<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:27:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745627" ref_strand="+" ref_description="SGN-E745627 [GI|47105243]">
      <seq>gagggcgtaaacgaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggaggtttgtttttttataaatttatcaatggatgcaaatgctggtagtatgtgaaacaccatcgtattatttactaatatctgattatttagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggtaggaattcttttgaaacttttagataaaggccctgatgatgatgtaagatttagagatataattcagctaacacctgctattagatgttttgatgctttcgggagtttgcttattctaagtgcatggggctcattggagttgccctctatctgttcaatattaagttggagcagaaatccttttactgttacctttctaattattaatttgttaaaaagcagaactgatgtcacctttatatgtaagtttgttctcttcctttatgtaaaacccagacagaggaagtatgcattgatgtcctggtaaagagattcattgctgggtcatgtcctggtaaagggattcatttttagggagataaatcaccaagttcgactcacagcagggtcgaagttaggtggattcatccaatatgccttagtcaaggctcataccgctcccaacactgtcctgattcaagatctaattcagttaacactgcaaatatatgtttttgaagtatttttctgaataaatgacgagtgctaagctttgggaaagctatttgtcaacccttctctcagcaacatctaaagtgcttgtgtgtgtccattttgctatgaggtagattttgatcgagtgaggtaatatgctcagaattacaattttgtaaacttgaacaattcgttctgaatgcttgaatgaaatataggcttctttgagatgtgggatcagataaatgtttcttaaaggttcttcatgcatacttcattttctgaataccagttacatgtgctttaagtcactgacgtttgaatgacatgtactcactcgtttttcttcaccatattttcaattgacaaccgtatgtcgagaatgatgaaagataatagggatgctctatttcgatgtgtaattggcagacttcacagagtgcaagtgtaagtggttattgttcatgacatgacatgtttgctgttattttatccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgtagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98" g_stop="188" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="214" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="295" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="384" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="459" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="3687" g_length="1379"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="1838" r_length="1379" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4071" g_stop="4442" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1839" r_stop="2210" r_length="372" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E745627" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="3687"/>
          <exon e_start="4071" e_stop="4442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGA</genome_strand>
        <mrna_strand>GAGGGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719036" ref_strand="+" ref_description="SGN-E719036 [FC06CC08]">
      <seq>gggcgattggcggccaatcggccgaattgagggcgtaaacgaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101" g_stop="188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="119" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="242" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="323" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="412" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="487" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="549" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="618" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="804" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4113" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="847" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E719036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATT</genome_strand>
        <mrna_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724578" ref_strand="+" ref_description="SGN-E724578 [FC24CB10]">
      <seq>ggcgattggcggccaatcggccgaattgagggcgtaaacgaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaaaaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101" g_stop="188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="118" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="241" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="322" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="411" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="486" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="548" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="617" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="803" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4088" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="821" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E724578" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGG</genome_strand>
        <mrna_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAAAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724074" ref_strand="+" ref_description="SGN-E724074 [FC22DH10]">
      <seq>aatcggccgaattgagggcgtaaacgaacaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101" g_stop="188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="104" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="227" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="308" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="397" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="472" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="534" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="603" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3683" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="785" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E724074" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGA</genome_strand>
        <mrna_strand>GGCGTAAACGAACAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719635" ref_strand="+" ref_description="SGN-E719635 [FC08BG04]">
      <seq>aatcggccgaattgagggcgtaaacgaagaccctaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcaaaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacattggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcaaaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaaaaggccgcggtggtcaaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101" g_stop="188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="104" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="227" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="308" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="397" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="472" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="534" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="603" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3680" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="782" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E719635" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAG</genome_strand>
        <mrna_strand>GGCGTAAACGAAGACCCTAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAAAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATTGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAAACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAAAGGCCGCGGTGGTCAAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710102" ref_strand="+" ref_description="SGN-E710102 [FA54AH04]">
      <seq>cgatacgaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103" g_stop="188" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="208" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="289" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="378" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="453" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="515" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="584" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="770" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4114" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="814" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E710102" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTC</genome_strand>
        <mrna_strand>CG-ATACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483598" ref_strand="+" ref_description="SGN-E483598 [cSTE-10-I17]">
      <seq>cgagggaagaaacgaaagccgaagaagagggctcttctttcgtggagaagtataatactaatcttatccttattcttataccaagatggatcggtaccagaaaagtggagaaagccaagggttgagacacctattgatgcgaatgagaattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaagatctcctantggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105" g_stop="188" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="211" r_length="126" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="292" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="381" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="518" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2479" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="538" r_length="20" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E483598" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACGAAGAAACGA-AGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAG-AAAGTGGAG-AAGCCAAGGGTTGAGACACCTATTGATGCGAATGAG-ATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGA</genome_strand>
        <mrna_strand>CGAGGGAAGAAACGAAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGTATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAAGTGGAGAAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGAATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAAGATCTCCTANTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706568" ref_strand="+" ref_description="SGN-E706568 [FA30BC10]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="764" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4135" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="829" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E706568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAA</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700050" ref_strand="+" ref_description="SGN-E700050 [FA11DH05]">
      <seq>gaagaatcgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaagggaactcgcggtaggggacgtggattcagatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="764" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4121" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="815" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E700050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTA</genome_strand>
        <mrna_strand>GAAGAATCGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAAGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710618" ref_strand="+" ref_description="SGN-E710618 [FA55DH09]">
      <seq>cattaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggccccccggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgccgggacgaagccgtggccgtggaaggggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="764" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4094" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="788" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E710618" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTC</genome_strand>
        <mrna_strand>CATTAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGCCCCCCGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCCGGGACGAA...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599044" ref_strand="+" ref_description="SGN-E599044 [52023]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggacaagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacgaagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtagagggtaggggtcgaggcagagtcgtagcttccgtggccgtggaagggagggtacaatggtccaacaggatgcccagcaagattgtggcttctacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3664" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="741" r_length="163" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E599044" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAG-GGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCC-ACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCA</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGACAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGAGGGTAGGGGTCGAGGCAGA-GTCGTAGCTTCCGTGGCCGTGGAA-GGGAGGGTACAATGGTCCAACAGGATGCCCAGCAAGATTGTGGCTTCTACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462097" ref_strand="+" ref_description="SGN-E462097 [cPRO-10-H15]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacggagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggtangggtcgaggcagaagtcgtagcttccgtggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3603" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="680" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E462097" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCC</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTANGGGTCGAGGCAGAAGTCGTAGCTTCCGTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485334" ref_strand="+" ref_description="SGN-E485334 [cSTE-17-F11]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaatatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacggagaggccgcggtggtaaaggaaggggaaggtccagaggctttccaggaaatggattatgctggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3573" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="648" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E485334" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGG</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAAT-ATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCGCGGTGGTAAAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGA-TTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583213" ref_strand="+" ref_description="SGN-E583213 [9034]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaaggttgagacacctattgatgcgaatgagattcggattactagttcaggggaggatgcgaagctatatcacttatgctatgaccttggcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagagggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaacccctntgaagaaagggcccnttcccctacctctcgagaaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggacaagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagaatttttggacctttaattttaaattgggagaaagggatctcctagtggtggacgaaaggccgcggtggtaaggaaggggaaggtcagaggctttccaggaaatggatttatgccggctgagtatgatgatcgtgggtatgatccgcaaatcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="203" r_length="124" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="284" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="376" r_length="92" r_score="0.888"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1718" i_length="81">
            <donor d_prob="0.997" d_score="0.83"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1719" g_stop="1800" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="458" r_length="82" r_score="0.841"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2386" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="535" r_length="77" r_score="0.744"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2387" i_stop="2459" i_length="73">
            <donor d_prob="0.000" d_score="0.62"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="601" r_length="66" r_score="0.913"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3557" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="659" r_length="58" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E583213" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1719" e_stop="1800"/>
          <exon e_start="2309" e_stop="2386"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAG-TCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTT-GCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGA-GGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCT-TGAAG-AAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAG-ACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGAT-CGC-AATCGGAGC</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAA-GGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTNTGAAGAAAGGGCCCNTTCC.................................................................................CCTAC-CTCTCGAGAACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGACAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGAATTTTTGGA-CCTTTAATTTTAAATTGGGAGAA.........................................................................AGGGATCTCCTAGTGGTGGACGAA-AGGCCGCGGTGGT-AAGGAAGGGGAAGGT-CAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATCGTGGGTATGATCCGCAAATCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418793" ref_strand="+" ref_description="SGN-E418793 [STM-28-I20]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctantggtggacggagaggccgcggtggtagaggaaggggaaggtccanaggcttttcangaaatggatttatgctggctgagtacgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E418793" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTANTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCANAGGCTTTTCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442889" ref_strand="+" ref_description="SGN-E442889 [cSTA-35-I20]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="509" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E442889" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481626" ref_strand="+" ref_description="SGN-E481626 [cSTD-18-J10]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2369" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="508" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E481626" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGA</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485396" ref_strand="+" ref_description="SGN-E485396 [cSTE-17-F10]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccaaaaagtggagaagccaacggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcatcgcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctcccaacaggagctggataaaaatgctgtggggtaccaacaaccattgccagcagaccaggggaaagtgtcaacagattttgactatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.907"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2367" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="506" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E485396" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATG</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAAAAAGTGGAGAAGCCAACGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCATCGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCCAACAGGAGCTGGATAAAAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGGGAAAGTGTCAACAGATTTTGACTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710671" ref_strand="+" ref_description="SGN-E710671 [FA56AG05]">
      <seq>ccctttacgaagccgaagaagagggctcttctttcgtggagaccaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgccaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggacaattgttggccttcaccaagtaacgtctattacatccactgatataactgatacctgggaaccccttgaagaaggtctcctacctctccagaccaccacgcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccacccaccattgcccgcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E710671" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG</genome_strand>
        <mrna_strand>CCCTTTACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGACCAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCCAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGACAATTGTTGGCCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACCTGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCCAGACCACCACGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481687" ref_strand="+" ref_description="SGN-E481687 [cSTD-19-I9]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttattcttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="202" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="283" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="372" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1760" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="407" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E481687" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAA</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATTCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587622" ref_strand="+" ref_description="SGN-E587622 [41158]">
      <seq>gaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110" g_stop="188" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="203" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="284" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1614" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="350" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E587622" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCA-GGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAA</genome_strand>
        <mrna_strand>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453302" ref_strand="+" ref_description="SGN-E453302 [cSTS-19-F21]">
      <seq>aagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctantggtggacggagaggccgcggtggtagaggaaggggaaggtccagaagctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111" g_stop="188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="0.928"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3576" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="652" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E453302" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTC</genome_strand>
        <mrna_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTANTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAAGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453200" ref_strand="+" ref_description="SGN-E453200 [cSTS-19-O13]">
      <seq>aagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctantggtggacggagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111" g_stop="188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3545" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="621" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E453200" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGAT</genome_strand>
        <mrna_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTANTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700077" ref_strand="+" ref_description="SGN-E700077 [FA12AC04]">
