATTTTGAAATATGAAGGGGGGTTATGGTGCTGTCCTAAAAAGGATAGTTGCAATTTTCTGCTATTTGTATGACGAAATGATGATTTCCCTTCTCTTAACTGTTTCAGTTTCTTTCTTTTCTTTTTCCCAAAGGCGTTTACTATTTCAGTATCTGTACTTTCTTTACATCAACATAAGAACATTGCTGTCCAATTCCATCATCTGGTGGTTAACGACTCTTCCTTTCAGGCTTGGTGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAACATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTT</genome_strand>
        <mrna_strand>AAAGATTAGCAGTGGAGATTCAG...........................................................................................CTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATAAAAG.......................................................................................................................................................................................................................................................................................................................................................GCTTGGCGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAATATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242638" ref_strand="+" ref_description="SGN-E242638 [cLED-30-A16]">
      <seq>aaagattagcattggagattcagctatcaggacacctactagttctcaagataaacagggttctttcaccaagagctgtatgtctatgaaatcagtacctgaagagaaattagccggtgagtctttcatttccaattgcgctcatttcgtgcgaatcatgattaaattcaacattagtggctcttacaccttgaaagttccatgtcggttctcaatggaacacctcccaaactgcataacagagattgtgcttcagaacttgaaaggagaatgttggactgtaaattcaattccgactgtaaaggtacaaacgctgcacacattctgtggaggatggtcggcatttgtccgggagaatgacattcagatgggagatatctgcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="99144" stop="101594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99333" g_stop="99355" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99447" g_stop="99616" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101101" g_stop="101294" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="387" r_length="194" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E242638" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99333" e_stop="99355"/>
          <exon e_start="99447" e_stop="99616"/>
          <exon e_start="101101" e_stop="101294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTAGCAGTGGAGATTCAGGTAATTTGAAGGACAATTAACTAACTTATTTTAGGTGTCCGTCCTCACACTGAATTTGTATTGAATCCTTTCAACTATCGTGCTCGAACAGCTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTGGTGAGTTCTTCTGCATGTTTTTCCTTTTTATTTATTCTTACTGTCCCAACCTTTTCCATCCCATCAAGTTGCATAATATGGATTCCAAACATTCATGATCATCTTCGAAGAATTTTTCCTTTTCAATATTTTTCTATTGGAGCTTGTTAATTCTTTCTCAAATGTTTAATATATGTCAAAATCATTGTTTCCCAACATAAACAATTATTTTCTACTAGAAACTAAATGCCCACTGGACTTGACGCCTAGTTTTGTCTCTCTATAAAGTTGATGTGTTTGGTATTTGACCCCTCTTTGGCTTCTAGTAGATAACTCTTGTTTGATAAGGGCCTTCTAACTTGGCATAAAATCAACAGTCAAAACAAAGTTGTTGCCCGAGTGAACTTCTTTTTTCTTTTTGATGAAGTAATATGTTTTTTTAAAAAAACATTAAGGAGATGTATATATACAAGAGGCATAGTTAAGTAACAGATTGACAAAAGAGAGTATTTCTGTCAGCCCCCTATACAAAGTTTTGATCGAAGACTTTGCATATAACCAAGTTAAGACAATTGTAGGAGCTCCAGTCATCCGTGTAAATGATGTGAATCTTGTTAGCGATGCCTTTTGTTTTTACATCACTGACTTATAAAGTTAATCATAAATTTTGTGGTGTCAATTCTATTGGACTTACATCAAAGTAAATAGATCGTGACCCCCCTAACTTGTCGAGTCTTATTCGGTGCACACCTAAACTTGGCATTGGCCTAATTACTCCCATCAACTTGGTAATTTGACTGTCACAACCCCCTTGAACGCTGACATAGGCGCTGCTACATGGAATTCTTTTCTTAATTCATGTAACTTTCTTTAGATAAAATATATTTTTTTCCTTTTTAAGTTTACTAATTATATAAATCATCTTTTCAGAGCCAGTTCTGTAACAAATAAGAAATAACATAAAATGGAACAACAATATTTTGGCTATAAGTTTTTTATTTGGCTAAAGATATTATATTCTAAATAAGGCCAAGACAAGAAGAAATACACCTTTACGAATAATCATTGCATCCAAAAAAGAGAGGAATTAAATTTGATCTAAATATTTTACGTATTTGACCCGAAAATAGAACAATGCACCATTGAAATAAATAGTCTTGGCATGAAACTGAGTTGAGATTGCTAAAGAAGGAAATTAAAACTGGTTTAACTGGTTATTTGTAACGATTAAATGTGAGTCTAGCCGTTGTATGGATCAGCATGCATACTTTTGATACTATCTCAATGTGCTGTAAGTAGAGCTGCTTCATTTATTAAAGAAAACGTAATATTAAGTAAAAGCATCACGACTATTTTGGTCTTGAATAGATTACACCAATGGCATTCTCTTCATTTCTGCTGATACTTGTTCCTTAGGCCAGTTTAAGGTGTTGGATGTTATGGCGTTTCTCATGCTATTCTTTGCTTTAAATTCATGTTCTTTGAGCCTTCTACGTCTTTTACAGAAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATT</genome_strand>
        <mrna_strand>AAAGATTAGCATTGGAGATTCAG...........................................................................................CTATCAGGACACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGGTGAGTCTTTCATTTCCAATTGCGCTCATTTCGTGCGAATCATGATTAAATTCAACATTAGTGGCTCTTACACCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCATAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATTCAGATGGGAGATATCTGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368551" ref_strand="+" ref_description="SGN-E368551 [TUS-23-B10](-)">
      <seq>ttcatttccaatttccctcatttcgtgcgaatcataaaaaaattcaacattagtggctcttacaccttgaaagttccatgtcggttctcaatggaacacctcccaaactgcagaacagagattgtgcttcagaacttgaaaggagaatgttggactgtaaattcaattccgactgtaaaggtacaaacgctgcacacattctgtggaggatggtcggcatttgtccgggagaatgacatccagatgggagatatctgcatatttgagctcattgggaaatatgaaatgcgtgtacatgtatgtgcaattgggaagaaggggttagattaccaaaatgggacagctcctaaagagtcggatatccttgcttccttgacaagctagagacctttggtgtgaaacactgtaggaaagattacttcttgcgtaataaaaggcttggcgtttcactggaagataacgaaacttgaatacatgggatcagaaaaggtacacatatcaatgttatggagaagcacttgagtagattatcaaatatttgactaggttggccatatgccttcagtagcttagatgttttgttgttggcattgtctgagcactcttttcagactgtgttgtataagtactgccagaaaagcttctcattttcttgatgtaaataagtgtgtttttagttcaattgtcctgaaacaatctgctgtttggtctgtatatgtataaacagtaatcagacagaacatcttctagaatgagaaattaaagtttcactctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="99248" stop="102451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99548" g_stop="99616" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101101" g_stop="101467" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="436" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101468" i_stop="101810" i_length="343">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101811" g_stop="102160" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="784" r_length="348" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E368551" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99548" e_stop="99616"/>
          <exon e_start="101101" e_stop="101467"/>
          <exon e_start="101811" e_stop="102160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTGGTGAGTTCTTCTGCATGTTTTTCCTTTTTATTTATTCTTACTGTCCCAACCTTTTCCATCCCATCAAGTTGCATAATATGGATTCCAAACATTCATGATCATCTTCGAAGAATTTTTCCTTTTCAATATTTTTCTATTGGAGCTTGTTAATTCTTTCTCAAATGTTTAATATATGTCAAAATCATTGTTTCCCAACATAAACAATTATTTTCTACTAGAAACTAAATGCCCACTGGACTTGACGCCTAGTTTTGTCTCTCTATAAAGTTGATGTGTTTGGTATTTGACCCCTCTTTGGCTTCTAGTAGATAACTCTTGTTTGATAAGGGCCTTCTAACTTGGCATAAAATCAACAGTCAAAACAAAGTTGTTGCCCGAGTGAACTTCTTTTTTCTTTTTGATGAAGTAATATGTTTTTTTAAAAAAACATTAAGGAGATGTATATATACAAGAGGCATAGTTAAGTAACAGATTGACAAAAGAGAGTATTTCTGTCAGCCCCCTATACAAAGTTTTGATCGAAGACTTTGCATATAACCAAGTTAAGACAATTGTAGGAGCTCCAGTCATCCGTGTAAATGATGTGAATCTTGTTAGCGATGCCTTTTGTTTTTACATCACTGACTTATAAAGTTAATCATAAATTTTGTGGTGTCAATTCTATTGGACTTACATCAAAGTAAATAGATCGTGACCCCCCTAACTTGTCGAGTCTTATTCGGTGCACACCTAAACTTGGCATTGGCCTAATTACTCCCATCAACTTGGTAATTTGACTGTCACAACCCCCTTGAACGCTGACATAGGCGCTGCTACATGGAATTCTTTTCTTAATTCATGTAACTTTCTTTAGATAAAATATATTTTTTTCCTTTTTAAGTTTACTAATTATATAAATCATCTTTTCAGAGCCAGTTCTGTAACAAATAAGAAATAACATAAAATGGAACAACAATATTTTGGCTATAAGTTTTTTATTTGGCTAAAGATATTATATTCTAAATAAGGCCAAGACAAGAAGAAATACACCTTTACGAATAATCATTGCATCCAAAAAAGAGAGGAATTAAATTTGATCTAAATATTTTACGTATTTGACCCGAAAATAGAACAATGCACCATTGAAATAAATAGTCTTGGCATGAAACTGAGTTGAGATTGCTAAAGAAGGAAATTAAAACTGGTTTAACTGGTTATTTGTAACGATTAAATGTGAGTCTAGCCGTTGTATGGATCAGCATGCATACTTTTGATACTATCTCAATGTGCTGTAAGTAGAGCTGCTTCATTTATTAAAGAAAACGTAATATTAAGTAAAAGCATCACGACTATTTTGGTCTTGAATAGATTACACCAATGGCATTCTCTTCATTTCTGCTGATACTTGTTCCTTAGGCCAGTTTAAGGTGTTGGATGTTATGGCGTTTCTCATGCTATTCTTTGCTTTAAATTCATGTTCTTTGAGCCTTCTACGTCTTTTACAGAAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATACAAGGTGAGGGATAAATTCTCTTTTTTATTCTAATAATTATGGTTCAAATTGCATTTGATAGAGTGTCGCGTACCTTTTTACAGTTTGCTTGCATAGTGCTATTACAAAGCGCCACAAAATTTTGAAATATGAAGGGGGGTTATGGTGCTGTCCTAAAAAGGATAGTTGCAATTTTCTGCTATTTGTATGACGAAATGATGATTTCCCTTCTCTTAACTGTTTCAGTTTCTTTCTTTTCTTTTTCCCAAAGGCGTTTACTATTTCAGTATCTGTACTTTCTTTACATCAACATAAGAACATTGCTGTCCAATTCCATCATCTGGTGGTTAACGACTCTTCCTTTCAGGCTTGGTGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAACATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGACTCTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTACTGGATCAC</genome_strand>
        <mrna_strand>TTCATTTCCAATTTCCCTCATTTCGTGCGAATCATAAAAAAATTCAACATTAGTGGCTCTTACACCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATAAAAG.......................................................................................................................................................................................................................................................................................................................................................GCTTGGCGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAATATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGA--CTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395602" ref_strand="+" ref_description="SGN-E395602 [TUS-16-H8](-)">
      <seq>caatggaacacctcccaaactgcagaacagagattgtgcttcagaacttgaaaggagaatgttggactgtaaattcaattccgactgtaaaggtacaaacgctgcacacattctgtggaggatggtcggcatttgtccgggagaatgacatccagatgggagatatctgcatatttgagctcattgggaaatatgaaatgcgtgtacatgtatgtgcaattgggaagaaggggttagattaccaaaatgggacagctcctaaagagtcggatatccttgcttccttgacaagctagagacctttggtgtgaaacactgtaggaaagattacttcttgcgtaataaaaggcttggcgtttcactggaagataacgaaacttgaatacatgggatcagaaaaggtacacatatcaatgttatggagaagcacttgagtagattatcaaatatttgactaggttggccatatgccttcagtagcttagatgttttgttgttggcattgtctgagcactcttttcagactgtgttgtataagtactgccagaaaagcttctcattttcttgatgtaaataagtgtgtttttagttcaattgtcctgaaacaatctgctgtttggtctgtatatgtataaacagtaatcagacagaacatcttctagaatgagaaattaaagtttcactctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="100820" stop="102451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101120" g_stop="101467" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101468" i_stop="101810" i_length="343">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101811" g_stop="102160" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="696" r_length="348" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E395602" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101120" e_stop="101467"/>
          <exon e_start="101811" e_stop="102160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATACAAGGTGAGGGATAAATTCTCTTTTTTATTCTAATAATTATGGTTCAAATTGCATTTGATAGAGTGTCGCGTACCTTTTTACAGTTTGCTTGCATAGTGCTATTACAAAGCGCCACAAAATTTTGAAATATGAAGGGGGGTTATGGTGCTGTCCTAAAAAGGATAGTTGCAATTTTCTGCTATTTGTATGACGAAATGATGATTTCCCTTCTCTTAACTGTTTCAGTTTCTTTCTTTTCTTTTTCCCAAAGGCGTTTACTATTTCAGTATCTGTACTTTCTTTACATCAACATAAGAACATTGCTGTCCAATTCCATCATCTGGTGGTTAACGACTCTTCCTTTCAGGCTTGGTGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAACATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGACTCTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTACTGGATCAC</genome_strand>
        <mrna_strand>CAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATAAAAG.......................................................................................................................................................................................................................................................................................................................................................GCTTGGCGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAATATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGA--CTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245742" ref_strand="+" ref_description="SGN-E245742 [cLEF-48-M22]">
      <seq>gctgctttcacaaacggaggagcgactatggatatttttttgattgttatcatggtagctagttcctctgtttttttcttctttcttcgcaaacatgctttctcagcgaaaatacatagtaaaagtaaaagagtacctggagctggcggagcatggcctattatcggtcatcttcaccttttgagtggatccgaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123780" stop="124916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124080" g_stop="124616" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E245742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124080" e_stop="124616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTTTCACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGT</genome_strand>
        <mrna_strand>GCTGCTTTCACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303279" ref_strand="+" ref_description="SGN-E303279 [cLEX-5-F14]">
      <seq>gcacgaggacggaggagcgactatggatattatgttgattgttatcatggtagctagttcctctgtttttttcttatttcttcgcaaacatgctttctcagcgaaaatacatagtaaaagtaaaagagtacctggagctggcggagcatggcctattatcggtcatcttcaccttctgagtggatcccaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtacttgtgagcgatcccaaattagccaaagaatgattcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123793" stop="124895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124085" g_stop="124595" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E303279" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124085" e_stop="124595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCA</genome_strand>
        <mrna_strand>GCACGAGGACGGAGGAGCGACTATGGATATTATGTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTATTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTCTGAGTGGATCCCAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTACTTGTGAGCGATCCCAAATTAGCCAAAGAATGATTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209646" ref_strand="+" ref_description="SGN-E209646 [cLEC-54-L13]">
      <seq>acaaacggaggagcgactatggatatttttttgattgttatcatggtagctagttcctctgtttttttcttctttcttcgcaaacatgctttctcagcgaaaatacatagtaaaagtaaaagagtacctggagctggcggagcatggcctattatcggtcatcttcaccttttgagtggatccgaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgggatgcttaaacacatcagagaatttgaggtaaaatcaggtatttaaagagatttatagtaaattggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123789" stop="124925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124089" g_stop="124625" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E209646" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124089" e_stop="124625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTA-TTAAAGAGATTTATAGT-GATTGGGGG</genome_strand>
        <mrna_strand>ACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGGGATGCTTAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTTAAAGAGATTTATAGTAAATTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706659" ref_strand="+" ref_description="SGN-E706659 [FA30CC10]">
      <seq>ctagttcctctgtttttttcttctttcttcgcaaacatgctttctcagcgaaaatacatagtaaaagtaagagagtacctggagctggcggagcatggcctattatcggtcatcttcaccttttgagtggatccgaaacagatcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaagttagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttgtgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggttaaatcaggtattacagagatttataataattgggggaagaataatttaaatggttttgtgaaggtggagatgaaggaatggattggggatttagttatgaacactatggggaaaatattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123838" stop="125013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124138" g_stop="124713" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E706659" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124138" e_stop="124713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCG</genome_strand>
        <mrna_strand>CTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAGAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGATCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAGTTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTGTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTTAAATCAGGTATTACAGAGATTTATAATAATTGGGGGAAGAATAATTTAAATGGTTTTGTGAAGGTGGAGATGAAGGAATGGATTGGGGATTTAGTTATGAACACTATGGGGAAAATATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369497" ref_strand="+" ref_description="SGN-E369497 [TUS-23-I15]">
      <seq>tttctcagcgaaaatacatagtaaaagtaaaagagtacctggagctggcggagcatggcctattatcggtcatcttcaccttttgagtggatccgaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagtaattgggggaagaataatttaaatggtgttgtgaagatggagatgaaggaatggattggagatttagttatgaatactatggggaaaatattattcggaaaagggcgaaggagtaatgaggacgaaggaataaataaagctcacaaagcaattcgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttatttaagatggctcgacattggaggccatgagaaagcgatgaaggaggtttctaaagaaatggactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123878" stop="125190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124178" g_stop="124890" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E369497" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124178" e_stop="124890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTG</genome_strand>
        <mrna_strand>TTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTAATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTCGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246195" ref_strand="+" ref_description="SGN-E246195 [cLEF-40-B18]">
      <seq>gaaaatacatagtataagtaaaagagtacctggagctggcggagcgtggcctattatcggtcatcttcaccttttgagtggatccgaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagtaattgggggaagaataatttaaatggtgttgtgaagatggagatgaaggaatggattggagatttaattatgaatactatggggaaaatattattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123887" stop="125013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124187" g_stop="124713" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E246195" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124187" e_stop="124713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCG</genome_strand>
        <mrna_strand>GAAAATACATAGTATAAGTAAAAGAGTACCTGGAGCTGGCGGAGCGTGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTAATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAATTATGAATACTATGGGGAAAATATTATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738171" ref_strand="+" ref_description="SGN-E738171 [LC12CF04]">
      <seq>ctcctttattctacttttcgttcttcataaacaattttactcagttaaaaagcagagtagtagtagtagaaaggtacctgaagctggcggagcatggcctattatcggccatctccaccttctcggtggatctgaatctgatcacttgcctcacaaaatgttgggccgcttggcagataagtacgggcctattttcggaatgaagcttggagttcatcaggttgtagttgtgagtgatcacaaattagcaacagagtgcttcacaactaacgatttagccctagcaggtcggcctaaatcaatggcttcagagattataggctacaaacatgctatgtttggactttgttcttacggtccgtactggagagaaacaaggaaaattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttataataattgggggaagaataatgtaaatggttttgtaaagatggagatgaaggaatggattggggatttatttatgaacactatggggaaaatattattcggaaaagggcgaaggagtaacgaggacgaaggaataaataaagctcacaaagcaattagaagatttttcgaattgttaggagtttttgttgtggctgattttttaccttatttaagatggctggacattggaggccatgagaaagcgatgaaggaggtttctaaagaaatggactctgttgttgaagaatggttaacagagcacaaaacgaagagacgaattattaaatctggtgaagaagaagatttcatggatgtaatgctttccgtttgtgaagacagagatctacctggagttgatgccgataccgctatcaaagctacatgtatggctctgctatcggcaggcacagacacaacgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123888" stop="125349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124213" g_stop="125042" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="904" r_length="830" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125043" i_stop="125128" i_length="86">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125129" g_stop="125163" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="939" r_length="35" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E738171" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124213" e_stop="125042"/>
          <exon e_start="125129" e_stop="125163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATGGTACGTTTGTTCATTATCTGCTAAAAGTTACTATTTCAAAGCAGATTACTGAATATATATATATATATATATGTTGAATTTGTCAGGGTCTACTATCGGCAGGTACAGACACCACCATCGT</genome_strand>
        <mrna_strand>TACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAACAGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGGGAAGAATAATGTAAATGGTTTTGTAAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTAGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGACGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACATGTATG......................................................................................GCTCTGCTATCGGCAGGCACAGACACAACGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336652" ref_strand="+" ref_description="SGN-E336652 [cTOE-4-P23]">
      <seq>caattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagtaattgggggaagaataatttaaatggtgttgtgaagatggagatgaaggaatggattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="123981" stop="124977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124281" g_stop="124677" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E336652" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124281" e_stop="124677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAG</genome_strand>
        <mrna_strand>CAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTAATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205521" ref_strand="+" ref_description="SGN-E205521 [cLEC-28-N5]">
      <seq>acaaaacgttgagccgcatggcagataagtacgggccgatattcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagtcaaagaatgcttcacaactaacgatttagccctagccaaccggcctaaatccatggtttcagagattataggctacaaagacgctatgtttggactttgttcttacggtccttactggagagaaacaaggaaaattgccacaattgaacttttctcatctcggcgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcatctgttgaagagatttataataattgggggaagaataatttaaatggttttgtgaagatggagatgaaggaatggattggagatttagttatgaacactatggggaaaatattattcggaaaagggcgaaggagtaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="124000" stop="125035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124291" g_stop="124735" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E205521" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124291" e_stop="124735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGA</genome_strand>
        <mrna_strand>ACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTAGCCAACCGGCCTAAATCCATGGTTTCAGAGATTATAGGCTACAAAGACGCTATGTTTGGACTTTGTTCTTACGGTCCTTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCATCTCGGCGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCATCTGTTGAAGAGATTTATAATAATTGGGGGAAGAATAATTTAAATGGTTTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331810" ref_strand="+" ref_description="SGN-E331810 [cTOD-7-I20]">
      <seq>tttagttatgaatactatggggaaaatattattcggaaaagggcgaaggagtaatgaggacgaaggaataaataaagctcacaaagcaattcgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttatttaagatggctcgacattggaggccatgagaaagcgatgaaggaggtttctaaagaaatggactctgttgttgaagaatggttaacggagcacaaaacaaagagaggaattatcaaatctggtgaagaagaagatttcatggatgtcatgctttccatttgtgaagacagagatctgcctggttttgatgccgatactgctataaaagctaattgcatgggtctactatcggcaggtacagacaccaccatcgtaactttaacatgggctttatgtttactcttgaacaactacgaagcactaaaaaaggctcaagatgagctagacgctcatgtcggcaacaacagatgggtccaagaatcggatatcaagaacttggtttatcttcaagctattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="124379" stop="125608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124679" g_stop="125042" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125043" i_stop="125128" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125129" g_stop="125308" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="544" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E331810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124679" e_stop="125042"/>
          <exon e_start="125129" e_stop="125308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATGGTACGTTTGTTCATTATCTGCTAAAAGTTACTATTTCAAAGCAGATTACTGAATATATATATATATATATATGTTGAATTTGTCAGGGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTC</genome_strand>
        <mrna_strand>TTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTCGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATG......................................................................................GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697642" ref_strand="+" ref_description="SGN-E697642 [FA03CG03]">
      <seq>ggagtaatgaggacgaaggaataaataaggctcacatagcaattcgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttatttaagatggctggacattggaggccatgagaaagcgatgaaagagatttctgaagaaatggactctgttgttgaagaatggttaacagagcacaaaacaaagagaggaattattaaatctggtgaagaagaagatttcatggatgtaatgctttccaaatgtgaagacagagatctgcctggatttgatgccgatactgctataaaagctaattgcatgggtctactatcggcaggtacagacaccaccatcgtaactttaacatgggctttatgtttactcttgaacaactacgaagcactaaaaaaggctcaagatgagctagacgctcatgttggcaagaatagatgggtccaagaatcggatatcaagaacttggtttatcttcaacctgttgtcaaagaagtattacgtttatatccagctgggccgctctctgtaccacacgagtcaagggaggattgtgttattgggggatacgatataccaaaagggactcgcttattagtgaacttatggaagattcagcacgatcctaatatatggccaaatcctcacgagtttaagccagagaggttcttgtcgacccacaaggatgtggatgtaaagggaaatcactttgagttaatgccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="124426" stop="125699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124726" g_stop="125042" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125043" i_stop="125128" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125129" g_stop="125546" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="735" r_length="418" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E697642" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124726" e_stop="125042"/>
          <exon e_start="125129" e_stop="125546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATGGTACGTTTGTTCATTATCTGCTAAAAGTTACTATTTCAAAGCAGATTACTGAATATATATATATATATATATGTTGAATTTGTCAGGGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTCAAAGAAGTATTACGTTTATATCCAGCTGGACCGCTCTCTGTACCACACGAGTCAATGGAGGATTGTGTCATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTCGATGTAAAGGGAAATCACTTTGAGTTAATGCCATTTG</genome_strand>
        <mrna_strand>GGAGTAATGAGGACGAAGGAATAAATAAGGCTCACATAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAAGAGATTTCTGAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCAAATGTGAAGACAGAGATCTGCCTGGATTTGATGCCGATACTGCTATAAAAGCTAATTGCATG......................................................................................GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAACCTGTTGTCAAAGAAGTATTACGTTTATATCCAGCTGGGCCGCTCTCTGTACCACACGAGTCAAGGGAGGATTGTGTTATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTGGATGTAAAGGGAAATCACTTTGAGTTAATGCCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248720" ref_strand="+" ref_description="SGN-E248720 [cLEF-58-M8]">
      <seq>acgaaggaataaataaagctcacaaagcaattcgaagatttttcgaattgttaggagtttttgttgtggctgattttttaccttatttaagatggctcgacattggaggccatgagaaagcgatgaaggaggtttctcaagaaatggactctgttgttgaagaatggttaacagagcacaaaacgaagagaggaattattaaatctggtgaagaagaagatttcatggatctaatgctttccgtttgtgaagacagagatctacctggagttgatgccgataccgctatcaaagctacatgctctgctatcggcaggcacagacacaacgatggtaactctaacatggattttatctctactactcaacaactatcaatcacttcaaaaggctcaagatgagctagacgctcatgttggcaagaatagatgggtccaagaatccgatataaaaaacttagtttatcttcaagctattgttaaagaagcattacgtttatatccagctggaccgctctctttaccacacgagtcgatggaggattgtactatcagtgggtatgatataccaaaaggcactcgcttattagtgaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107D06-ANm83/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107D06.1" temp_strand="+" temp_description="C04HBa0107D06.1  CU914524.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107D06 sequenced_by:sanger upload_account_name:uk">
        <position start="124438" stop="125699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124738" g_stop="125037" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125038" i_stop="125128" i_length="91">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125129" g_stop="125425" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="597" r_length="297" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107D06.1" gen_strand="+" ref_id="SGN-E248720" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124738" e_stop="125037"/>
          <exon e_start="125129" e_stop="125425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATGGTACGTTTGTTCATTATCTGCTAAAAGTTACTATTTCAAAGCAGATTACTGAATATATATATATATATATATGTTGAATTTGTCAGGGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTCAAAGAAGTATTACGTTTATATCCAGCTGGACCGCTCTCTGTACCACACGAGTCAATGGAGGATTGTGTCATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTA</genome_strand>
        <mrna_strand>ACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTCGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTCAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATCTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACAT...........................................................................................GCTCTGCTATCGGCAGGCACAGACACAACGATGGTAACTCTAACATGGATTTTATCTCTACTACTCAACAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCCGATATAAAAAACTTAGTTTATCTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGGACCGCTCTCTTTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTATTAGTGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>116</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3402" PGL_stop="2064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3402" e_stop="3287"/>
            <exon e_start="3061" e_stop="2840"/>
            <exon e_start="2712" e_stop="2615"/>
            <exon e_start="2448" e_stop="2064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3402" e_stop="3287" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3286" i_stop="3062" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="3061" e_stop="2840" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="2839" i_stop="2713" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2712" e_stop="2615" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="2614" i_stop="2449" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2448" e_stop="2064" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3402" stop="3287"/>
              <exon start="3061" stop="2840"/>
              <exon start="2712" stop="2615"/>
              <exon start="2448" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3401" stop="3287"/>
              <exon start="3061" stop="2840"/>
              <exon start="2712" stop="2615"/>
              <exon start="2448" stop="2400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3396" stop="3287"/>
              <exon start="3061" stop="2840"/>
              <exon start="2712" stop="2615"/>
              <exon start="2448" stop="2073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3024" stop="2840"/>
              <exon start="2712" stop="2615"/>
              <exon start="2448" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTTTGCGCAAAGATGCCAATCCAGAGCTTGCCTTAGCTGTTGATATATGGAGCCTGGGCTGTACTGTTATTGAGATGTTTACTGGACAGCCCCCTTGGGGCGAACTTAGTTGG : GTGCAAGCAATGTTCGGTGTCTTGAACAAATCACCACCTATACCAGAAAAATTATCATCAGAAGGAAAGGATTTCCTTCAGTGCTGCTTTCGGAGGAAACCTGCAGATAGGCCATCAGCTATGACGCTACTTGAACATGCTTTTTTACGTAGTACTAGTTCCCTTGAGCATAGTATCAATGTTGCTGGTTGCTCAGAGGATTCTCCGGGGAAGAAATTCCAT : GATACCCTGAGTCCTAAGAACCCAATCAACCCCAAAAAGGAACAAAAACCACTGTTACCAGGAACATCTGGCAGGCAAGCAAAATCACCATGTAGCAG : TGAAACTTGCCGGCAAACTCAACCTGAAACCTGTGAATATGGAGCAACTTCTCACCATTCTCCACGTTCTGCACTTGAAGTCTTTCCCTGTATTACTTCAATGGAGCTGAACTCGAGTTCACGTGCAGCCAGCCCCTCAAGCGTTCCTAGTAGCTTTCGCCTGGGACCTGAAAACAGAAGTCCTTATAGAATCATAGGGAAGGAAATTCCAAACCTCTGTATAAGATCATAAATGAATGGAGAGGAGGGAAATTCATGTACAGATCAGGAGAATTAGATACAGAAAACTTCAGTTGGATGATTAGTCAAAATGTTGCCATATGTAATATTCATGTTGTATTTGAAGGCATACATATCTTTATAACATATTCATGAAGAATTGAAG</gDNA_template>
            <first_frame> L  F  C  A  K  M  P  I  Q  S  L  P  *  L  L  I  Y  G  A  W  A  V  L  L  L  R  C  L  L  D  S  P  L  G  A  N  L  V  G :   C  K  Q  C  S  V  S  *  T  N  H  H  L  Y  Q  K  N  Y  H  Q  K  E  R  I  S  F  S  A  A  F  G  G  N  L  Q  I  G  H  Q  L  *  R  Y  L  N  M  L  F  Y  V  V  L  V  P  L  S  I  V  S  M  L  L  V  A  Q  R  I  L  R  G  R  N  S  M :   I  P  *  V  L  R  T  Q  S  T  P  K  R  N  K  N  H  C  Y  Q  E  H  L  A  G  K  Q  N  H  H  V  A   : V  K  L  A  G  K  L  N  L  K  P  V  N  M  E  Q  L  L  T  I  L  H  V  L  H  L  K  S  F  P  V  L  L  Q  W  S  *  T  R  V  H  V  Q  P  A  P  Q  A  F  L  V  A  F  A  W  D  L  K  T  E  V  L  I  E  S  *  G  R  K  F  Q  T  S  V  *  D  H  K  *  M  E  R  R  E  I  H  V  Q  I  R  R  I  R  Y  R  K  L  Q  L  D  D  *  S  K  C  C  H  M  *  Y  S  C  C  I  *  R  H  T  Y  L  Y  N  I  F  M  K  N  *   </first_frame>
            <second_frame>  C  F  A  Q  R  C  Q  S  R  A  C  L  S  C  *  Y  M  E  P  G  L  Y  C  Y  *  D  V  Y  W  T  A  P  L  G  R  T  *  L   : G  A  S  N  V  R  C  L  E  Q  I  T  T  Y  T  R  K  I  I  I  R  R  K  G  F  P  S  V  L  L  S  E  E  T  C  R  *  A  I  S  Y  D  A  T  *  T  C  F  F  T  *  Y  *  F  P  *  A  *  Y  Q  C  C  W  L  L  R  G  F  S  G  E  E  I  P   : *  Y  P  E  S  *  E  P  N  Q  P  Q  K  G  T  K  T  T  V  T  R  N  I  W  Q  A  S  K  I  T  M  *  Q  :  *  N  L  P  A  N  S  T  *  N  L  *  I  W  S  N  F  S  P  F  S  T  F  C  T  *  S  L  S  L  Y  Y  F  N  G  A  E  L  E  F  T  C  S  Q  P  L  K  R  S  *  *  L  S  P  G  T  *  K  Q  K  S  L  *  N  H  R  E  G  N  S  K  P  L  Y  K  I  I  N  E  W  R  G  G  K  F  M  Y  R  S  G  E  L  D  T  E  N  F  S  W  M  I  S  Q  N  V  A  I  C  N  I  H  V  V  F  E  G  I  H  I  F  I  T  Y  S  *  R  I  E  </second_frame>
            <third_frame>   V  L  R  K  D  A  N  P  E  L  A  L  A  V  D  I  W  S  L  G  C  T  V  I  E  M  F  T  G  Q  P  P  W  G  E  L  S  W  :  V  Q  A  M  F  G  V  L  N  K  S  P  P  I  P  E  K  L  S  S  E  G  K  D  F  L  Q  C  C  F  R  R  K  P  A  D  R  P  S  A  M  T  L  L  E  H  A  F  L  R  S  T  S  S  L  E  H  S  I  N  V  A  G  C  S  E  D  S  P  G  K  K  F  H  :  D  T  L  S  P  K  N  P  I  N  P  K  K  E  Q  K  P  L  L  P  G  T  S  G  R  Q  A  K  S  P  C  S  S :   E  T  C  R  Q  T  Q  P  E  T  C  E  Y  G  A  T  S  H  H  S  P  R  S  A  L  E  V  F  P  C  I  T  S  M  E  L  N  S  S  S  R  A  A  S  P  S  S  V  P  S  S  F  R  L  G  P  E  N  R  S  P  Y  R  I  I  G  K  E  I  P  N  L  C  I  R  S  *  M  N  G  E  E  G  N  S  C  T  D  Q  E  N  *  I  Q  K  T  S  V  G  *  L  V  K  M  L  P  Y  V  I  F  M  L  Y  L  K  A  Y  I  S  L  *  H  I  H  E  E  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3400" stop="3287"/>
                    <exon start="3061" stop="2840"/>
                    <exon start="2712" stop="2615"/>
                    <exon start="2448" stop="2217"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRKDANPELALAVDIWSLGCTVIEMFTGQPPWGELSWVQAMFGVLNKSPPIPEKLSSEGKDFLQCCFRRKPADRPSAMTLLEHAFLRSTSSLEHSINVAGCSEDSPGKKFHDTLSPKNPINPKKEQKPLLPGTSGRQAKSPCSSETCRQTQPETCEYGATSHHSPRSALEVFPCITSMELNSSSRAASPSSVPSSFRLGPENRSPYRIIGKEIPNLCIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6441" PGL_stop="5063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6441" e_stop="6320"/>
            <exon e_start="5606" e_stop="5063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.072" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6441" e_stop="6320" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.072">
            <gDNA_intron_boundary i_start="6319" i_stop="5607" i_length="713"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="5606" e_stop="5063" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6441" stop="6320"/>
              <exon start="5606" stop="5063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6441" stop="6320"/>
              <exon start="5606" stop="5073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6440" stop="6320"/>
              <exon start="5606" stop="5220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTGCTGTGCCACTGCCGTTGCCGCTCCCGGAGCTCAATTCTCTGCCTAAACAGAACTCGGTTCACTCTAATTTGCCGGTTAGAGTTGACAGGGAGCTTTTAAGTCCTCCTCTTGCCAG : GGAAACTTTTGATCGAACTCCAGCTGAGGTGAAAAGTTCTCAGCATCCAAGGTCATCTACTCCAACTTATCGGCGTAGGGGTTTCCCTCAGGATCTGAACGCCGAGGGTGTTGAATTCAGGTTGAACGTTCCTGCTAGAAGTGCCCCAAGTAGTGGTTTTACAAGCCCTGTCCGAAGCCCAAAAAGGTTTAGCACGCAGGACCTTTTTCATCATCCATTGCATCAGGCCTCATCATCACCTTCAGAGGCTTACGCTTTCCAACTTTCACCCACAAGGGTTATAAATAGCGCTGATCATTCTCCAGTGAGTAGCCCAATTTTACCAAGTTCAGCTAACAGAATCAGGAACAGCAAAAGTGTTGCTTTGCATTCACATCATAAATCTCTTCCGGAAAGTTCTCTAGGTTGGAATGAAGCTAACAACAACAATGTGCATCCACTACCCCTTCCACCAGGAGTTCCACGACAACCAGAATTATGTACCATGCACAGCAATATGGATAAACCTTGTGTATCACCAACAAAGGGTCAATGGCTAAAGGGG</gDNA_template>
            <first_frame> S  S  A  V  P  L  P  L  P  L  P  E  L  N  S  L  P  K  Q  N  S  V  H  S  N  L  P  V  R  V  D  R  E  L  L  S  P  P  L  A  R :   E  T  F  D  R  T  P  A  E  V  K  S  S  Q  H  P  R  S  S  T  P  T  Y  R  R  R  G  F  P  Q  D  L  N  A  E  G  V  E  F  R  L  N  V  P  A  R  S  A  P  S  S  G  F  T  S  P  V  R  S  P  K  R  F  S  T  Q  D  L  F  H  H  P  L  H  Q  A  S  S  S  P  S  E  A  Y  A  F  Q  L  S  P  T  R  V  I  N  S  A  D  H  S  P  V  S  S  P  I  L  P  S  S  A  N  R  I  R  N  S  K  S  V  A  L  H  S  H  H  K  S  L  P  E  S  S  L  G  W  N  E  A  N  N  N  N  V  H  P  L  P  L  P  P  G  V  P  R  Q  P  E  L  C  T  M  H  S  N  M  D  K  P  C  V  S  P  T  K  G  Q  W  L  K  G </first_frame>
            <second_frame>  P  L  L  C  H  C  R  C  R  S  R  S  S  I  L  C  L  N  R  T  R  F  T  L  I  C  R  L  E  L  T  G  S  F  *  V  L  L  L  P   : G  K  L  L  I  E  L  Q  L  R  *  K  V  L  S  I  Q  G  H  L  L  Q  L  I  G  V  G  V  S  L  R  I  *  T  P  R  V  L  N  S  G  *  T  F  L  L  E  V  P  Q  V  V  V  L  Q  A  L  S  E  A  Q  K  G  L  A  R  R  T  F  F  I  I  H  C  I  R  P  H  H  H  L  Q  R  L  T  L  S  N  F  H  P  Q  G  L  *  I  A  L  I  I  L  Q  *  V  A  Q  F  Y  Q  V  Q  L  T  E  S  G  T  A  K  V  L  L  C  I  H  I  I  N  L  F  R  K  V  L  *  V  G  M  K  L  T  T  T  M  C  I  H  Y  P  F  H  Q  E  F  H  D  N  Q  N  Y  V  P  C  T  A  I  W  I  N  L  V  Y  H  Q  Q  R  V  N  G  *  R   </second_frame>
            <third_frame>   L  C  C  A  T  A  V  A  A  P  G  A  Q  F  S  A  *  T  E  L  G  S  L  *  F  A  G  *  S  *  Q  G  A  F  K  S  S  S  C  Q  :  G  N  F  *  S  N  S  S  *  G  E  K  F  S  A  S  K  V  I  Y  S  N  L  S  A  *  G  F  P  S  G  S  E  R  R  G  C  *  I  Q  V  E  R  S  C  *  K  C  P  K  *  W  F  Y  K  P  C  P  K  P  K  K  V  *  H  A  G  P  F  S  S  S  I  A  S  G  L  I  I  T  F  R  G  L  R  F  P  T  F  T  H  K  G  Y  K  *  R  *  S  F  S  S  E  *  P  N  F  T  K  F  S  *  Q  N  Q  E  Q  Q  K  C  C  F  A  F  T  S  *  I  S  S  G  K  F  S  R  L  E  *  S  *  Q  Q  Q  C  A  S  T  T  P  S  T  R  S  S  T  T  T  R  I  M  Y  H  A  Q  Q  Y  G  *  T  L  C  I  T  N  K  G  S  M  A  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6441" stop="6320"/>
                    <exon start="5606" stop="5063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSAVPLPLPLPELNSLPKQNSVHSNLPVRVDRELLSPPLARETFDRTPAEVKSSQHPRSSTPTYRRRGFPQDLNAEGVEFRLNVPARSAPSSGFTSPVRSPKRFSTQDLFHHPLHQASSSPSEAYAFQLSPTRVINSADHSPVSSPILPSSANRIRNSKSVALHSHHKSLPESSLGWNEANNNNVHPLPLPPGVPRQPELCTMHSNMDKPCVSPTKGQWLKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11047" PGL_stop="14064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11047" e_stop="11440"/>
            <exon e_start="11528" e_stop="11666"/>
            <exon e_start="12942" e_stop="13023"/>
            <exon e_start="13840" e_stop="14064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="0.990"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="0.988"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="11047" e_stop="11440" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11441" i_stop="11527" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11528" e_stop="11666" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11667" i_stop="12941" i_length="1275"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="12942" e_stop="13023" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13024" i_stop="13839" i_length="816"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="13840" e_stop="14064" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11047" stop="11440"/>
              <exon start="11528" stop="11666"/>
              <exon start="12942" stop="13023"/>
              <exon start="13840" stop="14035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11049" stop="11440"/>
              <exon start="11528" stop="11666"/>
              <exon start="12942" stop="13023"/>
              <exon start="13840" stop="14064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11056" stop="11440"/>
              <exon start="11528" stop="11642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAGACTAAAAACACCCGCCGAAAAAAATAAGCTGCCACATTTCCATGGCAGCAGCCGCCTGTTCCTCCGCCGTATTCAAACGGGCAGCTTCAACCGCCGCCCAAATTCTCCGACACCAGCACTTCTCCTCAGCGGCGGCGGCAGCGGAGATTCACCGGCCGGGCGATTTCTACTGTGACGATAGTGAAGGCGAAGAAAGTGCAGTGTATCAGCACACCCTCAAATTTCAACGCCCATCAACGATAAAACAACTTCAGCTTCTCCATAACTCCGTCAGTCTCATAGGAAAAATTGATTACCCATTCAAAAGAGTTAACACTAAAAACGGCTCTTTTGGGGTTCATACTTTACTCAGTGTCTCCGGTTCTTCTCAATCCCGTCCATCTTTTAA : AGTTATGTTGAAGATGTGGGATGAAATGGCGGAAGTGTCAATGGAGCATTTGAAATCAAATGACCTGGTATATGTTTGGGGTCATTTGGGATCATACATCAAGACTGATGAGAATGGTAAACATAAGATGAGATACCAG : GTAGATGTGAAGGAAATAAATTTCGTGACTCCAGATGTTCAAGCCTTAGCGACCCCAGAATTTCAGAAGAAAGAATCAAGAG : GTGAAGATGAATTGGAGAACTACAGGAACCGGATCCAATTGTGGCAAATTTTCTTCGCTAGCCCTTTTGAATGGATGGACTTCAGGAAGAGTAAAGTCAATCCTAAATACCCCGACTTTAAGAACAGAGATACTGGTGAAGTTCTCTGGCTCAGGACAGATGATCCACCATGGATAAAAAGACAGTTGGATATCCTAGATTCAAGATTTTCTTACGAAAGTTTCT</gDNA_template>
            <first_frame> *  E  T  K  N  T  R  R  K  K  *  A  A  T  F  P  W  Q  Q  P  P  V  P  P  P  Y  S  N  G  Q  L  Q  P  P  P  K  F  S  D  T  S  T  S  P  Q  R  R  R  Q  R  R  F  T  G  R  A  I  S  T  V  T  I  V  K  A  K  K  V  Q  C  I  S  T  P  S  N  F  N  A  H  Q  R  *  N  N  F  S  F  S  I  T  P  S  V  S  *  E  K  L  I  T  H  S  K  E  L  T  L  K  T  A  L  L  G  F  I  L  Y  S  V  S  P  V  L  L  N  P  V  H  L  L   : K  L  C  *  R  C  G  M  K  W  R  K  C  Q  W  S  I  *  N  Q  M  T  W  Y  M  F  G  V  I  W  D  H  T  S  R  L  M  R  M  V  N  I  R  *  D  T  R :   *  M  *  R  K  *  I  S  *  L  Q  M  F  K  P  *  R  P  Q  N  F  R  R  K  N  Q  E  :  V  K  M  N  W  R  T  T  G  T  G  S  N  C  G  K  F  S  S  L  A  L  L  N  G  W  T  S  G  R  V  K  S  I  L  N  T  P  T  L  R  T  E  I  L  V  K  F  S  G  S  G  Q  M  I  H  H  G  *  K  D  S  W  I  S  *  I  Q  D  F  L  T  K  V  S </first_frame>
            <second_frame>  K  R  L  K  T  P  A  E  K  N  K  L  P  H  F  H  G  S  S  R  L  F  L  R  R  I  Q  T  G  S  F  N  R  R  P  N  S  P  T  P  A  L  L  L  S  G  G  G  S  G  D  S  P  A  G  R  F  L  L  *  R  *  *  R  R  R  K  C  S  V  S  A  H  P  Q  I  S  T  P  I  N  D  K  T  T  S  A  S  P  *  L  R  Q  S  H  R  K  N  *  L  P  I  Q  K  S  *  H  *  K  R  L  F  W  G  S  Y  F  T  Q  C  L  R  F  F  S  I  P  S  I  F  *  :  S  Y  V  E  D  V  G  *  N  G  G  S  V  N  G  A  F  E  I  K  *  P  G  I  C  L  G  S  F  G  I  I  H  Q  D  *  *  E  W  *  T  *  D  E  I  P   : G  R  C  E  G  N  K  F  R  D  S  R  C  S  S  L  S  D  P  R  I  S  E  E  R  I  K  R :   *  R  *  I  G  E  L  Q  E  P  D  P  I  V  A  N  F  L  R  *  P  F  *  M  D  G  L  Q  E  E  *  S  Q  S  *  I  P  R  L  *  E  Q  R  Y  W  *  S  S  L  A  Q  D  R  *  S  T  M  D  K  K  T  V  G  Y  P  R  F  K  I  F  L  R  K  F   </second_frame>
            <third_frame>   R  D  *  K  H  P  P  K  K  I  S  C  H  I  S  M  A  A  A  A  C  S  S  A  V  F  K  R  A  A  S  T  A  A  Q  I  L  R  H  Q  H  F  S  S  A  A  A  A  A  E  I  H  R  P  G  D  F  Y  C  D  D  S  E  G  E  E  S  A  V  Y  Q  H  T  L  K  F  Q  R  P  S  T  I  K  Q  L  Q  L  L  H  N  S  V  S  L  I  G  K  I  D  Y  P  F  K  R  V  N  T  K  N  G  S  F  G  V  H  T  L  L  S  V  S  G  S  S  Q  S  R  P  S  F  K :   V  M  L  K  M  W  D  E  M  A  E  V  S  M  E  H  L  K  S  N  D  L  V  Y  V  W  G  H  L  G  S  Y  I  K  T  D  E  N  G  K  H  K  M  R  Y  Q  :  V  D  V  K  E  I  N  F  V  T  P  D  V  Q  A  L  A  T  P  E  F  Q  K  K  E  S  R   : G  E  D  E  L  E  N  Y  R  N  R  I  Q  L  W  Q  I  F  F  A  S  P  F  E  W  M  D  F  R  K  S  K  V  N  P  K  Y  P  D  F  K  N  R  D  T  G  E  V  L  W  L  R  T  D  D  P  P  W  I  K  R  Q  L  D  I  L  D  S  R  F  S  Y  E  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11058" stop="11440"/>
                    <exon start="11528" stop="11666"/>
                    <exon start="12942" stop="13023"/>
                    <exon start="13840" stop="14063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHPPKKISCHISMAAAACSSAVFKRAASTAAQILRHQHFSSAAAAAEIHRPGDFYCDDSEGEESAVYQHTLKFQRPSTIKQLQLLHNSVSLIGKIDYPFKRVNTKNGSFGVHTLLSVSGSSQSRPSFKVMLKMWDEMAEVSMEHLKSNDLVYVWGHLGSYIKTDENGKHKMRYQVDVKEINFVTPDVQALATPEFQKKESRGEDELENYRNRIQLWQIFFASPFEWMDFRKSKVNPKYPDFKNRDTGEVLWLRTDDPPWIKRQLDILDSRFSYESF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19808" PGL_stop="21305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19808" e_stop="20112"/>
            <exon e_start="20226" e_stop="20635"/>
            <exon e_start="21065" e_stop="21305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.219" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.968" e_score="0.983"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19808" e_stop="20112" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.219" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20113" i_stop="20225" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="20226" e_stop="20635" e_length="410"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.968">
            <gDNA_intron_boundary i_start="20636" i_stop="21064" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="21065" e_stop="21305" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19808" stop="20112"/>
              <exon start="20226" stop="20398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19817" stop="20112"/>
              <exon start="20226" stop="20635"/>
              <exon start="21065" stop="21113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19822" stop="20112"/>
              <exon start="20226" stop="20505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19830" stop="20112"/>
              <exon start="20226" stop="20625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19831" stop="20112"/>
              <exon start="20226" stop="20409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20350" stop="20635"/>