      <seq>acccctctaaggcgaagaagagggctcttctttcgcggagaagaatcttactaatcttatccttattcttataccaagatggatcggtaccagaaagtcgagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaagtgaaagtgtcaacagattttgactatgatggagaaggatctcctactggaggacgaagaggccgcggcggtcgaggaaggggaaggtccacaggctttccacgaactggatttatgccggctgaatatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111" g_stop="188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3534" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="610" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E700077" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATG</genome_strand>
        <mrna_strand>ACCCCTCTAAGGCGAAGAAGAGGGCTCTTCTTTCGCGGAGAAGAATCTTACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTCGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAAGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTACTGGAGGACGAAGAGGCCGCGGCGGTCGAGGAAGGGGAAGGTCCACAGGCTTTCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGATTTATGCCGGCTGAATATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304216" ref_strand="+" ref_description="SGN-E304216 [cLEX-6-H15]">
      <seq>aagaaacgaagccgaagaagagggctcttatttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttgaagagaaagaatcagaggagatcgtgttcaaggcaatgggcggggcaatcaacaagactgtgacaattgtggaattgctcaagaggagaattgttgggcttcaccaagtaacgtctattacatgcactgatataactgctacatgggaaccccttgaagaatgtgttctacctctcgataccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggctaagaatgctgtggggtaccaaccaccattggcagcagaccaggtgaaagtgacaacagattttgactatgatggaggatctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111" g_stop="188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.534" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2462" i_length="92">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2463" g_stop="2470" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="516" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E304216" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2463" e_stop="2470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCT</genome_strand>
        <mrna_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTATTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCGGGGCAATCAACAAGACTGTGACAATTGTGGAATTGCTCAAG.............................................................................................AGGAGAATTGTTGGGCTTCACCAAGTAACGTCTATTACATGCACTGATATAACTGCTACATGGGAACCCCTTGAAGAATGTGTTCTACC........................................................................................TCTCGATACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGCTAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGGCAGCAGACCAGGTGAAAGTGACAACAGATTTTGACTATGATGGAG............................................................................................GATCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440671" ref_strand="+" ref_description="SGN-E440671 [cSTA-18-C23]">
      <seq>aagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaagagctggataagaatgctgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111" g_stop="188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E440671" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG</genome_strand>
        <mrna_strand>AAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAAGAGCTGGATAAGAATGCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466141" ref_strand="+" ref_description="SGN-E466141 [cPRO-23-G8]">
      <seq>gaaacgaagccgaagaagagggctcttctttcgtggagaagattatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacggagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtgggaggggagggtacnatggtccacaggatgcccagccagatggtggcttctacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113" g_stop="188" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="198" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="279" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="368" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="443" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="505" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="574" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3664" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="737" r_length="163" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E466141" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCA</genome_strand>
        <mrna_strand>GAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAG-ATTATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGGAGGGGAGGGTACNATGGTCCACAGGATGCCCAGCCAGATGGTGGCTTCTACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604791" ref_strand="+" ref_description="SGN-E604791 [74930]">
      <seq>gaaacgaagccgaagaagagggctcttctttcgtgggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttccaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacggagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggcaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113" g_stop="188" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="201" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3570" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="647" r_length="70" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E604791" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGT-GGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTT-CAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGG-AAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTA</genome_strand>
        <mrna_strand>GAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481474" ref_strand="+" ref_description="SGN-E481474 [cSTD-18-G18]">
      <seq>gaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacggagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113" g_stop="188" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="199" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="280" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="369" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="444" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="506" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="575" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3557" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="631" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E481474" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGC</genome_strand>
        <mrna_strand>GAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288402" ref_strand="+" ref_description="SGN-E288402 [cLES-16-H13]">
      <seq>aaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114" g_stop="188" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="198" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="279" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="368" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="443" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="505" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2473" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E288402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGT</genome_strand>
        <mrna_strand>AAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444336" ref_strand="+" ref_description="SGN-E444336 [cSTA-42-H1]">
      <seq>aacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115" g_stop="188" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="197" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="278" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="367" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1766" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="408" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E444336" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCC</genome_strand>
        <mrna_strand>AACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573419" ref_strand="+" ref_description="SGN-E573419 [32727]">
      <seq>cgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttggcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggacaagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacgaagaggccgcggtggtagaggaaggggaaggtccagaggcttttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcgcgagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaattggtccacaggatgcccagcaagatggtggcttctacaatcaaagaagctcccatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117" g_stop="188" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="196" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="277" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="366" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="441" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="503" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="573" r_length="70" r_score="0.942"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3680" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="755" r_length="182" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E573419" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTT-GCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGC-TTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCG-GAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAA-TGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATC-AAGAAGCTCCCATGCAG</genome_strand>
        <mrna_strand>CGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGACAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGCGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAATTGGTCCACAGGATGCCCAGCAAGATGGTGGCTTCTACAATCAAAGAAGCTCCCATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399683" ref_strand="+" ref_description="SGN-E399683 [cSTC-2-G11]">
      <seq>cgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacggagaggccgcggtggtagaggaaggggaaggtccanaggctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117" g_stop="188" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="195" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="276" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="365" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="440" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="502" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="571" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3557" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="627" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E399683" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGC</genome_strand>
        <mrna_strand>CGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCANAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292574" ref_strand="+" ref_description="SGN-E292574 [cLET-16-O2]">
      <seq>agccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccangtgaaagtgtcaacagattttgactatgatggaggatctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="2673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120" g_stop="188" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="192" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="273" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="362" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="437" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="499" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2462" i_length="92">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2463" g_stop="2470" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="507" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E292574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2463" e_stop="2470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCT</genome_strand>
        <mrna_strand>AGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCANGTGAAAGTGTCAACAGATTTTGACTATGATGGAG............................................................................................GATCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584246" ref_strand="+" ref_description="SGN-E584246 [10068]">
      <seq>gagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggcgaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaacccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130" g_stop="188" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="182" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="263" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1620" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="335" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E584246" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTT</genome_strand>
        <mrna_strand>GAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGCGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721888" ref_strand="+" ref_description="SGN-E721888 [FC15CD06]">
      <seq>agggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcaaaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaaaaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131" g_stop="188" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="181" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="262" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="351" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="426" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="488" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="557" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3575" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="631" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E721888" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGT</genome_strand>
        <mrna_strand>AGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAAACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAAAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726166" ref_strand="+" ref_description="SGN-E726166 [LA11AB01]">
      <seq>tcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="3863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136" g_stop="188" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="176" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="257" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="346" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="483" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="552" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3563" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="614" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E726166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGT</genome_strand>
        <mrna_strand>TCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729681" ref_strand="+" ref_description="SGN-E729681 [LA21DB06]">
      <seq>ctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140" g_stop="188" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="172" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="253" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="342" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="417" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="479" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="548" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="734" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4147" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="811" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E729681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCT</genome_strand>
        <mrna_strand>CTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729547" ref_strand="+" ref_description="SGN-E729547 [LA21BF01]">
      <seq>aaaatccatacccaacccactcgcctctttcttcttcctcacgagtgctaacgctcttattctaattcctatgactccatatattagcaccggggggggccgatacccaagtctcccactcctgttgctgattaagagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117" stop="4408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.772"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="282" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="371" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="446" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="763" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4071" g_stop="4108" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="801" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E729547" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGT</genome_strand>
        <mrna_strand>ATATATTAGCACCGGGGGGGGCCGATACCCAAGTCTCCCACTCCTGTTGCTGATTAAGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602578" ref_strand="+" ref_description="SGN-E602578 [55646]">
      <seq>cagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcaggggaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagattgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggacaagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacgaagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaatggttgacaggatgcccatgaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtggtgcttaaatggtcaagcaagcttgacgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="75" stop="4460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="375" g_stop="485" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="192" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="281" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="356" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="418" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="487" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="673" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4071" g_stop="4175" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="778" r_length="105" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E602578" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="375" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAG</genome_strand>
        <mrna_strand>CAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGGAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGACAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAATGGTTGACAGGATGCCCATGAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAAATGGTCAAGCAAGCTTGACGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707036" ref_strand="+" ref_description="SGN-E707036 [FA31DE07]">
      <seq>cataaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="75" stop="4444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="375" g_stop="485" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="192" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="281" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="356" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="418" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="487" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="673" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4071" g_stop="4144" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="747" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E707036" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="375" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGT</genome_strand>
        <mrna_strand>CATAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701562" ref_strand="+" ref_description="SGN-E701562 [FA16BC11]">
      <seq>gactttatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcaaaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccaccaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="156" stop="3998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="451" g_stop="485" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="116" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="205" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="280" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="342" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="411" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="597" r_length="186" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E701562" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="451" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG</genome_strand>
        <mrna_strand>GACTTTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAAAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCACCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442877" ref_strand="+" ref_description="SGN-E442877 [cSTA-35-G6]">
      <seq>aagctatatcacttatgctatgaccttgcttcaggagaaagaatcaaaggagattgtgttcaaggcaatgggcagggcaatcaacaaaactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaagccttctacctctctagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgtggggttccaacaaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="152" stop="2102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="452" g_stop="485" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="115" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="204" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="279" r_length="75" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E442877" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="452" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG</genome_strand>
        <mrna_strand>AAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAAAGGAGATTGTGTTCAAGGCAATGGGCAGGGCAATCAACAAAACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAAGCCTTCTACC........................................................................................TCTCTAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709778" ref_strand="+" ref_description="SGN-E709778 [FA53AD12]">
      <seq>atatcacttatgctatgaccttgcttcaggagaaccaatcacaggagatcgtgttcaaggcaatgggcagggcaatcaacaacactgtgacaattgtggaattgatcaacaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaacaaggagctggataagaatgctgtggggtaccaaccaccattgccagcaaaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctactggaggaccaagaggccgcggtggtcgaggaaggggaacgtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtggctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="157" stop="3845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="457" g_stop="485" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="110" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="199" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="274" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="336" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="405" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3502" g_stop="3545" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="449" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E709778" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="457" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGAT</genome_strand>
        <mrna_strand>ATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACCAATCACAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAACACTGTGACAATTGTGGAATTGATCAAC.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAACAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAAACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTACTGGAGGACCAAGAGGCCGCGGTGGTCGAGGAAGGGGAACGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697604" ref_strand="+" ref_description="SGN-E697604 [FA03CC01]">
      <seq>cacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="161" stop="4532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="461" g_stop="485" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="106" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="195" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="270" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="332" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="401" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="587" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4071" g_stop="4232" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="749" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E697604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="461" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCC</genome_strand>
        <mrna_strand>CACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604291" ref_strand="+" ref_description="SGN-E604291 [74424]">
      <seq>atcaacaagactgtgacaattgtggaattgattaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggcctcctacctctcgagaccaccaggcatgtatcaatgatcacaattactctctccaaaaaggagctggacaagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacgaagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaatggtccacaggatgcccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtggtgcttaaaatggtcaagcaagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1120" stop="4460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1420" g_stop="1455" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="125" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="200" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="262" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="331" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="517" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4071" g_stop="4168" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="616" r_length="99" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E604291" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1420" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTT-AAATGGTCAAGCTTGAAGAA</genome_strand>
        <mrna_strand>ATCAACAAGACTGTGACAATTGTGGAATTGATTAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGCCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGACAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAATGGTCCACAGGATGCCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAAAATGGTCAAGCAAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331084" ref_strand="+" ref_description="SGN-E331084 [cTOD-6-K8]">
      <seq>attgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacccctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggaggtttgtttttttataaatttatcaatggatgcaaatgctggtagtatgtgaaacaccatcgtattatttactaatatctgattatttagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccaaaggctttccaggtaggaattcttttgaaacttttagataaaggccctgatgatgatgtaagatttagagatataattcagctaacacctgctattagatgttttgatgctttncggagtttgcttattctaagtgcatggggctcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1255" stop="2966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1555" g_stop="1637" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="158" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2309" g_stop="2666" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="516" r_length="358" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E331084" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1555" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTG</genome_strand>
        <mrna_strand>ATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................CCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAAAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTNCGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588418" ref_strand="-" ref_description="SGN-E588418 [41970]">
      <seq>ggtcttcacccaagtaacgtctattacatccactgatataacgtgatagcatgggaacctccttgaagaaggcctcttacctctcgagaccaccaggcatgtgatcaatgatcacaattactctctccgaaaaggagctggataagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacgaagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtacgatgatggtggctatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaatggtccacaggatgcccagccagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgcttttttttttctttgtttttcatgatatcttctatctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1261" stop="4649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1561" g_stop="1637" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="0.83"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="157" r_length="76" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="219" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="288" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="474" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4071" g_stop="4349" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="755" r_length="281" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E588418" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588418" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1561" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTCAC-CAAGTAACGTCTATTACATCCACTGATATAAC-TGATA-CATGGGAACC-CCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGT-ATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG--TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATT</genome_strand>
        <mrna_strand>GGTCTTCACCCAAGTAACGTCTATTACATCCACTGATATAACGTGATAGCATGGGAACCTCCTTGAAGAAGGCCTCTTACC........................................................................................TCTCGAGACCACCAGGCATGTGATCAATGATCACAATTACTCTCTCCGAAAAGGAGCTGGATAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTACGATGATGGTGGCTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAATGGTCCACAGGATGCCCAGCCAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590356" ref_strand="-" ref_description="SGN-E590356 [43950]">
      <seq>aggcatgtatcaatgatcacaattactctctccaaaaaaggagcctggataagaatgctgtggggtaccaacaaccattgccagcaggaccaggtgaaagtgtcaacagattgttgactatgatggagaaggatctcctagtggtggacggagaggccacggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgctggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaacggtccacaggatgcccagccagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtggtgcttaaatggtcaaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttccaggaccgcccgtatgtggtgatgcttttttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattcttttatttgtctttgtttgttgaaatgttcagtgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1439" stop="4744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1739" g_stop="1800" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.85"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="128" r_length="64" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="197" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="383" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4071" g_stop="4444" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="763" r_length="380" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E590356" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590356" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1739" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGTATCCATGATTACAATTACCCTCGCC-AAAAAGGAG-CTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCA-GACCAGGTGAAAGTGTCAACAGATT-TTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTC-AAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTT-CAGGACCGCCCGTATGTGGTGATG----TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATC</genome_strand>
        <mrna_strand>AGGCATGTATCAATGATCACAATTACTCTCTCCAAAAAAGGAGCCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGGACCAGGTGAAAGTGTCAACAGATTGTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGGAGAGGCCACGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCTGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAACGGTCCACAGGATGCCCAGCCAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAAATGGTCAAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTTATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591045" ref_strand="-" ref_description="SGN-E591045 [44748]">
      <seq>catgtatcaatgatcacaattactctctccaaaaaggagctggataagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggtggacgaagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtacgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaatggtccacaggatgcccagccagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgcttttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1442" stop="4729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1742" g_stop="1800" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="121" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="190" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="376" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4071" g_stop="4428" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="736" r_length="360" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="767"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E591045" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591045" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1742" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG--TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAA</genome_strand>
        <mrna_strand>CATGTATCAATGATCACAATTACTCTCTCCAAAAAGGAGCTGGATAAGAATGCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTACGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAATGGTCCACAGGATGCCCAGCCAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691723" ref_strand="+" ref_description="SGN-E691723 [LH_Ea06N17]">
      <seq>ccgttattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgcggaaggggaggttacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgggggcgtggaaggggaactcatggtaggggacgtggattcacatctaatgggccgatccaaggcggtggtgcttagatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcatttgatagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatatatttcaggaccgcccgtatgtggagatgatttcttttctttgcttttcaggatatcttctatcttaattctcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1460" stop="4656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1755" g_stop="1800" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="0.89"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="108" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="177" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="363" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4071" g_stop="4356" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="649" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E691723" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1755" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCT</genome_strand>
        <mrna_strand>CCGTTATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGCGGAAGGGGAGGTTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGGGGGCGTGGAAGGGGAACTCATGGTAGGGGACGTGGATTCACATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAGATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTTGATAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATATATTTCAGGACCGCCCGTATGTGGAGATGATTTCTTTTCTTTGCTTTTCAGGATATCTTCTATCTTAATTCTCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571923" ref_strand="-" ref_description="SGN-E571923 [30996]">
      <seq>ccaggcatgtatcaatgatcacaattactctctccgtaaaggagctggacaagaatgctgttgggtaccaacaaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtgctggacgaagaggccgcggtggtagaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccgtggccgtggaaggggagggtacaatggtccacaggatgcccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtggtgcttaaatggtcaagcaagcttgaagaatacagagattatgtgctatgagtgcctgccccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgctttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgacgagcagcacattctttgatttgtctttgtttgttgaaatgttcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="2008" stop="4738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="126" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="195" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="381" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4071" g_stop="4438" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="757" r_length="376" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E571923" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571923" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGT----CAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG-TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGT---GAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTG</genome_strand>
        <mrna_strand>GTACCAACAACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGCTGGACGAAGAGGCCGCGGTGGTAGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCGTGGCCGTGGAAGGGGAGGGTACAATGGTCCACAGGATGCCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGGTGCTTAAATGGTCAAGCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCCCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGACGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561914" ref_strand="-" ref_description="SGN-E561914 [20292]">
      <seq>ctttccaggaaatggatttatgctgcctgagtacgatgatgctgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagcttccctggccgtggaaggggagggtacaacggtccacaggatgcccagccagatggtgccttctaccatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgtggtaggggacgtggattcagatctaatgggccgatccaaggcggtgctgcttaactggtccaagcttgcagaagacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatctggtgatgcttttttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattcttttaccttgtctttgtttgttgaaatgttcactgttgatcttgttcgtacaaccacatgactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3194" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3494" g_stop="3687" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4071" g_stop="4470" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="600" r_length="406" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E561914" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561914" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3494" e_stop="3687"/>
          <exon e_start="4071" e_stop="4470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGT-CAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG----TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGA-TTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAAATTTGCCTTGTTTTTA</genome_strand>
        <mrna_strand>CTTTCCAGGAAATGGATTTATGCTGCCTGAGTACGATGATGCTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTTCCCTGGCCGTGGAAGGGGAGGGTACAACGGTCCACAGGATGCCCAGCCAGATGGTGCCTTCTACCATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGTGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGCGGTGCTGCTTAACTGGTCCAAGCTTGCAGAAGACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATCTGGTGATGCTTTTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTTACCTTGTCTTTGTTTGTTGAAATGTTCACTGTTGATCTTGTTCGTACAACCACATGACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216194" ref_strand="+" ref_description="SGN-E216194 [cLEL-13-D13](-)">
      <seq>tgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcaagacagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgagaccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgaataacatgagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3221" stop="4637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3521" g_stop="3687" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4071" g_stop="4339" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="436" r_length="269" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E216194" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3521" e_stop="3687"/>
          <exon e_start="4071" e_stop="4339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTC</genome_strand>
        <mrna_strand>TGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCAAGACAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGAATAACATGAGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217621" ref_strand="+" ref_description="SGN-E217621 [cLEL-25-A15](-)">
      <seq>gatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3345" stop="4709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3645" g_stop="3687" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4071" g_stop="4408" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="381" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="398"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E217621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3645" e_stop="3687"/>
          <exon e_start="4071" e_stop="4408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTG</genome_strand>
        <mrna_strand>GATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225631" ref_strand="+" ref_description="SGN-E225631 [cLEL-17-K2](-)">
      <seq>ggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgttgaaatgttcagtgttgatcttgtctcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3797" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4097" g_stop="4446" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="374"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E225631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4097" e_stop="4446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTT</genome_strand>
        <mrna_strand>GGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418794" ref_strand="+" ref_description="SGN-E418794 [STM-28-I20]">
      <seq>atttcaacaaacaaagacaaataaaagaatgtgctgctcactaacgaaattacacttgaccaaccacctaatcaagcagagaataaagatagaagatatcatgaaaaacaaagaaaaaaaaaaaagcatcaccacatacggggcggtcctgaaatctataattagtctactctgattacagatagataacctactgttaacacggagtaactaaggaatgaaaaacatagaacatggagcaggcactcatagcacataatctctgtattcttcaagctttgaccatttaagcaccaccgccttggatcggcccattagatctgaatccacgtccccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="4730" stop="3799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4430" g_stop="4099" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E418794" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4430" e_stop="4099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAACAAACAAAGACAAATCAAAGAATGTGCTGCTCACTAACGAAATTACACTTGACCAACCACCTAATCAAGCAGAGAATAAAGATAGAAGATATCATGAAAAACAAAG---AAAAGAAAA-CATCACCACATAC-GGGCGGTCCTGAAATCTATAATTAGTCTACTCTGATTACAGATAGATAACCTACTGTTAACACGGAGTAACTAACGAATGAAAAACATAGAACATGGAGCAGGCACTCATAGCACATAATCTCTGTATTCTTCAAGC-TTGACCATTTAAGCACCACCTCCTTGGATCGGCCCATTAGATCTGAATCCACGTCCCCTA</genome_strand>
        <mrna_strand>ATTTCAACAAACAAAGACAAATAAAAGAATGTGCTGCTCACTAACGAAATTACACTTGACCAACCACCTAATCAAGCAGAGAATAAAGATAGAAGATATCATGAAAAACAAAGAAAAAAAAAAAAGCATCACCACATACGGGGCGGTCCTGAAATCTATAATTAGTCTACTCTGATTACAGATAGATAACCTACTGTTAACACGGAGTAACTAAGGAATGAAAAACATAGAACATGGAGCAGGCACTCATAGCACATAATCTCTGTATTCTTCAAGCTTTGACCATTTAAGCACCACCGCCTTGGATCGGCCCATTAGATCTGAATCCACGTCCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551760" ref_strand="+" ref_description="SGN-E551760 [cTSB-1-M1]">
      <seq>gacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgttgaaatgttcagtgttgatcttgttcgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3804" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4104" g_stop="4454" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E551760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4104" e_stop="4454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</genome_strand>
        <mrna_strand>GACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225188" ref_strand="+" ref_description="SGN-E225188 [cLEL-17-K2](-)">
      <seq>cagatctaatgggccgatcacaagaaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgttgaaatgttcagtgttgatcttgttcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3814" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4114" g_stop="4455" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4456" i_stop="4600" i_length="145">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4601" g_stop="4614" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="357" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E225188" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4114" e_stop="4455"/>
          <exon e_start="4601" e_stop="4614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTAATGGGCCGATC-CAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAAATTTGCCTTGTTTTTAGGTGGCAGAATACCCCCAATCGCATATTTTCTGCTGTTTTTAAAGCTCTTTGTACGCAAGTGAATCAAATCTTCGGCTTCTATAGTGATGTTGAACTCTCTTAGATTGGTGTATGCTTCTTAATGGGCAGAGGAATATGAGACA</genome_strand>
        <mrna_strand>CAGATCTAATGGGCCGATCACAAGAAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAAA.................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217565" ref_strand="+" ref_description="SGN-E217565 [cLEL-25-A5](-)">
      <seq>atgggccgatcccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3822" stop="4709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4122" g_stop="4408" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="305"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E217565" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4122" e_stop="4408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGCCGAT-CCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTG</genome_strand>