              <exon start="21065" stop="21305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGGAAAACAGTTTGAAGTCTCCAAACATGGCGGTGACGGACTTTTTCGCCGGCGAGATTACCACCGAACTCATAAAATACCTGCTGTTGATAGTTAAAAAATCCACTTTATGCCGTTCAAGCGCAGAGAATCTCATTGACAATATCAATGGTCTCCTTCCAATCATCCAAGAAATCAAACAAACCGGTGTTGAACTTCCACAGATACGGCAAACTCAGCTCGACGATTTCTCCAAACTTCTCCGAGATGGCTACGAACTCGCCGGAAAAGTTCTCCACTCCGGCCGTTGGAACATGTACAG : GAACCTACAGTTGGCTAGGAAAATGGAGAGGTTAGAGAAAAGAGTAGCGAGGTTCATGCAAGTGACAATGCAAGCTCATGTACTAGCTGATGTTCATCATGTTAGGTTTAATATGGAGCAGAGATTTGATGTGCTTGAGCATAGGCTTAAAGCTATAAAAATCGGAGTTGATGATAGAAGTGGTGGAGGAGGAGGGTGTTTAGGGGAAGCTGTGAAAAGAATGGAAGAAGATGAGAAATGGTTTGAGGATAGTTTTGTAAATTTAGGTGCTGGGATTGAATTGGGGAAGAGGAAGGTGAAGGAGATGCTGATGGGTGAACAAGATAGGGGTGTGTTTGAGATTTGTGGAATTGGGGGTAGTGGCAAAACTACCTTGGCTAAAGAGATTTGTAAAGATGATCAAGTTAAAA : GTTATTTCAAGGACAAGATTTTCTTTTTCACTGTCTCTCAATCTCCAAATGTGGAGCAATTAAGGAAAATGATTTGGGAAAAGATATCAGGGTGTAATCTCCATGGTTATGGATACGGGGAGATGTTTCCCCAGTGGAACCTACAGTACCAATGGAATACGAAATCTGCATCCCCGGTACTCTTGATTCTTGATGATGTGTGGTCTGCATCTGTTCTAGAGCCACTAGTTTTCAAGATCCC</gDNA_template>
            <first_frame> N  V  E  N  S  L  K  S  P  N  M  A  V  T  D  F  F  A  G  E  I  T  T  E  L  I  K  Y  L  L  L  I  V  K  K  S  T  L  C  R  S  S  A  E  N  L  I  D  N  I  N  G  L  L  P  I  I  Q  E  I  K  Q  T  G  V  E  L  P  Q  I  R  Q  T  Q  L  D  D  F  S  K  L  L  R  D  G  Y  E  L  A  G  K  V  L  H  S  G  R  W  N  M  Y  R :   N  L  Q  L  A  R  K  M  E  R  L  E  K  R  V  A  R  F  M  Q  V  T  M  Q  A  H  V  L  A  D  V  H  H  V  R  F  N  M  E  Q  R  F  D  V  L  E  H  R  L  K  A  I  K  I  G  V  D  D  R  S  G  G  G  G  G  C  L  G  E  A  V  K  R  M  E  E  D  E  K  W  F  E  D  S  F  V  N  L  G  A  G  I  E  L  G  K  R  K  V  K  E  M  L  M  G  E  Q  D  R  G  V  F  E  I  C  G  I  G  G  S  G  K  T  T  L  A  K  E  I  C  K  D  D  Q  V  K   : S  Y  F  K  D  K  I  F  F  F  T  V  S  Q  S  P  N  V  E  Q  L  R  K  M  I  W  E  K  I  S  G  C  N  L  H  G  Y  G  Y  G  E  M  F  P  Q  W  N  L  Q  Y  Q  W  N  T  K  S  A  S  P  V  L  L  I  L  D  D  V  W  S  A  S  V  L  E  P  L  V  F  K  I   </first_frame>
            <second_frame>  M  W  K  T  V  *  S  L  Q  T  W  R  *  R  T  F  S  P  A  R  L  P  P  N  S  *  N  T  C  C  *  *  L  K  N  P  L  Y  A  V  Q  A  Q  R  I  S  L  T  I  S  M  V  S  F  Q  S  S  K  K  S  N  K  P  V  L  N  F  H  R  Y  G  K  L  S  S  T  I  S  P  N  F  S  E  M  A  T  N  S  P  E  K  F  S  T  P  A  V  G  T  C  T   : G  T  Y  S  W  L  G  K  W  R  G  *  R  K  E  *  R  G  S  C  K  *  Q  C  K  L  M  Y  *  L  M  F  I  M  L  G  L  I  W  S  R  D  L  M  C  L  S  I  G  L  K  L  *  K  S  E  L  M  I  E  V  V  E  E  E  G  V  *  G  K  L  *  K  E  W  K  K  M  R  N  G  L  R  I  V  L  *  I  *  V  L  G  L  N  W  G  R  G  R  *  R  R  C  *  W  V  N  K  I  G  V  C  L  R  F  V  E  L  G  V  V  A  K  L  P  W  L  K  R  F  V  K  M  I  K  L  K  :  V  I  S  R  T  R  F  S  F  S  L  S  L  N  L  Q  M  W  S  N  *  G  K  *  F  G  K  R  Y  Q  G  V  I  S  M  V  M  D  T  G  R  C  F  P  S  G  T  Y  S  T  N  G  I  R  N  L  H  P  R  Y  S  *  F  L  M  M  C  G  L  H  L  F  *  S  H  *  F  S  R  S  </second_frame>
            <third_frame>   C  G  K  Q  F  E  V  S  K  H  G  G  D  G  L  F  R  R  R  D  Y  H  R  T  H  K  I  P  A  V  D  S  *  K  I  H  F  M  P  F  K  R  R  E  S  H  *  Q  Y  Q  W  S  P  S  N  H  P  R  N  Q  T  N  R  C  *  T  S  T  D  T  A  N  S  A  R  R  F  L  Q  T  S  P  R  W  L  R  T  R  R  K  S  S  P  L  R  P  L  E  H  V  Q  :  E  P  T  V  G  *  E  N  G  E  V  R  E  K  S  S  E  V  H  A  S  D  N  A  S  S  C  T  S  *  C  S  S  C  *  V  *  Y  G  A  E  I  *  C  A  *  A  *  A  *  S  Y  K  N  R  S  *  *  *  K  W  W  R  R  R  V  F  R  G  S  C  E  K  N  G  R  R  *  E  M  V  *  G  *  F  C  K  F  R  C  W  D  *  I  G  E  E  E  G  E  G  D  A  D  G  *  T  R  *  G  C  V  *  D  L  W  N  W  G  *  W  Q  N  Y  L  G  *  R  D  L  *  R  *  S  S  *  K :   L  F  Q  G  Q  D  F  L  F  H  C  L  S  I  S  K  C  G  A  I  K  E  N  D  L  G  K  D  I  R  V  *  S  P  W  L  W  I  R  G  D  V  S  P  V  E  P  T  V  P  M  E  Y  E  I  C  I  P  G  T  L  D  S  *  *  C  V  V  C  I  C  S  R  A  T  S  F  Q  D  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19808" stop="20112"/>
                    <exon start="20226" stop="20635"/>
                    <exon start="21065" stop="21303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVENSLKSPNMAVTDFFAGEITTELIKYLLLIVKKSTLCRSSAENLIDNINGLLPIIQEIKQTGVELPQIRQTQLDDFSKLLRDGYELAGKVLHSGRWNMYRNLQLARKMERLEKRVARFMQVTMQAHVLADVHHVRFNMEQRFDVLEHRLKAIKIGVDDRSGGGGGCLGEAVKRMEEDEKWFEDSFVNLGAGIELGKRKVKEMLMGEQDRGVFEICGIGGSGKTTLAKEICKDDQVKSYFKDKIFFFTVSQSPNVEQLRKMIWEKISGCNLHGYGYGEMFPQWNLQYQWNTKSASPVLLILDDVWSASVLEPLVFKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21400" PGL_stop="24141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21400" e_stop="21474"/>
            <exon e_start="21573" e_stop="21928"/>
            <exon e_start="22042" e_stop="22247"/>
            <exon e_start="22333" e_stop="23333"/>
            <exon e_start="24116" e_stop="24141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="0.920"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="0.992"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="21400" e_stop="21474" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21475" i_stop="21572" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="21573" e_stop="21928" e_length="356"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22042" e_stop="22247" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22333" e_stop="23333" e_length="1001"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23334" i_stop="24115" i_length="782"/>
          </intron>
          <exon e_serial="5" e_score="0.692">
            <gDNA_exon_boundary e_start="24116" e_stop="24141" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21400" stop="21474"/>
              <exon start="21573" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21849" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21849" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21855" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22190" stop="22247"/>
              <exon start="22333" stop="22851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22592" stop="23333"/>
              <exon start="24116" stop="24141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCCTTATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAG : ATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAATAGATTATCACGATGCCAACCTGTCTGTGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG : AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG : ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCTGCCCACATCTGAAAAGGCTTCCCCCGGGAATTGGTCATTTGGTAAAGCTGAAGTACCTTGACATTTCACAATGTGTTGGTTTGAGATGTCTCCCTGAAGCAATTGGTTGCTGTAGAAACTTAGAGAAGATCGATATGAGGGAGTGCCCTCAAATCGACAGTTTGCCTAGCGCTCTATCCTTTCTTGAATCATTACGCTGTGTTATCTGTGACGATGAAATTTTTTGTCAATGGAAAGACGTTGAGAAGGCTGTACCAGGTCTCTGTGTACAGGTTGCCGAGGAGTGCCATACTCTTGACTGGCTATCTCAGTAATCAAAGTTTTCAATTCCCTCGCGTTGGGCTTCTTTTGTGTAAATATAGCAAGGCTCAGTTAATTTTCCAGTTCTGTATTTTCCCCTTTACATGGGGTTCCTTATATCTCTTGTAAATAATATATATAGCTACATGTAAATATATAGATGGATTACATCTCAATAGCTA : AATAACATGAGAAATATAAATGAAAA</gDNA_template>
            <first_frame> M  S  L  F  C  H  F  A  F  G  H  N  S  F  P  R  G  F  S  Q  K  L  V  K  E  :  I  V  D  E  C  E  G  L  P  L  A  L  K  V  I  G  S  S  L  K  G  K  P  E  M  L  W  T  S  A  K  N  R  L  S  R  C  Q  P  V  C  E  S  H  E  L  Q  L  L  E  R  M  K  L  S  I  D  C  L  P  E  K  V  R  E  C  F  L  D  L  G  A  F  P  E  D  K  R  I  P  L  D  V  L  I  N  M  W  V  E  L  H  D  I  D  E  E  E  A  F  H  I  L  V  E  L  S  D  K  N  L  L  N  L  V  K  D  A  R :   A  G  D  M  Y  T  S  Y  Y  E  I  S  V  F  Q  H  D  V  L  R  D  L  A  I  H  M  S  N  R  D  D  I  N  K  R  K  R  L  V  M  P  R  R  D  T  S  F  P  R  E  W  E  R  N  V  D  E  P  F  H  A  R  V  I  S  V  H  T   : D  E  M  R  E  M  D  W  F  R  M  D  C  P  K  V  E  V  L  I  L  N  F  A  S  S  E  Y  F  L  P  P  F  L  E  N  M  P  K  L  R  A  L  I  I  I  N  Y  S  A  G  N  A  V  L  H  N  M  S  V  F  S  H  L  T  N  L  R  S  L  W  F  E  K  I  S  I  T  H  L  S  D  S  T  N  P  L  N  N  L  R  K  I  S  L  V  L  C  D  M  K  N  S  L  D  E  S  D  V  D  L  P  G  L  F  P  Q  L  S  E  F  T  M  D  H  C  I  N  F  N  K  L  P  S  S  I  C  R  L  H  K  L  N  S  L  S  I  T  N  C  D  S  L  Y  E  L  P  S  D  L  G  E  L  Q  T  L  Q  V  L  R  I  Y  A  C  P  H  L  K  R  L  P  P  G  I  G  H  L  V  K  L  K  Y  L  D  I  S  Q  C  V  G  L  R  C  L  P  E  A  I  G  C  C  R  N  L  E  K  I  D  M  R  E  C  P  Q  I  D  S  L  P  S  A  L  S  F  L  E  S  L  R  C  V  I  C  D  D  E  I  F  C  Q  W  K  D  V  E  K  A  V  P  G  L  C  V  Q  V  A  E  E  C  H  T  L  D  W  L  S  Q  *  S  K  F  S  I  P  S  R  W  A  S  F  V  *  I  *  Q  G  S  V  N  F  P  V  L  Y  F  P  L  Y  M  G  F  L  I  S  L  V  N  N  I  Y  S  Y  M  *  I  Y  R  W  I  T  S  Q  *  L  :  N  N  M  R  N  I  N  E   </first_frame>
            <second_frame>  C  P  Y  F  A  I  L  L  L  D  T  I  P  F  R  V  V  S  A  K  S  L  S  K  R :   L  W  M  N  V  K  G  F  L  W  L  L  R  S  L  D  L  H  *  R  E  N  L  R  C  Y  G  Q  V  Q  K  I  D  Y  H  D  A  N  L  S  V  S  L  M  N  C  S  C  L  S  E  *  N  *  V  L  T  V  C  L  R  R  C  E  S  V  S  W  T  W  V  L  S  Q  K  T  K  G  F  L  S  M  F  *  L  T  C  G  W  S  Y  M  I  L  M  R  R  R  L  F  T  F  L  L  N  F  Q  T  K  I  S  *  I  *  S  K  M  H   : E  L  E  T  C  I  Q  V  T  M  R  Y  R  C  F  S  M  M  Y  Y  E  T  *  Q  F  I  *  A  T  V  M  I  *  I  R  E  S  D  W  L  C  R  E  E  T  Q  A  S  Q  E  N  G  K  E  M  W  T  N  L  S  M  H  E  S  S  L  C  I  Q  :  M  K  *  E  K  W  T  G  S  E  W  I  A  R  K  L  K  Y  *  F  S  T  L  P  H  L  N  T  S  Y  L  L  F  W  R  T  C  Q  S  *  G  H  *  *  S  *  T  I  V  L  A  M  P  F  F  I  T  C  L  Y  S  V  I  *  P  T  *  E  A  F  G  S  R  R  Y  P  S  L  T  Y  L  T  P  Q  I  L  S  I  T  C  E  R  Y  L  *  C  F  V  T  *  K  T  A  *  M  S  Q  M  *  T  S  L  V  C  S  H  S  S  R  S  S  Q  W  I  T  A  S  T  S  T  S  Y  H  Q  A  F  A  G  C  I  S  S  T  A  L  A  S  L  I  V  I  V  F  M  N  F  H  L  I  *  V  N  Y  K  L  Y  K  F  *  G  Y  M  P  A  H  I  *  K  G  F  P  R  E  L  V  I  W  *  S  *  S  T  L  T  F  H  N  V  L  V  *  D  V  S  L  K  Q  L  V  A  V  E  T  *  R  R  S  I  *  G  S  A  L  K  S  T  V  C  L  A  L  Y  P  F  L  N  H  Y  A  V  L  S  V  T  M  K  F  F  V  N  G  K  T  L  R  R  L  Y  Q  V  S  V  Y  R  L  P  R  S  A  I  L  L  T  G  Y  L  S  N  Q  S  F  Q  F  P  R  V  G  L  L  L  C  K  Y  S  K  A  Q  L  I  F  Q  F  C  I  F  P  F  T  W  G  S  L  Y  L  L  *  I  I  Y  I  A  T  C  K  Y  I  D  G  L  H  L  N  S  * :   I  T  *  E  I  *  M  K  </second_frame>
            <third_frame>   V  L  I  L  P  F  C  F  W  T  Q  F  L  S  A  W  F  Q  P  K  A  C  Q  R   : D  C  G  *  M  *  R  A  S  F  G  S  *  G  H  W  I  F  I  E  G  K  T  *  D  V  M  D  K  C  K  K  *  I  I  T  M  P  T  C  L  *  V  S  *  T  A  V  A  *  A  N  E  I  E  Y  *  L  F  A  *  E  G  A  R  V  F  P  G  L  G  C  F  P  R  R  Q  K  D  S  S  R  C  S  N  *  H  V  G  G  A  T  *  Y  *  *  G  G  G  F  S  H  S  C  *  T  F  R  Q  K  S  P  K  S  S  Q  R  C  T  :  S  W  R  H  V  Y  K  L  L  *  D  I  G  V  S  A  *  C  I  T  R  P  S  N  S  Y  E  Q  P  *  *  Y  K  *  E  K  A  I  G  Y  A  A  K  R  H  K  L  P  K  R  M  G  K  K  C  G  R  T  F  P  C  T  S  H  L  C  A  Y  R :   *  N  E  R  N  G  L  V  Q  N  G  L  P  E  S  *  S  T  D  S  Q  L  C  L  I  *  I  L  L  T  S  F  S  G  E  H  A  K  A  K  G  I  D  N  H  K  L  *  C  W  Q  C  R  S  S  *  H  V  C  I  Q  S  F  N  Q  L  E  K  P  L  V  R  E  D  I  H  H  S  L  I  *  L  H  K  S  S  Q  *  P  A  K  D  I  S  S  A  L  *  H  E  K  Q  L  R  *  V  R  C  R  P  P  W  F  V  P  T  A  L  G  V  H  N  G  S  L  H  Q  L  Q  Q  A  T  I  K  H  L  P  V  A  *  A  Q  Q  P  *  H  H  *  L  *  *  S  L  *  T  S  I  *  F  R  *  I  T  N  S  T  S  S  K  D  I  C  L  P  T  S  E  K  A  S  P  G  N  W  S  F  G  K  A  E  V  P  *  H  F  T  M  C  W  F  E  M  S  P  *  S  N  W  L  L  *  K  L  R  E  D  R  Y  E  G  V  P  S  N  R  Q  F  A  *  R  S  I  L  S  *  I  I  T  L  C  Y  L  *  R  *  N  F  L  S  M  E  R  R  *  E  G  C  T  R  S  L  C  T  G  C  R  G  V  P  Y  S  *  L  A  I  S  V  I  K  V  F  N  S  L  A  L  G  F  F  C  V  N  I  A  R  L  S  *  F  S  S  S  V  F  S  P  L  H  G  V  P  Y  I  S  C  K  *  Y  I  *  L  H  V  N  I  *  M  D  Y  I  S  I  A   : K  *  H  E  K  Y  K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21400" stop="21474"/>
                    <exon start="21573" stop="21928"/>
                    <exon start="22042" stop="22247"/>
                    <exon start="22333" stop="23165"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSLFCHFAFGHNSFPRGFSQKLVKEIVDECEGLPLALKVIGSSLKGKPEMLWTSAKNRLSRCQPVCESHELQLLERMKLSIDCLPEKVRECFLDLGAFPEDKRIPLDVLINMWVELHDIDEEEAFHILVELSDKNLLNLVKDARAGDMYTSYYEISVFQHDVLRDLAIHMSNRDDINKRKRLVMPRRDTSFPREWERNVDEPFHARVISVHTDEMREMDWFRMDCPKVEVLILNFASSEYFLPPFLENMPKLRALIIINYSAGNAVLHNMSVFSHLTNLRSLWFEKISITHLSDSTNPLNNLRKISLVLCDMKNSLDESDVDLPGLFPQLSEFTMDHCINFNKLPSSICRLHKLNSLSITNCDSLYELPSDLGELQTLQVLRIYACPHLKRLPPGIGHLVKLKYLDISQCVGLRCLPEAIGCCRNLEKIDMRECPQIDSLPSALSFLESLRCVICDDEIFCQWKDVEKAVPGLCVQVAEECHTLDWLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21400" e_stop="21474"/>
            <exon e_start="21573" e_stop="21928"/>
            <exon e_start="22042" e_stop="22247"/>
            <exon e_start="22333" e_stop="23337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="0.920"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="0.992"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="21400" e_stop="21474" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21475" i_stop="21572" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="21573" e_stop="21928" e_length="356"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="21929" i_stop="22041" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22042" e_stop="22247" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="22248" i_stop="22332" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="22333" e_stop="23337" e_length="1005"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21400" stop="21474"/>
              <exon start="21573" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21849" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21849" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21855" stop="21928"/>
              <exon start="22042" stop="22247"/>
              <exon start="22333" stop="22476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22190" stop="22247"/>
              <exon start="22333" stop="22851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22648" stop="23337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCCTTATTTTGCCATTTTGCTTTTGGACACAATTCCTTTCCGCGTGGTTTCAGCCAAAAGCTTGTCAAAGAG : ATTGTGGATGAATGTGAAGGGCTTCCTTTGGCTCTTAAGGTCATTGGATCTTCATTGAAGGGAAAACCTGAGATGTTATGGACAAGTGCAAAAAATAGATTATCACGATGCCAACCTGTCTGTGAGTCTCATGAACTGCAGTTGCTTGAGCGAATGAAATTGAGTATTGACTGTTTGCCTGAGAAGGTGCGAGAGTGTTTCCTGGACTTGGGTGCTTTCCCAGAAGACAAAAGGATTCCTCTCGATGTTCTAATTAACATGTGGGTGGAGCTACATGATATTGATGAGGAGGAGGCTTTTCACATTCTTGTTGAACTTTCAGACAAAAATCTCCTAAATCTAGTCAAAGATGCACG : AGCTGGAGACATGTATACAAGTTACTATGAGATATCGGTGTTTCAGCATGATGTATTACGAGACCTAGCAATTCATATGAGCAACCGTGATGATATAAATAAGAGAAAGCGATTGGTTATGCCGCGAAGAGACACAAGCTTCCCAAGAGAATGGGAAAGAAATGTGGACGAACCTTTCCATGCACGAGTCATCTCTGTGCATACAG : ATGAAATGAGAGAAATGGACTGGTTCAGAATGGATTGCCCGAAAGTTGAAGTACTGATTCTCAACTTTGCCTCATCTGAATACTTCTTACCTCCTTTTCTGGAGAACATGCCAAAGCTAAGGGCATTGATAATCATAAACTATAGTGCTGGCAATGCCGTTCTTCATAACATGTCTGTATTCAGTCATTTAACCAACTTGAGAAGCCTTTGGTTCGAGAAGATATCCATCACTCACTTATCTGACTCCACAAATCCTCTCAATAACCTGCGAAAGATATCTCTAGTGCTTTGTGACATGAAAAACAGCTTAGATGAGTCAGATGTAGACCTCCCTGGTTTGTTCCCACAGCTCTCGGAGTTCACAATGGATCACTGCATCAACTTCAACAAGCTACCATCAAGCATTTGCCGGTTGCATAAGCTCAACAGCCTTAGCATCACTAATTGTGATAGTCTTTATGAACTTCCATCTGATTTAGGTGAATTACAAACTCTACAAGTTCTAAGGATATATGCCTGCCCACATCTGAAAAGGCTTCCCCCGGGAATTGGTCATTTGGTAAAGCTGAAGTACCTTGACATTTCACAATGTGTTGGTTTGAGATGTCTCCCTGAAGCAATTGGTTGCTGTAGAAACTTAGAGAAGATCGATATGAGGGAGTGCCCTCAAATCGACAGTTTGCCTAGCGCTCTATCCTTTCTTGAATCATTACGCTGTGTTATCTGTGACGATGAAATTTTTTGTCAATGGAAAGACGTTGAGAAGGCTGTACCAGGTCTCTGTGTACAGGTTGCCGAGGAGTGCCATACTCTTGACTGGCTATCTCAGTAATCAAAGTTTTCAATTCCCTCGCGTTGGGCTTCTTTTGTGTAAATATAGCAAGGCTCAGTTAATTTTCCAGTTCTGTATTTTCCCCTTTACATGGGGTTCCTTATATCTCTTGTAAATAATATATATAGCTACATGTAAATATATAGATGGATTACATCTCAATAGCTAATCT</gDNA_template>
            <first_frame> M  S  L  F  C  H  F  A  F  G  H  N  S  F  P  R  G  F  S  Q  K  L  V  K  E  :  I  V  D  E  C  E  G  L  P  L  A  L  K  V  I  G  S  S  L  K  G  K  P  E  M  L  W  T  S  A  K  N  R  L  S  R  C  Q  P  V  C  E  S  H  E  L  Q  L  L  E  R  M  K  L  S  I  D  C  L  P  E  K  V  R  E  C  F  L  D  L  G  A  F  P  E  D  K  R  I  P  L  D  V  L  I  N  M  W  V  E  L  H  D  I  D  E  E  E  A  F  H  I  L  V  E  L  S  D  K  N  L  L  N  L  V  K  D  A  R :   A  G  D  M  Y  T  S  Y  Y  E  I  S  V  F  Q  H  D  V  L  R  D  L  A  I  H  M  S  N  R  D  D  I  N  K  R  K  R  L  V  M  P  R  R  D  T  S  F  P  R  E  W  E  R  N  V  D  E  P  F  H  A  R  V  I  S  V  H  T   : D  E  M  R  E  M  D  W  F  R  M  D  C  P  K  V  E  V  L  I  L  N  F  A  S  S  E  Y  F  L  P  P  F  L  E  N  M  P  K  L  R  A  L  I  I  I  N  Y  S  A  G  N  A  V  L  H  N  M  S  V  F  S  H  L  T  N  L  R  S  L  W  F  E  K  I  S  I  T  H  L  S  D  S  T  N  P  L  N  N  L  R  K  I  S  L  V  L  C  D  M  K  N  S  L  D  E  S  D  V  D  L  P  G  L  F  P  Q  L  S  E  F  T  M  D  H  C  I  N  F  N  K  L  P  S  S  I  C  R  L  H  K  L  N  S  L  S  I  T  N  C  D  S  L  Y  E  L  P  S  D  L  G  E  L  Q  T  L  Q  V  L  R  I  Y  A  C  P  H  L  K  R  L  P  P  G  I  G  H  L  V  K  L  K  Y  L  D  I  S  Q  C  V  G  L  R  C  L  P  E  A  I  G  C  C  R  N  L  E  K  I  D  M  R  E  C  P  Q  I  D  S  L  P  S  A  L  S  F  L  E  S  L  R  C  V  I  C  D  D  E  I  F  C  Q  W  K  D  V  E  K  A  V  P  G  L  C  V  Q  V  A  E  E  C  H  T  L  D  W  L  S  Q  *  S  K  F  S  I  P  S  R  W  A  S  F  V  *  I  *  Q  G  S  V  N  F  P  V  L  Y  F  P  L  Y  M  G  F  L  I  S  L  V  N  N  I  Y  S  Y  M  *  I  Y  R  W  I  T  S  Q  *  L  I  </first_frame>
            <second_frame>  C  P  Y  F  A  I  L  L  L  D  T  I  P  F  R  V  V  S  A  K  S  L  S  K  R :   L  W  M  N  V  K  G  F  L  W  L  L  R  S  L  D  L  H  *  R  E  N  L  R  C  Y  G  Q  V  Q  K  I  D  Y  H  D  A  N  L  S  V  S  L  M  N  C  S  C  L  S  E  *  N  *  V  L  T  V  C  L  R  R  C  E  S  V  S  W  T  W  V  L  S  Q  K  T  K  G  F  L  S  M  F  *  L  T  C  G  W  S  Y  M  I  L  M  R  R  R  L  F  T  F  L  L  N  F  Q  T  K  I  S  *  I  *  S  K  M  H   : E  L  E  T  C  I  Q  V  T  M  R  Y  R  C  F  S  M  M  Y  Y  E  T  *  Q  F  I  *  A  T  V  M  I  *  I  R  E  S  D  W  L  C  R  E  E  T  Q  A  S  Q  E  N  G  K  E  M  W  T  N  L  S  M  H  E  S  S  L  C  I  Q  :  M  K  *  E  K  W  T  G  S  E  W  I  A  R  K  L  K  Y  *  F  S  T  L  P  H  L  N  T  S  Y  L  L  F  W  R  T  C  Q  S  *  G  H  *  *  S  *  T  I  V  L  A  M  P  F  F  I  T  C  L  Y  S  V  I  *  P  T  *  E  A  F  G  S  R  R  Y  P  S  L  T  Y  L  T  P  Q  I  L  S  I  T  C  E  R  Y  L  *  C  F  V  T  *  K  T  A  *  M  S  Q  M  *  T  S  L  V  C  S  H  S  S  R  S  S  Q  W  I  T  A  S  T  S  T  S  Y  H  Q  A  F  A  G  C  I  S  S  T  A  L  A  S  L  I  V  I  V  F  M  N  F  H  L  I  *  V  N  Y  K  L  Y  K  F  *  G  Y  M  P  A  H  I  *  K  G  F  P  R  E  L  V  I  W  *  S  *  S  T  L  T  F  H  N  V  L  V  *  D  V  S  L  K  Q  L  V  A  V  E  T  *  R  R  S  I  *  G  S  A  L  K  S  T  V  C  L  A  L  Y  P  F  L  N  H  Y  A  V  L  S  V  T  M  K  F  F  V  N  G  K  T  L  R  R  L  Y  Q  V  S  V  Y  R  L  P  R  S  A  I  L  L  T  G  Y  L  S  N  Q  S  F  Q  F  P  R  V  G  L  L  L  C  K  Y  S  K  A  Q  L  I  F  Q  F  C  I  F  P  F  T  W  G  S  L  Y  L  L  *  I  I  Y  I  A  T  C  K  Y  I  D  G  L  H  L  N  S  *  S </second_frame>
            <third_frame>   V  L  I  L  P  F  C  F  W  T  Q  F  L  S  A  W  F  Q  P  K  A  C  Q  R   : D  C  G  *  M  *  R  A  S  F  G  S  *  G  H  W  I  F  I  E  G  K  T  *  D  V  M  D  K  C  K  K  *  I  I  T  M  P  T  C  L  *  V  S  *  T  A  V  A  *  A  N  E  I  E  Y  *  L  F  A  *  E  G  A  R  V  F  P  G  L  G  C  F  P  R  R  Q  K  D  S  S  R  C  S  N  *  H  V  G  G  A  T  *  Y  *  *  G  G  G  F  S  H  S  C  *  T  F  R  Q  K  S  P  K  S  S  Q  R  C  T  :  S  W  R  H  V  Y  K  L  L  *  D  I  G  V  S  A  *  C  I  T  R  P  S  N  S  Y  E  Q  P  *  *  Y  K  *  E  K  A  I  G  Y  A  A  K  R  H  K  L  P  K  R  M  G  K  K  C  G  R  T  F  P  C  T  S  H  L  C  A  Y  R :   *  N  E  R  N  G  L  V  Q  N  G  L  P  E  S  *  S  T  D  S  Q  L  C  L  I  *  I  L  L  T  S  F  S  G  E  H  A  K  A  K  G  I  D  N  H  K  L  *  C  W  Q  C  R  S  S  *  H  V  C  I  Q  S  F  N  Q  L  E  K  P  L  V  R  E  D  I  H  H  S  L  I  *  L  H  K  S  S  Q  *  P  A  K  D  I  S  S  A  L  *  H  E  K  Q  L  R  *  V  R  C  R  P  P  W  F  V  P  T  A  L  G  V  H  N  G  S  L  H  Q  L  Q  Q  A  T  I  K  H  L  P  V  A  *  A  Q  Q  P  *  H  H  *  L  *  *  S  L  *  T  S  I  *  F  R  *  I  T  N  S  T  S  S  K  D  I  C  L  P  T  S  E  K  A  S  P  G  N  W  S  F  G  K  A  E  V  P  *  H  F  T  M  C  W  F  E  M  S  P  *  S  N  W  L  L  *  K  L  R  E  D  R  Y  E  G  V  P  S  N  R  Q  F  A  *  R  S  I  L  S  *  I  I  T  L  C  Y  L  *  R  *  N  F  L  S  M  E  R  R  *  E  G  C  T  R  S  L  C  T  G  C  R  G  V  P  Y  S  *  L  A  I  S  V  I  K  V  F  N  S  L  A  L  G  F  F  C  V  N  I  A  R  L  S  *  F  S  S  S  V  F  S  P  L  H  G  V  P  Y  I  S  C  K  *  Y  I  *  L  H  V  N  I  *  M  D  Y  I  S  I  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21400" stop="21474"/>
                    <exon start="21573" stop="21928"/>
                    <exon start="22042" stop="22247"/>
                    <exon start="22333" stop="23165"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSLFCHFAFGHNSFPRGFSQKLVKEIVDECEGLPLALKVIGSSLKGKPEMLWTSAKNRLSRCQPVCESHELQLLERMKLSIDCLPEKVRECFLDLGAFPEDKRIPLDVLINMWVELHDIDEEEAFHILVELSDKNLLNLVKDARAGDMYTSYYEISVFQHDVLRDLAIHMSNRDDINKRKRLVMPRRDTSFPREWERNVDEPFHARVISVHTDEMREMDWFRMDCPKVEVLILNFASSEYFLPPFLENMPKLRALIIINYSAGNAVLHNMSVFSHLTNLRSLWFEKISITHLSDSTNPLNNLRKISLVLCDMKNSLDESDVDLPGLFPQLSEFTMDHCINFNKLPSSICRLHKLNSLSITNCDSLYELPSDLGELQTLQVLRIYACPHLKRLPPGIGHLVKLKYLDISQCVGLRCLPEAIGCCRNLEKIDMRECPQIDSLPSALSFLESLRCVICDDEIFCQWKDVEKAVPGLCVQVAEECHTLDWLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31281" PGL_stop="24195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31281" e_stop="30870"/>
            <exon e_start="28774" e_stop="28677"/>
            <exon e_start="28590" e_stop="28414"/>
            <exon e_start="26915" e_stop="26815"/>
            <exon e_start="26656" e_stop="26581"/>
            <exon e_start="26488" e_stop="26429"/>
            <exon e_start="26346" e_stop="26162"/>
            <exon e_start="26084" e_stop="25988"/>
            <exon e_start="25687" e_stop="25601"/>
            <exon e_start="25476" e_stop="25418"/>
            <exon e_start="25224" e_stop="25133"/>
            <exon e_start="25022" e_stop="24945"/>
            <exon e_start="24861" e_stop="24701"/>
            <exon e_start="24539" e_stop="24195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.909" e_score="0.993"/>
          <exon-intron don_prob="0.982" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.104" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="31281" e_stop="30870" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.909">
            <gDNA_intron_boundary i_start="30869" i_stop="28775" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28774" e_stop="28677" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.981">