        <mrna_strand>ATGGGCCGATCCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613515" ref_strand="+" ref_description="SGN-E613515 [63291]">
      <seq>ccgatccaaggcggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgctttttttttctttgtttttcatgatatcttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3827" stop="4641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4127" g_stop="4351" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E613515" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4127" e_stop="4351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG-TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCT</genome_strand>
        <mrna_strand>CCGATCCAAGGCGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTCTTTGTTTTTCATGATATCTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595412" ref_strand="+" ref_description="SGN-E595412 [38684]">
      <seq>gtggtgcttaaatggtcaagcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgntgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgctttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3840" stop="4709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4140" g_stop="4417" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E595412" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4140" e_stop="4417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGCTTAAATGGTC----AAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCG-TGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG-TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTT</genome_strand>
        <mrna_strand>GTGGTGCTTAAATGGTCAAGCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGNTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568752" ref_strand="+" ref_description="SGN-E568752 [13083]">
      <seq>cttaaatggtcaagcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgcttttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3856" stop="4709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4146" g_stop="4418" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E568752" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4146" e_stop="4418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAATGGT----CAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG--TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTT</genome_strand>
        <mrna_strand>CTTAAATGGTCAAGCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599677" ref_strand="+" ref_description="SGN-E599677 [52671]">
      <seq>gtttttcattccttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgcttttttttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgttgaaatgttcagtgttgatcttgttcgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="3910" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4210" g_stop="4454" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="248" polyA_stop="264"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E599677" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4210" e_stop="4454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATG--TTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</genome_strand>
        <mrna_strand>GTTTTTCATTCCTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGCTTTTTTTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744682" ref_strand="+" ref_description="SGN-E744682 [GI|30519751]">
      <seq>gagaccattatttctacaacacataccatttcttcttcctcaatttttcttctatatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaactacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaacaaaagtcgaaaagttcgggatttgaagtttatgagtttatatttatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgccccccttcctctgtcttcttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatatatcaaaagaatataataagaccttttgtctttgatgcaaatgtttgtaggtgcatcaaacatctatacttctaatttttatttttatttttgccctctattgtaagcttgtattgtaataaggtcatgttatacatatattgtatcaaatgttcctatgttttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8510" stop="11870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8809" g_stop="9023" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="537" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11569" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="1287" r_length="750" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1290" polyA_stop="1318"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E744682" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1287</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8809" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACCATTATTTCTACAACACATACCATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTT</genome_strand>
        <mrna_strand>GAGACCATTATTTCTACAACACATACCATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAACTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611951" ref_strand="+" ref_description="SGN-E611951 [61708]">
      <seq>atttcttcttcctcaaattttcttctatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgtaacattttggttagtactgcaaatgccttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggggcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaatccaccaaggccacattttgacatggctcaacctgcttgggaacacattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagcaatgtaggaggggctggatcaattcaatcagtacaaattaaaggttcaagaaccaattggatggcaatggctagaaattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8536" stop="11277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8836" g_stop="9023" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="508" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="10977" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="666" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E611951" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8836" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="10977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGG</genome_strand>
        <mrna_strand>ATTTCTTCTTCCTCAAATTTTCTTC--TATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGTAACATTTTGGTTAGTACTGCAAATGCCTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGGGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAATCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAACACATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGCAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGTTCAAGAACCAATTGGATGGCAATGGCTAGAAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408978" ref_strand="+" ref_description="SGN-E408978 [PPI-12-D14]">
      <seq>atttcttcttcctcaaattttcttctatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgtaacattttggttagtactgcaaatgccttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggggcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaatccaccaaggccacattttgacatggctcaacctgcttgggaacacattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaggtgggagtagatttacaataaatggaagggactattttgagctattaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8536" stop="11190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8836" g_stop="9023" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="508" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="10890" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="578" r_length="70" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E408978" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8836" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="10890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGA</genome_strand>
        <mrna_strand>ATTTCTTCTTCCTCAAATTTTCTTC--TATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGTAACATTTTGGTTAGTACTGCAAATGCCTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGGGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAATCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAACACATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTG-AAAAAGGTGGGAGTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288253" ref_strand="+" ref_description="SGN-E288253 [cLES-16-M11]">
      <seq>ttcttcttcctcaatttttcttctatatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacctgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8538" stop="11265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8838" g_stop="9023" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="508" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="10965" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="654" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E288253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8838" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="10965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGG</genome_strand>
        <mrna_strand>TTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACCTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569939" ref_strand="+" ref_description="SGN-E569939 [14445]">
      <seq>ttcttcctcaaattttcttctatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgtaacattttggttagtactgcaaatgccttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8541" stop="9966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8841" g_stop="9023" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9666" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="252" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E569939" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8841" e_stop="9023"/>
          <exon e_start="9596" e_stop="9666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCA</genome_strand>
        <mrna_strand>TTCTTCCTCAAATTTTCTTC--TATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGTAACATTTTGGTTAGTACTGCAAATGCCTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359529" ref_strand="+" ref_description="SGN-E359529 [cLHT-31-L24]">
      <seq>ttcctctatttttcttctatatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaaaattctaaatggtgcttaaagggaacatctattacaattacagccactaattgttgtccaccaaattttgcactccctaacaataatggtggatggtgcaacccaccaaggccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8544" stop="10145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8844" g_stop="9023" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9845" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="430" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E359529" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8844" e_stop="9023"/>
          <exon e_start="9596" e_stop="9845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTT</genome_strand>
        <mrna_strand>TTCCTCTATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAAATTCTAAATGGTGCTTAAAGGGAACATCTATTACAATTACAGCCACTAATTGTTGTCCACCAAATTTTGCACTCCCTAACAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359363" ref_strand="+" ref_description="SGN-E359363 [cLHT-31-L12]">
      <seq>ttcctcaatttttcttctatatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcttaaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8544" stop="10100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8844" g_stop="9023" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9800" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="385" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E359363" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8844" e_stop="9023"/>
          <exon e_start="9596" e_stop="9800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACT</genome_strand>
        <mrna_strand>TTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCTTAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366482" ref_strand="+" ref_description="SGN-E366482 [cLPT-13-O7]">
      <seq>tttttttttttttttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattatggttagaactgcaaatgctttctctgcttctggatggatgagcgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtattcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttataaaattatgtgtgattataatcaagattctaaatggtgcattaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8553" stop="10104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8853" g_stop="9023" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9804" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="380" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E366482" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8853" e_stop="9023"/>
          <exon e_start="9596" e_stop="9804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTATGGTTAGAACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGCGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTATTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTATAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATTAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356490" ref_strand="+" ref_description="SGN-E356490 [cLHT-20-B3]">
      <seq>tttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcttaaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcactccctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8565" stop="10185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8865" g_stop="9023" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9885" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="449" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E356490" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8865" e_stop="9023"/>
          <exon e_start="9596" e_stop="9885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTAC</genome_strand>
        <mrna_strand>TTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCTTAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTCCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422398" ref_strand="+" ref_description="SGN-E422398 [STM-40-I22]">
      <seq>agaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgtaacattttggttagtactgcaaatgccttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggggcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaatccaccaaggccacattttgacatggctcaacctgcttgggaacacattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagcaatgtaggaggggctggatcaattcaatcagtacaaattaaaggttcaagaaccaattggatggcaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattctttaatattgcttcatccaattggcaatttgggcaaaacatattcagctctattaacttctaatttttttttaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8574" stop="11430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8874" g_stop="9023" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="472" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11142" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="795" r_length="323" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E422398" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8874" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGAC-AAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGTAACATTTTGGTTAGTACTGCAAATGCCTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGGGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAATCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAACACATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGCAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGTTCAAGAACCAATTGGATGGCAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTTAATATTGCTTCATCCAATTGGCAATTTGGGCAAAACATATTC-AGCTCTATTAACTTCTAATTTTTTTTTAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448386" ref_strand="+" ref_description="SGN-E448386 [cSTS-2-F22]">
      <seq>agaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgtaacattttggttagtactgcaaatgccttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggggcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaatccaccaaggccacattttgacatggctcaacctgcttgggaacacattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagcaatgtaggaggggnctggatcaattcaatcagtacaaattaaaggttcaagaaccaattggatggcaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatattgcttcatccaattggcaatttgggcaaacatattcaagctctattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8574" stop="11419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8874" g_stop="9023" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="472" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11119" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="773" r_length="301" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E448386" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8874" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGG-CTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAA</genome_strand>
        <mrna_strand>AGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGTAACATTTTGGTTAGTACTGCAAATGCCTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGGGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAATCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAACACATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGCAATGTAGGAGGGGNCTGGATCAATTCAATCAGTACAAATTAAAGGTTCAAGAACCAATTGGATGGCAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATATTGCTTCATCCAATTGGCAATTTGGGCAAACATATTCAAGCTCTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448300" ref_strand="+" ref_description="SGN-E448300 [cSTS-2-F23]">
      <seq>agaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgtaacattttggttagtactgcaaatgccttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggggcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaatccaccaaggccacattttgacatggctcaacctgcttgggaacacattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagcaatgtaggaggggctggatcaattcaatcagtacaaattaaaggttcaagaaccaattggatggcaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatattgcttcatccaattggcaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8574" stop="11395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8874" g_stop="9023" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="472" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11095" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="748" r_length="276" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E448300" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8874" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGG</genome_strand>
        <mrna_strand>AGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGTAACATTTTGGTTAGTACTGCAAATGCCTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGGGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAATCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAACACATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGCAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGTTCAAGAACCAATTGGATGGCAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATATTGCTTCATCCAATTGGCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345313" ref_strand="+" ref_description="SGN-E345313 [cTOF-13-L6]">
      <seq>caaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttggaaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8584" stop="11418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8884" g_stop="9023" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="462" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11119" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="762" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E345313" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8884" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAA</genome_strand>
        <mrna_strand>CAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGAAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347294" ref_strand="+" ref_description="SGN-E347294 [cTOF-33-A15]">
      <seq>tttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8615" stop="11419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8915" g_stop="9023" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="431" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11119" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="731" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E347294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8915" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAA</genome_strand>
        <mrna_strand>TTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282920" ref_strand="+" ref_description="SGN-E282920 [cLER-15-P14]">
      <seq>tctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8663" stop="11224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8963" g_stop="9023" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="383" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="10924" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="488" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E282920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8963" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="10924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATC</genome_strand>
        <mrna_strand>TCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352020" ref_strand="+" ref_description="SGN-E352020 [cTOS-13-I14]">
      <seq>tttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaanttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8689" stop="11435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8989" g_stop="9023" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="357" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11136" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="674" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E352020" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8989" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAA</genome_strand>
        <mrna_strand>TTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAANTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747204" ref_strand="+" ref_description="SGN-E747204 [GI|7263071]">
      <seq>actgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9361" stop="10210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9661" g_stop="9910" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E747204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9661" e_stop="9910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGT</genome_strand>
        <mrna_strand>ACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367776" ref_strand="+" ref_description="SGN-E367776 [cLPT-14-J17]">
      <seq>gagcatcatgtggtcaatgttataaaattatgtgtgattataatcaagattctaaatggtgcattaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctctgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctgttaacttctaatttaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9380" stop="11439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9680" g_stop="9917" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10820" g_stop="11139" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="558" r_length="320" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E367776" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9680" e_stop="9917"/>
          <exon e_start="10820" e_stop="11139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAA</genome_strand>
        <mrna_strand>GAGCATCATGTGGTCAATGTTATAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATTAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTCTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTGTTAACTTCTAATTTAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221315" ref_strand="+" ref_description="SGN-E221315 [cLEL-22-M22](-)">
      <seq>tttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9477" stop="11448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9777" g_stop="9917" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10820" g_stop="11147" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="469" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E221315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9777" e_stop="9917"/>
          <exon e_start="10820" e_stop="11147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAA</genome_strand>
        <mrna_strand>TTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621554" ref_strand="-" ref_description="SGN-E621554 [75301]">
      <seq>cattttgacatggctcacctgcttggaacacattggtatctacagaggtggcattgttcctgtcatgtaccaaaggattccttgtgtgaaaaaggtggagttagatttacaataaatggaagngactattttgagctatttaatgataagcaatgtaggaggggctggatcaattcaatcagtacaaattaaaggttcaagaaccaattggatggcaatggctagaaattgggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatattgcttcatccaattggcaatttgggcaaacatattcaagctctattaacttctaatttttttttaaaaaagtcgaaaagttcgggatttgaagtttatgagtttatatatatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgcccccttcctctgtcttcttttattcgatattcgaaatatattggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgaattttttattttttatatattaaaagaattacaataattaagacactttgtctttgatgcaaatgtttgtaggtgtatcaaacatatatactaagcttgtattgtaataaggtcatattatacatatattttatcaaatgttcctatgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9541" stop="11871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9841" g_stop="9917" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10820" g_stop="11475" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="727" r_length="652" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E621554" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621554" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9841" e_stop="9917"/>
          <exon e_start="10820" e_stop="11475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTA-TTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCA-TATTTATTTTTTATATATCAAAAGAA-T---ATAA-TAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACT</genome_strand>
        <mrna_strand>CATTTTGACATGGCTCA-CCTGCTT-GGAACACATTGGTATCTACAGAGGTGGCATTGTTCCTGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTG-AAAAAGGTGGAGTTAGATTTACAATAAATGGAAGNGACTATTTTGAGCTATTTAATGATAAGCAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGTTCAAGAACCAATTGGATGGCAATGGCTAGAAATT-GGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATATTGCTTCATCCAATTGGCAATTTGGGCAAACATATTCAAGCTCTATTAACTTCTAATTTT-------TTTTTAA-AAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATATATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCG-CCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATATTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGAATTTTTTATTTTTTATATATTAAAAGAATTACAATAATTAAGACACTTTGTCTTTGATGCAAATGTTTGTAGGTGTATCAAACATATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221206" ref_strand="+" ref_description="SGN-E221206 [cLEL-22-M22](-)">
      <seq>aaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttccaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9572" stop="11448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9872" g_stop="9917" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10820" g_stop="11147" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="374" r_length="328" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E221206" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9872" e_stop="9917"/>
          <exon e_start="10820" e_stop="11147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAA</genome_strand>
        <mrna_strand>AAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTCCAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578314" ref_strand="+" ref_description="SGN-E578314 [LE12CB12]">
      <seq>tttgaagcgaaacataggaacatttgatacaatatatgtataacatgaccttattacaatacaagcttacaatagagggcaaaaataaaaataaaaattagaagtatagatgtttgatgcacctacaaacatttgcatcaaagacaaaaggtcttattatattcttttgatatataaaaaataaatatgcaaatttcacactacactacatacacacaataaatttcaaatatatttatgtttccagcaccttcggactagagttcatgaacttacttcatcaataatcgagccagtatatttcgaatatcgaataaaagaagacagaggaaggggggcgggctgctttcagtaaaacagtaagcacgccgctgcctatcacacgtataaatataaactcataaacttcaaatcccgaacttttcgacttttgttttttttttaaattagaagttaatagagcttgagtatgtttgtccaaatcgccaattggatgaagcaacatttaagaatgttttagtgacaccatctgatgttgtgaccttaaatgacaaagattgtccattaagaaatgcatttgattgccaattggccccccaatttctagccattgtcatccaattggttcttgatcctttaatttgtactgattgaattgatccagcccctcctacattacttatcattaatagctcaaaatagtcccttccatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="11877" stop="10556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11577" g_stop="10856" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E578314" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11577" e_stop="10856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGCAAAACATAGGAACATTTGATACAATATATGTATAACATGACCTTATTACAATACAAGCTTACAATAGAGGGCAAAAATAAAAATAAAAATTAGAAGTATAGATGTTTGATGCACCTACAAACATTTGCATCAAAGACAAAAGGTCTTATTATATTCTTTTGATATATAAAAAATAAATATGCAAATTTCACACTACACTACATACACACAATAAATTTCAAATATATTTATGTTTCCAGCACCTTCGGACTAGAGTTCATGAACTTACTTCATCAATAATCGAGCCAGTATATTTCGAATATCGAATAAAAGAAGACAGAGGAAGGGGGGCGGGCTGCTTTCAGTAAAACAGTAAGCACGCCGCTGCCTATCACACGTATAAATATAAACTCATAAACTTCAAATCCCGAACTTTTCGACTTTTGTTTTTTTTTTTTTTAAAATTAGAAGTTAATAGAGCTTGAATATGTTTGTCCAAATCGCCAATTGGATGAAGCAACATTTAAGAATGTTTTAGTGACACCATCTGATGTTGTGACCTTAAATGACAAAGATTGTCCATTAAGAAATGCATTTGATTGCCAATTGGCCCCCCAATTTCTAGCCATTGTCATCCAATTGGTTCTTGATCCTTTAATTTGTACTGATTGAATTGATCCAGCCCCTCCTACATTACTTATCATTAATAGCTCAAAATAGTCCCTTCCATTTATT</genome_strand>
        <mrna_strand>TTTGAAGCGAAACATAGGAACATTTGATACAATATATGTATAACATGACCTTATTACAATACAAGCTTACAATAGAGGGCAAAAATAAAAATAAAAATTAGAAGTATAGATGTTTGATGCACCTACAAACATTTGCATCAAAGACAAAAGGTCTTATTATATTCTTTTGATATATAAAAAATAAATATGCAAATTTCACACTACACTACATACACACAATAAATTTCAAATATATTTATGTTTCCAGCACCTTCGGACTAGAGTTCATGAACTTACTTCATCAATAATCGAGCCAGTATATTTCGAATATCGAATAAAAGAAGACAGAGGAAGGGGGGCGGGCTGCTTTCAGTAAAACAGTAAGCACGCCGCTGCCTATCACACGTATAAATATAAACTCATAAACTTCAAATCCCGAACTTTTCGACTTTTG----TTTTTTTTTT-AAATTAGAAGTTAATAGAGCTTGAGTATGTTTGTCCAAATCGCCAATTGGATGAAGCAACATTTAAGAATGTTTTAGTGACACCATCTGATGTTGTGACCTTAAATGACAAAGATTGTCCATTAAGAAATGCATTTGATTGCCAATTGGCCCCCCAATTTCTAGCCATTGTCATCCAATTGGTTCTTGATCCTTTAATTTGTACTGATTGAATTGATCCAGCCCCTCCTACATTACTTATCATTAATAGCTCAAAATAGTCCCTTCCATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607259" ref_strand="+" ref_description="SGN-E607259 [23220]">
      <seq>ctattttgagctattaatgataagcaatgtagaggggctggatcaattcaatcagtacaaattaaaggttcaagaaccaattggatggcaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatattgcttcatccaattggcaatttgggcaaacatattcaagctctattaacttctaatttttttttaaaaaagtcgaaaagttcgggatttgaagtttatgagtttatatatatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgcccccttcctctgtcttcttttattcgatattcgaaatatattggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgaattttttattttttatatattaaaagaattacaataattaagacactttgtctttgatgcaaatgtttgtaggtgtatcaaacatatatactaagcttgtattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10571" stop="11724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10871" g_stop="11491" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E607259" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10871" e_stop="11491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCA-TATTTATTTTTTATATATCAAAAGAA-T---ATAA-TAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTT</genome_strand>
        <mrna_strand>CTATTTTGAGCTATTAATGATAAGCAATGTA-GAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGTTCAAGAACCAATTGGATGGCAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATATTGCTTCATCCAATTGGCAATTTGGGCAAACATATTCAAGCTCTATTAACTTCTAATTTT-------TTTTTAA-AAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATATATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCG-CCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATATTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGAATTTTTTATTTTTTATATATTAAAAGAATTACAATAATTAAGACACTTTGTCTTTGATGCAAATGTTTGTAGGTGTATCAAACATATATAC-T-AAGCTTGTATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352942" ref_strand="+" ref_description="SGN-E352942 [cTOS-11-P12]">
      <seq>ttaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaacaaaagtcgaaaagttcgggatttgaagtttatgagtttatatttatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgccccccttcctctgtcttcttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatatatcaaaagaatataataagaccttttgtctttgatgcaaatggttgtaggtgcatcaaacatctatacttctaatttttatttttatttttgccctctattgtaagcttgtattgtaaataaggtcatgttatacatatattgtatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10633" stop="11855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10933" g_stop="11554" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E352942" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10933" e_stop="11554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGT-AATAAGGTCATGTTATACATATATTGTATCAA</genome_strand>
        <mrna_strand>TTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGGTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAAATAAGGTCATGTTATACATATATTGTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356646" ref_strand="+" ref_description="SGN-E356646 [cTOS-21-L10]">
      <seq>ttaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaacaaaagtcgaaaagttcgggatttgaagtttatgagtttatatttatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgccccccttcctctgtcttcttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatatatcaaaagaatataataagaccttttgtctttgatgcaaatgtttgtaggtgcatcaaacatctatacttctaatttttatttttatttttgccctctattgtaagcttgtattgtaataaggtcatgntatacatatattgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10633" stop="11852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10933" g_stop="11552" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E356646" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10933" e_stop="11552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATC</genome_strand>
        <mrna_strand>TTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGNTATACATATATTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358958" ref_strand="+" ref_description="SGN-E358958 [cLHT-24-J7]">
      <seq>aacatttaagaatgttttagtgacaccatctgatgttgcttcatccaattggcaatttggacaaacatattcaagctctattaacttctaatttaaaaaaacaaaagtcgaaaagttcgggatttgaagtttatgagtttatatttatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgcccccttcctctgtctttttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatatatcaaaagaatataataagaccttttgtctttgatgcaaatgtttgtaggtgcatcaaacatatatacttctaatttttattttaatttttgccctctattgtaagcttgtattgtaataaggtcatgttatacatatgttgtatcaaatgttcttatgttttgcttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10768" stop="11878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11034" g_stop="11577" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E358958" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11034" e_stop="11577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTTGCTTCAAA</genome_strand>
        <mrna_strand>AACATTTAAGAATGTTTTAGTGACACCATC-T-GATGTTGCTTCATCCAATTGGCAATTTGGACAAACATATTCAAGCTCTATTAACTTCTAA-TTT-------AAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCG-CCCCCTTCCTCTGTCTTTTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATATATACTTCTAATTTTTATTTTAATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATGTTGTATCAAATGTTCTTATGTTTTGCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366616" ref_strand="-" ref_description="SGN-E366616 [cLPT-13-P18]">
      <seq>atttatacgtgtgataggcagcggcgtgcttactgttttactgaaaacagcccgccccccttcctctgtctttttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgcaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatacatccaaagaatataataagaccttttgtctttgatgcaaatgtttgtaggtgcatccaacacatatacttctaatttttattttaatttttgccctctattgtaagcttgtattgtaataaggtcatgttatacatagagtgtatcaaatgttcctatgttttgcttcataaaaaaaaaaaactaaaactcgagacaagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10886" stop="14542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11186" g_stop="11577" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="404"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E366616" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366616" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11186" e_stop="11577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTTGCTTCAAA</genome_strand>
        <mrna_strand>ATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAACAGCCCGCCCCCCTTCCTCTGTCTTTTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGCAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATACATCCAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCCAACACATATACTTCTAATTTTTATTTTAATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATAGAGTGTATCAAATGTTCCTATGTTTTGCTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543240" ref_strand="+" ref_description="SGN-E543240 [TUS-64-P7]">
      <seq>attaaccacaaacaatatactataagcttttaatttttgataattttgatggcattacaaagtgtttttgtaattacttttgtgttattttcatgtgtaaatgcacttagctccaattactatgatcaaacatgtccagatgcagaatcaactattagacaagttgtaaaaaaagcaatgtcaaatgataaaacagttccagctgctcttttgaggatgcactttcatgattgttttgtcaggggttgtgatggctctgtgctgttgaattcaacaaaaaacaaccaagcggagaaagatggacctccaaatatttcattacattctttttatgttattgacgttgctaagaaacaaattgaaaatatgtgtcctggcgttgtctcttgtgctgatattttagctcttgcagctagagatgctgtcactctttctggagggccttattgggccgtaccaaaaggtagaaaagatggaagaatttctatagccagtgaaacaagacaattacctggcccaaattttaacatctctcaattgcaacaaagctttctccaaagaggcctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="14411" stop="16811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14711" g_stop="14953" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14954" i_stop="15433" i_length="480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15434" g_stop="15622" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="432" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15623" i_stop="16372" i_length="750">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16373" g_stop="16511" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="571" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E543240" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14711" e_stop="14953"/>
          <exon e_start="15434" e_stop="15622"/>
          <exon e_start="16373" e_stop="16511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGGGTACGTAAATTTAGTTTCTATTTCTACATATAAACATAAATTTTAAAATATTGTAATTTATTAATCGATATGTAGTTTAACCTATGATAATATATAATATTAGCTATAATTTTATTTGGTTATAAATTACCGAGATACTATATTATGTCATCTAATTAATCAGTAGCTTTTAATTATAGAGGAAACAATGTGTTTAATTACTTAAAGGGCTAAAGAACTACCTTAGCCCATGAATAAAACAAGTTAATATAATGTTAATTTATTTACACGTAAATCAATATATCAAGATGAGCTTAAAATGAGCGATATAATCAGGTTCATATGTGATCGATTATATATAATTGTATAAATATCTTTTACCCTATCAATCTTTTGAACGTGAAACTTTCATGTTGTAATATTAGGACATAGTATATGCTATATGGTTATTAATTACTAACTAACTTATGGTATTTTTTTTCTCCTCAAATTTTTATGAAGGGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTTGTGAGTTCTACTATAACCTTTTAGATTTTCGGCGTGTGAAATTTACTAACTAGATTAATTTGAATTTGCATCATAGAAAATTATATTTAGAACAAAATGAAGAAGAATACGATGCTAAAATAATACAACGTAACTATTAGGGTTTTTTTGATAGTGTGCATGATAATACCATCAAATACGATGTTTTAATAATGTTGAAATTAGTTGTGTTTGATATTATCTTTTGTCGATTGTTTGATTAGTTGTATTAATTGATAGGGAGTTTAGAATAGAAATAGTAACTCCACCCACCATCGTATTATTAATATCATGATTTACTATATTAAAAATAGTACTAAATATAGTGTATAACTAATATATCTATATCTAAGTTGAAAACACTGTCAAACAAGAGCTAATACATTATTGTTTAATTTCTCTAACACCTTCTATCAAAAGAGAACTTACTTTAAACATATGTAGACAGTGCACAAATGCATTTTCTATAATCATGGTATTTTAGTCGGTTAGTTTTTGTGCACACCTCGACTAGTCAGGGGTATATGTTACCTCCCACTGATATACGTAGTTTGTAACATTACTTATCAAGGCTCGAACAGATAAAAAAATATCATCTAATATTCTTACCTTTGCTGGAATTTAAACTTGAATTTCGATAATTCTCAACCCATTTCATTATTATAAATAAATTTTATGTTATTTTCTAGAGGTTATATATGAAAGACTAATGTTGAAATTATTTTTTTTCAGTCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATTTCTATAGCCAGTGAAACAAGACAATTACCTGGCCCAAATTTTAACATCTCTCAATTGCAACAAAGCTTCTCCCAAAGAGGCCTTTCTT</genome_strand>
        <mrna_strand>ATTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATTTCTATAGCCAGTGAAACAAGACAATTACCTGGCCCAAATTTTAACATCTCTCAATTGCAACAAAGCTTTCTCCAAAGAGGCCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303790" ref_strand="+" ref_description="SGN-E303790 [cLEX-4-M4]">
      <seq>ttaaccacaaacaatatactataagcttttaatttttgataattttgatggcattacaaagtgtttttgtaattacttttgtgttattttcatgtgtaaatgcacttagctccaattactatgatcaaacatgtccagatgcagaatcaactattagacaagttgtaaaaaaagcaatgtcaaatgataaaacagttccagctgctcttttgaggatgcactttcatgattgttttgtcaggggttgtgatggctctgtgctgttgaattcaacaaaaaacaaccaagcggagaaagatggacctccaaatatttcattacattctttttatgttattgacgttgctaagaaacaaattgaaaatatgtgtcctggcgttgtctcttgtgctgatattttagctcttgcagctagagatgctgtcactctttctggagggccttattgggccgtaccaaaaggtagaaaagatggaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="14412" stop="16723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14712" g_stop="14953" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14954" i_stop="15433" i_length="480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15434" g_stop="15622" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="431" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15623" i_stop="16372" i_length="750">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16373" g_stop="16423" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="482" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E303790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14712" e_stop="14953"/>
          <exon e_start="15434" e_stop="15622"/>
          <exon e_start="16373" e_stop="16423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGGGTACGTAAATTTAGTTTCTATTTCTACATATAAACATAAATTTTAAAATATTGTAATTTATTAATCGATATGTAGTTTAACCTATGATAATATATAATATTAGCTATAATTTTATTTGGTTATAAATTACCGAGATACTATATTATGTCATCTAATTAATCAGTAGCTTTTAATTATAGAGGAAACAATGTGTTTAATTACTTAAAGGGCTAAAGAACTACCTTAGCCCATGAATAAAACAAGTTAATATAATGTTAATTTATTTACACGTAAATCAATATATCAAGATGAGCTTAAAATGAGCGATATAATCAGGTTCATATGTGATCGATTATATATAATTGTATAAATATCTTTTACCCTATCAATCTTTTGAACGTGAAACTTTCATGTTGTAATATTAGGACATAGTATATGCTATATGGTTATTAATTACTAACTAACTTATGGTATTTTTTTTCTCCTCAAATTTTTATGAAGGGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTTGTGAGTTCTACTATAACCTTTTAGATTTTCGGCGTGTGAAATTTACTAACTAGATTAATTTGAATTTGCATCATAGAAAATTATATTTAGAACAAAATGAAGAAGAATACGATGCTAAAATAATACAACGTAACTATTAGGGTTTTTTTGATAGTGTGCATGATAATACCATCAAATACGATGTTTTAATAATGTTGAAATTAGTTGTGTTTGATATTATCTTTTGTCGATTGTTTGATTAGTTGTATTAATTGATAGGGAGTTTAGAATAGAAATAGTAACTCCACCCACCATCGTATTATTAATATCATGATTTACTATATTAAAAATAGTACTAAATATAGTGTATAACTAATATATCTATATCTAAGTTGAAAACACTGTCAAACAAGAGCTAATACATTATTGTTTAATTTCTCTAACACCTTCTATCAAAAGAGAACTTACTTTAAACATATGTAGACAGTGCACAAATGCATTTTCTATAATCATGGTATTTTAGTCGGTTAGTTTTTGTGCACACCTCGACTAGTCAGGGGTATATGTTACCTCCCACTGATATACGTAGTTTGTAACATTACTTATCAAGGCTCGAACAGATAAAAAAATATCATCTAATATTCTTACCTTTGCTGGAATTTAAACTTGAATTTCGATAATTCTCAACCCATTTCATTATTATAAATAAATTTTATGTTATTTTCTAGAGGTTATATATGAAAGACTAATGTTGAAATTATTTTTTTTCAGTCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATT</genome_strand>
        <mrna_strand>TTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545430" ref_strand="+" ref_description="SGN-E545430 [TUS-68-E10]">
      <seq>gtttatttttgcatatgtacaatcaaatcaatacaaatcctcaaattaatcccttcacaaactcctctccatccttagaaacacacatttgacatattattacccacacaaatgaataaaaaatcaaaccaaaccaaaaattacaagttattttcgtgcaataaaacattcctctaataaaaaaggactccatgctcagaccaagcttcaattaacaaatctacaatcatgccttatttcttgaccagaaccgctgatactgctcatcttaatcattgaatcagcaaaagctttaaagaactcgtgttgggaattggcaaaatttaaaacaagtgttttggttcttgaatttgtgagtaaagttgaatcagaagaaaaaagacctttcttttgcaatattaatttataatacgcgttatcgaataaaaatgtcgtagtatccatagtagcccctgcattttttgttgtgtttttaacagggcatattttctttaaattagctgcaaacgatgcgtctagtgatggatcgacgtcgtttttgctatcgaagttttctattctgtttcggaatgatgaacaatgagaaaatccaagagtgtgtcctcctgaatattaaaaaaaaaaaaaagttagaaaaaagtaatttgataattttattataagttcagtaattatacgtgaaattaattcgtaaattatacctgaaagtgcaaccaaatcatctaaagaaaggcctctttgggagaagctttgttgcaattgagagatgttaaaatttgggccaggtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17536" stop="16145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17236" g_stop="16445" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E545430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17236" e_stop="16445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTTTGCTATCGAAGTTTTCTATTCTGTTTCGGAATGATGAACAATGAGAAAATCCAAGAGTGTGTCCTCCTGAATATTAAAAAAAAAAAAAAGTTAGAAAAAAGTAATTTGATAATTTTATTATAAGTTCAGTAATTATACGTGAAATTAATTCGTAAATTATACCTGAAAGTGCAACCAAATCATCTAAAGAAAGGCCTCTTTGGGAGAAGCTTTGTTGCAATTGAGAGATGTTAAAATTTGGGCCAGGTAATTG</genome_strand>