            <gDNA_intron_boundary i_start="28676" i_stop="28591" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="28590" e_stop="28414" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28413" i_stop="26916" i_length="1498"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26915" e_stop="26815" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26814" i_stop="26657" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26656" e_stop="26581" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.935">
            <gDNA_intron_boundary i_start="26580" i_stop="26489" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26488" e_stop="26429" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.790">
            <gDNA_intron_boundary i_start="26428" i_stop="26347" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26346" e_stop="26162" e_length="185"/>
          </exon>
          <intron i_serial="7" don_prob="0.104" acc_prob="0.978">
            <gDNA_intron_boundary i_start="26161" i_stop="26085" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26084" e_stop="25988" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="25987" i_stop="25688" i_length="300"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25687" e_stop="25601" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.735" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25600" i_stop="25477" i_length="124"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25418" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.888" acc_prob="0.886">
            <gDNA_intron_boundary i_start="25417" i_stop="25225" i_length="193"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25224" e_stop="25133" e_length="92"/>
          </exon>
          <intron i_serial="11" don_prob="0.750" acc_prob="0.637">
            <gDNA_intron_boundary i_start="25132" i_stop="25023" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25022" e_stop="24945" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.833">
            <gDNA_intron_boundary i_start="24944" i_stop="24862" i_length="83"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="24861" e_stop="24701" e_length="161"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24700" i_stop="24540" i_length="161"/>
          </intron>
          <exon e_serial="14" e_score="0.997">
            <gDNA_exon_boundary e_start="24539" e_stop="24195" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31281" stop="30870"/>
              <exon start="28774" stop="28677"/>
              <exon start="28590" stop="28414"/>
              <exon start="26915" stop="26815"/>
              <exon start="26656" stop="26581"/>
              <exon start="26488" stop="26429"/>
              <exon start="26346" stop="26162"/>
              <exon start="26084" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25133"/>
              <exon start="25022" stop="24945"/>
              <exon start="24861" stop="24701"/>
              <exon start="24539" stop="24195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26884" stop="26815"/>
              <exon start="26656" stop="26581"/>
              <exon start="26488" stop="26429"/>
              <exon start="26346" stop="26162"/>
              <exon start="26084" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26219" stop="26162"/>
              <exon start="26084" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25133"/>
              <exon start="25022" stop="24945"/>
              <exon start="24861" stop="24701"/>
              <exon start="24539" stop="24414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26043" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25133"/>
              <exon start="25022" stop="24945"/>
              <exon start="24861" stop="24701"/>
              <exon start="24539" stop="24525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26043" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25133"/>
              <exon start="25022" stop="24945"/>
              <exon start="24861" stop="24701"/>
              <exon start="24539" stop="24525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26042" stop="25988"/>
              <exon start="25687" stop="25601"/>
              <exon start="25476" stop="25418"/>
              <exon start="25224" stop="25133"/>
              <exon start="25022" stop="24945"/>
              <exon start="24861" stop="24701"/>
              <exon start="24539" stop="24268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATAAAAAGATAAAAAAATGGGGTGTCTATAATTTGCATGTTTCAGTACTTATTAATCTCAAAATCTGATCTTGAGTATTTAAATTCCATTTACTTACTATTGTAATTAATGCTAGTCATTTCAAGAAAAGGGGAAAAAGACTCAATTTTTAAGCTCAGGTTTCATGTCGGTGCTGATTCTTGAAAACTAAGTTTAAAGATTCAACCTTTAGACCTATTTTGTAGATTTTTTTTTTTTGAGAGAAAATTATGGGGGAGACACATAATCATGAACACAACCACCAGCCACCGCCGCAACAGGCGGCGGCGCCACCAGCAATGCCACTTGGTTCAGCAAGAGGACCTATGTTTCCTCCGGCAGAGCAACTACTTCAGCTTCACTACTGCATACACTCAAATCCTTCTTGGC : CACAAACTGTTTTGTTGGCTTTTCAACACTACATAGTTATGCTTGGAACAACAGTAATGATTGCCACCGTGCTGGTACCTCAGATGGGTGGGGGTCCG : GGTGACAAAGCTCAAGTTATCCAGTCTTTGCTTTTCACTTCAGGAGTGAATACTCTTCTGCAAACGCTTTTTGGCACAAGACTTCCCACTGTGATGGGTCCGTCATTTGCTTACATCATATCAGCTCTGTCAGTCATTAACGATCTCTCGGACAGTAATTTCAGGAGTGAGCATGAG : AGATTCAAGCACACTATGAGAGCTATTCAAGGGTCACTGATAGTGTCTTCCTTTATCAACATAATACTTGGATATGGCCAAGCGTGGGGAAATCTTACAAG : GTTTTTCAGTCCTGTAGTCATTACGCCACTTGTCTGTGTTGTAGGTCTTGGTTTGTTTGGTAGGGGTTTTCCTCAG : GTGGGTGATTGTATAGAGATTGGCCTTCCCATGTTAATTCTACTTGTCATTTCTCAGCAG : TATATGCAACGTGTTCATCCAGTTGCCCAATCCATACTTGAAAGGTTTGCTTTGCTCCTCTGCATTGGGTTTATCTGGGCTTTTGCTGCTATTCTTACTGTTGCCGGTGCTTACAACCATGTGAAGGAGCAAACTAAGATGAACTGCCGAATTGACCATTCGTTCCTCTTGTCATCGGCTCCATG : GATCAAAGTTCCTTACCCTTTCCTGTGGGGGACTCCTATATTCAGAGCTAGCAATGTCTTTGGAATGATGGGTGCTGCACTTGTATCAGCAGCAGAG : TCAACAGCAACTTTTTATGCTGCATCAAGGCTTGCAGGTGCGACCACCCCTCCGGCCCATGTTGTGAGTAGAAGCATTGGCTTACAG : GGTATAGGACAGCTCTTTGACGGGTTCTTTGGTGCTATTGTTGGTACTACTGCATCTGT : TGAAAATGTCGGCCTTCTGGGACTAACTCGTGTTGGGAGTAGAAGAGTTGTTCAGATTTCTACTGCTTTCATGATCTTCTTCTCCATATTTG : GAAAATTCGGAGCATTCTTTGCTCAAATTCCTTTGCCCATATTTGCAGCTATCTACTGCATCTTATACGGTATAGTAG : CTGCTATTGGTATTTCCTTCATCCAATTTGCGAACAAAAACTCCATGCGGAATATATACGTGCTCGGTGTCTCTCTATTCCTCGGTATATCTATACCTCAATACTTTGTGATGAACACAGATATAGCTGGTCATGGACCTGTTAGAACTCCAGCTGGATGG : TTCAATGACATATTGAACACAATATTCTCTTCACCTCCTACTGTTGCAACGATTGTCGGGACAGTAGTAGACAACACACTCGAAGCAAGACACTCATATGACGATAGAGGTATTCCGTGGTTGGTTCCTTTCCAGAGGAGGAAAGGAGATAGCAGAAATGAGGAGTTCTATAGTTACCCTCTTAGAATTAATGAGTACATCCCAAGTAGATTTCTGTGATAACTTATACATCCATGTATATGACTGTATCAAAGCTGTATGACAAAATTTCTTTTTAGCTCTCCACTTTAGTCCATTGTTTGTTTGTTTTTCCATTTCAATTCTTGTCACATGAAATTTTTGAAC</gDNA_template>
            <first_frame> *  N  K  K  I  K  K  W  G  V  Y  N  L  H  V  S  V  L  I  N  L  K  I  *  S  *  V  F  K  F  H  L  L  T  I  V  I  N  A  S  H  F  K  K  R  G  K  R  L  N  F  *  A  Q  V  S  C  R  C  *  F  L  K  T  K  F  K  D  S  T  F  R  P  I  L  *  I  F  F  F  *  E  K  I  M  G  E  T  H  N  H  E  H  N  H  Q  P  P  P  Q  Q  A  A  A  P  P  A  M  P  L  G  S  A  R  G  P  M  F  P  P  A  E  Q  L  L  Q  L  H  Y  C  I  H  S  N  P  S  W   : P  Q  T  V  L  L  A  F  Q  H  Y  I  V  M  L  G  T  T  V  M  I  A  T  V  L  V  P  Q  M  G  G  G  P  :  G  D  K  A  Q  V  I  Q  S  L  L  F  T  S  G  V  N  T  L  L  Q  T  L  F  G  T  R  L  P  T  V  M  G  P  S  F  A  Y  I  I  S  A  L  S  V  I  N  D  L  S  D  S  N  F  R  S  E  H  E  :  R  F  K  H  T  M  R  A  I  Q  G  S  L  I  V  S  S  F  I  N  I  I  L  G  Y  G  Q  A  W  G  N  L  T  R :   F  F  S  P  V  V  I  T  P  L  V  C  V  V  G  L  G  L  F  G  R  G  F  P  Q  :  V  G  D  C  I  E  I  G  L  P  M  L  I  L  L  V  I  S  Q  Q  :  Y  M  Q  R  V  H  P  V  A  Q  S  I  L  E  R  F  A  L  L  L  C  I  G  F  I  W  A  F  A  A  I  L  T  V  A  G  A  Y  N  H  V  K  E  Q  T  K  M  N  C  R  I  D  H  S  F  L  L  S  S  A  P  W :   I  K  V  P  Y  P  F  L  W  G  T  P  I  F  R  A  S  N  V  F  G  M  M  G  A  A  L  V  S  A  A  E  :  S  T  A  T  F  Y  A  A  S  R  L  A  G  A  T  T  P  P  A  H  V  V  S  R  S  I  G  L  Q  :  G  I  G  Q  L  F  D  G  F  F  G  A  I  V  G  T  T  A  S  V :   E  N  V  G  L  L  G  L  T  R  V  G  S  R  R  V  V  Q  I  S  T  A  F  M  I  F  F  S  I  F   : G  K  F  G  A  F  F  A  Q  I  P  L  P  I  F  A  A  I  Y  C  I  L  Y  G  I  V   : A  A  I  G  I  S  F  I  Q  F  A  N  K  N  S  M  R  N  I  Y  V  L  G  V  S  L  F  L  G  I  S  I  P  Q  Y  F  V  M  N  T  D  I  A  G  H  G  P  V  R  T  P  A  G  W  :  F  N  D  I  L  N  T  I  F  S  S  P  P  T  V  A  T  I  V  G  T  V  V  D  N  T  L  E  A  R  H  S  Y  D  D  R  G  I  P  W  L  V  P  F  Q  R  R  K  G  D  S  R  N  E  E  F  Y  S  Y  P  L  R  I  N  E  Y  I  P  S  R  F  L  *  *  L  I  H  P  C  I  *  L  Y  Q  S  C  M  T  K  F  L  F  S  S  P  L  *  S  I  V  C  L  F  F  H  F  N  S  C  H  M  K  F  L  N </first_frame>
            <second_frame>  K  I  K  R  *  K  N  G  V  S  I  I  C  M  F  Q  Y  L  L  I  S  K  S  D  L  E  Y  L  N  S  I  Y  L  L  L  *  L  M  L  V  I  S  R  K  G  E  K  D  S  I  F  K  L  R  F  H  V  G  A  D  S  *  K  L  S  L  K  I  Q  P  L  D  L  F  C  R  F  F  F  F  E  R  K  L  W  G  R  H  I  I  M  N  T  T  T  S  H  R  R  N  R  R  R  R  H  Q  Q  C  H  L  V  Q  Q  E  D  L  C  F  L  R  Q  S  N  Y  F  S  F  T  T  A  Y  T  Q  I  L  L  G  :  H  K  L  F  C  W  L  F  N  T  T  *  L  C  L  E  Q  Q  *  *  L  P  P  C  W  Y  L  R  W  V  G  V  R :   V  T  K  L  K  L  S  S  L  C  F  S  L  Q  E  *  I  L  F  C  K  R  F  L  A  Q  D  F  P  L  *  W  V  R  H  L  L  T  S  Y  Q  L  C  Q  S  L  T  I  S  R  T  V  I  S  G  V  S  M  R :   D  S  S  T  L  *  E  L  F  K  G  H  *  *  C  L  P  L  S  T  *  Y  L  D  M  A  K  R  G  E  I  L  Q   : G  F  S  V  L  *  S  L  R  H  L  S  V  L  *  V  L  V  C  L  V  G  V  F  L  R :   W  V  I  V  *  R  L  A  F  P  C  *  F  Y  L  S  F  L  S  S :   I  C  N  V  F  I  Q  L  P  N  P  Y  L  K  G  L  L  C  S  S  A  L  G  L  S  G  L  L  L  L  F  L  L  L  P  V  L  T  T  M  *  R  S  K  L  R  *  T  A  E  L  T  I  R  S  S  C  H  R  L  H   : G  S  K  F  L  T  L  S  C  G  G  L  L  Y  S  E  L  A  M  S  L  E  *  W  V  L  H  L  Y  Q  Q  Q  S :   Q  Q  Q  L  F  M  L  H  Q  G  L  Q  V  R  P  P  L  R  P  M  L  *  V  E  A  L  A  Y  R :   V  *  D  S  S  L  T  G  S  L  V  L  L  L  V  L  L  H  L   : L  K  M  S  A  F  W  D  *  L  V  L  G  V  E  E  L  F  R  F  L  L  L  S  *  S  S  S  P  Y  L  :  E  N  S  E  H  S  L  L  K  F  L  C  P  Y  L  Q  L  S  T  A  S  Y  T  V  *  *  :  L  L  L  V  F  P  S  S  N  L  R  T  K  T  P  C  G  I  Y  T  C  S  V  S  L  Y  S  S  V  Y  L  Y  L  N  T  L  *  *  T  Q  I  *  L  V  M  D  L  L  E  L  Q  L  D  G :   S  M  T  Y  *  T  Q  Y  S  L  H  L  L  L  L  Q  R  L  S  G  Q  *  *  T  T  H  S  K  Q  D  T  H  M  T  I  E  V  F  R  G  W  F  L  S  R  G  G  K  E  I  A  E  M  R  S  S  I  V  T  L  L  E  L  M  S  T  S  Q  V  D  F  C  D  N  L  Y  I  H  V  Y  D  C  I  K  A  V  *  Q  N  F  F  L  A  L  H  F  S  P  L  F  V  C  F  S  I  S  I  L  V  T  *  N  F  *   </second_frame>
            <third_frame>   K  *  K  D  K  K  M  G  C  L  *  F  A  C  F  S  T  Y  *  S  Q  N  L  I  L  S  I  *  I  P  F  T  Y  Y  C  N  *  C  *  S  F  Q  E  K  G  K  K  T  Q  F  L  S  S  G  F  M  S  V  L  I  L  E  N  *  V  *  R  F  N  L  *  T  Y  F  V  D  F  F  F  L  R  E  N  Y  G  G  D  T  *  S  *  T  Q  P  P  A  T  A  A  T  G  G  G  A  T  S  N  A  T  W  F  S  K  R  T  Y  V  S  S  G  R  A  T  T  S  A  S  L  L  H  T  L  K  S  F  L  A :   T  N  C  F  V  G  F  S  T  L  H  S  Y  A  W  N  N  S  N  D  C  H  R  A  G  T  S  D  G  W  G  S   : G  *  Q  S  S  S  Y  P  V  F  A  F  H  F  R  S  E  Y  S  S  A  N  A  F  W  H  K  T  S  H  C  D  G  S  V  I  C  L  H  H  I  S  S  V  S  H  *  R  S  L  G  Q  *  F  Q  E  *  A  *   : E  I  Q  A  H  Y  E  S  Y  S  R  V  T  D  S  V  F  L  Y  Q  H  N  T  W  I  W  P  S  V  G  K  S  Y  K  :  V  F  Q  S  C  S  H  Y  A  T  C  L  C  C  R  S  W  F  V  W  *  G  F  S  S   : G  G  *  L  Y  R  D  W  P  S  H  V  N  S  T  C  H  F  S  A   : V  Y  A  T  C  S  S  S  C  P  I  H  T  *  K  V  C  F  A  P  L  H  W  V  Y  L  G  F  C  C  Y  S  Y  C  C  R  C  L  Q  P  C  E  G  A  N  *  D  E  L  P  N  *  P  F  V  P  L  V  I  G  S  M  :  D  Q  S  S  L  P  F  P  V  G  D  S  Y  I  Q  S  *  Q  C  L  W  N  D  G  C  C  T  C  I  S  S  R   : V  N  S  N  F  L  C  C  I  K  A  C  R  C  D  H  P  S  G  P  C  C  E  *  K  H  W  L  T   : G  Y  R  T  A  L  *  R  V  L  W  C  Y  C  W  Y  Y  C  I  C  :  *  K  C  R  P  S  G  T  N  S  C  W  E  *  K  S  C  S  D  F  Y  C  F  H  D  L  L  L  H  I  W :   K  I  R  S  I  L  C  S  N  S  F  A  H  I  C  S  Y  L  L  H  L  I  R  Y  S  S :   C  Y  W  Y  F  L  H  P  I  C  E  Q  K  L  H  A  E  Y  I  R  A  R  C  L  S  I  P  R  Y  I  Y  T  S  I  L  C  D  E  H  R  Y  S  W  S  W  T  C  *  N  S  S  W  M   : V  Q  *  H  I  E  H  N  I  L  F  T  S  Y  C  C  N  D  C  R  D  S  S  R  Q  H  T  R  S  K  T  L  I  *  R  *  R  Y  S  V  V  G  S  F  P  E  E  E  R  R  *  Q  K  *  G  V  L  *  L  P  S  *  N  *  *  V  H  P  K  *  I  S  V  I  T  Y  T  S  M  Y  M  T  V  S  K  L  Y  D  K  I  S  F  *  L  S  T  L  V  H  C  L  F  V  F  P  F  Q  F  L  S  H  E  I  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31038" stop="30870"/>
                    <exon start="28774" stop="28677"/>
                    <exon start="28590" stop="28414"/>
                    <exon start="26915" stop="26815"/>
                    <exon start="26656" stop="26581"/>
                    <exon start="26488" stop="26429"/>
                    <exon start="26346" stop="26162"/>
                    <exon start="26084" stop="25988"/>
                    <exon start="25687" stop="25601"/>
                    <exon start="25476" stop="25418"/>
                    <exon start="25224" stop="25133"/>
                    <exon start="25022" stop="24945"/>
                    <exon start="24861" stop="24701"/>
                    <exon start="24539" stop="24321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1656</number_coding_nucleotides>
                  <number_encoded_amino_acids>552</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKIMGETHNHEHNHQPPPQQAAAPPAMPLGSARGPMFPPAEQLLQLHYCIHSNPSWPQTVLLAFQHYIVMLGTTVMIATVLVPQMGGGPGDKAQVIQSLLFTSGVNTLLQTLFGTRLPTVMGPSFAYIISALSVINDLSDSNFRSEHERFKHTMRAIQGSLIVSSFINIILGYGQAWGNLTRFFSPVVITPLVCVVGLGLFGRGFPQVGDCIEIGLPMLILLVISQQYMQRVHPVAQSILERFALLLCIGFIWAFAAILTVAGAYNHVKEQTKMNCRIDHSFLLSSAPWIKVPYPFLWGTPIFRASNVFGMMGAALVSAAESTATFYAASRLAGATTPPAHVVSRSIGLQGIGQLFDGFFGAIVGTTASVENVGLLGLTRVGSRRVVQISTAFMIFFSIFGKFGAFFAQIPLPIFAAIYCILYGIVAAIGISFIQFANKNSMRNIYVLGVSLFLGISIPQYFVMNTDIAGHGPVRTPAGWFNDILNTIFSSPPTVATIVGTVVDNTLEARHSYDDRGIPWLVPFQRRKGDSRNEEFYSYPLRINEYIPSRFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30653" e_stop="30192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30653" e_stop="30192" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30653" stop="30192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAATTTTAAAATCAGAAGTATTGCTTGTAATATTAATGTGTTTTTTTGTGCTGAAGAAGAATCTACTTGTAAAGTTAAAGATGAAAAAATTGACACCCGCCTTTTTGTGAAGTTTGTGTTTTCATTTTCATGGTTTGAGTGAATTTTAAAATCTAAAAGTATTCCTACTGAATAACCTTTTTGCTGAACAAGAATCAACTTGTAAAAGGTTCAACCTTTTTATGTTTTTTAAAATATGTTTCAGTTTTCTGATTGTTTTGTGTGATAGTGTCATCTTTGAGAATGTAAAGCTTCCTTCCAGCAGTCCTTCTTGTGTTCCTGTTCTTTGGTATAAATTGATGCCAATTTTCCACATGGTCTAGCTTTGTTCGCTCTTATTGCGAGACAATCACAAAAACAGAAGAGGTTAAATTGTTCCGGTTATAGTAAGATTAACTGTCAGAATGATGAATTGCTGAAG</gDNA_template>
            <first_frame> V  N  F  K  I  R  S  I  A  C  N  I  N  V  F  F  C  A  E  E  E  S  T  C  K  V  K  D  E  K  I  D  T  R  L  F  V  K  F  V  F  S  F  S  W  F  E  *  I  L  K  S  K  S  I  P  T  E  *  P  F  C  *  T  R  I  N  L  *  K  V  Q  P  F  Y  V  F  *  N  M  F  Q  F  S  D  C  F  V  *  *  C  H  L  *  E  C  K  A  S  F  Q  Q  S  F  L  C  S  C  S  L  V  *  I  D  A  N  F  P  H  G  L  A  L  F  A  L  I  A  R  Q  S  Q  K  Q  K  R  L  N  C  S  G  Y  S  K  I  N  C  Q  N  D  E  L  L  K </first_frame>
            <second_frame>  *  I  L  K  S  E  V  L  L  V  I  L  M  C  F  F  V  L  K  K  N  L  L  V  K  L  K  M  K  K  L  T  P  A  F  L  *  S  L  C  F  H  F  H  G  L  S  E  F  *  N  L  K  V  F  L  L  N  N  L  F  A  E  Q  E  S  T  C  K  R  F  N  L  F  M  F  F  K  I  C  F  S  F  L  I  V  L  C  D  S  V  I  F  E  N  V  K  L  P  S  S  S  P  S  C  V  P  V  L  W  Y  K  L  M  P  I  F  H  M  V  *  L  C  S  L  L  L  R  D  N  H  K  N  R  R  G  *  I  V  P  V  I  V  R  L  T  V  R  M  M  N  C  *   </second_frame>
            <third_frame>   E  F  *  N  Q  K  Y  C  L  *  Y  *  C  V  F  L  C  *  R  R  I  Y  L  *  S  *  R  *  K  N  *  H  P  P  F  C  E  V  C  V  F  I  F  M  V  *  V  N  F  K  I  *  K  Y  S  Y  *  I  T  F  L  L  N  K  N  Q  L  V  K  G  S  T  F  L  C  F  L  K  Y  V  S  V  F  *  L  F  C  V  I  V  S  S  L  R  M  *  S  F  L  P  A  V  L  L  V  F  L  F  F  G  I  N  *  C  Q  F  S  T  W  S  S  F  V  R  S  Y  C  E  T  I  T  K  T  E  E  V  K  L  F  R  L  *  *  D  *  L  S  E  *  *  I  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30502" stop="30290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLKVFLLNNLFAEQESTCKRFNLFMFFKICFSFLIVLCDSVIFENVKLPSSSPSCVPVLWYKLMPIFHMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29064" PGL_stop="29687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29064" e_stop="29687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="29064" e_stop="29687" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29064" stop="29687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29145" stop="29378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTATTGCTCAATAGGGAAACCTTTGTTCTATCAAAGTATATTCCTCGGATGGTAAAATACAAGAATTATCCTTTAGCTAAATAACAGTTTATGTTGAGGCAATCTACCAATGGTTAAGAGGATCTTTTGTCGTTATCAGAATTCAGTCATTCCATGGAGAGACTGAAACTCCTTTTGGTTGGAAAATTATATATTGTATGAATGCAAATTTCACATTTATGGAAAGCCTTCCATGATACATTCTGCATCTTAAGAAAGAAGCTTGACACCACTCAACTCCCCATAAACAGTTTGATTTAAGTCTTCTCATGATAGACAGCTCCCTCAAGAGAAAAAGAGAACATGTTACAACTCGATACTAGAAACAAAAGCATTTAACTCGGCAGTCAGAGCAATCTCAACTCCAAACATTGGAGGAGCGGGGAGCTTTCTAAATCACCATGCTTACTATGATTCCAATTTCTTCACCTGACGATAGTCAAAAAGCATAAGCACCAATTGACTCACATGAAAAAGTGACCATTACATGTCTTGGACGATTTAGAAGCTATAATGAATTTTAAGTCGATAATATCTGCAGAGACTCTTCCTTTTCCTCATCATCATTGAATCCCAATACCCT</gDNA_template>
            <first_frame> S  Y  C  S  I  G  K  P  L  F  Y  Q  S  I  F  L  G  W  *  N  T  R  I  I  L  *  L  N  N  S  L  C  *  G  N  L  P  M  V  K  R  I  F  C  R  Y  Q  N  S  V  I  P  W  R  D  *  N  S  F  W  L  E  N  Y  I  L  Y  E  C  K  F  H  I  Y  G  K  P  S  M  I  H  S  A  S  *  E  R  S  L  T  P  L  N  S  P  *  T  V  *  F  K  S  S  H  D  R  Q  L  P  Q  E  K  K  R  T  C  Y  N  S  I  L  E  T  K  A  F  N  S  A  V  R  A  I  S  T  P  N  I  G  G  A  G  S  F  L  N  H  H  A  Y  Y  D  S  N  F  F  T  *  R  *  S  K  S  I  S  T  N  *  L  T  *  K  S  D  H  Y  M  S  W  T  I  *  K  L  *  *  I  L  S  R  *  Y  L  Q  R  L  F  L  F  L  I  I  I  E  S  Q  Y  P </first_frame>
            <second_frame>  L  I  A  Q  *  G  N  L  C  S  I  K  V  Y  S  S  D  G  K  I  Q  E  L  S  F  S  *  I  T  V  Y  V  E  A  I  Y  Q  W  L  R  G  S  F  V  V  I  R  I  Q  S  F  H  G  E  T  E  T  P  F  G  W  K  I  I  Y  C  M  N  A  N  F  T  F  M  E  S  L  P  *  Y  I  L  H  L  K  K  E  A  *  H  H  S  T  P  H  K  Q  F  D  L  S  L  L  M  I  D  S  S  L  K  R  K  R  E  H  V  T  T  R  Y  *  K  Q  K  H  L  T  R  Q  S  E  Q  S  Q  L  Q  T  L  E  E  R  G  A  F  *  I  T  M  L  T  M  I  P  I  S  S  P  D  D  S  Q  K  A  *  A  P  I  D  S  H  E  K  V  T  I  T  C  L  G  R  F  R  S  Y  N  E  F  *  V  D  N  I  C  R  D  S  S  F  S  S  S  S  L  N  P  N  T   </second_frame>
            <third_frame>   L  L  L  N  R  E  T  F  V  L  S  K  Y  I  P  R  M  V  K  Y  K  N  Y  P  L  A  K  *  Q  F  M  L  R  Q  S  T  N  G  *  E  D  L  L  S  L  S  E  F  S  H  S  M  E  R  L  K  L  L  L  V  G  K  L  Y  I  V  *  M  Q  I  S  H  L  W  K  A  F  H  D  T  F  C  I  L  R  K  K  L  D  T  T  Q  L  P  I  N  S  L  I  *  V  F  S  *  *  T  A  P  S  R  E  K  E  N  M  L  Q  L  D  T  R  N  K  S  I  *  L  G  S  Q  S  N  L  N  S  K  H  W  R  S  G  E  L  S  K  S  P  C  L  L  *  F  Q  F  L  H  L  T  I  V  K  K  H  K  H  Q  L  T  H  M  K  K  *  P  L  H  V  L  D  D  L  E  A  I  M  N  F  K  S  I  I  S  A  E  T  L  P  F  P  H  H  H  *  I  P  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="37500" PGL_stop="34746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37488" e_stop="37049"/>
            <exon e_start="35742" e_stop="34746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="37488" e_stop="37049" e_length="440"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37048" i_stop="35743" i_length="1306"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="35742" e_stop="34746" e_length="997"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37488" stop="37049"/>
              <exon start="35742" stop="35481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37381" stop="37049"/>
              <exon start="35742" stop="35684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37127" stop="37049"/>
              <exon start="35742" stop="34946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35661" stop="34904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35367" stop="34746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35367" stop="34751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAG : GCTGTTGAGGTTGCCAGTCAAGTGAATCAATGGGCTGAAAAGGAAACAAGTGGGCTTATCAAAGAAATACTTCCAGCTGACTCAGTTGACAGTTCAACAAGACTTGTGTTTGCAAATGCATTGTACTTTAAAGGAGCCTGGGACGAAAAGTTTGATGCATCAGTGACCAAGGAAAGTGAGTTCCACCTTCTAAATGGGACATCTATTCAAGTGCCCTTCATGACTAGCAAGACGAAGCAATATGTAAAAGCTTTTGATGGTTTCAAGGTGTTAGGCCTTCCGTATAAACAAGGTGAGGATAGACGCCGTTTCTCCATGTACTTCTTTCTGCCTGATGCCAATGATGGACTGCCAGCTTTGGTAGACAAGGTCAGTTCTGAATCCCGATTCTTGGAGCGACACCTTCCATATCAAAAGGTTGGAGTCGGTGAATTCCGTATCCCCAAATTTAAAATATCATTTGGATTTGAAGCTTCTAACGTTCTGAAAGGGCTTGGCCTGGTATTACCTTTCTCTGGTGATGGCCTCACTGAGATGGTAGACTCCCCCGTTGGCAGTAACCTTTATGTTTCTAACATCTTTCACAAGTCCTTTATTGAGGTAAATGAAGAGGGAACAGAAGCTGCAGCTGCAACTGCTGGTGTTGTTAAACTAAGAGGATTGATGATGGAAGAGAAAGTAGACTTTGTTGCTGATCATCCATACCTCTTCCTGATTAGAGAAGATGCAACAGGCGTGGTACTGTTTGTTGGTAGTATACTTAATCCTCTCGCTGAGTAAGTCGTATTCCACTATATTGAGATTGATATATGTTGCTTGTATCTTCTTTGTATCACCCTCGGACTACTTTAGTACCCTGAGTTAGCTCAAACCACCTTCTTGCCCTTCTATCTCAACCGATACTGTGAGTTCAATTTGCCAACTGCTCTTTGTATGTTTGAAATTCAGTGTGACTTGTAATGCCCTACCGTGTACTATGAAATAATTGACATCAAAG</gDNA_template>
            <first_frame> L  I  K  F  F  I  H  K  T  Q  K  S  P  *  K  W  T  F  K  N  Q  S  A  T  K  Q  A  Y  P  *  R  *  P  N  M  F  S  P  L  R  L  K  G  T  P  R  T  W  S  S  P  L  C  R  S  M  *  C  W  V  S  *  Q  R  V  Q  M  A  R  P  V  T  N  C  S  V  S  S  N  R  S  V  L  M  N  *  T  L  F  L  L  R  L  L  R  L  S  L  L  M  V  A  L  V  V  G  L  D  F  R  L  L  I  A  S  G  L  N  R  L  C  L  L  S  I  L  S  N  R  L  W  T  M  F  I  R  L  L  L  L  L  L  I  F  R  K  R :   L  L  R  L  P  V  K  *  I  N  G  L  K  R  K  Q  V  G  L  S  K  K  Y  F  Q  L  T  Q  L  T  V  Q  Q  D  L  C  L  Q  M  H  C  T  L  K  E  P  G  T  K  S  L  M  H  Q  *  P  R  K  V  S  S  T  F  *  M  G  H  L  F  K  C  P  S  *  L  A  R  R  S  N  M  *  K  L  L  M  V  S  R  C  *  A  F  R  I  N  K  V  R  I  D  A  V  S  P  C  T  S  F  C  L  M  P  M  M  D  C  Q  L  W  *  T  R  S  V  L  N  P  D  S  W  S  D  T  F  H  I  K  R  L  E  S  V  N  S  V  S  P  N  L  K  Y  H  L  D  L  K  L  L  T  F  *  K  G  L  A  W  Y  Y  L  S  L  V  M  A  S  L  R  W  *  T  P  P  L  A  V  T  F  M  F  L  T  S  F  T  S  P  L  L  R  *  M  K  R  E  Q  K  L  Q  L  Q  L  L  V  L  L  N  *  E  D  *  *  W  K  R  K  *  T  L  L  L  I  I  H  T  S  S  *  L  E  K  M  Q  Q  A  W  Y  C  L  L  V  V  Y  L  I  L  S  L  S  K  S  Y  S  T  I  L  R  L  I  Y  V  A  C  I  F  F  V  S  P  S  D  Y  F  S  T  L  S  *  L  K  P  P  S  C  P  S  I  S  T  D  T  V  S  S  I  C  Q  L  L  F  V  C  L  K  F  S  V  T  C  N  A  L  P  C  T  M  K  *  L  T  S  K </first_frame>