        <mrna_strand>GTTTATTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTTTGCTATCGAAGTTTTCTATTCTGTTTCGGAATGATGAACAATGAGAAAATCCAAGAGTGTGTCCTCCTGAATATTAAAAAAAAAAAAAAGTTAGAAAAAAGTAATTTGATAATTTTATTATAAGTTCAGTAATTATACGTGAAATTAATTCGTAAATTATACCTGAAAGTGCAACCAAATCATCTAAAGAAAGGCCTCTTTGGGAGAAGCTTTGTTGCAATTGAGAGATGTTAAAATTTGGGCCAGGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543239" ref_strand="+" ref_description="SGN-E543239 [TUS-64-P7](-)">
      <seq>gttgcactttcaggaggacacactcttggattttctcattgttcatcattccgaaacagaatagaaaacttcgatagcaaaaacgacgtcgatccatcactagacgcatcgtttgcagctaatttaaagaaaatatgccctgttaaaaacacaacaaaaaatgcaggggctactatggatactacgacattttttcgataacgcgtattataaattaatattgcaaaagaaaggtcttttttcttctgattcaactttactcacaaattcaagaaccaaaacacttgttttaaattttgccaattcccaacacgagttctttaaagcttttgctgattcaatgattaagatgagcagtatcagcggttctggtcaagaaataaggcatgattgtagatttgttaattgaagcttggtctgagcatggagtccttttttattagaggaatgttttattgcacgaaaataacttgtaatttttggtttggtttgattttttattcatttgtgtgggtaataatatgtcaaatgtgtgtttctaaggatggagaggagtttgtgaagggattaatttgaggatttgtattgatttgattgtacatatgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="16319" stop="70589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16523" g_stop="16535" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16536" i_stop="16631" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16632" g_stop="17242" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="622" r_length="609" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E543239" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16523" e_stop="16535"/>
          <exon e_start="16632" e_stop="17242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCACTTTCAGGTATAATTTACGAATTAATTTCACGTATAATTACTGAACTTATAATAAAATTATCAAATTACTTTTTTCTAACTTTTTTTTTTTTTTAATATTCAGGAGGACACACTCTTGGATTTTCTCATTGTTCATCATTCCGAAACAGAATAGAAAACTTCGATAGCAAAAACGACGTCGATCCATCACTAGACGCATCGTTTGCAGCTAATTTAAAGAAAATATGCCCTGTTAAAAACACAACAAAAAATGCAGGGGCTACTATGGATACTACGACATTTTTATTCGATAACGCGTATTATAAATTAATATTGCAAAAGAAAGGTCTTTTTTCTTCTGATTCAACTTTACTCACAAATTCAAGAACCAAAACACTTGTTTTAAATTTTGCCAATTCCCAACACGAGTTCTTTAAAGCTTTTGCTGATTCAATGATTAAGATGAGCAGTATCAGCGGTTCTGGTCAAGAAATAAGGCATGATTGTAGATTTGTTAATTGAAGCTTGGTCTGAGCATGGAGTCCTTTTTTATTAGAGGAATGTTTTATTGCACGAAAATAACTTGTAATTTTTGGTTTGGTTTGATTTTTTATTCATTTGTGTGGGTAATAATATGTCAAATGTGTGTTTCTAAGGATGGAGAGGAGTTTGTGAAGGGATTAATTTGAGGATTTGTATTGATTTGATTGTACATATGCAAAAATAAACAACTTC</genome_strand>
        <mrna_strand>GTTGCACTTTCAG................................................................................................GAGGACACACTCTTGGATTTTCTCATTGTTCATCATTCCGAAACAGAATAGAAAACTTCGATAGCAAAAACGACGTCGATCCATCACTAGACGCATCGTTTGCAGCTAATTTAAAGAAAATATGCCCTGTTAAAAACACAACAAAAAATGCAGGGGCTACTATGGATACTACGACA-TTTT-TTCGATAACGCGTATTATAAATTAATATTGCAAAAGAAAGGTCTTTTTTCTTCTGATTCAACTTTACTCACAAATTCAAGAACCAAAACACTTGTTTTAAATTTTGCCAATTCCCAACACGAGTTCTTTAAAGCTTTTGCTGATTCAATGATTAAGATGAGCAGTATCAGCGGTTCTGGTCAAGAAATAAGGCATGATTGTAGATTTGTTAATTGAAGCTTGGTCTGAGCATGGAGTCCTTTTTTATTAGAGGAATGTTTTATTGCACGAAAATAACTTGTAATTTTTGGTTTGGTTTGATTTTTTATTCATTTGTGTGGGTAATAATATGTCAAATGTGTGTTTCTAAGGATGGAGAGGAGTTTGTGAAGGGATTAATTTGAGGATTTGTATTGATTTGATTGTACATATGCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308780" ref_strand="+" ref_description="SGN-E308780 [cLEZ-14-B15]">
      <seq>tttatttttgcatatgtacaatcgaatcaatacaaatcctcaaattaatcccttcacaaactcctctccatccttagaaacacacatttgacatattattacccacacaaatgaataaaaaatcaaaccaaaccaaaaattacaagttattttcgtgcaataaaacattcctctaataaaaaaggactccatgctcagaccaagcttcaattaacaaatctacaatcatgccttatttcttgaccagaaccgctgatactgctcatcttaatcattgaatcagcaaaagctttaaagaactcgtgttgggaattggcaaaatttaaaacaagtgttttggttcttgaatttgtgagtaaagttgaatcagaagaaaaaagacctttcttttgcaatattaatttataatacgcgttatcgaataaaaatgtggtagtatccatagtagcccctgcatttgttgttgtgtttttaacagggcatatgttctttaaattagctgcaaacgatgcgtctagtgatggatcgacgtcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17535" stop="16398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17235" g_stop="16698" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E308780" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17235" e_stop="16698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTT</genome_strand>
        <mrna_strand>TTTATTTTTGCATATGTACAATCGAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTGGTAGTATCCATAGTAGCCCCTGCATTTGTTGTTGTGTTTTTAACAGGGCATATGTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729682" ref_strand="+" ref_description="SGN-E729682 [LA21DB07]">
      <seq>cctccgtcgacttcaactggccggagttgcttccaatttccgatgacggagcaaaacgccgacgaagccaacactgttcaaacctcgaatttcgacaatgtagaaccggcaatagttgcttgctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccgtctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttaaggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgatcggagtggaatcaaggtctctggaaagcgaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatggttcttatattgtgaggtgttgtgtgaaaggctcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcatcggcagacagagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaaaataactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaaagttgncaggtggcaaatcagctcactgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcatacagaggaacagtatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17573" stop="20688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17873" g_stop="18146" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="323" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="450" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="521" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19417" g_stop="19489" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="594" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20108" g_stop="20388" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="876" r_length="282" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E729682" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17873" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19417" e_stop="19489"/>
          <exon e_start="20108" e_stop="20388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGTCGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTAT-AAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAA</genome_strand>
        <mrna_strand>CCTCCGTCGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCCGACGAAGCCAACACTGTTCAAACCTCGAATTTCGACAATGTAGAACCGGCAATAGTTGCTTGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCGTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG.........................................................................GTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAAATAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAAAGTTGNCAGGTGGCAAATCAGCTCACTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAGGAACAGTATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691788" ref_strand="+" ref_description="SGN-E691788 [LH_Ea07A10]">
      <seq>cgttttaaactggccggggttgcttccaatttccgatgacggcgtaaaacgccgacgaagccaacactgttcaaacttcgaatcttgacaatgtaaaaccggaaatagttgcttgctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttatggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgataggagtgaaatcaaggtctctggaaagagaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatgcttcttatattgtgaggtgttgtgtgaaaggatcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcatcggcagacagagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaagactactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaacaagcaaggtggcaaatcacctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17580" stop="20651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17880" g_stop="18146" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="316" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="443" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="514" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19417" g_stop="19489" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="587" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20108" g_stop="20351" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="831" r_length="244" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E691788" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17880" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19417" e_stop="19489"/>
          <exon e_start="20108" e_stop="20351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACA</genome_strand>
        <mrna_strand>CGTTTTAAACTGGCCGGGGTTGCTTCCAATTTCCGATGACGGCGTAAAACGCCGACGAAGCCAACACTGTTCAAACTTCGAATCTTGACAATGTAAAACCGGAAATAGTTGCTTGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTATGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATAGGAGTGAAATCAAGGTCTCTGGAAAGAGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGCTTCTTATATTGTGAG.........................................................................GTGTTGTGTGAAAGGATCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACTACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGGCAAATCACCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544728" ref_strand="+" ref_description="SGN-E544728 [TUS-67-D9]">
      <seq>cttcaactggccggagttgcttccaatttccgatgacggagcaaaacgctgacgaagccaacactgttcaaacttcgaatattgacaatgtagaactggcaatagttgatggctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttaaggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgatcggagtggaatcaaggtctctggaaagcgaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatggttcttatattgtgaggtgttgtgtgaaaggctcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcattggcagacagagaaggatatattgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17583" stop="20433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17883" g_stop="18146" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="313" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="440" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="511" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19417" g_stop="19489" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="584" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20108" g_stop="20133" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="610" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E544728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17883" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19417" e_stop="19489"/>
          <exon e_start="20108" e_stop="20133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAAT</genome_strand>
        <mrna_strand>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG.........................................................................GTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545224" ref_strand="+" ref_description="SGN-E545224 [TUS-67-P10]">
      <seq>cttcaactggccggagttgcttccaatttccgatgacggagcaaaacgctgacgaagccaacactgttcaaacttcgaatattgacaatgtagaactggcaatagttgatggctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttaaggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgatcggagtggaatcaaggtctctggaaagcgaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatggttcttatattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17583" stop="19640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17883" g_stop="18146" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="313" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="440" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19340" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="508" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E545224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17883" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGT</genome_strand>
        <mrna_strand>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544879" ref_strand="+" ref_description="SGN-E544879 [TUS-67-H1]">
      <seq>cttcaactggccggagttgcttccaatttccgatgacggagcagaacgctgacgaagccaacactgttcaaacttcgaatattgacaatgtagaactggcaatagttgatggctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaatgaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattgtgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgcctatggattgtgcataattgggttggctccgacccacattgctgttaaggatgaaagcggagttacttcggttgatttcaatgtggggaagtctgatcggagtggaatcaaggtctctggaaagcgaaagaagacgctcaacgtttcgagtctaatacagcattatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17583" stop="19610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17883" g_stop="18146" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="313" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="440" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19310" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="477" r_length="37" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E544879" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17883" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAA</genome_strand>
        <mrna_strand>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAGAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAATGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTGTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCTATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTGTTAAGGATGAAAGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-ACGCTCAACGTTTCGAGTCTAATACAGCATTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310209" ref_strand="+" ref_description="SGN-E310209 [cLEZ-8-H24]">
      <seq>ttcaactggccggagttgcttccaatttccgatgacggagcaaaacgctgacgaagccaacactgttcaaacttcgaatattgacaatgtagaactggcaatagttgatggctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttaaggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgatcggagtggaatcaaggtctctggaaagcgaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatggttcttatattgtgaggtgttgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17584" stop="19651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17884" g_stop="18146" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="312" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="439" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="510" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19417" g_stop="19426" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="520" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E310209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17884" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19417" e_stop="19426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTG</genome_strand>
        <mrna_strand>TTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG.........................................................................GTGTTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692570" ref_strand="+" ref_description="SGN-E692570 [LH_Ea09A24]">
      <seq>cgtgttgcttccaatttccgatgacggagcaaaacgccgacgaagccaacactgttcaaacttcgaatcttgacaatgtaaaaccggaaatagttgcttgctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttatggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgataggagtgaaatcaaggtctctggaaagagaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatgcttcttatattgtgaggatcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcatcggcagacagagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaagactactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaacaagcaaggtggcaaatcagctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcaaacagaagaacagtatcaaacttaattaacgttcttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17596" stop="20708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17895" g_stop="18146" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="301" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="428" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="499" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19430" i_length="87">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.464" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19431" g_stop="19489" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="558" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20108" g_stop="20408" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="859" r_length="301" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E692570" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17895" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19431" e_stop="19489"/>
          <exon e_start="20108" e_stop="20408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTT</genome_strand>
        <mrna_strand>CGTGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCCGACGAAGCCAACACTGTTCAAACTTCGAATCTTGACAATGTAAAACCGGAAATAGTTGCTTGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTATGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATAGGAGTGAAATCAAGGTCTCTGGAAAGAGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGCTTCTTATATTGTGAG.......................................................................................GATCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACTACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGGCAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCAAACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696410" ref_strand="+" ref_description="SGN-E696410 [LH_Ea09A24](-)">
      <seq>tgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttatggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgataggagtgaaatcaaggtctctggaaagagaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatgcttcttatattgtgaggatcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcatcggcagacagagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaagactactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaacaagcaaggtggcaaatcagctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcaaacagaagaacagtatcaaacttaattaacgttcttatttgtacttttctggtgtattatttggatggggtggagtttacttgtccacactgctccatcactccatattttgtttttcagagcaatatgataaaaaaaaatgtagtccgtagttactatatgaaaaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17772" stop="20841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18072" g_stop="18146" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="124" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="251" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="322" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19430" i_length="87">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.464" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19431" g_stop="19489" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="381" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20108" g_stop="20540" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="814" r_length="433" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="815" polyA_stop="829"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E696410" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18072" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19431" e_stop="19489"/>
          <exon e_start="20108" e_stop="20540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAAC</genome_strand>
        <mrna_strand>TGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTATGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATAGGAGTGAAATCAAGGTCTCTGGAAAGAGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGCTTCTTATATTGTGAG.......................................................................................GATCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACTACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGGCAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCAAACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACACTGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAAAATGTAGTCCGTAGTTACTATATGAAAAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544727" ref_strand="+" ref_description="SGN-E544727 [TUS-67-D9](-)">
      <seq>aggctcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcattggcagacagagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaagacaactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaacaagcaaggtgacaaatcagctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcatacagaagaacagtatcaaacttaattaacgttcttatttgtacttttctggtgtattatttggatggggtggagtttacttgtccacaatgctccatcactccatattttgtttttcagagcaatatgataaaaaaacatatagtccgtagttactatatgaaaatgtaacatgtctattatattgctaattttctagaacatgaaaaatgagaagaatttgtactttctatgacctcccattaagtttacaagaaaacaaaatggaggaaaagaattgttccattattaaagacaaaaaacacgaaaaatttactttctttgttgtcaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19129" stop="20999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19429" g_stop="19489" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20108" g_stop="20698" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="651" r_length="590" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="665"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E544727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19429" e_stop="19489"/>
          <exon e_start="20108" e_stop="20698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</genome_strand>
        <mrna_strand>AGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTT-TCTTTGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545223" ref_strand="+" ref_description="SGN-E545223 [TUS-67-P10](-)">
      <seq>agagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaagacaactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaacaagcaaggtgacaaatcagctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcatacagaagaacagtatcaaacttaattaacgttcttatttgtacttttctggtgtattatttggatggggtggagtttacttgtccacaatgctccatcactccatattttgtttttcagagcaatatgataaaaaaacatatagtccgtagttactatatgaaaatgtaacatgtctattatattgctaattttctagaacatgaaaaatgagaagaatttgtactttctatgacctcccattaagtttacaagaaaacaaaatggaggaaaagaattgttccattattaaagacaaaaaacacgaaaaatttacttgtctttgttgtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19814" stop="20999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20114" g_stop="20698" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="599"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E545223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20114" e_stop="20698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</genome_strand>