            <second_frame>  S  *  N  S  S  F  T  K  L  K  N  L  H  R  N  G  P  S  R  I  N  Q  Q  P  N  R  R  I  L  N  A  S  Q  T  C  F  L  H  *  G  *  R  G  H  H  E  H  G  L  L  P  F  V  D  P  C  S  V  G  S  H  S  S  G  F  K  W  P  D  P  *  P  I  A  Q  F  P  Q  I  E  V  Y  *  *  T  K  L  S  F  F  S  D  C  *  G  C  L  C  *  W  *  P  *  W  W  A  S  T  F  G  C  *  *  R  L  G  *  T  D  F  A  S  *  A  F  F  Q  T  D  C  G  Q  C  L  *  G  Y  F  F  F  C  *  F  S  E  K   : G  C  *  G  C  Q  S  S  E  S  M  G  *  K  G  N  K  W  A  Y  Q  R  N  T  S  S  *  L  S  *  Q  F  N  K  T  C  V  C  K  C  I  V  L  *  R  S  L  G  R  K  V  *  C  I  S  D  Q  G  K  *  V  P  P  S  K  W  D  I  Y  S  S  A  L  H  D  *  Q  D  E  A  I  C  K  S  F  *  W  F  Q  G  V  R  P  S  V  *  T  R  *  G  *  T  P  F  L  H  V  L  L  S  A  *  C  Q  *  W  T  A  S  F  G  R  Q  G  Q  F  *  I  P  I  L  G  A  T  P  S  I  S  K  G  W  S  R  *  I  P  Y  P  Q  I  *  N  I  I  W  I  *  S  F  *  R  S  E  R  A  W  P  G  I  T  F  L  W  *  W  P  H  *  D  G  R  L  P  R  W  Q  *  P  L  C  F  *  H  L  S  Q  V  L  Y  *  G  K  *  R  G  N  R  S  C  S  C  N  C  W  C  C  *  T  K  R  I  D  D  G  R  E  S  R  L  C  C  *  S  S  I  P  L  P  D  *  R  R  C  N  R  R  G  T  V  C  W  *  Y  T  *  S  S  R  *  V  S  R  I  P  L  Y  *  D  *  Y  M  L  L  V  S  S  L  Y  H  P  R  T  T  L  V  P  *  V  S  S  N  H  L  L  A  L  L  S  Q  P  I  L  *  V  Q  F  A  N  C  S  L  Y  V  *  N  S  V  *  L  V  M  P  Y  R  V  L  *  N  N  *  H  Q   </second_frame>
            <third_frame>   H  K  I  L  H  S  Q  N  S  K  I  S  I  E  M  D  L  Q  E  S  I  S  N  Q  T  G  V  S  L  T  L  A  K  H  V  F  S  T  E  V  K  G  D  T  T  N  M  V  F  S  P  L  S  I  H  V  V  L  G  L  I  A  A  G  S  N  G  P  T  R  D  Q  L  L  S  F  L  K  S  K  C  T  D  E  L  N  S  L  S  S  Q  I  V  E  V  V  F  A  D  G  S  P  S  G  G  P  R  L  S  V  A  N  S  V  W  V  E  Q  T  L  P  L  K  H  S  F  K  Q  I  V  D  N  V  Y  K  A  T  S  S  S  V  D  F  Q  K  K  :  A  V  E  V  A  S  Q  V  N  Q  W  A  E  K  E  T  S  G  L  I  K  E  I  L  P  A  D  S  V  D  S  S  T  R  L  V  F  A  N  A  L  Y  F  K  G  A  W  D  E  K  F  D  A  S  V  T  K  E  S  E  F  H  L  L  N  G  T  S  I  Q  V  P  F  M  T  S  K  T  K  Q  Y  V  K  A  F  D  G  F  K  V  L  G  L  P  Y  K  Q  G  E  D  R  R  R  F  S  M  Y  F  F  L  P  D  A  N  D  G  L  P  A  L  V  D  K  V  S  S  E  S  R  F  L  E  R  H  L  P  Y  Q  K  V  G  V  G  E  F  R  I  P  K  F  K  I  S  F  G  F  E  A  S  N  V  L  K  G  L  G  L  V  L  P  F  S  G  D  G  L  T  E  M  V  D  S  P  V  G  S  N  L  Y  V  S  N  I  F  H  K  S  F  I  E  V  N  E  E  G  T  E  A  A  A  A  T  A  G  V  V  K  L  R  G  L  M  M  E  E  K  V  D  F  V  A  D  H  P  Y  L  F  L  I  R  E  D  A  T  G  V  V  L  F  V  G  S  I  L  N  P  L  A  E  *  V  V  F  H  Y  I  E  I  D  I  C  C  L  Y  L  L  C  I  T  L  G  L  L  *  Y  P  E  L  A  Q  T  T  F  L  P  F  Y  L  N  R  Y  C  E  F  N  L  P  T  A  L  C  M  F  E  I  Q  C  D  L  *  C  P  T  V  Y  Y  E  I  I  D  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37486" stop="37049"/>
                    <exon start="35742" stop="34963"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKILHSQNSKISIEMDLQESISNQTGVSLTLAKHVFSTEVKGDTTNMVFSPLSIHVVLGLIAAGSNGPTRDQLLSFLKSKCTDELNSLSSQIVEVVFADGSPSGGPRLSVANSVWVEQTLPLKHSFKQIVDNVYKATSSSVDFQKKAVEVASQVNQWAEKETSGLIKEILPADSVDSSTRLVFANALYFKGAWDEKFDASVTKESEFHLLNGTSIQVPFMTSKTKQYVKAFDGFKVLGLPYKQGEDRRRFSMYFFLPDANDGLPALVDKVSSESRFLERHLPYQKVGVGEFRIPKFKISFGFEASNVLKGLGLVLPFSGDGLTEMVDSPVGSNLYVSNIFHKSFIEVNEEGTEAAAATAGVVKLRGLMMEEKVDFVADHPYLFLIREDATGVVLFVGSILNPLAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37500" e_stop="36693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="37500" e_stop="36693" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37500" stop="36891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37500" stop="36891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37499" stop="36693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37499" stop="36830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37499" stop="36869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTTGTTGACTCATAAAATTCTTCATTCACAAAACTCAAAAATCTCCATAGAAATGGACCTTCAAGAATCAATCAGCAACCAAACAGGCGTATCCTTAACGCTAGCCAAACATGTTTTCTCCACTGAGGTTAAAGGGGACACCACGAACATGGTCTTCTCCCCTTTGTCGATCCATGTAGTGTTGGGTCTCATAGCAGCGGGTTCAAATGGCCCGACCCGTGACCAATTGCTCAGTTTCCTCAAATCGAAGTGTACTGATGAACTAAACTCTCTTTCTTCTCAGATTGTTGAGGTTGTCTTTGCTGATGGTAGCCCTAGTGGTGGGCCTCGACTTTCGGTTGCTAATAGCGTCTGGGTTGAACAGACTTTGCCTCTTAAGCATTCTTTCAAACAGATTGTGGACAATGTTTATAAGGCTACTTCTTCTTCTGTTGATTTTCAGAAAAAGGTTCGATTTTTAACGCCCCATTTTTATTTAGAGCTATTTTCTTTCAATTTTTCAAATATAACTGATTGATTCTGTTATGAAATGCTTGATGAGATAACTGTTATATGAAGAGATCTGTTGAATTTGAGTTTTTGAGTTGTTTATGGGGAAATTTTGATGTTATTCAGTTCCAATGACTCTCTCCGTTTTAATTTGTTTGTCTGTTTTAACTTGATATGGAGATATGGAGTTTAAGAAGTAGTTTCAAATGGTGGAAGATAAACCAGTAAACAAGGGAAATAAAATAACAAAAACTCCTAAAATGGTGGAACAAAAAATACAACCTATGCAATAAAACAAGTACTAACAAATGGTGA</gDNA_template>
            <first_frame> L  F  C  *  L  I  K  F  F  I  H  K  T  Q  K  S  P  *  K  W  T  F  K  N  Q  S  A  T  K  Q  A  Y  P  *  R  *  P  N  M  F  S  P  L  R  L  K  G  T  P  R  T  W  S  S  P  L  C  R  S  M  *  C  W  V  S  *  Q  R  V  Q  M  A  R  P  V  T  N  C  S  V  S  S  N  R  S  V  L  M  N  *  T  L  F  L  L  R  L  L  R  L  S  L  L  M  V  A  L  V  V  G  L  D  F  R  L  L  I  A  S  G  L  N  R  L  C  L  L  S  I  L  S  N  R  L  W  T  M  F  I  R  L  L  L  L  L  L  I  F  R  K  R  F  D  F  *  R  P  I  F  I  *  S  Y  F  L  S  I  F  Q  I  *  L  I  D  S  V  M  K  C  L  M  R  *  L  L  Y  E  E  I  C  *  I  *  V  F  E  L  F  M  G  K  F  *  C  Y  S  V  P  M  T  L  S  V  L  I  C  L  S  V  L  T  *  Y  G  D  M  E  F  K  K  *  F  Q  M  V  E  D  K  P  V  N  K  G  N  K  I  T  K  T  P  K  M  V  E  Q  K  I  Q  P  M  Q  *  N  K  Y  *  Q  M  V  </first_frame>
            <second_frame>  F  F  V  D  S  *  N  S  S  F  T  K  L  K  N  L  H  R  N  G  P  S  R  I  N  Q  Q  P  N  R  R  I  L  N  A  S  Q  T  C  F  L  H  *  G  *  R  G  H  H  E  H  G  L  L  P  F  V  D  P  C  S  V  G  S  H  S  S  G  F  K  W  P  D  P  *  P  I  A  Q  F  P  Q  I  E  V  Y  *  *  T  K  L  S  F  F  S  D  C  *  G  C  L  C  *  W  *  P  *  W  W  A  S  T  F  G  C  *  *  R  L  G  *  T  D  F  A  S  *  A  F  F  Q  T  D  C  G  Q  C  L  *  G  Y  F  F  F  C  *  F  S  E  K  G  S  I  F  N  A  P  F  L  F  R  A  I  F  F  Q  F  F  K  Y  N  *  L  I  L  L  *  N  A  *  *  D  N  C  Y  M  K  R  S  V  E  F  E  F  L  S  C  L  W  G  N  F  D  V  I  Q  F  Q  *  L  S  P  F  *  F  V  C  L  F  *  L  D  M  E  I  W  S  L  R  S  S  F  K  W  W  K  I  N  Q  *  T  R  E  I  K  *  Q  K  L  L  K  W  W  N  K  K  Y  N  L  C  N  K  T  S  T  N  K  W  * </second_frame>
            <third_frame>   F  L  L  T  H  K  I  L  H  S  Q  N  S  K  I  S  I  E  M  D  L  Q  E  S  I  S  N  Q  T  G  V  S  L  T  L  A  K  H  V  F  S  T  E  V  K  G  D  T  T  N  M  V  F  S  P  L  S  I  H  V  V  L  G  L  I  A  A  G  S  N  G  P  T  R  D  Q  L  L  S  F  L  K  S  K  C  T  D  E  L  N  S  L  S  S  Q  I  V  E  V  V  F  A  D  G  S  P  S  G  G  P  R  L  S  V  A  N  S  V  W  V  E  Q  T  L  P  L  K  H  S  F  K  Q  I  V  D  N  V  Y  K  A  T  S  S  S  V  D  F  Q  K  K  V  R  F  L  T  P  H  F  Y  L  E  L  F  S  F  N  F  S  N  I  T  D  *  F  C  Y  E  M  L  D  E  I  T  V  I  *  R  D  L  L  N  L  S  F  *  V  V  Y  G  E  I  L  M  L  F  S  S  N  D  S  L  R  F  N  L  F  V  C  F  N  L  I  W  R  Y  G  V  *  E  V  V  S  N  G  G  R  *  T  S  K  Q  G  K  *  N  N  K  N  S  *  N  G  G  T  K  N  T  T  Y  A  I  K  Q  V  L  T  N  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37498" stop="36980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLTHKILHSQNSKISIEMDLQESISNQTGVSLTLAKHVFSTEVKGDTTNMVFSPLSIHVVLGLIAAGSNGPTRDQLLSFLKSKCTDELNSLSSQIVEVVFADGSPSGGPRLSVANSVWVEQTLPLKHSFKQIVDNVYKATSSSVDFQKKVRFLTPHFYLELFSFNFSNITD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="41882" PGL_stop="39989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41882" e_stop="41306"/>
            <exon e_start="40948" e_stop="39989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.998"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41882" e_stop="41306" e_length="577"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="41305" i_stop="40949" i_length="357"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="40948" e_stop="39989" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41882" stop="41407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41757" stop="41306"/>
              <exon start="40948" stop="40664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41702" stop="41306"/>
              <exon start="40948" stop="40845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40687" stop="39989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40687" stop="40242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40464" stop="40047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATCTTCAGAGAAATTAAAAGTCTTTATTTGTTGTTATGTGTTTTACTGAATCAAATTCAAATGCAAAACCCCACCTGTTAAGTAACAGATTAGTATATAAATTCTTGCAAACCTTTCAACTTTGTGATCATTCATTCTACTCACTATCCTCCTTCTTCTTCTTCGTTTTCGCGTGCAAATATGGATCTTCGAGAGTCAATCACCAGCCAGACTGATGTTTCTTTCATGCTTGCTAAGCATGTTTTCTCCAACGCGGTTAAAGGCGATACCAACCTGGTGCTCTCTCCTCTTTCAATTCAAATAGTTCTTGGCCTTATTGCTGCTGGCTCTAATGGACCTACTCAGAATCAGCTACTCTCTTTCCTCAAGTCCAGTTCCATTGATGAACTCAACTCTCTTTATTCACATATTTCCAGTTTCGTCTTTGCTGATGGCAGCCCCAATGGAGGTCCGCGATTGTCCGTTGCTAATGGTATTTGGATCGATCAAACGCTGCCTTTAAGGCCTTCTTTCAAACAGGTTGTGGATAATGTTTACAAGGCTGCTTCAGAATATGTTGATTTTCAAAACAAG : GCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATAATTGACTCTTCTATG</gDNA_template>
            <first_frame> C  D  L  Q  R  N  *  K  S  L  F  V  V  M  C  F  T  E  S  N  S  N  A  K  P  H  L  L  S  N  R  L  V  Y  K  F  L  Q  T  F  Q  L  C  D  H  S  F  Y  S  L  S  S  F  F  F  F  V  F  A  C  K  Y  G  S  S  R  V  N  H  Q  P  D  *  C  F  F  H  A  C  *  A  C  F  L  Q  R  G  *  R  R  Y  Q  P  G  A  L  S  S  F  N  S  N  S  S  W  P  Y  C  C  W  L  *  W  T  Y  S  E  S  A  T  L  F  P  Q  V  Q  F  H  *  *  T  Q  L  S  L  F  T  Y  F  Q  F  R  L  C  *  W  Q  P  Q  W  R  S  A  I  V  R  C  *  W  Y  L  D  R  S  N  A  A  F  K  A  F  F  Q  T  G  C  G  *  C  L  Q  G  C  F  R  I  C  *  F  S  K  Q   : G  C  *  S  C  R  S  S  Q  S  V  D  *  N  E  D  K  W  S  H  R  R  D  S  *  S  *  C  S  G  Q  H  D  E  A  D  L  G  Q  C  T  I  F  Q  R  *  M  E  *  E  V  R  C  F  R  N  K  R  P  *  V  P  S  P  R  C  I  A  Y  S  S  T  L  H  D  *  Q  E  E  A  V  H  S  R  I  *  W  L  *  S  V  E  V  S  L  *  T  G  H  R  Y  T  L  L  L  N  V  F  H  S  P  R  C  T  *  W  I  A  R  F  I  *  *  N  *  Y  R  T  W  I  L  N  S  P  R  S  I  *  K  S  Q  G  G  Q  V  S  Y  S  *  I  Q  N  N  L  R  V  *  S  F  R  H  S  K  G  T  W  A  N  I  T  F  L  W  W  W  S  H  *  D  G  *  F  H  F  T  *  E  S  I  C  F  K  S  F  S  Q  V  F  H  *  D  K  *  G  R  H  R  S  C  S  C  Y  S  W  C  N  N  D  H  V  S  *  N  *  E  R  N  R  L  C  C  *  P  S  I  P  V  P  Y  K  R  R  R  Y  W  C  C  V  V  H  R  E  R  A  E  S  S  F  W  L  I  R  P  Y  S  M  I  I  Y  N  F  V  K  K  D  S  S  Q  F  P  L  L  C  F  C  L  M  R  D  A  M  Y  L  N  N  Q  F  P  D  L  C  I  I  L  M  R  S  S  T  V  F  C  T  L  Y  N  *  L  F  Y  </first_frame>
            <second_frame>  V  I  F  R  E  I  K  S  L  Y  L  L  L  C  V  L  L  N  Q  I  Q  M  Q  N  P  T  C  *  V  T  D  *  Y  I  N  S  C  K  P  F  N  F  V  I  I  H  S  T  H  Y  P  P  S  S  S  S  F  S  R  A  N  M  D  L  R  E  S  I  T  S  Q  T  D  V  S  F  M  L  A  K  H  V  F  S  N  A  V  K  G  D  T  N  L  V  L  S  P  L  S  I  Q  I  V  L  G  L  I  A  A  G  S  N  G  P  T  Q  N  Q  L  L  S  F  L  K  S  S  S  I  D  E  L  N  S  L  Y  S  H  I  S  S  F  V  F  A  D  G  S  P  N  G  G  P  R  L  S  V  A  N  G  I  W  I  D  Q  T  L  P  L  R  P  S  F  K  Q  V  V  D  N  V  Y  K  A  A  S  E  Y  V  D  F  Q  N  K  :  A  A  E  V  V  D  Q  V  N  Q  W  T  K  M  K  T  N  G  L  I  E  E  I  L  D  R  D  A  V  D  N  M  T  R  L  I  L  A  N  A  L  Y  F  K  G  E  W  N  E  K  F  D  A  S  E  T  K  D  H  E  F  H  L  L  D  A  L  P  I  R  V  P  F  M  T  S  K  K  K  Q  Y  I  A  G  F  N  G  F  K  V  L  K  F  P  Y  K  Q  G  T  D  T  R  C  F  S  M  Y  F  I  L  P  D  A  H  D  G  L  P  A  L  F  D  K  I  S  T  E  P  G  F  L  T  H  H  V  P  F  R  K  V  R  V  G  K  F  L  I  P  K  F  K  I  T  F  E  F  E  A  S  D  I  L  K  G  L  G  L  T  L  P  F  C  G  G  G  L  T  E  M  V  D  S  T  L  P  E  N  P  S  V  S  K  V  F  H  K  S  F  I  E  I  N  E  E  G  T  E  A  A  A  V  T  A  G  V  I  M  T  T  S  L  R  I  E  K  E  I  D  F  V  A  D  H  P  F  L  F  L  I  R  D  D  A  T  G  V  V  L  F  I  G  S  V  L  N  P  L  S  G  *  *  D  H  I  A  *  L  Y  T  T  L  *  R  R  T  V  H  S  F  L  S  C  V  S  V  *  *  E  M  L  C  I  *  I  T  S  F  Q  I  C  V  L  F  *  *  D  L  L  L  S  F  A  P  Y  I  I  D  S  S  M </second_frame>
            <third_frame>   *  S  S  E  K  L  K  V  F  I  C  C  Y  V  F  Y  *  I  K  F  K  C  K  T  P  P  V  K  *  Q  I  S  I  *  I  L  A  N  L  S  T  L  *  S  F  I  L  L  T  I  L  L  L  L  L  R  F  R  V  Q  I  W  I  F  E  S  Q  S  P  A  R  L  M  F  L  S  C  L  L  S  M  F  S  P  T  R  L  K  A  I  P  T  W  C  S  L  L  F  Q  F  K  *  F  L  A  L  L  L  L  A  L  M  D  L  L  R  I  S  Y  S  L  S  S  S  P  V  P  L  M  N  S  T  L  F  I  H  I  F  P  V  S  S  L  L  M  A  A  P  M  E  V  R  D  C  P  L  L  M  V  F  G  S  I  K  R  C  L  *  G  L  L  S  N  R  L  W  I  M  F  T  R  L  L  Q  N  M  L  I  F  K  T  R :   L  L  K  L  S  I  K  S  I  S  G  L  K  *  R  Q  M  V  S  S  K  R  F  L  I  V  M  Q  W  T  T  *  R  G  *  S  W  P  M  H  Y  I  S  K  V  N  G  M  R  S  S  M  L  Q  K  Q  K  T  M  S  S  I  S  S  M  H  C  L  F  E  Y  P  S  *  L  A  R  R  S  S  T  *  Q  D  L  M  A  L  K  C  *  S  F  L  I  N  R  A  Q  I  H  V  A  S  Q  C  I  S  F  S  Q  M  H  M  M  D  C  P  L  Y  L  I  K  L  V  Q  N  L  D  S  *  L  T  T  F  H  L  E  K  S  G  W  A  S  F  L  F  L  N  S  K  *  P  S  S  L  K  L  P  T  F  *  R  D  L  G  *  H  Y  L  S  V  V  V  V  S  L  R  W  L  I  P  L  Y  L  R  I  H  L  F  Q  K  F  F  T  S  L  S  L  R  *  M  R  K  A  P  K  L  Q  L  L  Q  L  V  *  *  *  P  R  L  L  E  L  R  K  K  S  T  L  L  L  T  I  H  S  C  S  L  *  E  T  T  L  L  V  L  C  C  S  *  G  A  C  *  I  L  F  L  V  N  K  T  I  *  H  D  Y  I  Q  L  C  K  E  G  Q  F  T  V  S  S  L  V  F  L  F  D  E  R  C  Y  V  S  K  *  P  V  S  R  F  V  Y  Y  F  D  E  I  F  Y  C  L  L  H  L  I  *  L  T  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41785" stop="41306"/>
                    <exon start="40948" stop="40169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YINSCKPFNFVIIHSTHYPPSSSSFSRANMDLRESITSQTDVSFMLAKHVFSNAVKGDTNLVLSPLSIQIVLGLIAAGSNGPTQNQLLSFLKSSSIDELNSLYSHISSFVFADGSPNGGPRLSVANGIWIDQTLPLRPSFKQVVDNVYKAASEYVDFQNKAAEVVDQVNQWTKMKTNGLIEEILDRDAVDNMTRLILANALYFKGEWNEKFDASETKDHEFHLLDALPIRVPFMTSKKKQYIAGFNGFKVLKFPYKQGTDTRCFSMYFILPDAHDGLPALFDKISTEPGFLTHHVPFRKVRVGKFLIPKFKITFEFEASDILKGLGLTLPFCGGGLTEMVDSTLPENPSVSKVFHKSFIEINEEGTEAAAVTAGVIMTTSLRIEKEIDFVADHPFLFLIRDDATGVVLFIGSVLNPLSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40962" e_stop="39989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="40962" e_stop="39989" e_length="974"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40962" stop="40510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40687" stop="39989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40687" stop="40242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40464" stop="40047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATTTGATTAAGGCTGCTGAAGTTGTCGATCAAGTCAATCAGTGGACTAAAATGAAGACAAATGGTCTCATCGAAGAGATTCTTGATCGTGATGCAGTGGACAACATGACGAGGCTGATCTTGGCCAATGCACTATATTTCAAAGGTGAATGGAATGAGAAGTTCGATGCTTCAGAAACAAAAGACCATGAGTTCCATCTCCTCGATGCATTGCCTATTCGAGTACCCTTCATGACTAGCAAGAAGAAGCAGTACATAGCAGGATTTAATGGCTTTAAAGTGTTGAAGTTTCCTTATAAACAGGGCACAGATACACGTTGCTTCTCAATGTATTTCATTCTCCCAGATGCACATGATGGATTGCCCGCTTTATTTGATAAAATTAGTACAGAACCTGGATTCTTAACTCACCACGTTCCATTTAGAAAAGTCAGGGTGGGCAAGTTTCTTATTCCTAAATTCAAAATAACCTTCGAGTTTGAAGCTTCCGACATTCTAAAGGGACTTGGGCTAACATTACCTTTCTGTGGTGGTGGTCTCACTGAGATGGTTGATTCCACTTTACCTGAGAATCCATCTGTTTCAAAAGTTTTTCACAAGTCTTTCATTGAGATAAATGAGGAAGGCACCGAAGCTGCAGCTGTTACAGCTGGTGTAATAATGACCACGTCTCTTAGAATTGAGAAAGAAATCGACTTTGTTGCTGACCATCCATTCCTGTTCCTTATAAGAGACGACGCTACTGGTGTTGTGTTGTTCATAGGGAGCGTGCTGAATCCTCTTTCTGGTTAATAAGACCATATAGCATGATTATATACAACTTTGTAAAGAAGGACAGTTCACAGTTTCCTCTCTTGTGTTTCTGTTTGATGAGAGATGCTATGTATCTAAATAACCAGTTTCCAGATTTGTGTATTATTTTGATGAGATCTTCTACTGTCTTTTGCACCTTATATAATTGACTCTTCTATG</gDNA_template>
            <first_frame> P  I  *  L  R  L  L  K  L  S  I  K  S  I  S  G  L  K  *  R  Q  M  V  S  S  K  R  F  L  I  V  M  Q  W  T  T  *  R  G  *  S  W  P  M  H  Y  I  S  K  V  N  G  M  R  S  S  M  L  Q  K  Q  K  T  M  S  S  I  S  S  M  H  C  L  F  E  Y  P  S  *  L  A  R  R  S  S  T  *  Q  D  L  M  A  L  K  C  *  S  F  L  I  N  R  A  Q  I  H  V  A  S  Q  C  I  S  F  S  Q  M  H  M  M  D  C  P  L  Y  L  I  K  L  V  Q  N  L  D  S  *  L  T  T  F  H  L  E  K  S  G  W  A  S  F  L  F  L  N  S  K  *  P  S  S  L  K  L  P  T  F  *  R  D  L  G  *  H  Y  L  S  V  V  V  V  S  L  R  W  L  I  P  L  Y  L  R  I  H  L  F  Q  K  F  F  T  S  L  S  L  R  *  M  R  K  A  P  K  L  Q  L  L  Q  L  V  *  *  *  P  R  L  L  E  L  R  K  K  S  T  L  L  L  T  I  H  S  C  S  L  *  E  T  T  L  L  V  L  C  C  S  *  G  A  C  *  I  L  F  L  V  N  K  T  I  *  H  D  Y  I  Q  L  C  K  E  G  Q  F  T  V  S  S  L  V  F  L  F  D  E  R  C  Y  V  S  K  *  P  V  S  R  F  V  Y  Y  F  D  E  I  F  Y  C  L  L  H  L  I  *  L  T  L  L   </first_frame>
            <second_frame>  Q  F  D  *  G  C  *  S  C  R  S  S  Q  S  V  D  *  N  E  D  K  W  S  H  R  R  D  S  *  S  *  C  S  G  Q  H  D  E  A  D  L  G  Q  C  T  I  F  Q  R  *  M  E  *  E  V  R  C  F  R  N  K  R  P  *  V  P  S  P  R  C  I  A  Y  S  S  T  L  H  D  *  Q  E  E  A  V  H  S  R  I  *  W  L  *  S  V  E  V  S  L  *  T  G  H  R  Y  T  L  L  L  N  V  F  H  S  P  R  C  T  *  W  I  A  R  F  I  *  *  N  *  Y  R  T  W  I  L  N  S  P  R  S  I  *  K  S  Q  G  G  Q  V  S  Y  S  *  I  Q  N  N  L  R  V  *  S  F  R  H  S  K  G  T  W  A  N  I  T  F  L  W  W  W  S  H  *  D  G  *  F  H  F  T  *  E  S  I  C  F  K  S  F  S  Q  V  F  H  *  D  K  *  G  R  H  R  S  C  S  C  Y  S  W  C  N  N  D  H  V  S  *  N  *  E  R  N  R  L  C  C  *  P  S  I  P  V  P  Y  K  R  R  R  Y  W  C  C  V  V  H  R  E  R  A  E  S  S  F  W  L  I  R  P  Y  S  M  I  I  Y  N  F  V  K  K  D  S  S  Q  F  P  L  L  C  F  C  L  M  R  D  A  M  Y  L  N  N  Q  F  P  D  L  C  I  I  L  M  R  S  S  T  V  F  C  T  L  Y  N  *  L  F  Y  </second_frame>
            <third_frame>   N  L  I  K  A  A  E  V  V  D  Q  V  N  Q  W  T  K  M  K  T  N  G  L  I  E  E  I  L  D  R  D  A  V  D  N  M  T  R  L  I  L  A  N  A  L  Y  F  K  G  E  W  N  E  K  F  D  A  S  E  T  K  D  H  E  F  H  L  L  D  A  L  P  I  R  V  P  F  M  T  S  K  K  K  Q  Y  I  A  G  F  N  G  F  K  V  L  K  F  P  Y  K  Q  G  T  D  T  R  C  F  S  M  Y  F  I  L  P  D  A  H  D  G  L  P  A  L  F  D  K  I  S  T  E  P  G  F  L  T  H  H  V  P  F  R  K  V  R  V  G  K  F  L  I  P  K  F  K  I  T  F  E  F  E  A  S  D  I  L  K  G  L  G  L  T  L  P  F  C  G  G  G  L  T  E  M  V  D  S  T  L  P  E  N  P  S  V  S  K  V  F  H  K  S  F  I  E  I  N  E  E  G  T  E  A  A  A  V  T  A  G  V  I  M  T  T  S  L  R  I  E  K  E  I  D  F  V  A  D  H  P  F  L  F  L  I  R  D  D  A  T  G  V  V  L  F  I  G  S  V  L  N  P  L  S  G  *  *  D  H  I  A  *  L  Y  T  T  L  *  R  R  T  V  H  S  F  L  S  C  V  S  V  *  *  E  M  L  C  I  *  I  T  S  F  Q  I  C  V  L  F  *  *  D  L  L  L  S  F  A  P  Y  I  I  D  S  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40960" stop="40169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLIKAAEVVDQVNQWTKMKTNGLIEEILDRDAVDNMTRLILANALYFKGEWNEKFDASETKDHEFHLLDALPIRVPFMTSKKKQYIAGFNGFKVLKFPYKQGTDTRCFSMYFILPDAHDGLPALFDKISTEPGFLTHHVPFRKVRVGKFLIPKFKITFEFEASDILKGLGLTLPFCGGGLTEMVDSTLPENPSVSKVFHKSFIEINEEGTEAAAVTAGVIMTTSLRIEKEIDFVADHPFLFLIRDDATGVVLFIGSVLNPLSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="43882" PGL_stop="42830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43882" e_stop="43400"/>
            <exon e_start="43298" e_stop="42830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.998"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="43882" e_stop="43400" e_length="483"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="43399" i_stop="43299" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="43298" e_stop="42830" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43882" stop="43400"/>
              <exon start="43298" stop="42830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43880" stop="43400"/>
              <exon start="43298" stop="43110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCATATACCCGTCATGGGACTAACTCACTCTCGCTCTCATCATTCTCATTCTTATTCGTCTAGTTCTTTCCATGATCAACGTATTGATATGGAAATGAGTGAATCAATCACCACCCAAACGGGTGTTTCTTTCATTCTCGCAAAGCATGTCTTTTCCAAAGAGATTAAAGGCGATACCAACCTCGTGTTCTCTCCTCTCTCGATTCAAATAGTACTAGGCCTGATTGCTGCAGGCTCAAAGGGGCCAACTAAGGATCAACTACTCTGTTTCCTCAAGTCCAAATCCATCGATGAACTCAATTCTCTGTATTCTCATCTTGTCAATATCGTCTTTGTTGATGGAAGCCCCAATGGAGGTCCACGTTTGTCCGTTGCTAATAGTGTTTGGATCGATCAAACACTGCCTTTTAAGCCTTCTTTTAAAAAGGTTGTGGATAACATTTACAAGGCTGCTTCAAATTCTGTTGATTTTCAGAACAAG : GCTACTGAAGTTGCCAACCATGTCAATCATTGGGCCAAAATGAAGACAAATGATCTCATCAAAGAGATTCTTCCTCATGGTACAGTAAACAATATGACAAGGCTCATCTTTGCAAACGCGCTATATTTTAAAGGAGTGTGGAACGACAAGTTCAATGCTTCAGAAACAAAAGACTATGAATTCCATCTCCTCAGAGGAGGGTCTATTAAAGCACCTTTCATGACCAGTAATAAGAAGCAGTATGCAGTAGCCTTTGATGGCTTTAAAGTATTGGTACTTCATTACAAACAAGGTAGAGACACTACGCGTCATTTCTGTATGTATCTATTTTTGCCAGATGCTCGTGATGGACTACCAGCTTTAGTAGACAAAATCAATTCAGAACCAGGATTTTTAAACCACCATGTTCCGTTTGAAAAGACTAAAATGCGCAAGTTACTTATCCCTAAATTCAAAACAACTTTTGGTT</gDNA_template>
            <first_frame> C  H  I  P  V  M  G  L  T  H  S  R  S  H  H  S  H  S  Y  S  S  S  S  F  H  D  Q  R  I  D  M  E  M  S  E  S  I  T  T  Q  T  G  V  S  F  I  L  A  K  H  V  F  S  K  E  I  K  G  D  T  N  L  V  F  S  P  L  S  I  Q  I  V  L  G  L  I  A  A  G  S  K  G  P  T  K  D  Q  L  L  C  F  L  K  S  K  S  I  D  E  L  N  S  L  Y  S  H  L  V  N  I  V  F  V  D  G  S  P  N  G  G  P  R  L  S  V  A  N  S  V  W  I  D  Q  T  L  P  F  K  P  S  F  K  K  V  V  D  N  I  Y  K  A  A  S  N  S  V  D  F  Q  N  K  :  A  T  E  V  A  N  H  V  N  H  W  A  K  M  K  T  N  D  L  I  K  E  I  L  P  H  G  T  V  N  N  M  T  R  L  I  F  A  N  A  L  Y  F  K  G  V  W  N  D  K  F  N  A  S  E  T  K  D  Y  E  F  H  L  L  R  G  G  S  I  K  A  P  F  M  T  S  N  K  K  Q  Y  A  V  A  F  D  G  F  K  V  L  V  L  H  Y  K  Q  G  R  D  T  T  R  H  F  C  M  Y  L  F  L  P  D  A  R  D  G  L  P  A  L  V  D  K  I  N  S  E  P  G  F  L  N  H  H  V  P  F  E  K  T  K  M  R  K  L  L  I  P  K  F  K  T  T  F  G  </first_frame>
            <second_frame>  A  I  Y  P  S  W  D  *  L  T  L  A  L  I  I  L  I  L  I  R  L  V  L  S  M  I  N  V  L  I  W  K  *  V  N  Q  S  P  P  K  R  V  F  L  S  F  S  Q  S  M  S  F  P  K  R  L  K  A  I  P  T  S  C  S  L  L  S  R  F  K  *  Y  *  A  *  L  L  Q  A  Q  R  G  Q  L  R  I  N  Y  S  V  S  S  S  P  N  P  S  M  N  S  I  L  C  I  L  I  L  S  I  S  S  L  L  M  E  A  P  M  E  V  H  V  C  P  L  L  I  V  F  G  S  I  K  H  C  L  L  S  L  L  L  K  R  L  W  I  T  F  T  R  L  L  Q  I  L  L  I  F  R  T  R :   L  L  K  L  P  T  M  S  I  I  G  P  K  *  R  Q  M  I  S  S  K  R  F  F  L  M  V  Q  *  T  I  *  Q  G  S  S  L  Q  T  R  Y  I  L  K  E  C  G  T  T  S  S  M  L  Q  K  Q  K  T  M  N  S  I  S  S  E  E  G  L  L  K  H  L  S  *  P  V  I  R  S  S  M  Q  *  P  L  M  A  L  K  Y  W  Y  F  I  T  N  K  V  E  T  L  R  V  I  S  V  C  I  Y  F  C  Q  M  L  V  M  D  Y  Q  L  *  *  T  K  S  I  Q  N  Q  D  F  *  T  T  M  F  R  L  K  R  L  K  C  A  S  Y  L  S  L  N  S  K  Q  L  L  V </second_frame>
            <third_frame>   P  Y  T  R  H  G  T  N  S  L  S  L  S  S  F  S  F  L  F  V  *  F  F  P  *  S  T  Y  *  Y  G  N  E  *  I  N  H  H  P  N  G  C  F  F  H  S  R  K  A  C  L  F  Q  R  D  *  R  R  Y  Q  P  R  V  L  S  S  L  D  S  N  S  T  R  P  D  C  C  R  L  K  G  A  N  *  G  S  T  T  L  F  P  Q  V  Q  I  H  R  *  T  Q  F  S  V  F  S  S  C  Q  Y  R  L  C  *  W  K  P  Q  W  R  S  T  F  V  R  C  *  *  C  L  D  R  S  N  T  A  F  *  A  F  F  *  K  G  C  G  *  H  L  Q  G  C  F  K  F  C  *  F  S  E  Q   : G  Y  *  S  C  Q  P  C  Q  S  L  G  Q  N  E  D  K  *  S  H  Q  R  D  S  S  S  W  Y  S  K  Q  Y  D  K  A  H  L  C  K  R  A  I  F  *  R  S  V  E  R  Q  V  Q  C  F  R  N  K  R  L  *  I  P  S  P  Q  R  R  V  Y  *  S  T  F  H  D  Q  *  *  E  A  V  C  S  S  L  *  W  L  *  S  I  G  T  S  L  Q  T  R  *  R  H  Y  A  S  F  L  Y  V  S  I  F  A  R  C  S  *  W  T  T  S  F  S  R  Q  N  Q  F  R  T  R  I  F  K  P  P  C  S  V  *  K  D  *  N  A  Q  V  T  Y  P  *  I  Q  N  N  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43882" stop="43400"/>
                    <exon start="43298" stop="42831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHIPVMGLTHSRSHHSHSYSSSSFHDQRIDMEMSESITTQTGVSFILAKHVFSKEIKGDTNLVFSPLSIQIVLGLIAAGSKGPTKDQLLCFLKSKSIDELNSLYSHLVNIVFVDGSPNGGPRLSVANSVWIDQTLPFKPSFKKVVDNIYKAASNSVDFQNKATEVANHVNHWAKMKTNDLIKEILPHGTVNNMTRLIFANALYFKGVWNDKFNASETKDYEFHLLRGGSIKAPFMTSNKKQYAVAFDGFKVLVLHYKQGRDTTRHFCMYLFLPDARDGLPALVDKINSEPGFLNHHVPFEKTKMRKLLIPKFKTTFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="48217" PGL_stop="47564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48217" e_stop="47822"/>
            <exon e_start="47569" e_stop="47564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.936" e_score="0.943"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="48217" e_stop="47822" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="47821" i_stop="47570" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="47569" e_stop="47564" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48217" stop="47991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48207" stop="47822"/>
              <exon start="47569" stop="47564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACATGTTCCTTACTGAAAATGACTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTTGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTTTGTTTCTGTTTCTGTTCATTAACTTCATAAATATAAGTTATTGTAAGAATAACAA : GCATAA</gDNA_template>
            <first_frame> K  H  V  P  Y  *  K  *  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  F  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  :  A  * </first_frame>
            <second_frame>  N  M  F  L  T  E  N  D  Y  K  R  K  S  I  F  D  F  L  I  T  K  N  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  L  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  I  S  Y  C  K  N  N  K :   H   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  T  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  *  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  S  L  T  S  *  I  *  V  I  V  R  I  T   : S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48217" e_stop="47818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="48217" e_stop="47818" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48217" stop="47991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48153" stop="47818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACATGTTCCTTACTGAAAATGACTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTAAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTTGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTTTGTTTCTGTTTCTGTTCATTAACTTCATAAATATAAGTTATTGTAAGAATAACAAATCA</gDNA_template>
            <first_frame> K  H  V  P  Y  *  K  *  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  F  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  I  </first_frame>
            <second_frame>  N  M  F  L  T  E  N  D  Y  K  R  K  S  I  F  D  F  L  I  T  K  N  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  L  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  I  S  Y  C  K  N  N  K  S </second_frame>
            <third_frame>   T  C  S  L  L  K  M  T  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  *  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  S  L  T  S  *  I  *  V  I  V  R  I  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="53015" PGL_stop="54947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53015" e_stop="53051"/>
            <exon e_start="53165" e_stop="53243"/>
            <exon e_start="53953" e_stop="54170"/>
            <exon e_start="54273" e_stop="54844"/>
            <exon e_start="54931" e_stop="54947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.002" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53015" e_stop="53051" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53052" i_stop="53164" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53165" e_stop="53243" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53244" i_stop="53952" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53953" e_stop="54170" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.002" acc_prob="0.848">
            <gDNA_intron_boundary i_start="54171" i_stop="54272" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="54273" e_stop="54844" e_length="572"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="54845" i_stop="54930" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54931" e_stop="54947" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53015" stop="53051"/>
              <exon start="53165" stop="53243"/>
              <exon start="53953" stop="54170"/>
              <exon start="54273" stop="54540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53032" stop="53051"/>
              <exon start="53165" stop="53243"/>
              <exon start="53953" stop="54170"/>
              <exon start="54273" stop="54518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53032" stop="53051"/>
              <exon start="53165" stop="53243"/>
              <exon start="53953" stop="54170"/>
              <exon start="54273" stop="54480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54358" stop="54844"/>
              <exon start="54931" stop="54947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGCTTAGCAAAAGAGAAGCTTACAATCTAAATG : GGGATTTGCAGAAATGTCAAGACTGAAGAAAAGCAACTTCAAAAGAAGGGGGGAACTAGAGCAGCTCTTTTTGTCTATG : TTGTGGCGGGAATCGATACCATGGCTTTTATTTCAAAGGGTGTGAGCCTGGTGACTTACTTCTCTGGGTATATGAACTTCAGCTTAACGAAATCTGCCAACACTGTGACAAACTTCATGGGAACAGCGTTTTTGCTCTCATTATTTGGAGCGTTTCTCTCAGATACTTACTTCTCCAGATTCAAGACTTGTGTCCTATTTAGCATCATTCAAGTTTTG : GGATTTGCACTGCTAGGAGTTCAAGCGCATTTCAGTCAACTGAGACCATTTCCCTGCAAGGATGTACCTTTAAGCCAAAACGATCAATGTGAATCTGCAGATGCAGGCCAATTGGCAATCTTGTATGGAGGTGTTTATCTGGTAGCACTTGGAAACAGTGGAGTCAAAGCGGCTTTGCCATCATTAGGTGCTGATCAATTTGATGAAAAGGGTCCCAAAGGGGCTGCTAAGCTATCAAGTTACTTCAATTGGCTACTGTTCTTCATCACCATCGGAGCCATGCTTGGAGTTACATTGTTTGTTTGGATAGGTGACAATCAGGGATGGGATTGGTCATTTGGTATCTGTTCTGTAGCAATTGGTTTGTCAACCCTACTCTTGACCATGGGAAAACAGTTTTACAGAAACAATGTTCCTAAAGGTAGCCCTCTGATGCGTATTTCGCAGGTTCTTGTTGCAGCTTTTAGAAACAGAAATCTCCCACTACCACAAAACAATGAAGATTTACATCAGATCAGAAGTGAAGAGGCTGAAAATGGAATAGAGATTATTCAAAGGACTGATCAATTCAA : ATGCTTGGACAGGGCAG</gDNA_template>
            <first_frame> V  W  L  S  K  R  E  A  Y  N  L  N   : G  D  L  Q  K  C  Q  D  *  R  K  A  T  S  K  E  G  G  N  *  S  S  S  F  C  L  C :   C  G  G  N  R  Y  H  G  F  Y  F  K  G  C  E  P  G  D  L  L  L  W  V  Y  E  L  Q  L  N  E  I  C  Q  H  C  D  K  L  H  G  N  S  V  F  A  L  I  I  W  S  V  S  L  R  Y  L  L  L  Q  I  Q  D  L  C  P  I  *  H  H  S  S  F   : G  I  C  T  A  R  S  S  S  A  F  Q  S  T  E  T  I  S  L  Q  G  C  T  F  K  P  K  R  S  M  *  I  C  R  C  R  P  I  G  N  L  V  W  R  C  L  S  G  S  T  W  K  Q  W  S  Q  S  G  F  A  I  I  R  C  *  S  I  *  *  K  G  S  Q  R  G  C  *  A  I  K  L  L  Q  L  A  T  V  L  H  H  H  R  S  H  A  W  S  Y  I  V  C  L  D  R  *  Q  S  G  M  G  L  V  I  W  Y  L  F  C  S  N  W  F  V  N  P  T  L  D  H  G  K  T  V  L  Q  K  Q  C  S  *  R  *  P  S  D  A  Y  F  A  G  S  C  C  S  F  *  K  Q  K  S  P  T  T  T  K  Q  *  R  F  T  S  D  Q  K  *  R  G  *  K  W  N  R  D  Y  S  K  D  *  S  I  Q  :  M  L  G  Q  G   </first_frame>
            <second_frame>  F  G  L  A  K  E  K  L  T  I  *  M  :  G  I  C  R  N  V  K  T  E  E  K  Q  L  Q  K  K  G  G  T  R  A  A  L  F  V  Y   : V  V  A  G  I  D  T  M  A  F  I  S  K  G  V  S  L  V  T  Y  F  S  G  Y  M  N  F  S  L  T  K  S  A  N  T  V  T  N  F  M  G  T  A  F  L  L  S  L  F  G  A  F  L  S  D  T  Y  F  S  R  F  K  T  C  V  L  F  S  I  I  Q  V  L  :  G  F  A  L  L  G  V  Q  A  H  F  S  Q  L  R  P  F  P  C  K  D  V  P  L  S  Q  N  D  Q  C  E  S  A  D  A  G  Q  L  A  I  L  Y  G  G  V  Y  L  V  A  L  G  N  S  G  V  K  A  A  L  P  S  L  G  A  D  Q  F  D  E  K  G  P  K  G  A  A  K  L  S  S  Y  F  N  W  L  L  F  F  I  T  I  G  A  M  L  G  V  T  L  F  V  W  I  G  D  N  Q  G  W  D  W  S  F  G  I  C  S  V  A  I  G  L  S  T  L  L  L  T  M  G  K  Q  F  Y  R  N  N  V  P  K  G  S  P  L  M  R  I  S  Q  V  L  V  A  A  F  R  N  R  N  L  P  L  P  Q  N  N  E  D  L  H  Q  I  R  S  E  E  A  E  N  G  I  E  I  I  Q  R  T  D  Q  F  K :   C  L  D  R  A  </second_frame>
            <third_frame>   L  A  *  Q  K  R  S  L  Q  S  K  W :   G  F  A  E  M  S  R  L  K  K  S  N  F  K  R  R  G  E  L  E  Q  L  F  L  S  M  :  L  W  R  E  S  I  P  W  L  L  F  Q  R  V  *  A  W  *  L  T  S  L  G  I  *  T  S  A  *  R  N  L  P  T  L  *  Q  T  S  W  E  Q  R  F  C  S  H  Y  L  E  R  F  S  Q  I  L  T  S  P  D  S  R  L  V  S  Y  L  A  S  F  K  F  W :   D  L  H  C  *  E  F  K  R  I  S  V  N  *  D  H  F  P  A  R  M  Y  L  *  A  K  T  I  N  V  N  L  Q  M  Q  A  N  W  Q  S  C  M  E  V  F  I  W  *  H  L  E  T  V  E  S  K  R  L  C  H  H  *  V  L  I  N  L  M  K  R  V  P  K  G  L  L  S  Y  Q  V  T  S  I  G  Y  C  S  S  S  P  S  E  P  C  L  E  L  H  C  L  F  G  *  V  T  I  R  D  G  I  G  H  L  V  S  V  L  *  Q  L  V  C  Q  P  Y  S  *  P  W  E  N  S  F  T  E  T  M  F  L  K  V  A  L  *  C  V  F  R  R  F  L  L  Q  L  L  E  T  E  I  S  H  Y  H  K  T  M  K  I  Y  I  R  S  E  V  K  R  L  K  M  E  *  R  L  F  K  G  L  I  N  S   : N  A  W  T  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53049" stop="53051"/>
                    <exon start="53165" stop="53243"/>
                    <exon start="53953" stop="54170"/>
                    <exon start="54273" stop="54844"/>
                    <exon start="54931" stop="54946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGICRNVKTEEKQLQKKGGTRAALFVYVVAGIDTMAFISKGVSLVTYFSGYMNFSLTKSANTVTNFMGTAFLLSLFGAFLSDTYFSRFKTCVLFSIIQVLGFALLGVQAHFSQLRPFPCKDVPLSQNDQCESADAGQLAILYGGVYLVALGNSGVKAALPSLGADQFDEKGPKGAAKLSSYFNWLLFFITIGAMLGVTLFVWIGDNQGWDWSFGICSVAIGLSTLLLTMGKQFYRNNVPKGSPLMRISQVLVAAFRNRNLPLPQNNEDLHQIRSEEAENGIEIIQRTDQFKCLDRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="55002" PGL_stop="55542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55002" e_stop="55542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="55002" e_stop="55542" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55002" stop="55542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTTTGTACTATCTCACAAGTTGAAGAAACAAAGATTGTAGTAAGAATGCTCCCAATTATACTGAGCACTGTCTTCATGAACACTTGCATGGCTCAACTCCAGACTTTCACTATCCAACAAAGCATGACAATGAACAGAAAAATCCGAAACTTTGAAATCCCAGGGCCTTCCATACCTGTAATTCCTCAAGTATTCCAACTCATCATGATCCCAGTCTATGATCGTATCTTTGTTCCGATAGCAAGAAAGTTCACAGGGATCCCTTCTGGTATTCGACAACTGCAACGTATAGGTGTTGGACTAGTATTTTCAGTAGTATCTATGGCAGTGGCTGCAGTTGTAGAAAGTCACAGAAAATCAGTTGCCATTGAGCATAACATGGTTGACTCATCCAGTCAGATACCTATGAGTGTGTTCTGGCTTGGATTTCAATTTGTAATATTTTCCATAGCTGAAGTACTTACATTGATAGGGCTGTTGGATTTCTTCTACGCAGAGAGCACATCAGGCATGAAATCACTGAGTATGGCGATTACATG</gDNA_template>
            <first_frame> A  F  V  L  S  H  K  L  K  K  Q  R  L  *  *  E  C  S  Q  L  Y  *  A  L  S  S  *  T  L  A  W  L  N  S  R  L  S  L  S  N  K  A  *  Q  *  T  E  K  S  E  T  L  K  S  Q  G  L  P  Y  L  *  F  L  K  Y  S  N  S  S  *  S  Q  S  M  I  V  S  L  F  R  *  Q  E  S  S  Q  G  S  L  L  V  F  D  N  C  N  V  *  V  L  D  *  Y  F  Q  *  Y  L  W  Q  W  L  Q  L  *  K  V  T  E  N  Q  L  P  L  S  I  T  W  L  T  H  P  V  R  Y  L  *  V  C  S  G  L  D  F  N  L  *  Y  F  P  *  L  K  Y  L  H  *  *  G  C  W  I  S  S  T  Q  R  A  H  Q  A  *  N  H  *  V  W  R  L  H  </first_frame>
            <second_frame>  P  L  Y  Y  L  T  S  *  R  N  K  D  C  S  K  N  A  P  N  Y  T  E  H  C  L  H  E  H  L  H  G  S  T  P  D  F  H  Y  P  T  K  H  D  N  E  Q  K  N  P  K  L  *  N  P  R  A  F  H  T  C  N  S  S  S  I  P  T  H  H  D  P  S  L  *  S  Y  L  C  S  D  S  K  K  V  H  R  D  P  F  W  Y  S  T  T  A  T  Y  R  C  W  T  S  I  F  S  S  I  Y  G  S  G  C  S  C  R  K  S  Q  K  I  S  C  H  *  A  *  H  G  *  L  I  Q  S  D  T  Y  E  C  V  L  A  W  I  S  I  C  N  I  F  H  S  *  S  T  Y  I  D  R  A  V  G  F  L  L  R  R  E  H  I  R  H  E  I  T  E  Y  G  D  Y  M </second_frame>
            <third_frame>   L  C  T  I  S  Q  V  E  E  T  K  I  V  V  R  M  L  P  I  I  L  S  T  V  F  M  N  T  C  M  A  Q  L  Q  T  F  T  I  Q  Q  S  M  T  M  N  R  K  I  R  N  F  E  I  P  G  P  S  I  P  V  I  P  Q  V  F  Q  L  I  M  I  P  V  Y  D  R  I  F  V  P  I  A  R  K  F  T  G  I  P  S  G  I  R  Q  L  Q  R  I  G  V  G  L  V  F  S  V  V  S  M  A  V  A  A  V  V  E  S  H  R  K  S  V  A  I  E  H  N  M  V  D  S  S  S  Q  I  P  M  S  V  F  W  L  G  F  Q  F  V  I  F  S  I  A  E  V  L  T  L  I  G  L  L  D  F  F  Y  A  E  S  T  S  G  M  K  S  L  S  M  A  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55004" stop="55540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCTISQVEETKIVVRMLPIILSTVFMNTCMAQLQTFTIQQSMTMNRKIRNFEIPGPSIPVIPQVFQLIMIPVYDRIFVPIARKFTGIPSGIRQLQRIGVGLVFSVVSMAVAAVVESHRKSVAIEHNMVDSSSQIPMSVFWLGFQFVIFSIAEVLTLIGLLDFFYAESTSGMKSLSMAIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="63078" PGL_stop="60620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63078" e_stop="62858"/>
            <exon e_start="62519" e_stop="62199"/>
            <exon e_start="60877" e_stop="60620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.982" acc_prob="0.914" e_score="0.997"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="63078" e_stop="62858" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62857" i_stop="62520" i_length="338"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="62519" e_stop="62199" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.914">
            <gDNA_intron_boundary i_start="62198" i_stop="60878" i_length="1321"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="60877" e_stop="60620" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63078" stop="62858"/>
              <exon start="62519" stop="62199"/>
              <exon start="60877" stop="60620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63069" stop="62858"/>
              <exon start="62519" stop="62199"/>
              <exon start="60877" stop="60739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63069" stop="62858"/>
              <exon start="62519" stop="62199"/>
              <exon start="60877" stop="60783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63061" stop="62858"/>
              <exon start="62519" stop="62199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62495" stop="62199"/>
              <exon start="60877" stop="60687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAACTCAGAGATTGACAATGATCCATATCCTTTCTTCTTCTTCTACTACTACTACTACTTTTCTCATACTCTTTTTGGTCCTTTTCACTCTATCTCCATTTCCAGTTTCGATTGCCACTTCATCTACCATACCTTTCAACATCTCCCACTTCCTTTATCCAAGAATCAACTACGAGGAATATCCCCAATCTTCACCTAATCCTCCTTCATTTCTAGAG : GACGTGTTAAAGGGGATTGCTGAGCGAGAGAAATGGGATTTGCAGGACTTGAGAGTTTCCAAGTTGGATGTGAAGAAATCAAAGTTTGGGACTTTGAGGAGGTATGAGTTTCGGGTCAGAATTGGGAAGACGGAATTCGTATTCATGATGGCAGATGAAGTATCTCAGTGGAAAGGCCTTCACTTTCCTAACAAGAATGAATCCGACTTCGAGTCTTTGGTCAAAGAGATTGGTTCCAAAGCCACTCTTGATGTTCTAAAAATCCAAGGGCCATTCGAATTATATGCTACTGGAGATGATTACCTGTCCTTGACCTTACCC : CTGAACTCTTCTTATACTGGGTTGAAAAAGATCCTTGTTGATGAGGGCATCACTGTAGAAGTTAAAGGTGCTGATGAAATATCAATGTTCAACATCTCTGATTTGCTTAAATTAGTAAATGGAAGCATGTTGACCAAGTCAGGAAGCGGTCAATATAGATATATGTTGCAATCGTCCTGCATACCACTACTTCCCGTACATGTAAAGGGACCTGCTTCAGTTCTTGCCTATATCACCAGAAACCCTGACTTAAGAATT</gDNA_template>
            <first_frame> R  K  L  R  D  *  Q  *  S  I  S  F  L  L  L  L  L  L  L  L  L  F  S  Y  S  F  W  S  F  S  L  Y  L  H  F  Q  F  R  L  P  L  H  L  P  Y  L  S  T  S  P  T  S  F  I  Q  E  S  T  T  R  N  I  P  N  L  H  L  I  L  L  H  F  *  R :   T  C  *  R  G  L  L  S  E  R  N  G  I  C  R  T  *  E  F  P  S  W  M  *  R  N  Q  S  L  G  L  *  G  G  M  S  F  G  S  E  L  G  R  R  N  S  Y  S  *  W  Q  M  K  Y  L  S  G  K  A  F  T  F  L  T  R  M  N  P  T  S  S  L  W  S  K  R  L  V  P  K  P  L  L  M  F  *  K  S  K  G  H  S  N  Y  M  L  L  E  M  I  T  C  P  *  P  Y  P :   *  T  L  L  I  L  G  *  K  R  S  L  L  M  R  A  S  L  *  K  L  K  V  L  M  K  Y  Q  C  S  T  S  L  I  C  L  N  *  *  M  E  A  C  *  P  S  Q  E  A  V  N  I  D  I  C  C  N  R  P  A  Y  H  Y  F  P  Y  M  *  R  D  L  L  Q  F  L  P  I  S  P  E  T  L  T  *  E   </first_frame>
            <second_frame>  G  N  S  E  I  D  N  D  P  Y  P  F  F  F  F  Y  Y  Y  Y  Y  F  S  H  T  L  F  G  P  F  H  S  I  S  I  S  S  F  D  C  H  F  I  Y  H  T  F  Q  H  L  P  L  P  L  S  K  N  Q  L  R  G  I  S  P  I  F  T  *  S  S  F  I  S  R   : G  R  V  K  G  D  C  *  A  R  E  M  G  F  A  G  L  E  S  F  Q  V  G  C  E  E  I  K  V  W  D  F  E  E  V  *  V  S  G  Q  N  W  E  D  G  I  R  I  H  D  G  R  *  S  I  S  V  E  R  P  S  L  S  *  Q  E  *  I  R  L  R  V  F  G  Q  R  D  W  F  Q  S  H  S  *  C  S  K  N  P  R  A  I  R  I  I  C  Y  W  R  *  L  P  V  L  D  L  T   : P  E  L  F  L  Y  W  V  E  K  D  P  C  *  *  G  H  H  C  R  S  *  R  C  *  *  N  I  N  V  Q  H  L  *  F  A  *  I  S  K  W  K  H  V  D  Q  V  R  K  R  S  I  *  I  Y  V  A  I  V  L  H  T  T  T  S  R  T  C  K  G  T  C  F  S  S  C  L  Y  H  Q  K  P  *  L  K  N  </second_frame>
            <third_frame>   E  T  Q  R  L  T  M  I  H  I  L  S  S  S  S  T  T  T  T  T  F  L  I  L  F  L  V  L  F  T  L  S  P  F  P  V  S  I  A  T  S  S  T  I  P  F  N  I  S  H  F  L  Y  P  R  I  N  Y  E  E  Y  P  Q  S  S  P  N  P  P  S  F  L  E  :  D  V  L  K  G  I  A  E  R  E  K  W  D  L  Q  D  L  R  V  S  K  L  D  V  K  K  S  K  F  G  T  L  R  R  Y  E  F  R  V  R  I  G  K  T  E  F  V  F  M  M  A  D  E  V  S  Q  W  K  G  L  H  F  P  N  K  N  E  S  D  F  E  S  L  V  K  E  I  G  S  K  A  T  L  D  V  L  K  I  Q  G  P  F  E  L  Y  A  T  G  D  D  Y  L  S  L  T  L  P  :  L  N  S  S  Y  T  G  L  K  K  I  L  V  D  E  G  I  T  V  E  V  K  G  A  D  E  I  S  M  F  N  I  S  D  L  L  K  L  V  N  G  S  M  L  T  K  S  G  S  G  Q  Y  R  Y  M  L  Q  S  S  C  I  P  L  L  P  V  H  V  K  G  P  A  S  V  L  A  Y  I  T  R  N  P  D  L  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63076" stop="62858"/>
                    <exon start="62519" stop="62199"/>
                    <exon start="60877" stop="60620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETQRLTMIHILSSSSTTTTTFLILFLVLFTLSPFPVSIATSSTIPFNISHFLYPRINYEEYPQSSPNPPSFLEDVLKGIAEREKWDLQDLRVSKLDVKKSKFGTLRRYEFRVRIGKTEFVFMMADEVSQWKGLHFPNKNESDFESLVKEIGSKATLDVLKIQGPFELYATGDDYLSLTLPLNSSYTGLKKILVDEGITVEVKGADEISMFNISDLLKLVNGSMLTKSGSGQYRYMLQSSCIPLLPVHVKGPASVLAYITRNPDLRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="67149" PGL_stop="63874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67149" e_stop="66132"/>
            <exon e_start="65386" e_stop="65318"/>
            <exon e_start="65229" e_stop="65158"/>
            <exon e_start="65074" e_stop="64988"/>
            <exon e_start="64900" e_stop="64833"/>
            <exon e_start="64467" e_stop="63874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="67149" e_stop="66132" e_length="1018"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66131" i_stop="65387" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65386" e_stop="65318" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.849">
            <gDNA_intron_boundary i_start="65317" i_stop="65230" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65229" e_stop="65158" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.933">
            <gDNA_intron_boundary i_start="65157" i_stop="65075" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65074" e_stop="64988" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64987" i_stop="64901" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64900" e_stop="64833" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="64832" i_stop="64468" i_length="365"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="64467" e_stop="63874" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67149" stop="66492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67149" stop="66525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67149" stop="66630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67126" stop="66464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67126" stop="66581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67113" stop="66659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67071" stop="66628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67066" stop="66419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67063" stop="66508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67045" stop="66395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67025" stop="66736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66997" stop="66466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66993" stop="66829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66957" stop="66167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66788" stop="66351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66755" stop="66132"/>
              <exon start="65386" stop="65318"/>