        <mrna_strand>AGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544878" ref_strand="+" ref_description="SGN-E544878 [TUS-67-H1](-)">
      <seq>ttgaagaatatagagagttgagaaaggatacattgcatttataaacaagcaaggtgacaaatcagctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcatacagaagaacagtatcaaacttaattaacgttcttatttgtacttttcgggtgtatcatttggatggggtggagtttacttgtccacaatgctccatcactccatattttgtttttcagagcaatatgataaaaaaacatatagtccgtagttactatatgaaaatgtaacatgtctattatattgctaattttctagaacatgaaaaatgagaagaatttgtactttctatgacctcccattaagtttacaagaaaacaaaatggaggaaaagaattgttccattattaaagacaaaaaacacgaaaaatttacttgtctttgtgtcaaaaaaaaagaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19887" stop="24774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20187" g_stop="20692" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="533"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E544878" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20187" e_stop="20692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTT</genome_strand>
        <mrna_strand>TTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCATTTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCGGGTGTATCATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309062" ref_strand="+" ref_description="SGN-E309062 [cLEZ-1-I21]">
      <seq>tgaaaccctaaaatttacagcctttctctctcacacctgatgctttctaaaaacctcaattttcttctcatcactcttccttgaatttcgtgcctgattttcatcttttttctctctgcatttttgtttaatctctttgattctgttgatcggtactgggtttttttttctgaatttttttttgatttttttgttttggttttgaatggccacgccgccgccggattcttctgctagtccaccggcggccaatacagatggtgtcgccgttgtgacatccggcgccggtgcagcggccgtcggggctactgtcagcagtcctcaagctcgccggagtttgcaagcaccatgggctcaagtggttcgtggaggagaggttgaagcagtatcagtgtcaagtcctcgctcgccgtcaccgatggcagcggctgcaggtgtttcgccggagaaaatttcgctgtcggatgattgctcgacccaaaagatttcgccggagatttctacttccggtgctctgccggagagtgctgatagcaatgagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30485" stop="31628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30785" g_stop="31328" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E309062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30785" e_stop="31328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGC</genome_strand>
        <mrna_strand>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAAAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735332" ref_strand="+" ref_description="SGN-E735332 [LC01AD07]">
      <seq>ctaaaatttacagcctttctctctccacctgatgctttctaaaaacctcaattttcttctcatcactcttccttgaatttcgtgcctgattttcatcttttttctctctgcatttttgtttaatctctttgattctgttgatcggttctggatttttttttctgaatttttttttgatttttttgttttggttttgaatggccacgccgccgccggattcttctgctagtccaccggcggccaatacagatggtgtcgccgttgtgacatccggcgccggtgcagcggccgtcggggctactgtcagcagtcctcaagctcgccggagtttgcaagcaccatgggctcaagtggttcgtggaggagaggttgaagcagtatcagtgtcaagtcctcgctcgccgtcaccgatggcagcggctgcaggtgtttcgccggagaaaatttcgctgtcggatgattgctcgacccagaagatttcgccggagatttctacttccggtgctctgccggagagttctgatagcaatgagggcaatgtaggtaggccgaagaagcctgcttggaataaacctgtaaacggtgtagttgaggcggtttctgttatgggtggggctgtttcctggcctgctctctctgagtctactcggcctagcccaaaatcagctactgattcagcaaaaccaattccagatggatcggtttctgtttctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30492" stop="31805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30792" g_stop="31505" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E735332" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30792" e_stop="31505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAA-C--TTCAAGATGGATCGGTTTCTGTTTCTCAG</genome_strand>
        <mrna_strand>CTAAAATTTACAGCCTTTCTCTCTC-CACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTTCTGGATTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTTCTGATAGCAATGAGGGCAATGTAGGTAGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAACCAATTCCAGATGGATCGGTTTCTGTTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288488" ref_strand="+" ref_description="SGN-E288488 [cLES-8-E18]">
      <seq>ttacagcctttctctctcacacctgatgctttctaaaaacctcaattttcttctcatcactcttccttgaatttcgtgcctgattttcatcttttttctctctgcatttttgtttaatctctttgattctgttgatcggtactgggtttttttttctgaatttttttttgatttttttgttttggttttgaatggccacgccgccgccggattcttctgctagtccaccggcggccaatacagatggtgtcgccgttgtgacatccggcgccggtgcagcggccgtcggggctactgtcagcagtcctcaagctcgccggagtttgcaagcaccatgggctcaagtggttcgtggaggagaggttgaagcactatcagtgtcaagtcctcgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30499" stop="31493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30799" g_stop="31193" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E288488" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30799" e_stop="31193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCG</genome_strand>
        <mrna_strand>TTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCACTATCAGTGTCAAGTCCTCGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735548" ref_strand="+" ref_description="SGN-E735548 [LC02AD07]">
      <seq>cctttctctctcacacctgatgctttctaaaaacctcaattttcttctcatcactcttccttgaatttcgtgcctgattttcatcttttttctctctgcatttttgtttaatctctttgattctgttgatcggttctggatttttttttctgaatttttttttgatttttttgttttggttttaaatggccaccccgccgccggattcttctgctagtccaccggaggccaatacaaatggtgtcgccgttgtgacatccggctccggtgcagcggccgtcggggctactgtcagcagtccttaagctcgccggagtttgcaagcaccaagggctcaagtggttcgtggaggacaggttgaagcagtatcattgtcaagtcctcgctccccgtcaccgatggaagcggctgcaggtgtttcgccggaaaaattttcactgtcggatgattgctcaacccagaatatttcgccggaaatttctacttccggtgctctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30505" stop="31603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30805" g_stop="31303" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E735548" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30805" e_stop="31303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCC</genome_strand>
        <mrna_strand>CCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTTCTGGATTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTAAATGGCCACCCCGCCGCCGGATTCTTCTGCTAGTCCACCGGAGGCCAATACAAATGGTGTCGCCGTTGTGACATCCGGCTCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTTAAGCTCGCCGGAGTTTGCAAGCACCAAGGGCTCAAGTGGTTCGTGGAGGACAGGTTGAAGCAGTATCATTGTCAAGTCCTCGCTCCCCGTCACCGATGGAAGCGGCTGCAGGTGTTTCGCCGGAAAAATTTTCACTGTCGGATGATTGCTCAACCCAGAATATTTCGCCGGAAATTTCTACTTCCGGTGCTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704251" ref_strand="+" ref_description="SGN-E704251 [FA23DB02]">
      <seq>atcactcttccttgaatttcgtgcctgattttcatcttttttctctctgcatttttgtttaatctctttgattctgttgatcggttctggatttttttttctgaatttttttttgatttttttgttttggttttgaatggccacgccgccgccggattcttctgctagtccaccggcggccaatacagatggggtccccgttgtgacatccggcgccggtgcagcggccgtcggggctactgtcagcagtcctcaagctcgccggagtttgcaagcaccatgggctcaagtggttcgtggaggagaggttgaagcagtatcagtgtcaagtcctcgctcgccgtcaccgatggcagcggctgcaggtgtttctccggagaaaatttcgctgtcggatgattgctcgacccagaagatttcgccggagatttctacttccggtgctctgccggagagttctgatagcaatgagggcaatgtaggtaggccgaagaagcctgcttggaataaacctgtaaacggtgtagttgaggcggtttctgttatgggtggggctgtttcctggcctgctctctctgagtctactcggcctagcccaaaatcatctacaaatatcagcagtgctacagaagtgaccgatgctcatctggaggtagctgctggtggctcatcggacgaatcagctaatcaatcaaacgcagctcaagaagaaggcagcgctggcgtggaaaatatctctaccaaccatgcatgaaataatactgtcgattttgcaacgagtggcaactctgttttgcattctgatttaaaggaaggtgtatttggaagggttatacatacatcatttgctgcccttgttggagggcatactttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30554" stop="36118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30854" g_stop="31458" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31459" i_stop="35547" i_length="4089">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35548" g_stop="35818" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="876" r_length="271" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E704251" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30854" e_stop="31458"/>
          <exon e_start="35548" e_stop="35818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAACTTCAAGATGGATCGGTTTCTGTTTCTCAGGTTTATTTATAATCTAATGTTGATTTTTATTGTCTAAAGTTTCAATTTTTATTTAGTTTTGCGTACTTTTGATGGCTAAAATGTTTACTGTATTTATATTTATTATGTTGATATGAAGGAATTAAAAGGGGTATAAATGATTAATTGGTGTGTATATATGTTTTTTGTGAATAGGGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGAGTAAGTGATATCCCTATTTCTGTAGTACGTATTGGTTGATTGCTGAATCGGCCTATATGATAATTTGATAACACATCATTGTCTTTCCTTTCCTATGTTGATATGCTTAGGACTATGTATGTCTTTTTTTTTTCTTCAAATTATTGGAACACTTTTTGTTTGCTTAAGACATGATCTGTGTGAGTGATTGACTTTATAATCATGATCTGGCTGTGATTATCCTTGTATTCTCTTTGATATTTAGCTCAGCTTGCTTAACTAAAATCATTGATTCTCAGCATAAAGATGTCACAAGTTCCTGAACTCATATGCTGAGATCATTTGAGCTAGTGAATTGCATATAGTAATTGTCAGGTGCTTGGAGATAAACATATGAAACTAGGTCATGACTCACAAAATGCTCTAGTTGAAATTGAGTTCTCTTTGAATTATTCAGAAACTAGCGTATGCAATAACTGTTGAACTTATCTAGAATGGGTACCAAATCTATACAAATAGACTAAATTCAGGATTGGAAGTGTACTTTTTCAGGTTTATTCTGGTTTCATTCCAGCTACCTATCCAAATTTGGATATTTTCTGATCCTTTGTTCTAGCTTAATGTCTTTTATATTAGAGCTGACTTAATCTTTCCTTGAACCATCTATGAAATTTACTTTTGTAGTACAAATTGAAAATACTAGACGCGTAATTTGTCTAACTCTTTTAAAAAACTTATAGTTCCTTTGATTGGTGACTGAACACACAAGTGTGTTTCTCTACTAAAGGAAGTGATACCTCTCCCAAAGCATCTATGCCAGTCTCACATTTGCTCTTCCACCTATATGTTTGTTGTAGCTTCTGGAGGTTGTTAAATGCAGACCAATTGTAGAAAGAATTTTGATTGAGCTGTAATGTTCTGCTGTGTTACATTGTTTCATGTTGGTTTACTTTTGATGTTTATCAGCATAGTTTCTGTTTGCTGATGGATGTTATTGCAGTTGACAGAAATAACTTTCATTGAAGAGAAAATCTGGAGATCAGAGTTCCATTTGGGCATTTCTTCTTTATTTTATTTAATTTGTTGGTGCACTTACAGGAAGTCAAGGATAGAAAATGGGAATTGGTTTCCATTTCCTTTTCTATTCAATTTAAAATCCGTATCCAAATTTATATTTTATGGCAGCTGTTTTCCGAATTCTATAATTTTCAGTAAGAGCATTTTGATTTGTTCTGCTTGAAATTGTTGCACAAAACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACATTTTTGGGGATGAAGGTTTTGCTTGTGGTCTGTTTTGCAGGTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAGGTAATATAGCAATTATAACTTCTCTTGCCTTGATGTATTATATTCTAATGCTTTTAAGTGGGTTAGGAAAAAAGATGCTTGATAATATTAGATAACACTGCCTCTGTATTTTGAACATGTTGTATCATTAGTTAAGAACTTTTATCTTGTACTGCATAGTCTCCCTGTTTATCCTTCTCTTCCACTATTATCACATGATATCAAGTACACATTGAGGTTCCTGTAGTTGTAATTTCTTTACTGAACTGCCCGTGTGAGTTCTTGTGAATCAAATATTTCTTCATCTTTTTGGAAGCTTTTTTCATGAACTGAGAGAATCCACATCTTATGGCATCTCACATAGTTATGGCCTTCTAGGGTAAGATAAGTGAGACTCGAGGAGCCTAAAGTCCTTTGCCTCTAATATAACGTATTTGTTTTGGGTTGTCTTGTAAGGGTGCTGCATTTCGCACAACATAAACTAACTACTTGAAATTGATTTTTGGTTCTGCACCAACTGTTCCACTCTTGCTGTATCAGCAGATGGGTGTTCTAATCTGTTACTTGAAGTAATCTTGATGGTAGTGATGTGATTTTTTGTAGGATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTG</genome_strand>
        <mrna_strand>ATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTTCTGGATTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGGGTCCCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCTCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTTCTGATAGCAATGAGGGCAATGTAGGTAGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCATCTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACGCAGCTCAAGAAGAAGGCAGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGGCATACTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309441" ref_strand="+" ref_description="SGN-E309441 [cTOA-2-G14]">
      <seq>attctggtgatcggtcctgggtggttttttctgaatttttttttgatttttttgtttgggttttgaatggccacgccgccgccggattcttctgctagtccaccggcggccaatacagatggtgtcgccgttgtgacatccggcgccggtgcagcggccgtcggggctactgtcagcagtcctcaagctcgccggagtttgcaagcaccatgggctcaagtggttcgcggaggagaggttgaagcagtatcagtgtcaagtcctcgctcgccgtcaccgatggcagcggctgcaggtgtttcgccggagaaaatttcgctgtcggatgattgctcgacccagaagatttcgccggagatttctacttccggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30624" stop="31598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30924" g_stop="31298" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E309441" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30924" e_stop="31298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCT</genome_strand>
        <mrna_strand>ATTCTGGTGATCGGTCCTGGGTGGTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTGGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGCGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246674" ref_strand="+" ref_description="SGN-E246674 [cLEF-45-E2]">
      <seq>ggaggagaggttgaagcagtatcagtgtcaagtcctcgctcgccgtcaccgatggcagcggctgcaggtgtttcgccggagaaaatttcgctgtcggatgattgctcgacccagaagatttcgccggagatttctacttccggtgctctgccggagagtgctgatagcaatgagggcaatgtaggtcggccgaagaagcctgcttggaataaacctgtaaacggtgtagttgaggcggtttctgttatgggtggggctgtttcctggcctgctctctctgagtctactcggcctagcccaaaatcagctactgattcagcaaaacttcaagatggatcggtttctgtttctcagggtccaataatttctcagtcacctcaaaaacaggctaatgttaatgcaaacacaaattcaaatgcaaatcctacaacccctgttagacaaagatcaataaaatacagaggtagtagcancagtggtggtggtggtggtagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30852" stop="32123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31152" g_stop="31505" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31506" i_stop="31679" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31680" g_stop="31823" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="498" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E246674" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31152" e_stop="31505"/>
          <exon e_start="31680" e_stop="31823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAACTTCAAGATGGATCGGTTTCTGTTTCTCAGGTTTATTTATAATCTAATGTTGATTTTTATTGTCTAAAGTTTCAATTTTTATTTAGTTTTGCGTACTTTTGATGGCTAAAATGTTTACTGTATTTATATTTATTATGTTGATATGAAGGAATTAAAAGGGGTATAAATGATTAATTGGTGTGTATATATGTTTTTTGTGAATAGGGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGT</genome_strand>
        <mrna_strand>GGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAACTTCAAGATGGATCGGTTTCTGTTTCTCAG..............................................................................................................................................................................GGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCANCAGTGGTGGTGGTGGTGGTAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476074" ref_strand="+" ref_description="SGN-E476074 [cSTB-43-A16]">
      <seq>cctagcccaaaatcagctactgattcagcaaaaccaattccagatggatcggcttctgtttctcagggtccaataatttctcagtcgcctcaaaaacaggctaatgttaatgcaaacacaaactcaaatgcaaatcctactacccctgttagacaaagatcaatgaaatacagaggtaacagcagtggtggtggtagtggtccacgtgctggagcatttattagaactccgccttcaccttcaccttcattgcctccaccatttcctgtaatgcacttcccacctgttcttgagcctcctgtaagaggtgtaagacctgttggaggatttccgtctcagccgcatggagtaaatgatcattcttcccatagaaatcatggcaggaaaggtaactttgggggccgacctcgtggagatgggtcttatcataacaatcatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31143" stop="32365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31443" g_stop="31505" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31506" i_stop="31679" i_length="174">
            <donor d_prob="0.996" d_score="0.83"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31680" g_stop="32065" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="443" r_length="377" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E476074" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31443" e_stop="31505"/>
          <exon e_start="31680" e_stop="32065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCCCAAAATCAGCTACTGATTCAGCAAAAC---TTCAAGATGGATCGGTTTCTGTTTCTCAGGTTTATTTATAATCTAATGTTGATTTTTATTGTCTAAAGTTTCAATTTTTATTTAGTTTTGCGTACTTTTGATGGCTAAAATGTTTACTGTATTTATATTTATTATGTTGATATGAAGGAATTAAAAGGGGTATAAATGATTAATTGGTGTGTATATATGTTTTTTGTGAATAGGGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGG</genome_strand>
        <mrna_strand>CCTAGCCCAAAATCAGCTACTGATTCAGCAAAACCAATTCCAGATGGATCGGCTTCTGTTTCTCAG..............................................................................................................................................................................GGTCCAATAATTTCTCAGTCGCCTCAAAAACAGGCTAATGTTAATGCAAACACAAACTCAAATGCAAATCCTACTACCCCTGTTAGACAAAGATCAATGAAATACAGAGGTA--A-CAGCA------GTGGTGGTGGTAGTGGTCCACGTGCTGGAGCATTTATTAGAACTCCGCCTTCACCTTCACCTTCATTGCCTCCACCATTTCCTGTAATGCACTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGTAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332427" ref_strand="+" ref_description="SGN-E332427 [cTOD-17-M16]">
      <seq>atcggtttctgtttctcagggtccaataatttctcagtcacctcaaaaacaggctaatgttaatgcaaacacaaattcaaatgcaaatcctacaacccctgttagacaaagatcaataaaatacagaggtagtagcagcagtggtggtggtggtggtagtggtccaggtgctggagcatttattagaactccgcctccacctccacctccattgcctcctccttttcctgtaatgcatttcccacctgttcttgagcctcctgtaagaggtgcaagacctgttggaggatttccgtctcagccgcatggagtaaatgatcattcttcccatagaaatcatggcaggaaaggtaactttgggggccgacctcgtggagatgggtcttatcataacaatcatgggggaaggcgtgatcaagatcggagagacgttcatatgggtcctccatttgctcctcctcctcatgcagcgtttatgcgagctccactccctggttctggtccatttcttccaacccctatgagaacaccttttgttaatcagatggcatatgatatgactcccttcttttacgttcctccactgagtccggagccctatagtgctgtgcctatcatcaaccaagcttcacaattaccccaacattttacctttagtggatccaaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31187" stop="32704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31487" g_stop="31505" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31506" i_stop="31679" i_length="174">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31680" g_stop="32214" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="554" r_length="535" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32288" g_stop="32404" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="672" r_length="118" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E332427" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31487" e_stop="31505"/>
          <exon e_start="31680" e_stop="32214"/>
          <exon e_start="32288" e_stop="32404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGTTTCTGTTTCTCAGGTTTATTTATAATCTAATGTTGATTTTTATTGTCTAAAGTTTCAATTTTTATTTAGTTTTGCGTACTTTTGATGGCTAAAATGTTTACTGTATTTATATTTATTATGTTGATATGAAGGAATTAAAAGGGGTATAAATGATTAATTGGTGTGTATATATGTTTTTTGTGAATAGGGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACA-TTTACCTTTAGTGGATCCAAATTTGC</genome_strand>
        <mrna_strand>ATCGGTTTCTGTTTCTCAG..............................................................................................................................................................................GGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATG.........................................................................ATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTTCACAATTACCCCAACATTTTACCTTTAGTGGATCCAAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466052" ref_strand="+" ref_description="SGN-E466052 [cPRO-23-E15]">
      <seq>ctcagtcacctcaaaaacaggctaatgttaatgcaaacacaaattcaaatgcaaatcctactacccctgttagacaaagatcaatgaaatacagaggtagcagcagtggtggtggtagtggtccaggtgctggagcatttattagaactccgcctccacctccacctccattgcctccaccatttcctgtaatgcacttcccacctgttcttgagcctcctgtaagaggtgtaagacctgttggaggatttccgtctcagccgcatggagtaaatgatcattcttcccatagaaatcatggcaggaaaggtaactttgggggccgacctcgtggagatgggtcttatcataacaatcatgggggaaggcgtgatcaagatcggagagacgttcatatgggtcctccatttgctcctcctcatgcagcgtttatgcgggctccactccctggttctggcccatttcttccaacccctatgagaccaccttttgttaatcagatgggatatgatatgactccattcttttatgttcctcctttgagtcccgagccctatagtgctgtgcctatcatcaaccaagctccacaattaccccaacatttacctttagtggatccaaatttgccttcctccttggttactcagatagagtattacttcagtgatgctaatcttgttaaagatgactttttgaggttacagatggatgaggaaggctgggttcctgtgcatctgattgctaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31393" stop="32989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31693" g_stop="32214" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="664" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32606" g_stop="32689" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="748" r_length="84" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E466052" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31693" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTT</genome_strand>
        <mrna_strand>CTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACTACCCCTGTTAGACAAAGATCAATGAAATACAGA-G--GTAGCAGCA------GTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCACCATTTCCTGTAATGCACTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGTAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTG---CTCCTCCTCATGCAGCGTTTATGCGGGCTCCACTCCCTGGTTCTGGCCCATTTCTTCCAACCCCTATGAGACCACCTTTTGTTAATCAGATGGGATATG.........................................................................ATATGACTCCATTCTTTTATGTTCCTCCTTTGAGTCCCGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTACTCAGATAGAGTATTACTTCAG....................................................................................................................................................................TGATGCTAATCTTGTTAAAGATGACTTTTTGAGGTTACAGATGGATGAGGAAGGCTGGGTTCCTGTGCATCTGATTGCTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466042" ref_strand="+" ref_description="SGN-E466042 [cPRO-23-C15]">
      <seq>ctcagtcacctcaaaaacaggctaatgttaatgcaaacacaaattcaaatgcaaatcctactacccctgttagacaaagatcaatgaaatacagaggtagcagcagtggtggtggtagtggtccaggtgctggagcatttattagaactccgcctccacctccacctccattgcctccaccatttcctgtaatgcacttcccacctgttcttgagcctcctgtaagaggtgtaagacctgttggaggatttccgtctcagccgcatggagtaaatgatcattcttcccatagaaatcatggcaggaaaggtaactttgggggccgacctcgtggagatgggtcttatcataacaatcatgggggaaggcgtgatcaagatcggagagacgttcatatgggtcctccatttgctcctcctcatgcagcgtttatgcgggctccactccctggttctggcccatttcttccaacccctatgagaccaccttttgttaatcagatgggatatgatatgactccattcttttatgttcctcctttgagtcccgagccctatagtgctgtgcctatcatcaaccaagctccacaattaccccaacatttacctttagtggatccaaatttgccttcctccttggttactcagatagagtattacttcagtgatgctaatcttgttaaagatgactttttgagggtacagatggatgangaaggctgggttcctgtgcatctgattgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31393" stop="32986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31693" g_stop="32214" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="664" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32606" g_stop="32686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="745" r_length="81" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E466042" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31693" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAA</genome_strand>