              <exon start="65229" stop="65222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66487" stop="66132"/>
              <exon start="65386" stop="65318"/>
              <exon start="65229" stop="65162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66215" stop="66132"/>
              <exon start="65386" stop="65318"/>
              <exon start="65229" stop="65158"/>
              <exon start="65074" stop="64988"/>
              <exon start="64900" stop="64833"/>
              <exon start="64467" stop="64381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65377" stop="65318"/>
              <exon start="65229" stop="65158"/>
              <exon start="65074" stop="64988"/>
              <exon start="64900" stop="64833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65355" stop="65318"/>
              <exon start="65229" stop="65158"/>
              <exon start="65074" stop="64988"/>
              <exon start="64900" stop="64833"/>
              <exon start="64467" stop="63874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65337" stop="65318"/>
              <exon start="65229" stop="65158"/>
              <exon start="65074" stop="64988"/>
              <exon start="64900" stop="64833"/>
              <exon start="64467" stop="64292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65061" stop="64988"/>
              <exon start="64900" stop="64833"/>
              <exon start="64467" stop="64124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATACCCTCCGCTTTTTCTACGGCGAGTTCTCGCCGGCCGTCGTCAAGAGCAAAATCATCGTTTCCCTTTTCCGTTCACTTAATACCCTTTTGAAAAACCCTAATTTTGATCCGATTCTTTCAGCTCACCGTTCAATTCTTTACCTCATTCCGTTGACCTAACTTTTCAATTCACCGATTTCTTTTCCAATTCTCTGATTTCATCAATCCCGATGGCCTTTCTTCGCTTCTTGTAAGGTTTTTACAACTCTCCCCGTTAGTTTCCGAACCCACAATTCTCTACATCTTGCTCGGTTTATTACAATTTGTAGTTATGGCGATCCGGTTCACAGTCACCTATTCCGGCTACTTAGCCCAAAACCTAGCTTCATCGGCTTCTTCGAAAGTCGTTGGTTGCAGGTTTTTTCACGAATGTACTGTCCGATCTCGAATTTTCCATCCACCAGCTCAAAAACCCGAATCAAATTGCTCCGATTTCCGCCGGACAAAACCGAAACCACGGCCGGTGAGTAATACTTACTCTTCCCGGTCGTTTTCGTCCAGTTCAGCGTGTTCTTCGTTTGCTTCTGAGCTTTTTGGCGGAAGTTCGAATTCACCTTTGGTTGTTGGATTGATTTCGCTGATGAGGTCCTCTTCTGGGTCTTGTACCATGAATGCGTTGGGGATTTCGCCATTGAAAGCGTCTTCGTTTCTTCCATTTCTTCAGGGCTCGAAATGGCTTCCTTGTAATGAGCCCAGTATTGGGTCCTCGGGGAGTTCCGAGGTGGATAAAGGTGGAACTGAAACTAGGTGTAGTGAAAGTTCTGTTCGGTCGGAGCCTTTGTCCAATGAAATGAAGGTTTCCAAGAGCCGTTGGGTGTCAAAGTTGTTGAACATCTGTTCTGATGATGCAAAGGCTGCTTTTACAGCTTTGAGTGTTAGCATAATGTTTAAGTCATCTTTGGCTGAGCCAAGATCAATTCCATCTGCTTCCATGTCCCCTACTCTGGATAAGGGTGACCGTATAATGGCTGAAAAG : GTTTCATATTTTTTTCGGCAACCTGACATTTCAGACATAGTGATATTTAAAGCACCACCAATCCTTCAG : CATATTTTTGGTTGTAGTGCTGGAGACGTCTTCATTAAAAGAGTTGTTGCATTAGCTGGGGATTATATTGAA : GTGCGTGAGGGTAAACTGTTTTTGAATGGTGTTGCTCAAGATGAAGATTTCATTTTAGAGCCTATTGCGTATGAAATGGAACCAGTG : CTTGTTCCTGAAGGCTGTGTGTTCGTGATGGGGGACAATCGCAATAATAGCTATGATTCTCACAACTG : GGGTCCACTTCCCGTTGCAAACATTGTCGGTAGGTCAGTATTCAGATATTGGCCCCCATCCAGGGTGTCGGACACCCTGCATGGATCAGTAATGGAGAAGAGAGTAGTTGCAGTTTCTTGACCCTGTCTAAGATGGAGGTGTTCTACTGACTTCTTTCATCTCTTTATTCTTTTACTGATCATTCTCTGCCTTCTGGCTCATTGGATCAGCTGTATAATCTTTCCCATCCCAGCTGCCGTTGTTCGATCCACAATTTGAACAACTTTGAGGATGGATTATCTTAATCCGCCTGTGTGATTGTTTTTCTCAAGTGGCCCTATATTGGGTTTTTGCAATTTTATGTAGTGCAAAGTCTCAGAGATAAAGCTGATCATTGGAATTAGCAAACTCAGTTGTCATGAAGAACTGGAACATTTTCCCTTTCTCCTTAACCGTGGAGTGGAGACCAGACTAGGGAGACACGATGGTGTATCCAACAAAGTTTCAGCTGTAAATCGCGACCAATATTCTGAGGCTGAACATGTTTAATATTTGCTTGTATTCCTGCTGAATGTAGTGAATTATGAAGTATGGTCTCTATATAACAATTTTCT</gDNA_template>
            <first_frame> N  T  L  R  F  F  Y  G  E  F  S  P  A  V  V  K  S  K  I  I  V  S  L  F  R  S  L  N  T  L  L  K  N  P  N  F  D  P  I  L  S  A  H  R  S  I  L  Y  L  I  P  L  T  *  L  F  N  S  P  I  S  F  P  I  L  *  F  H  Q  S  R  W  P  F  F  A  S  C  K  V  F  T  T  L  P  V  S  F  R  T  H  N  S  L  H  L  A  R  F  I  T  I  C  S  Y  G  D  P  V  H  S  H  L  F  R  L  L  S  P  K  P  S  F  I  G  F  F  E  S  R  W  L  Q  V  F  S  R  M  Y  C  P  I  S  N  F  P  S  T  S  S  K  T  R  I  K  L  L  R  F  P  P  D  K  T  E  T  T  A  G  E  *  Y  L  L  F  P  V  V  F  V  Q  F  S  V  F  F  V  C  F  *  A  F  W  R  K  F  E  F  T  F  G  C  W  I  D  F  A  D  E  V  L  F  W  V  L  Y  H  E  C  V  G  D  F  A  I  E  S  V  F  V  S  S  I  S  S  G  L  E  M  A  S  L  *  *  A  Q  Y  W  V  L  G  E  F  R  G  G  *  R  W  N  *  N  *  V  *  *  K  F  C  S  V  G  A  F  V  Q  *  N  E  G  F  Q  E  P  L  G  V  K  V  V  E  H  L  F  *  *  C  K  G  C  F  Y  S  F  E  C  *  H  N  V  *  V  I  F  G  *  A  K  I  N  S  I  C  F  H  V  P  Y  S  G  *  G  *  P  Y  N  G  *  K   : G  F  I  F  F  S  A  T  *  H  F  R  H  S  D  I  *  S  T  T  N  P  S   : A  Y  F  W  L  *  C  W  R  R  L  H  *  K  S  C  C  I  S  W  G  L  Y  *   : S  A  *  G  *  T  V  F  E  W  C  C  S  R  *  R  F  H  F  R  A  Y  C  V  *  N  G  T  S   : A  C  S  *  R  L  C  V  R  D  G  G  Q  S  Q  *  *  L  *  F  S  Q  L  :  G  S  T  S  R  C  K  H  C  R  *  V  S  I  Q  I  L  A  P  I  Q  G  V  G  H  P  A  W  I  S  N  G  E  E  S  S  C  S  F  L  T  L  S  K  M  E  V  F  Y  *  L  L  S  S  L  Y  S  F  T  D  H  S  L  P  S  G  S  L  D  Q  L  Y  N  L  S  H  P  S  C  R  C  S  I  H  N  L  N  N  F  E  D  G  L  S  *  S  A  C  V  I  V  F  L  K  W  P  Y  I  G  F  L  Q  F  Y  V  V  Q  S  L  R  D  K  A  D  H  W  N  *  Q  T  Q  L  S  *  R  T  G  T  F  S  L  S  P  *  P  W  S  G  D  Q  T  R  E  T  R  W  C  I  Q  Q  S  F  S  C  K  S  R  P  I  F  *  G  *  T  C  L  I  F  A  C  I  P  A  E  C  S  E  L  *  S  M  V  S  I  *  Q  F  S </first_frame>
            <second_frame>  I  P  S  A  F  S  T  A  S  S  R  R  P  S  S  R  A  K  S  S  F  P  F  S  V  H  L  I  P  F  *  K  T  L  I  L  I  R  F  F  Q  L  T  V  Q  F  F  T  S  F  R  *  P  N  F  S  I  H  R  F  L  F  Q  F  S  D  F  I  N  P  D  G  L  S  S  L  L  V  R  F  L  Q  L  S  P  L  V  S  E  P  T  I  L  Y  I  L  L  G  L  L  Q  F  V  V  M  A  I  R  F  T  V  T  Y  S  G  Y  L  A  Q  N  L  A  S  S  A  S  S  K  V  V  G  C  R  F  F  H  E  C  T  V  R  S  R  I  F  H  P  P  A  Q  K  P  E  S  N  C  S  D  F  R  R  T  K  P  K  P  R  P  V  S  N  T  Y  S  S  R  S  F  S  S  S  S  A  C  S  S  F  A  S  E  L  F  G  G  S  S  N  S  P  L  V  V  G  L  I  S  L  M  R  S  S  S  G  S  C  T  M  N  A  L  G  I  S  P  L  K  A  S  S  F  L  P  F  L  Q  G  S  K  W  L  P  C  N  E  P  S  I  G  S  S  G  S  S  E  V  D  K  G  G  T  E  T  R  C  S  E  S  S  V  R  S  E  P  L  S  N  E  M  K  V  S  K  S  R  W  V  S  K  L  L  N  I  C  S  D  D  A  K  A  A  F  T  A  L  S  V  S  I  M  F  K  S  S  L  A  E  P  R  S  I  P  S  A  S  M  S  P  T  L  D  K  G  D  R  I  M  A  E  K  :  V  S  Y  F  F  R  Q  P  D  I  S  D  I  V  I  F  K  A  P  P  I  L  Q  :  H  I  F  G  C  S  A  G  D  V  F  I  K  R  V  V  A  L  A  G  D  Y  I  E  :  V  R  E  G  K  L  F  L  N  G  V  A  Q  D  E  D  F  I  L  E  P  I  A  Y  E  M  E  P  V  :  L  V  P  E  G  C  V  F  V  M  G  D  N  R  N  N  S  Y  D  S  H  N  W :   G  P  L  P  V  A  N  I  V  G  R  S  V  F  R  Y  W  P  P  S  R  V  S  D  T  L  H  G  S  V  M  E  K  R  V  V  A  V  S  *  P  C  L  R  W  R  C  S  T  D  F  F  H  L  F  I  L  L  L  I  I  L  C  L  L  A  H  W  I  S  C  I  I  F  P  I  P  A  A  V  V  R  S  T  I  *  T  T  L  R  M  D  Y  L  N  P  P  V  *  L  F  F  S  S  G  P  I  L  G  F  C  N  F  M  *  C  K  V  S  E  I  K  L  I  I  G  I  S  K  L  S  C  H  E  E  L  E  H  F  P  F  L  L  N  R  G  V  E  T  R  L  G  R  H  D  G  V  S  N  K  V  S  A  V  N  R  D  Q  Y  S  E  A  E  H  V  *  Y  L  L  V  F  L  L  N  V  V  N  Y  E  V  W  S  L  Y  N  N  F   </second_frame>
            <third_frame>   Y  P  P  L  F  L  R  R  V  L  A  G  R  R  Q  E  Q  N  H  R  F  P  F  P  F  T  *  Y  P  F  E  K  P  *  F  *  S  D  S  F  S  S  P  F  N  S  L  P  H  S  V  D  L  T  F  Q  F  T  D  F  F  S  N  S  L  I  S  S  I  P  M  A  F  L  R  F  L  *  G  F  Y  N  S  P  R  *  F  P  N  P  Q  F  S  T  S  C  S  V  Y  Y  N  L  *  L  W  R  S  G  S  Q  S  P  I  P  A  T  *  P  K  T  *  L  H  R  L  L  R  K  S  L  V  A  G  F  F  T  N  V  L  S  D  L  E  F  S  I  H  Q  L  K  N  P  N  Q  I  A  P  I  S  A  G  Q  N  R  N  H  G  R  *  V  I  L  T  L  P  G  R  F  R  P  V  Q  R  V  L  R  L  L  L  S  F  L  A  E  V  R  I  H  L  W  L  L  D  *  F  R  *  *  G  P  L  L  G  L  V  P  *  M  R  W  G  F  R  H  *  K  R  L  R  F  F  H  F  F  R  A  R  N  G  F  L  V  M  S  P  V  L  G  P  R  G  V  P  R  W  I  K  V  E  L  K  L  G  V  V  K  V  L  F  G  R  S  L  C  P  M  K  *  R  F  P  R  A  V  G  C  Q  S  C  *  T  S  V  L  M  M  Q  R  L  L  L  Q  L  *  V  L  A  *  C  L  S  H  L  W  L  S  Q  D  Q  F  H  L  L  P  C  P  L  L  W  I  R  V  T  V  *  W  L  K  R :   F  H  I  F  F  G  N  L  T  F  Q  T  *  *  Y  L  K  H  H  Q  S  F  S :   I  F  L  V  V  V  L  E  T  S  S  L  K  E  L  L  H  *  L  G  I  I  L  K :   C  V  R  V  N  C  F  *  M  V  L  L  K  M  K  I  S  F  *  S  L  L  R  M  K  W  N  Q  C :   L  F  L  K  A  V  C  S  *  W  G  T  I  A  I  I  A  M  I  L  T  T   : G  V  H  F  P  L  Q  T  L  S  V  G  Q  Y  S  D  I  G  P  H  P  G  C  R  T  P  C  M  D  Q  *  W  R  R  E  *  L  Q  F  L  D  P  V  *  D  G  G  V  L  L  T  S  F  I  S  L  F  F  Y  *  S  F  S  A  F  W  L  I  G  S  A  V  *  S  F  P  S  Q  L  P  L  F  D  P  Q  F  E  Q  L  *  G  W  I  I  L  I  R  L  C  D  C  F  S  Q  V  A  L  Y  W  V  F  A  I  L  C  S  A  K  S  Q  R  *  S  *  S  L  E  L  A  N  S  V  V  M  K  N  W  N  I  F  P  F  S  L  T  V  E  W  R  P  D  *  G  D  T  M  V  Y  P  T  K  F  Q  L  *  I  A  T  N  I  L  R  L  N  M  F  N  I  C  L  Y  S  C  *  M  *  *  I  M  K  Y  G  L  Y  I  T  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66992" stop="66132"/>
                    <exon start="65386" stop="65318"/>
                    <exon start="65229" stop="65158"/>
                    <exon start="65074" stop="64988"/>
                    <exon start="64900" stop="64833"/>
                    <exon start="64467" stop="64347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNFSIHRFLFQFSDFINPDGLSSLLVRFLQLSPLVSEPTILYILLGLLQFVVMAIRFTVTYSGYLAQNLASSASSKVVGCRFFHECTVRSRIFHPPAQKPESNCSDFRRTKPKPRPVSNTYSSRSFSSSSACSSFASELFGGSSNSPLVVGLISLMRSSSGSCTMNALGISPLKASSFLPFLQGSKWLPCNEPSIGSSGSSEVDKGGTETRCSESSVRSEPLSNEMKVSKSRWVSKLLNICSDDAKAAFTALSVSIMFKSSLAEPRSIPSASMSPTLDKGDRIMAEKVSYFFRQPDISDIVIFKAPPILQHIFGCSAGDVFIKRVVALAGDYIEVREGKLFLNGVAQDEDFILEPIAYEMEPVLVPEGCVFVMGDNRNNSYDSHNWGPLPVANIVGRSVFRYWPPSRVSDTLHGSVMEKRVVAVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="89149" PGL_stop="88625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89149" e_stop="88625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="89149" e_stop="88625" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89149" stop="88625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAATAGGGACAAGAACGTGTGGGAGAGTCCTGAAGAGTGGAAGCCTGAACGATTTCTTAACGGAAAGTATGATCCAATGGAATTGCAGAAGACAATGGCGTTTGGGGCTGGAAAAAGGGTATGTGCTGGTGCTCAGCAAGCAATGACAATTAGTTGCACAGCTATTGCTAGATTGATACAAGAGTTTGAATGGAGCTTAAAAGAAGGAGAAGAGAAAAATGTTGCAACAATGGGTCTTACTACTCATAAACTTCACCCGATGCTAGCTCATATCAAGCCAAGAAATTGAAGGGGAATATTTACCGTAACTTGGTAAATTTGTTGTCATGTGATCAGGAGGTTACTGGTTCAGACCATGGAAATATTCTCATGCGGAAATGTTAGATAAAACTATGAATAATAAACTCTTTGTGGTTCGGCCGTTTTAGTGCATCTGGCTGCCCAAGATTTGAACTTTCTACTCTGTATTAGCAGAGCTTGCTATTTTGTTACTTTTCAAGATATCACTATGATGATAATTTTG</gDNA_template>
            <first_frame> C  N  R  D  K  N  V  W  E  S  P  E  E  W  K  P  E  R  F  L  N  G  K  Y  D  P  M  E  L  Q  K  T  M  A  F  G  A  G  K  R  V  C  A  G  A  Q  Q  A  M  T  I  S  C  T  A  I  A  R  L  I  Q  E  F  E  W  S  L  K  E  G  E  E  K  N  V  A  T  M  G  L  T  T  H  K  L  H  P  M  L  A  H  I  K  P  R  N  *  R  G  I  F  T  V  T  W  *  I  C  C  H  V  I  R  R  L  L  V  Q  T  M  E  I  F  S  C  G  N  V  R  *  N  Y  E  *  *  T  L  C  G  S  A  V  L  V  H  L  A  A  Q  D  L  N  F  L  L  C  I  S  R  A  C  Y  F  V  T  F  Q  D  I  T  M  M  I  I  L </first_frame>
            <second_frame>  A  I  G  T  R  T  C  G  R  V  L  K  S  G  S  L  N  D  F  L  T  E  S  M  I  Q  W  N  C  R  R  Q  W  R  L  G  L  E  K  G  Y  V  L  V  L  S  K  Q  *  Q  L  V  A  Q  L  L  L  D  *  Y  K  S  L  N  G  A  *  K  K  E  K  R  K  M  L  Q  Q  W  V  L  L  L  I  N  F  T  R  C  *  L  I  S  S  Q  E  I  E  G  E  Y  L  P  *  L  G  K  F  V  V  M  *  S  G  G  Y  W  F  R  P  W  K  Y  S  H  A  E  M  L  D  K  T  M  N  N  K  L  F  V  V  R  P  F  *  C  I  W  L  P  K  I  *  T  F  Y  S  V  L  A  E  L  A  I  L  L  L  F  K  I  S  L  *  *  *  F   </second_frame>
            <third_frame>   Q  *  G  Q  E  R  V  G  E  S  *  R  V  E  A  *  T  I  S  *  R  K  V  *  S  N  G  I  A  E  D  N  G  V  W  G  W  K  K  G  M  C  W  C  S  A  S  N  D  N  *  L  H  S  Y  C  *  I  D  T  R  V  *  M  E  L  K  R  R  R  R  E  K  C  C  N  N  G  S  Y  Y  S  *  T  S  P  D  A  S  S  Y  Q  A  K  K  L  K  G  N  I  Y  R  N  L  V  N  L  L  S  C  D  Q  E  V  T  G  S  D  H  G  N  I  L  M  R  K  C  *  I  K  L  *  I  I  N  S  L  W  F  G  R  F  S  A  S  G  C  P  R  F  E  L  S  T  L  Y  *  Q  S  L  L  F  C  Y  F  S  R  Y  H  Y  D  D  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89149" stop="88859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNRDKNVWESPEEWKPERFLNGKYDPMELQKTMAFGAGKRVCAGAQQAMTISCTAIARLIQEFEWSLKEGEEKNVATMGLTTHKLHPMLAHIKPRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="92075" PGL_stop="90249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92075" e_stop="91985"/>
            <exon e_start="90743" e_stop="90582"/>
            <exon e_start="90493" e_stop="90353"/>
            <exon e_start="90256" e_stop="90249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.986" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92075" e_stop="91985" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="91984" i_stop="90744" i_length="1241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90743" e_stop="90582" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.782">
            <gDNA_intron_boundary i_start="90581" i_stop="90494" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="90493" e_stop="90353" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.611" acc_prob="0.986">
            <gDNA_intron_boundary i_start="90352" i_stop="90257" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90256" e_stop="90249" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92075" stop="91985"/>
              <exon start="90743" stop="90582"/>
              <exon start="90493" stop="90353"/>
              <exon start="90256" stop="90249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92075" stop="91985"/>
              <exon start="90743" stop="90582"/>
              <exon start="90493" stop="90412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTGGGCTGAAACTTATGGACCTATTTATTCCATCAAAACCGGCGCAAATACAATTGTTGTACTCAGTTCTAGTGAACTTGCAAAGGAG : GCTATGGTGACTAGATATTCATCCATCTCAACTAGAAAGCTAACAAACGCATTGAGAATCCTTACTTGTGATAAGAGTATAGTCGCGATAAGTGATTACGATGAGTTTCACAAGACAGCGAAGCGCCACATACTGACCAGTGTTCTAGGACCAACTGCTCAG : AAACGCTTCCGTATCCACAGGGACACCTTGGTAGAAAATGTGTCAAAGCAACTACATGATTTGGTTAGGACTGATCCTAACGAAGCAGTTAATCTAAGGAAGTCATTTCAGTCGGAACTTTTTGGTTTAGCATTGAAACAA : GCTTTGGG</gDNA_template>
            <first_frame> K  L  G  *  N  L  W  T  Y  L  F  H  Q  N  R  R  K  Y  N  C  C  T  Q  F  *  *  T  C  K  G   : G  Y  G  D  *  I  F  I  H  L  N  *  K  A  N  K  R  I  E  N  P  Y  L  *  *  E  Y  S  R  D  K  *  L  R  *  V  S  Q  D  S  E  A  P  H  T  D  Q  C  S  R  T  N  C  S   : E  T  L  P  Y  P  Q  G  H  L  G  R  K  C  V  K  A  T  T  *  F  G  *  D  *  S  *  R  S  S  *  S  K  E  V  I  S  V  G  T  F  W  F  S  I  E  T   : S  F  G </first_frame>
            <second_frame>  N  W  A  E  T  Y  G  P  I  Y  S  I  K  T  G  A  N  T  I  V  V  L  S  S  S  E  L  A  K  E  :  A  M  V  T  R  Y  S  S  I  S  T  R  K  L  T  N  A  L  R  I  L  T  C  D  K  S  I  V  A  I  S  D  Y  D  E  F  H  K  T  A  K  R  H  I  L  T  S  V  L  G  P  T  A  Q  :  K  R  F  R  I  H  R  D  T  L  V  E  N  V  S  K  Q  L  H  D  L  V  R  T  D  P  N  E  A  V  N  L  R  K  S  F  Q  S  E  L  F  G  L  A  L  K  Q  :  A  L   </second_frame>
            <third_frame>   I  G  L  K  L  M  D  L  F  I  P  S  K  P  A  Q  I  Q  L  L  Y  S  V  L  V  N  L  Q  R  R :   L  W  *  L  D  I  H  P  S  Q  L  E  S  *  Q  T  H  *  E  S  L  L  V  I  R  V  *  S  R  *  V  I  T  M  S  F  T  R  Q  R  S  A  T  Y  *  P  V  F  *  D  Q  L  L  R :   N  A  S  V  S  T  G  T  P  W  *  K  M  C  Q  S  N  Y  M  I  W  L  G  L  I  L  T  K  Q  L  I  *  G  S  H  F  S  R  N  F  L  V  *  H  *  N  K :   L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92074" stop="91985"/>
                    <exon start="90743" stop="90582"/>
                    <exon start="90493" stop="90353"/>
                    <exon start="90256" stop="90251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWAETYGPIYSIKTGANTIVVLSSSELAKEAMVTRYSSISTRKLTNALRILTCDKSIVAISDYDEFHKTAKRHILTSVLGPTAQKRFRIHRDTLVENVSKQLHDLVRTDPNEAVNLRKSFQSELFGLALKQAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="94799" PGL_stop="94352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94799" e_stop="94352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="94799" e_stop="94352" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94799" stop="94478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94799" stop="94494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94798" stop="94352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATATATGTATAATGCATAATTATAAGTGTATAGCAAGAAGATACATGTTCTTCTTGCTTTATACAAAAACAGGAACACAATATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATATCACTGCAATTGTATAATTCACAATTGCATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATATTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAGGTTATTAA</gDNA_template>
            <first_frame> *  N  I  C  I  M  H  N  Y  K  C  I  A  R  R  Y  M  F  F  L  L  Y  T  K  T  G  T  Q  Y  I  H  F  C  C  I  K  L  D  K  I  V  Y  H  C  N  C  I  I  H  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  Y  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  Y  F  R  L  L  </first_frame>
            <second_frame>  K  I  Y  V  *  C  I  I  I  S  V  *  Q  E  D  T  C  S  S  C  F  I  Q  K  Q  E  H  N  I  Y  T  S  V  V  *  S  *  I  K  L  Y  I  T  A  I  V  *  F  T  I  A  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  I  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  I  L  G  Y  * </second_frame>
            <third_frame>   K  Y  M  Y  N  A  *  L  *  V  Y  S  K  K  I  H  V  L  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  *  N  C  I  S  L  Q  L  Y  N  S  Q  L  H  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  I  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  F  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94612" stop="94352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLHVYIQFSLALYKTETELYTFVYKAREASENGEWRARFLGERRWQILANICYGAQLNQTLAIPFILGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="95734" PGL_stop="102160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95734" e_stop="95922"/>
            <exon e_start="96682" e_stop="97273"/>
            <exon e_start="97732" e_stop="97865"/>
            <exon e_start="98890" e_stop="99355"/>
            <exon e_start="99447" e_stop="99616"/>
            <exon e_start="101101" e_stop="101467"/>
            <exon e_start="101811" e_stop="102160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.771" e_score="0.998"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.846" e_score="0.997"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="95734" e_stop="95922" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95923" i_stop="96681" i_length="759"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="96682" e_stop="97273" e_length="592"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.771">
            <gDNA_intron_boundary i_start="97274" i_stop="97731" i_length="458"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97732" e_stop="97865" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="97866" i_stop="98889" i_length="1024"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98890" e_stop="99355" e_length="466"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99356" i_stop="99446" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99447" e_stop="99616" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.928">
            <gDNA_intron_boundary i_start="99617" i_stop="101100" i_length="1484"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="101101" e_stop="101467" e_length="367"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.846">
            <gDNA_intron_boundary i_start="101468" i_stop="101810" i_length="343"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="101811" e_stop="102160" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95734" stop="95922"/>
              <exon start="96682" stop="97158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95735" stop="95922"/>
              <exon start="96682" stop="96993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97135" stop="97273"/>
              <exon start="97732" stop="97865"/>
              <exon start="98890" stop="99235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97778" stop="97865"/>
              <exon start="98890" stop="99284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99355"/>
              <exon start="99447" stop="99616"/>
              <exon start="101101" stop="101129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99079" stop="99355"/>
              <exon start="99447" stop="99616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99333" stop="99355"/>
              <exon start="99447" stop="99616"/>
              <exon start="101101" stop="101467"/>
              <exon start="101811" stop="101945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99333" stop="99355"/>
              <exon start="99447" stop="99616"/>
              <exon start="101101" stop="101294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99548" stop="99616"/>
              <exon start="101101" stop="101467"/>
              <exon start="101811" stop="102160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101120" stop="101467"/>
              <exon start="101811" stop="102160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTTGATTACTTGCTTAATTTCACATCCCCAGAATCTTAAAAAATGGGGTTGAAGGAATTTTGTGGGGTTCTTTAGGGTTTTAGCTTCAAAAATTTAGGTGAAAAAGAGAGGAAACAGAGATGTTAGATGCAAGAAGGCCTCATTTTCTTGTGGGTTTTAACCCTTTCATGAATTCTGAAAAATTG : AAAATTCCATCAAAATTCATTAAACATATGGAAGGAGGGGATTCTGGAACAACAGTTCTGGTGGGTCCCAGTGGAAATGCTTGGCCTGTGGACTTAATACAGCAAGATGATGGTTTATTCTTCAATAATGGATGGGTTTCATTTGTTAAAGATCACTGCCTTGAAACAGGGGATTCTTTGGTTTTCAGATATGACGGTGATTTGCATTTCACTGTGCAAGTATTTGACGAGAGTTCATGTGAGAAGGAGGCTTCTTATAATGCTGACTGCAGTCAAGGAGCAACTGACTTGTACAATCTTGCTCTGAAAAAAAGAGACCGAGGAAACTCTGTTTTATTAGATTGTATGGTTGAAGGTGTACCGAAGAAAATGAAAAGCACCGAGATCCCTTCCGAATGCACAAGTAGCCAGGATACACATGGTCTTGCATCTAGCAAGGATGGGTACACTCCAGAAGATGCAGTTTGCTCATATGCAGGAAGAAATTATGCTGCTAGTTTTCTGGATGAAATGGAGAATGCTGGAGATGCATTAAACAGTAAAGTTACCATTGCTGTGCCAGCTCAAGCAAAGATAATCTTTAGCAATCCAG : GCAATGCTTCCTCCGAGAAAGATATGTGGTTGCCTGCACAGGAAGCAGAAAAGGTTGCTGGTTTGTTTACCTCAAGTTTGCCCAGCTTTACTAAAGTTATGAAGAGGTTCAACATCAGTGGCTCATACACCCTG : CATATCCCTTACCAATTTGCCACGGAACACCTTCCCAACTGCAAGGTGAAGATTTTACTTCATAATTTAGAAGGGAAAACTTGGACTGTGAATTCAATTCCGACTACAAGAGTACAAACATCACATACCTTTTGCGGAGGGTGGTTATCTTTTGTTCGCGACAATAACATTGATTTGGGAGATACCTGCATTTTTGAGCTTGTCCGCAAGTGTGAATTGCGTGTGCGTGTTCTTAAGGCGGAAAAGGAAGGAAGTGATTACAGTAGTAAGGTAGTTGATGAAGGACTAGTTATTGATTATGCAAAAAATTCTGGATGTAAGTCCAGGAAAGTGGGATCGAGTTCTGATCAAGCGAAGGTTATGACATATGATAAAAAAGGATCTACTCCTGAAAAAGAGAAACATGGCGATATGTTGAAGAATCATCAGCTCCATTCTCAGTCAAAGATTAGCAGTGGAGATTCAG : CTATCAGGAAACCTACTAGTTCTCAAGATAAACAGGGTTCTTTCACCAAGAGCTGTATGTCTATGAAATCAGTACCTGAAGAGAAATTAGCCGCTGAGTCTTTCATTTCCAATTTCCCTCATTTCGTGCGAATCATGAAAAAATTCAACATTAGTGGCTCTTACACCTTG : AAAGTTCCATGTCGGTTCTCAATGGAACACCTCCCAAACTGCAGAACAGAGATTGTGCTTCAGAACTTGAAAGGAGAATGTTGGACTGTAAATTCAATTCCGACTGTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGATGGGAGATATCTGCATATTTGAGCTCATTGGGAAATATGAAATGCGTGTACATGTATGTGCAATTGGGAAGAAGGGGTTAGATTACCAAAATGGGACAGCTCCTAAAGAGTCGGATATCCTTGCTTCCTTGACAAGCTAGAGACCTTTGGTGTGAAACACTGTAGGAAAGATTACTTCTTGCGTAATACAAG : GCTTGGTGTTTCACTGGAAGATAACGAAACTTGAATACATGGGATCAGAAAAGGTACACATATCAATGTTATGGAGAAGCACTTGAGTAGATTATCAAACATTTGACTAGGTTGGCCATATGCCTTCAGTAGCTTAGATGTTTTGTTGTTGGCATTGTCTGAGCACTCTTTTCAGACTCTGTGTTGTATAAGTACTGCCAGAAAAGCTTCTCATTTTCTTGATGTAAATAAGTGTGTTTTTAGTTCAATTGTCCTGAAACAATCTGCTGTTTGGTCTGTATATGTATAAACAGTAATCAGACAGAACATCTTCTAGAATGAGAAATTAAAGTTTCACTCTACTGGATCAC</gDNA_template>
            <first_frame> F  I  *  L  L  A  *  F  H  I  P  R  I  L  K  N  G  V  E  G  I  L  W  G  S  L  G  F  *  L  Q  K  F  R  *  K  R  E  E  T  E  M  L  D  A  R  R  P  H  F  L  V  G  F  N  P  F  M  N  S  E  K  L  :  K  I  P  S  K  F  I  K  H  M  E  G  G  D  S  G  T  T  V  L  V  G  P  S  G  N  A  W  P  V  D  L  I  Q  Q  D  D  G  L  F  F  N  N  G  W  V  S  F  V  K  D  H  C  L  E  T  G  D  S  L  V  F  R  Y  D  G  D  L  H  F  T  V  Q  V  F  D  E  S  S  C  E  K  E  A  S  Y  N  A  D  C  S  Q  G  A  T  D  L  Y  N  L  A  L  K  K  R  D  R  G  N  S  V  L  L  D  C  M  V  E  G  V  P  K  K  M  K  S  T  E  I  P  S  E  C  T  S  S  Q  D  T  H  G  L  A  S  S  K  D  G  Y  T  P  E  D  A  V  C  S  Y  A  G  R  N  Y  A  A  S  F  L  D  E  M  E  N  A  G  D  A  L  N  S  K  V  T  I  A  V  P  A  Q  A  K  I  I  F  S  N  P   : G  N  A  S  S  E  K  D  M  W  L  P  A  Q  E  A  E  K  V  A  G  L  F  T  S  S  L  P  S  F  T  K  V  M  K  R  F  N  I  S  G  S  Y  T  L  :  H  I  P  Y  Q  F  A  T  E  H  L  P  N  C  K  V  K  I  L  L  H  N  L  E  G  K  T  W  T  V  N  S  I  P  T  T  R  V  Q  T  S  H  T  F  C  G  G  W  L  S  F  V  R  D  N  N  I  D  L  G  D  T  C  I  F  E  L  V  R  K  C  E  L  R  V  R  V  L  K  A  E  K  E  G  S  D  Y  S  S  K  V  V  D  E  G  L  V  I  D  Y  A  K  N  S  G  C  K  S  R  K  V  G  S  S  S  D  Q  A  K  V  M  T  Y  D  K  K  G  S  T  P  E  K  E  K  H  G  D  M  L  K  N  H  Q  L  H  S  Q  S  K  I  S  S  G  D  S   : A  I  R  K  P  T  S  S  Q  D  K  Q  G  S  F  T  K  S  C  M  S  M  K  S  V  P  E  E  K  L  A  A  E  S  F  I  S  N  F  P  H  F  V  R  I  M  K  K  F  N  I  S  G  S  Y  T  L  :  K  V  P  C  R  F  S  M  E  H  L  P  N  C  R  T  E  I  V  L  Q  N  L  K  G  E  C  W  T  V  N  S  I  P  T  V  K  V  Q  T  L  H  T  F  C  G  G  W  S  A  F  V  R  E  N  D  I  Q  M  G  D  I  C  I  F  E  L  I  G  K  Y  E  M  R  V  H  V  C  A  I  G  K  K  G  L  D  Y  Q  N  G  T  A  P  K  E  S  D  I  L  A  S  L  T  S  *  R  P  L  V  *  N  T  V  G  K  I  T  S  C  V  I  Q   : G  L  V  F  H  W  K  I  T  K  L  E  Y  M  G  S  E  K  V  H  I  S  M  L  W  R  S  T  *  V  D  Y  Q  T  F  D  *  V  G  H  M  P  S  V  A  *  M  F  C  C  W  H  C  L  S  T  L  F  R  L  C  V  V  *  V  L  P  E  K  L  L  I  F  L  M  *  I  S  V  F  L  V  Q  L  S  *  N  N  L  L  F  G  L  Y  M  Y  K  Q  *  S  D  R  T  S  S  R  M  R  N  *  S  F  T  L  L  D  H </first_frame>
            <second_frame>  L  F  D  Y  L  L  N  F  T  S  P  E  S  *  K  M  G  L  K  E  F  C  G  V  L  *  G  F  S  F  K  N  L  G  E  K  E  R  K  Q  R  C  *  M  Q  E  G  L  I  F  L  W  V  L  T  L  S  *  I  L  K  N  * :   K  F  H  Q  N  S  L  N  I  W  K  E  G  I  L  E  Q  Q  F  W  W  V  P  V  E  M  L  G  L  W  T  *  Y  S  K  M  M  V  Y  S  S  I  M  D  G  F  H  L  L  K  I  T  A  L  K  Q  G  I  L  W  F  S  D  M  T  V  I  C  I  S  L  C  K  Y  L  T  R  V  H  V  R  R  R  L  L  I  M  L  T  A  V  K  E  Q  L  T  C  T  I  L  L  *  K  K  E  T  E  E  T  L  F  Y  *  I  V  W  L  K  V  Y  R  R  K  *  K  A  P  R  S  L  P  N  A  Q  V  A  R  I  H  M  V  L  H  L  A  R  M  G  T  L  Q  K  M  Q  F  A  H  M  Q  E  E  I  M  L  L  V  F  W  M  K  W  R  M  L  E  M  H  *  T  V  K  L  P  L  L  C  Q  L  K  Q  R  *  S  L  A  I  Q  :  A  M  L  P  P  R  K  I  C  G  C  L  H  R  K  Q  K  R  L  L  V  C  L  P  Q  V  C  P  A  L  L  K  L  *  R  G  S  T  S  V  A  H  T  P  C :   I  S  L  T  N  L  P  R  N  T  F  P  T  A  R  *  R  F  Y  F  I  I  *  K  G  K  L  G  L  *  I  Q  F  R  L  Q  E  Y  K  H  H  I  P  F  A  E  G  G  Y  L  L  F  A  T  I  T  L  I  W  E  I  P  A  F  L  S  L  S  A  S  V  N  C  V  C  V  F  L  R  R  K  R  K  E  V  I  T  V  V  R  *  L  M  K  D  *  L  L  I  M  Q  K  I  L  D  V  S  P  G  K  W  D  R  V  L  I  K  R  R  L  *  H  M  I  K  K  D  L  L  L  K  K  R  N  M  A  I  C  *  R  I  I  S  S  I  L  S  Q  R  L  A  V  E  I  Q  :  L  S  G  N  L  L  V  L  K  I  N  R  V  L  S  P  R  A  V  C  L  *  N  Q  Y  L  K  R  N  *  P  L  S  L  S  F  P  I  S  L  I  S  C  E  S  *  K  N  S  T  L  V  A  L  T  P  * :   K  F  H  V  G  S  Q  W  N  T  S  Q  T  A  E  Q  R  L  C  F  R  T  *  K  E  N  V  G  L  *  I  Q  F  R  L  *  R  Y  K  R  C  T  H  S  V  E  D  G  R  H  L  S  G  R  M  T  S  R  W  E  I  S  A  Y  L  S  S  L  G  N  M  K  C  V  Y  M  Y  V  Q  L  G  R  R  G  *  I  T  K  M  G  Q  L  L  K  S  R  I  S  L  L  P  *  Q  A  R  D  L  W  C  E  T  L  *  E  R  L  L  L  A  *  Y  K  :  A  W  C  F  T  G  R  *  R  N  L  N  T  W  D  Q  K  R  Y  T  Y  Q  C  Y  G  E  A  L  E  *  I  I  K  H  L  T  R  L  A  I  C  L  Q  *  L  R  C  F  V  V  G  I  V  *  A  L  F  S  D  S  V  L  Y  K  Y  C  Q  K  S  F  S  F  S  *  C  K  *  V  C  F  *  F  N  C  P  E  T  I  C  C  L  V  C  I  C  I  N  S  N  Q  T  E  H  L  L  E  *  E  I  K  V  S  L  Y  W  I   </second_frame>
            <third_frame>   Y  L  I  T  C  L  I  S  H  P  Q  N  L  K  K  W  G  *  R  N  F  V  G  F  F  R  V  L  A  S  K  I  *  V  K  K  R  G  N  R  D  V  R  C  K  K  A  S  F  S  C  G  F  *  P  F  H  E  F  *  K  I   : E  N  S  I  K  I  H  *  T  Y  G  R  R  G  F  W  N  N  S  S  G  G  S  Q  W  K  C  L  A  C  G  L  N  T  A  R  *  W  F  I  L  Q  *  W  M  G  F  I  C  *  R  S  L  P  *  N  R  G  F  F  G  F  Q  I  *  R  *  F  A  F  H  C  A  S  I  *  R  E  F  M  *  E  G  G  F  L  *  C  *  L  Q  S  R  S  N  *  L  V  Q  S  C  S  E  K  K  R  P  R  K  L  C  F  I  R  L  Y  G  *  R  C  T  E  E  N  E  K  H  R  D  P  F  R  M  H  K  *  P  G  Y  T  W  S  C  I  *  Q  G  W  V  H  S  R  R  C  S  L  L  I  C  R  K  K  L  C  C  *  F  S  G  *  N  G  E  C  W  R  C  I  K  Q  *  S  Y  H  C  C  A  S  S  S  K  D  N  L  *  Q  S  R :   Q  C  F  L  R  E  R  Y  V  V  A  C  T  G  S  R  K  G  C  W  F  V  Y  L  K  F  A  Q  L  Y  *  S  Y  E  E  V  Q  H  Q  W  L  I  H  P   : A  Y  P  L  P  I  C  H  G  T  P  S  Q  L  Q  G  E  D  F  T  S  *  F  R  R  E  N  L  D  C  E  F  N  S  D  Y  K  S  T  N  I  T  Y  L  L  R  R  V  V  I  F  C  S  R  Q  *  H  *  F  G  R  Y  L  H  F  *  A  C  P  Q  V  *  I  A  C  A  C  S  *  G  G  K  G  R  K  *  L  Q  *  *  G  S  *  *  R  T  S  Y  *  L  C  K  K  F  W  M  *  V  Q  E  S  G  I  E  F  *  S  S  E  G  Y  D  I  *  *  K  R  I  Y  S  *  K  R  E  T  W  R  Y  V  E  E  S  S  A  P  F  S  V  K  D  *  Q  W  R  F  S :   Y  Q  E  T  Y  *  F  S  R  *  T  G  F  F  H  Q  E  L  Y  V  Y  E  I  S  T  *  R  E  I  S  R  *  V  F  H  F  Q  F  P  S  F  R  A  N  H  E  K  I  Q  H  *  W  L  L  H  L   : E  S  S  M  S  V  L  N  G  T  P  P  K  L  Q  N  R  D  C  A  S  E  L  E  R  R  M  L  D  C  K  F  N  S  D  C  K  G  T  N  A  A  H  I  L  W  R  M  V  G  I  C  P  G  E  *  H  P  D  G  R  Y  L  H  I  *  A  H  W  E  I  *  N  A  C  T  C  M  C  N  W  E  E  G  V  R  L  P  K  W  D  S  S  *  R  V  G  Y  P  C  F  L  D  K  L  E  T  F  G  V  K  H  C  R  K  D  Y  F  L  R  N  T  R :   L  G  V  S  L  E  D  N  E  T  *  I  H  G  I  R  K  G  T  H  I  N  V  M  E  K  H  L  S  R  L  S  N  I  *  L  G  W  P  Y  A  F  S  S  L  D  V  L  L  L  A  L  S  E  H  S  F  Q  T  L  C  C  I  S  T  A  R  K  A  S  H  F  L  D  V  N  K  C  V  F  S  S  I  V  L  K  Q  S  A  V  W  S  V  Y  V  *  T  V  I  R  Q  N  I  F  *  N  E  K  L  K  F  H  S  T  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95839" stop="95922"/>
                    <exon start="96682" stop="97273"/>
                    <exon start="97732" stop="97865"/>
                    <exon start="98890" stop="99355"/>
                    <exon start="99447" stop="99616"/>
                    <exon start="101101" stop="101415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1758</number_coding_nucleotides>
                  <number_encoded_amino_acids>586</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KREETEMLDARRPHFLVGFNPFMNSEKLKIPSKFIKHMEGGDSGTTVLVGPSGNAWPVDLIQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDGDLHFTVQVFDESSCEKEASYNADCSQGATDLYNLALKKRDRGNSVLLDCMVEGVPKKMKSTEIPSECTSSQDTHGLASSKDGYTPEDAVCSYAGRNYAASFLDEMENAGDALNSKVTIAVPAQAKIIFSNPGNASSEKDMWLPAQEAEKVAGLFTSSLPSFTKVMKRFNISGSYTLHIPYQFATEHLPNCKVKILLHNLEGKTWTVNSIPTTRVQTSHTFCGGWLSFVRDNNIDLGDTCIFELVRKCELRVRVLKAEKEGSDYSSKVVDEGLVIDYAKNSGCKSRKVGSSSDQAKVMTYDKKGSTPEKEKHGDMLKNHQLHSQSKISSGDSAIRKPTSSQDKQGSFTKSCMSMKSVPEEKLAAESFISNFPHFVRIMKKFNISGSYTLKVPCRFSMEHLPNCRTEIVLQNLKGECWTVNSIPTVKVQTLHTFCGGWSAFVRENDIQMGDICIFELIGKYEMRVHVCAIGKKGLDYQNGTAPKESDILASLTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="124080" PGL_stop="125546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124080" e_stop="125042"/>
            <exon e_start="125129" e_stop="125546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.931"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="124080" e_stop="125042" e_length="963"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125043" i_stop="125128" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="125129" e_stop="125546" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124080" stop="124616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124085" stop="124595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124089" stop="124625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124138" stop="124713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124178" stop="124890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124187" stop="124713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124213" stop="125042"/>
              <exon start="125129" stop="125163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124281" stop="124677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124291" stop="124735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124679" stop="125042"/>
              <exon start="125129" stop="125308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124726" stop="125042"/>
              <exon start="125129" stop="125546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCTTTCACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATG : GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTCAAAGAAGTATTACGTTTATATCCAGCTGGACCGCTCTCTGTACCACACGAGTCAATGGAGGATTGTGTCATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTCGATGTAAAGGGAAATCACTTTGAGTTAATGCCATTTG</gDNA_template>
            <first_frame> A  A  F  T  N  G  G  A  T  M  D  I  F  L  I  V  I  M  V  A  S  S  S  V  F  F  F  F  L  R  K  H  A  F  S  A  K  I  H  S  K  S  K  R  V  P  G  A  G  G  A  W  P  I  I  G  H  L  H  L  L  S  G  S  E  T  E  Q  L  P  H  K  I  M  G  R  M  A  D  K  Y  G  P  I  F  G  M  K  L  G  V  H  Q  V  V  V  V  S  D  P  K  L  A  K  E  C  F  T  T  N  D  L  A  L  A  G  R  P  K  S  M  A  S  E  I  V  G  Y  K  H  A  M  F  A  L  S  A  Y  G  P  Y  W  R  E  T  R  K  I  A  T  I  E  L  F  S  A  R  R  I  E  M  L  K  H  I  R  E  F  E  V  K  S  G  I  K  E  I  Y  S  D  W  G  K  N  N  L  N  G  V  V  K  M  E  M  K  E  W  I  G  D  L  V  M  N  T  M  G  K  I  L  F  G  K  G  R  R  S  N  E  D  E  G  I  N  K  A  H  K  A  I  R  R  F  F  E  L  L  G  A  F  V  V  A  D  F  L  P  Y  L  R  W  L  D  I  G  G  H  E  K  A  M  K  E  V  S  K  E  M  D  S  V  V  E  E  W  L  T  E  H  K  T  K  R  G  I  I  K  S  G  E  E  E  D  F  M  D  V  M  L  S  I  C  E  D  R  D  L  P  G  F  D  A  D  T  A  I  K  A  N  C  M  :  G  L  L  S  A  G  T  D  T  T  I  V  T  L  T  W  A  L  C  L  L  L  N  N  Y  E  A  L  K  K  A  Q  D  E  L  D  A  H  V  G  N  N  R  W  V  Q  E  S  D  I  K  N  L  V  Y  L  Q  A  I  V  K  E  V  L  R  L  Y  P  A  G  P  L  S  V  P  H  E  S  M  E  D  C  V  I  G  G  Y  D  I  P  K  G  T  R  L  L  V  N  L  W  K  I  Q  H  D  P  N  I  W  P  N  P  H  E  F  K  P  E  R  F  L  S  T  H  K  D  V  D  V  K  G  N  H  F  E  L  M  P  F  </first_frame>
            <second_frame>  L  L  S  Q  T  E  E  R  L  W  I  F  F  *  L  L  S  W  *  L  V  P  L  F  F  S  S  F  F  A  N  M  L  S  Q  R  K  Y  I  V  K  V  K  E  Y  L  E  L  A  E  H  G  L  L  S  V  I  F  T  F  *  V  D  P  K  Q  S  N  Y  L  T  K  S  W  G  A  W  Q  I  S  T  G  Q  F  S  E  *  S  L  E  F  I  R  L  *  L  *  A  I  P  N  *  P  K  N  V  S  Q  L  T  I  *  P  *  Q  V  A  L  N  P  W  L  Q  R  L  *  A  T  N  T  L  C  L  H  F  L  L  T  V  L  T  G  E  K  Q  G  R  L  P  Q  L  N  F  S  P  L  D  E  S  R  C  S  N  T  S  E  N  L  R  *  N  Q  V  L  K  R  F  I  V  I  G  G  R  I  I  *  M  V  L  *  R  W  R  *  R  N  G  L  E  I  *  L  *  I  L  W  G  K  Y  Y  S  E  K  G  E  G  V  M  R  T  K  E  *  I  K  L  T  K  Q  F  E  D  F  S  N  C  *  E  L  L  L  W  L  I  F  Y  L  I  *  D  G  W  T  L  E  A  M  R  K  R  *  R  R  F  L  K  K  W  T  L  L  L  K  N  G  *  R  S  T  K  Q  R  E  E  L  S  N  L  V  K  K  K  I  S  W  M  S  C  F  P  F  V  K  T  E  I  C  L  V  L  M  P  I  L  L  *  K  L  I  A  W :   V  Y  Y  R  Q  V  Q  T  P  P  S  *  L  *  H  G  L  Y  V  Y  S  *  T  T  T  K  H  *  K  R  L  K  M  S  *  T  L  M  S  A  T  T  D  G  S  K  N  R  I  S  R  T  W  F  I  F  K  L  L  S  K  K  Y  Y  V  Y  I  Q  L  D  R  S  L  Y  H  T  S  Q  W  R  I  V  S  L  G  D  T  I  Y  Q  K  G  L  A  Y  *  *  T  Y  G  R  F  S  T  I  L  I  Y  G  Q  I  L  T  S  L  S  Q  R  G  S  C  R  P  T  R  M  S  M  *  R  E  I  T  L  S  *  C  H  L </second_frame>
            <third_frame>   C  F  H  K  R  R  S  D  Y  G  Y  F  F  D  C  Y  H  G  S  *  F  L  C  F  F  L  L  S  S  Q  T  C  F  L  S  E  N  T  *  *  K  *  K  S  T  W  S  W  R  S  M  A  Y  Y  R  S  S  S  P  F  E  W  I  R  N  R  A  I  T  S  Q  N  H  G  A  H  G  R  *  V  R  A  N  F  R  N  E  A  W  S  S  S  G  C  S  C  E  R  S  Q  I  S  Q  R  M  F  H  N  *  R  F  S  P  S  R  S  P  *  I  H  G  F  R  D  C  R  L  Q  T  R  Y  V  C  T  F  C  L  R  S  L  L  E  R  N  K  E  D  C  H  N  *  T  F  L  R  S  T  N  R  D  A  Q  T  H  Q  R  I  *  G  K  I  R  Y  *  R  D  L  *  *  L  G  E  E  *  F  K  W  C  C  E  D  G  D  E  G  M  D  W  R  F  S  Y  E  Y  Y  G  E  N  I  I  R  K  R  A  K  E  *  *  G  R  R  N  K  *  S  S  Q  S  N  S  K  I  F  R  I  V  R  S  F  C  C  G  *  F  F  T  L  F  K  M  A  G  H  W  R  P  *  E  S  D  E  G  G  F  *  R  N  G  L  C  C  *  R  M  V  N  G  A  Q  N  K  E  R  N  Y  Q  I  W  *  R  R  R  F  H  G  C  H  A  F  H  L  *  R  Q  R  S  A  W  F  *  C  R  Y  C  Y  K  S  *  L  H   : G  S  T  I  G  R  Y  R  H  H  H  R  N  F  N  M  G  F  M  F  T  L  E  Q  L  R  S  T  K  K  G  S  R  *  A  R  R  S  C  R  Q  Q  Q  M  G  P  R  I  G  Y  Q  E  L  G  L  S  S  S  Y  C  Q  R  S  I  T  F  I  S  S  W  T  A  L  C  T  T  R  V  N  G  G  L  C  H  W  G  I  R  Y  T  K  R  D  S  L  I  S  E  L  M  E  D  S  A  R  S  *  Y  M  A  K  S  S  R  V  *  A  R  E  V  L  V  D  P  Q  G  C  R  C  K  G  K  S  L  *  V  N  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124080" stop="125042"/>
                    <exon start="125129" stop="125545"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAFTNGGATMDIFLIVIMVASSSVFFFFLRKHAFSAKIHSKSKRVPGAGGAWPIIGHLHLLSGSETEQLPHKIMGRMADKYGPIFGMKLGVHQVVVVSDPKLAKECFTTNDLALAGRPKSMASEIVGYKHAMFALSAYGPYWRETRKIATIELFSARRIEMLKHIREFEVKSGIKEIYSDWGKNNLNGVVKMEMKEWIGDLVMNTMGKILFGKGRRSNEDEGINKAHKAIRRFFELLGAFVVADFLPYLRWLDIGGHEKAMKEVSKEMDSVVEEWLTEHKTKRGIIKSGEEEDFMDVMLSICEDRDLPGFDADTAIKANCMGLLSAGTDTTIVTLTWALCLLLNNYEALKKAQDELDAHVGNNRWVQESDIKNLVYLQAIVKEVLRLYPAGPLSVPHESMEDCVIGGYDIPKGTRLLVNLWKIQHDPNIWPNPHEFKPERFLSTHKDVDVKGNHFELMPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="124080" e_stop="125037"/>
            <exon e_start="125129" e_stop="125425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.997"/>
          <exon-only e_score="0.865"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="124080" e_stop="125037" e_length="958"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125038" i_stop="125128" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.865">
            <gDNA_exon_boundary e_start="125129" e_stop="125425" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124080" stop="124616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124085" stop="124595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124089" stop="124625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124138" stop="124713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124178" stop="124890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124187" stop="124713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124281" stop="124677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124291" stop="124735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124738" stop="125037"/>
              <exon start="125129" stop="125425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCTTTCACAAACGGAGGAGCGACTATGGATATTTTTTTGATTGTTATCATGGTAGCTAGTTCCTCTGTTTTTTTCTTCTTTCTTCGCAAACATGCTTTCTCAGCGAAAATACATAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTGATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATT : GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTCAAAGAAGTATTACGTTTATATCCAGCTGGACCGCTCTCTGTACCACACGAGTCAATGGAGGATTGTGTCATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTA</gDNA_template>
            <first_frame> A  A  F  T  N  G  G  A  T  M  D  I  F  L  I  V  I  M  V  A  S  S  S  V  F  F  F  F  L  R  K  H  A  F  S  A  K  I  H  S  K  S  K  R  V  P  G  A  G  G  A  W  P  I  I  G  H  L  H  L  L  S  G  S  E  T  E  Q  L  P  H  K  I  M  G  R  M  A  D  K  Y  G  P  I  F  G  M  K  L  G  V  H  Q  V  V  V  V  S  D  P  K  L  A  K  E  C  F  T  T  N  D  L  A  L  A  G  R  P  K  S  M  A  S  E  I  V  G  Y  K  H  A  M  F  A  L  S  A  Y  G  P  Y  W  R  E  T  R  K  I  A  T  I  E  L  F  S  A  R  R  I  E  M  L  K  H  I  R  E  F  E  V  K  S  G  I  K  E  I  Y  S  D  W  G  K  N  N  L  N  G  V  V  K  M  E  M  K  E  W  I  G  D  L  V  M  N  T  M  G  K  I  L  F  G  K  G  R  R  S  N  E  D  E  G  I  N  K  A  H  K  A  I  R  R  F  F  E  L  L  G  A  F  V  V  A  D  F  L  P  Y  L  R  W  L  D  I  G  G  H  E  K  A  M  K  E  V  S  K  E  M  D  S  V  V  E  E  W  L  T  E  H  K  T  K  R  G  I  I  K  S  G  E  E  E  D  F  M  D  V  M  L  S  I  C  E  D  R  D  L  P  G  F  D  A  D  T  A  I  K  A  N   : W  S  T  I  G  R  Y  R  H  H  H  R  N  F  N  M  G  F  M  F  T  L  E  Q  L  R  S  T  K  K  G  S  R  *  A  R  R  S  C  R  Q  Q  Q  M  G  P  R  I  G  Y  Q  E  L  G  L  S  S  S  Y  C  Q  R  S  I  T  F  I  S  S  W  T  A  L  C  T  T  R  V  N  G  G  L  C  H  W  G  I  R  Y  T  K  R  D  S  L  I  S  E  L  </first_frame>
            <second_frame>  L  L  S  Q  T  E  E  R  L  W  I  F  F  *  L  L  S  W  *  L  V  P  L  F  F  S  S  F  F  A  N  M  L  S  Q  R  K  Y  I  V  K  V  K  E  Y  L  E  L  A  E  H  G  L  L  S  V  I  F  T  F  *  V  D  P  K  Q  S  N  Y  L  T  K  S  W  G  A  W  Q  I  S  T  G  Q  F  S  E  *  S  L  E  F  I  R  L  *  L  *  A  I  P  N  *  P  K  N  V  S  Q  L  T  I  *  P  *  Q  V  A  L  N  P  W  L  Q  R  L  *  A  T  N  T  L  C  L  H  F  L  L  T  V  L  T  G  E  K  Q  G  R  L  P  Q  L  N  F  S  P  L  D  E  S  R  C  S  N  T  S  E  N  L  R  *  N  Q  V  L  K  R  F  I  V  I  G  G  R  I  I  *  M  V  L  *  R  W  R  *  R  N  G  L  E  I  *  L  *  I  L  W  G  K  Y  Y  S  E  K  G  E  G  V  M  R  T  K  E  *  I  K  L  T  K  Q  F  E  D  F  S  N  C  *  E  L  L  L  W  L  I  F  Y  L  I  *  D  G  W  T  L  E  A  M  R  K  R  *  R  R  F  L  K  K  W  T  L  L  L  K  N  G  *  R  S  T  K  Q  R  E  E  L  S  N  L  V  K  K  K  I  S  W  M  S  C  F  P  F  V  K  T  E  I  C  L  V  L  M  P  I  L  L  *  K  L  I  :  G  L  L  S  A  G  T  D  T  T  I  V  T  L  T  W  A  L  C  L  L  L  N  N  Y  E  A  L  K  K  A  Q  D  E  L  D  A  H  V  G  N  N  R  W  V  Q  E  S  D  I  K  N  L  V  Y  L  Q  A  I  V  K  E  V  L  R  L  Y  P  A  G  P  L  S  V  P  H  E  S  M  E  D  C  V  I  G  G  Y  D  I  P  K  G  T  R  L  L  V  N  L </second_frame>
            <third_frame>   C  F  H  K  R  R  S  D  Y  G  Y  F  F  D  C  Y  H  G  S  *  F  L  C  F  F  L  L  S  S  Q  T  C  F  L  S  E  N  T  *  *  K  *  K  S  T  W  S  W  R  S  M  A  Y  Y  R  S  S  S  P  F  E  W  I  R  N  R  A  I  T  S  Q  N  H  G  A  H  G  R  *  V  R  A  N  F  R  N  E  A  W  S  S  S  G  C  S  C  E  R  S  Q  I  S  Q  R  M  F  H  N  *  R  F  S  P  S  R  S  P  *  I  H  G  F  R  D  C  R  L  Q  T  R  Y  V  C  T  F  C  L  R  S  L  L  E  R  N  K  E  D  C  H  N  *  T  F  L  R  S  T  N  R  D  A  Q  T  H  Q  R  I  *  G  K  I  R  Y  *  R  D  L  *  *  L  G  E  E  *  F  K  W  C  C  E  D  G  D  E  G  M  D  W  R  F  S  Y  E  Y  Y  G  E  N  I  I  R  K  R  A  K  E  *  *  G  R  R  N  K  *  S  S  Q  S  N  S  K  I  F  R  I  V  R  S  F  C  C  G  *  F  F  T  L  F  K  M  A  G  H  W  R  P  *  E  S  D  E  G  G  F  *  R  N  G  L  C  C  *  R  M  V  N  G  A  Q  N  K  E  R  N  Y  Q  I  W  *  R  R  R  F  H  G  C  H  A  F  H  L  *  R  Q  R  S  A  W  F  *  C  R  Y  C  Y  K  S  *  L :   V  Y  Y  R  Q  V  Q  T  P  P  S  *  L  *  H  G  L  Y  V  Y  S  *  T  T  T  K  H  *  K  R  L  K  M  S  *  T  L  M  S  A  T  T  D  G  S  K  N  R  I  S  R  T  W  F  I  F  K  L  L  S  K  K  Y  Y  V  Y  I  Q  L  D  R  S  L  Y  H  T  S  Q  W  R  I  V  S  L  G  D  T  I  Y  Q  K  G  L  A  Y  *  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124080" stop="125037"/>
                    <exon start="125129" stop="125229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAFTNGGATMDIFLIVIMVASSSVFFFFLRKHAFSAKIHSKSKRVPGAGGAWPIIGHLHLLSGSETEQLPHKIMGRMADKYGPIFGMKLGVHQVVVVSDPKLAKECFTTNDLALAGRPKSMASEIVGYKHAMFALSAYGPYWRETRKIATIELFSARRIEMLKHIREFEVKSGIKEIYSDWGKNNLNGVVKMEMKEWIGDLVMNTMGKILFGKGRRSNEDEGINKAHKAIRRFFELLGAFVVADFLPYLRWLDIGGHEKAMKEVSKEMDSVVEEWLTEHKTKRGIIKSGEEEDFMDVMLSICEDRDLPGFDADTAIKANWSTIGRYRHHHRNFNMGFMFTLEQLRSTKKGSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107D06.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125230" stop="125424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARRSCRQQQMGPRIGYQELGLSSSYCQRSITFISSWTALCTTRVNGGLCHWGIRYTKRDSLISEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 141 chains have been computed
$ 
$ memory statistics:
$ 385440 bytes spliced alignments in total
$ 116 spliced alignments have been stored
$ 3322 bytes was the average size of a spliced alignment
$ 30480 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1524 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 164 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:31:00
-->