        <mrna_strand>CTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACTACCCCTGTTAGACAAAGATCAATGAAATACAGA-G--GTAGCAGCA------GTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCACCATTTCCTGTAATGCACTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGTAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTG---CTCCTCCTCATGCAGCGTTTATGCGGGCTCCACTCCCTGGTTCTGGCCCATTTCTTCCAACCCCTATGAGACCACCTTTTGTTAATCAGATGGGATATG.........................................................................ATATGACTCCATTCTTTTATGTTCCTCCTTTGAGTCCCGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTACTCAGATAGAGTATTACTTCAG....................................................................................................................................................................TGATGCTAATCTTGTTAAAGATGACTTTTTGAGGGTACAGATGGATGANGAAGGCTGGGTTCCTGTGCATCTGATTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598444" ref_strand="+" ref_description="SGN-E598444 [74116]">
      <seq>tagtggatcccgcgctgagtatcggcagaggggtgtgtagtgtcaggtgctgagcattattagaactcgctccactcgactccattggctccacatttcctgtaatgcacttcccacctgttcttgagcctcctgtagaggtgtaagacctgttggaggatttccgtctcagccgcatggagtaaatgatcattcttcccatagaaatcatggcaggaaaggtaactttgggggccgacctcgtggagatgggtcttatcataacaatcatgggggaaggcgtgatcaagatcggagagacgttcatatgggtcctccatttgttcctcctcatgcagcgtttatgcgggctccactccctggttctggcccatttcttccaacccctatgagaccaccttttgttaatcagatgggatatgatatgactccattcttttatgttcctcctttgagtcccgagccctatagtgctgtgcctatcatcaaccaagctccacaattaccccaacatttacctttagttggatccaaatttgccttcctccttggttactcagatagagtattacttcagtgatgctaatcttgtctaaagatgactttttgagggtacagatggatgaggaaggctgggttcctatgcatctgattgctaactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31497" stop="32991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31828" g_stop="32214" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="422" r_length="376" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="577" r_length="155" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32606" g_stop="32691" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="664" r_length="87" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E598444" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31828" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAG-TGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGT-AAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTC</genome_strand>
        <mrna_strand>GTGCT-GAGCA-TTATTAGAACT-CG-CTCCA-CTCGA-CTCCATTGGCTCCACAT-TTCCTGTAATGCACTTCCCACCTGTTCTTGAGCCTCCTGT-AGAGGTGTAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTG-T--TCCTCCTCATGCAGCGTTTATGCGGGCTCCACTCCCTGGTTCTGGCCCATTTCTTCCAACCCCTATGAGACCACCTTTTGTTAATCAGATGGGATATG.........................................................................ATATGACTCCATTCTTTTATGTTCCTCCTTTGAGTCCCGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTTGGATCCAAATTTGCCTTCCTCCTTGGTTACTCAGATAGAGTATTACTTCAG....................................................................................................................................................................TGATGCTAATCTTGTCTAAAGATGACTTTTTGAGGGTACAGATGGATGAGGAAGGCTGGGTTCCTATGCATCTGATTGCTAACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269045" ref_strand="+" ref_description="SGN-E269045 [cLEI-16-J21]">
      <seq>gaggatttccgtctcagccgcatggagtaaatgatcattcttcccataaaactcatggcatgaaaggtaactttgcgggccgacctcgtggagacgggtcttatcataacaatcatgggggaaggcgtgatcaagatcggagagacttgcatatgggtccttcatttgcttcttctcctcatgcaccgaatatgcgagctccactccctggttctgggccattacttccaacccctatgataacacctttcgttcatcagatggcatatgatatgactccgttcttttaccttcctccactgagtgcggagccctatagtgctgagcctatcatcaaccaagctccacaattaccccaacatttacctttagtggatccaaataagccatacttcttgggtaatcagatagagtattacttcagcgctgctaatcttgtcaaagatgactctttgagggtaaagatggatgaggaagggtgggttccaatgcatctgaatgctaactttcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31645" stop="32995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31945" g_stop="32214" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="424" r_length="154" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32606" g_stop="32695" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="514" r_length="90" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E269045" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31945" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCG</genome_strand>
        <mrna_strand>GAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAAAACTCATGGCATGAAAGGTAACTTTGCGGGCCGACCTCGTGGAGACGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACTTGCATATGGGTCCTTCATTTGCTTCTTCTCCTCATGCACCGAATATGCGAGCTCCACTCCCTGGTTCTGGGCCATTACTTCCAACCCCTATGATAACACCTTTCGTTCATCAGATGGCATATG.........................................................................ATATGACTCCGTTCTTTTACCTTCCTCCACTGAGTGCGGAGCCCTATAGTGCTGAGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATAAGCCATACTTCTTGGGTAATCAGATAGAGTATTACTTCAG....................................................................................................................................................................CGCTGCTAATCTTGTCAAAGATGACTCTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGAATGCTAACTTTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729869" ref_strand="+" ref_description="SGN-E729869 [LA22BD10]">
      <seq>atgagaacaccttttgttaatcagatggcatatgatatgactcccttcttttacgttcctccactgagtccggagccctatagtgctgtgcctatcatcaaccaagctccacaattaccccaacatttacctttagtggatccaaatttgccttcctccttggttaatcagatagagtattacttcagtgatgctaatcttgtaaaagatgactttttgagggtaaagatggatgaggaagggtgggttcctatgcatctgattgctaactttcctcgagttaagaaaatgacagagaaggtccagtctgatattatccagttcattttgtattgtttgagggcttcaacgtttgtagaagtgcaggatgataaggtaaggagacgggatggttggaggaaatggactcgtactgctggccagcttgcagctgattcaggtttgtccacacctgttgcatcgacagatagtgctccaacagcttccgtgcagaatgtctctgagaatgaatcagctacaaatatcagcagtgctacagaagtgaccgatgctcatctggaggtagctgctggtggctcatcggacgaatcagctaatcaatcaaacgcagctcaagaagaaggcagcgctggcgtggaaaatatctctaccaaccatgcatgaaataatactgtcgattttgcaacgagtggcaactctgttttgcattctgatttaaaggaaggtgtatttggaagggttatacatacatcatttgctgcccttgttggaggccatactttttgcagtttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31881" stop="36129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32181" g_stop="32214" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="188" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32606" g_stop="32696" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="279" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32697" i_stop="34730" i_length="2034">
            <donor d_prob="0.817" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34731" g_stop="34817" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34818" i_stop="35399" i_length="582">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35400" g_stop="35829" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="796" r_length="430" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E729869" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32181" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32696"/>
          <exon e_start="34731" e_stop="34817"/>
          <exon e_start="35400" e_stop="35829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGAGTAAGTGATATCCCTATTTCTGTAGTACGTATTGGTTGATTGCTGAATCGGCCTATATGATAATTTGATAACACATCATTGTCTTTCCTTTCCTATGTTGATATGCTTAGGACTATGTATGTCTTTTTTTTTTCTTCAAATTATTGGAACACTTTTTGTTTGCTTAAGACATGATCTGTGTGAGTGATTGACTTTATAATCATGATCTGGCTGTGATTATCCTTGTATTCTCTTTGATATTTAGCTCAGCTTGCTTAACTAAAATCATTGATTCTCAGCATAAAGATGTCACAAGTTCCTGAACTCATATGCTGAGATCATTTGAGCTAGTGAATTGCATATAGTAATTGTCAGGTGCTTGGAGATAAACATATGAAACTAGGTCATGACTCACAAAATGCTCTAGTTGAAATTGAGTTCTCTTTGAATTATTCAGAAACTAGCGTATGCAATAACTGTTGAACTTATCTAGAATGGGTACCAAATCTATACAAATAGACTAAATTCAGGATTGGAAGTGTACTTTTTCAGGTTTATTCTGGTTTCATTCCAGCTACCTATCCAAATTTGGATATTTTCTGATCCTTTGTTCTAGCTTAATGTCTTTTATATTAGAGCTGACTTAATCTTTCCTTGAACCATCTATGAAATTTACTTTTGTAGTACAAATTGAAAATACTAGACGCGTAATTTGTCTAACTCTTTTAAAAAACTTATAGTTCCTTTGATTGGTGACTGAACACACAAGTGTGTTTCTCTACTAAAGGAAGTGATACCTCTCCCAAAGCATCTATGCCAGTCTCACATTTGCTCTTCCACCTATATGTTTGTTGTAGCTTCTGGAGGTTGTTAAATGCAGACCAATTGTAGAAAGAATTTTGATTGAGCTGTAATGTTCTGCTGTGTTACATTGTTTCATGTTGGTTTACTTTTGATGTTTATCAGCATAGTTTCTGTTTGCTGATGGATGTTATTGCAGTTGACAGAAATAACTTTCATTGAAGAGAAAATCTGGAGATCAGAGTTCCATTTGGGCATTTCTTCTTTATTTTATTTAATTTGTTGGTGCACTTACAGGAAGTCAAGGATAGAAAATGGGAATTGGTTTCCATTTCCTTTTCTATTCAATTTAAAATCCGTATCCAAATTTATATTTTATGGCAGCTGTTTTCCGAATTCTATAATTTTCAGTAAGAGCATTTTGATTTGTTCTGCTTGAAATTGTTGCACAAAACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACATTTTTGGGGATGAAGGTTTTGCTTGTGGTCTGTTTTGCAGGTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAGGTAATATAGCAATTATAACTTCTCTTGCCTTGATGTATTATATTCTAATGCTTTTAAGTGGGTTAGGAAAAAAGATGCTTGATAATATTAGATAACACTGCCTCTGTATTTTGAACATGTTGTATCATTAGTTAAGAACTTTTATCTTGTACTGCATAGTCTCCCTGTTTATCCTTCTCTTCCACTATTATCACATGATATCAAGTACACATTGAGGTTCCTGTAGTTGTAATTTCTTTACTGAACTGCCCGTGTGAGTTCTTGTGAATCAAATATTTCTTCATCTTTTTGGAAGCTTTTTTCATGAACTGAGAGAATCCACATCTTATGGCATCTCACATAGTTATGGCCTTCTAGGGTAAGATAAGTGAGACTCGAGGAGCCTAAAGTCCTTTGCCTCTAATATAACGTATTTGTTTTGGGTTGTCTTGTAAGGGTGCTGCATTTCGCACAACATAAACTAACTACTTGAAATTGATTTTTGGTTCTGCACCAACTGTTCCACTCTTGCTGTATCAGCAGATGGGTGTTCTAATCTGTTACTTGAAGTAATCTTGATGGTAGTGATGTGATTTTTTGTAGGATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAG</genome_strand>
        <mrna_strand>ATGAGAACACCTTTTGTTAATCAGATGGCATATG.........................................................................ATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAG....................................................................................................................................................................TGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCTATGCATCTGATTGCTAACTTTCCTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGACAGATAGTGCTCCAACAGCTTCCGTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCATCTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACGCAGCTCAAGAAGAAGGCAGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728791" ref_strand="+" ref_description="SGN-E728791 [LA18DH04]">
      <seq>gatggcatatgatatgactcccttcttttacgttcctccactgagtccggagccctatagtgctgtgcctatcatcaacgagagctccacaattaccccaacatttacctttagtggatccaaatttgccttcctccttggttaatcagatagagtattacttcagtgatgctaatcttgtaaaagatgactttttgagggtaaagatggatgaggaagggtgggttcctatgcatctgattgctaactttcctcgagttaagaaaatgacagagaaggtccagtctgatattatccagttcattttgtattgtttgagggcttcaacgtttgtagaagtgcaggatgataaggtaaggagacgggatggttggaggaaatggactcgtactgctggccagcttgcagctgattcaggtttgtccacacctgttgcatcgacagatagtgctccaacagcttccgtgcagaatgtctctgagaatgaatcagctacaaatatcagcagtgctacagaagtgaccgatgctcatctggaggtagctgctggtggctcatcggacgaatcagctaatcaatcaaacgcagctcaagaagaaggcagcgctggcgtggaaaatatctctaccaaccatgcatganataatactgtcgattttgcaacgagtggcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31987" stop="36030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32204" g_stop="32214" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="166" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32606" g_stop="32696" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="257" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32697" i_stop="34730" i_length="2034">
            <donor d_prob="0.817" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34731" g_stop="34817" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34818" i_stop="35399" i_length="582">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35400" g_stop="35730" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="675" r_length="331" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E728791" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32204" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32696"/>
          <exon e_start="34731" e_stop="34817"/>
          <exon e_start="35400" e_stop="35730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCA-AGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGAGTAAGTGATATCCCTATTTCTGTAGTACGTATTGGTTGATTGCTGAATCGGCCTATATGATAATTTGATAACACATCATTGTCTTTCCTTTCCTATGTTGATATGCTTAGGACTATGTATGTCTTTTTTTTTTCTTCAAATTATTGGAACACTTTTTGTTTGCTTAAGACATGATCTGTGTGAGTGATTGACTTTATAATCATGATCTGGCTGTGATTATCCTTGTATTCTCTTTGATATTTAGCTCAGCTTGCTTAACTAAAATCATTGATTCTCAGCATAAAGATGTCACAAGTTCCTGAACTCATATGCTGAGATCATTTGAGCTAGTGAATTGCATATAGTAATTGTCAGGTGCTTGGAGATAAACATATGAAACTAGGTCATGACTCACAAAATGCTCTAGTTGAAATTGAGTTCTCTTTGAATTATTCAGAAACTAGCGTATGCAATAACTGTTGAACTTATCTAGAATGGGTACCAAATCTATACAAATAGACTAAATTCAGGATTGGAAGTGTACTTTTTCAGGTTTATTCTGGTTTCATTCCAGCTACCTATCCAAATTTGGATATTTTCTGATCCTTTGTTCTAGCTTAATGTCTTTTATATTAGAGCTGACTTAATCTTTCCTTGAACCATCTATGAAATTTACTTTTGTAGTACAAATTGAAAATACTAGACGCGTAATTTGTCTAACTCTTTTAAAAAACTTATAGTTCCTTTGATTGGTGACTGAACACACAAGTGTGTTTCTCTACTAAAGGAAGTGATACCTCTCCCAAAGCATCTATGCCAGTCTCACATTTGCTCTTCCACCTATATGTTTGTTGTAGCTTCTGGAGGTTGTTAAATGCAGACCAATTGTAGAAAGAATTTTGATTGAGCTGTAATGTTCTGCTGTGTTACATTGTTTCATGTTGGTTTACTTTTGATGTTTATCAGCATAGTTTCTGTTTGCTGATGGATGTTATTGCAGTTGACAGAAATAACTTTCATTGAAGAGAAAATCTGGAGATCAGAGTTCCATTTGGGCATTTCTTCTTTATTTTATTTAATTTGTTGGTGCACTTACAGGAAGTCAAGGATAGAAAATGGGAATTGGTTTCCATTTCCTTTTCTATTCAATTTAAAATCCGTATCCAAATTTATATTTTATGGCAGCTGTTTTCCGAATTCTATAATTTTCAGTAAGAGCATTTTGATTTGTTCTGCTTGAAATTGTTGCACAAAACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACATTTTTGGGGATGAAGGTTTTGCTTGTGGTCTGTTTTGCAGGTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAGGTAATATAGCAATTATAACTTCTCTTGCCTTGATGTATTATATTCTAATGCTTTTAAGTGGGTTAGGAAAAAAGATGCTTGATAATATTAGATAACACTGCCTCTGTATTTTGAACATGTTGTATCATTAGTTAAGAACTTTTATCTTGTACTGCATAGTCTCCCTGTTTATCCTTCTCTTCCACTATTATCACATGATATCAAGTACACATTGAGGTTCCTGTAGTTGTAATTTCTTTACTGAACTGCCCGTGTGAGTTCTTGTGAATCAAATATTTCTTCATCTTTTTGGAAGCTTTTTTCATGAACTGAGAGAATCCACATCTTATGGCATCTCACATAGTTATGGCCTTCTAGGGTAAGATAAGTGAGACTCGAGGAGCCTAAAGTCCTTTGCCTCTAATATAACGTATTTGTTTTGGGTTGTCTTGTAAGGGTGCTGCATTTCGCACAACATAAACTAACTACTTGAAATTGATTTTTGGTTCTGCACCAACTGTTCCACTCTTGCTGTATCAGCAGATGGGTGTTCTAATCTGTTACTTGAAGTAATCTTGATGGTAGTGATGTGATTTTTTGTAGGATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACT</genome_strand>
        <mrna_strand>GATGGCATATG.........................................................................ATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACGAGAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAG....................................................................................................................................................................TGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCTATGCATCTGATTGCTAACTTTCCTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGACAGATAGTGCTCCAACAGCTTCCGTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCATCTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACGCAGCTCAAGAAGAAGGCAGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGANATAATACTGTCGATTTTGCAACGAGTGGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687626" ref_strand="+" ref_description="SGN-E687626 [T3_tus_79_C08]">
      <seq>cgtttttttttatccaatggatacagacaaatgattgcatgtttaagtctagaatttggttcaatgtccaagtagattttagcactctttatgggatctttaaatagtggaattattacaaataaggctttggatctcgtcaatgcttttaggacttctgttattcctattgtccagattatttaaccgttttctcttggtggaattctatatgttcgagtattgattatggcaatactataagatgtctgacttttttttactttgagatttgcaattttgtcttttatagagggctttattataactaatctactgtaatctgcaatcatattatgtgttatgttacttgactattcatttgactgaaacatacatatctgcaaaatacacccaaaaaagccgtactaaatatcagtggcccccccataaatctatactattggattttaaaaatcagtagaatgttatatatgggatttaaacctgtgatctaaagcaatttcttaacctcctttgactcttcactaaactttttcttatagcaagggcatccaacaacttatgtgtaactaaaaaaattgcttttaccctatcaaacagtatacttttcaatgaaggggattcaattttcatcaacttagacttgccactgctaaatatgcccaatattgaaaccatatgtgtatgcaatttccatacttgtttcctcgtaatatctattgtttgttcttgacatgcttttacaatatagtagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="33633" stop="34990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33930" g_stop="34690" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E687626" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33930" e_stop="34690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACA</genome_strand>
        <mrna_strand>CGTTTTTTTTTATCCAATGGATACAGACAAATGATTGCATGTTTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322707" ref_strand="+" ref_description="SGN-E322707 [cTOB-26-P13]">
      <seq>ttttttttatccaatggatacagacaaatgattgcatgcctaagtctagaatttggttcaatgtccaagtagattttagcactctttatgggatctttaaatagtggaattattacaaataaggctttggatctcgtcaatgcttttaggacttctgttattcctattgtccagattatttaaccgttttctcttggtggaattctatatgttcgagtattgattatggcaatactataagatgtctgacttttttttactttgagatttgcaattttgtcttttatagagggctttattataactaatctactgtaatctgcaatcatattatgtgttatgttacttgactattcatttgactgaaacatacatatctgcaaaatacacccaaaaaagccgtactaaatatcagtggcccccccataaatctatactattggattttaaaaatcagtagaatgttatatatgggatttaaacctgtgatctaaagcaatttcttaacctcctttgactcttcactaaactttttcttatagcaagggcatccaacaacttatgtgtaactaaaaaaattgcttttaccctatcaaacagtatactttttcatgaaggggattncatttttcatcacttagacttgccactgctaaatatgcccaatattgaaaccatatgtgtatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="33633" stop="34922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33933" g_stop="34622" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E322707" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33933" e_stop="34622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATT-CAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAA</genome_strand>
        <mrna_strand>TTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTTCATGAAGGGGATTNCATTTTTCATC-ACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327313" ref_strand="+" ref_description="SGN-E327313 [cTOC-19-B20]">
      <seq>tctttatgggatctttaaatagtggaattattacaaataaggctttggatctcgtcaatgcttttaggacttctgttattcctattgtccagattatttaaccgttttctcttggtggaattctatatgttcgagtattgattatggcaatactataagatgtctgacttttttttactttgagatttgcaattttgtcttttatagagggctttattataactaatctactgtaatctgcaatcatattatgtgttatgttacttgactattcatttgactgaaacatacatatctgcaaaatacacccaaaaaagccgtactaaatatcagtggcccccccataaatctatactattggattttaaaaatcagtagaatgttatatatgggatttaaacctgtgatctaaagcaatttcttaacctcctttgactcttcactaaactttttcttatagcaagggcatccaacaacttatgtgtaactaaaaaaattgcttttaccctatcaaacagtatacttttcaatgaaggggattcaattttcatcaacttagacttgccactgctaaatatgcccaatattgaaaccatatgtgtatgcaatttccatacttgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="33715" stop="34938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34015" g_stop="34638" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E327313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34015" e_stop="34638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTC</genome_strand>
        <mrna_strand>TCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391885" ref_strand="+" ref_description="SGN-E391885 [TUS-24-K23](-)">
      <seq>acacctgttgcatcgtcagatggtggtccaacagcttccttgcagaatgtctttgagaatgaatcagctacaaatatcagcagtgctacagaagtgaccgatgctcaactggaggtagctgctggtggctcatcggacgaatcagctaatcaatcaaacccagctcaagaagaaggcggcgctggcgtggaaaatatctctaccaaccatgcatgaaataatactgtcgattttgcaacgagtggcaactttgttttgcattttgatttaaaggaaggtgtatttggaagggttatacatacatcatttgctgcccttgttggaggccatactttttgcagtttttgaggtgagtggaagagttaaactaatgtgtaagttatttggtatagagagtggaacgatagtggagattaaaaggatatacagttgagcttgagactttcgagtcgtttggcttgtatacttgcatcacatatgcaggctggtattccattgtgattcaatggagtgaatttggattttgagcctaaggtttaacttttttgggttgaaactttacctccatttcagaggaaacattttgaaaatgtagatttagtgcttggctggtatccagagtgattgtgctttgctgattttgttatacttatctaggcatattgattgttttaaattattttttctttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="35181" stop="36475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35481" g_stop="36183" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E391885" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35481" e_stop="36183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAGGTGAGTGGAAGAGTTAAACTAATGTGTAAGTTATCTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGCTTGAGACTTTCGAGTCGTTTGGCTCGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTCTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTCTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTTGCATCTCATTA</genome_strand>
        <mrna_strand>ACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTTTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTTTGTTTTGCATTTTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAGGTGAGTGGAAGAGTTAAACTAATGTGTAAGTTATTTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGCTTGAGACTTTCGAGTCGTTTGGCTTGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTTTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTTTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405990" ref_strand="+" ref_description="SGN-E405990 [PPI-2-E24]">
      <seq>gttaaactaatgtgtaagttatctggtatagagagtggaacgatagtggagattaaaaggatatacagttgaggcttgagactttttgagttgtttggctcgtatacttgcatcgcatatgcaggctggtattccattgtgattcaatggagtgaatttggattttgagcctaaggtttaacttttttgggttgaaattttacctccttttcagaggaaacattctgaaaatgtagatttagtgcttggctggtaaccagagtgattgtgctctgctgattttgttatacttatctaggcatattgattgttttaaattattgtctttttttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="35542" stop="36475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35842" g_stop="36185" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E405990" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35842" e_stop="36185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAACTAATGTGTAAGTTATCTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGA-GCTTGAGAC-TTTCGAGTCGTTTGGCTCGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTCTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTCTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTTGCATCTCATTATA</genome_strand>
        <mrna_strand>GTTAAACTAATGTGTAAGTTATCTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGGCTTGAGACTTTTTGAGTTGTTTGGCTCGTATACTTGCATCGCATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAATTTTACCTCCTTTTCAGAGGAAACATTCTGAAAATGTAGATTTAGTGCTTGGCTGGTAACCAGAGTGATTGTGCTCTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTGTCT-TTTTTTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290473" ref_strand="+" ref_description="SGN-E290473 [cLES-20-N6]">
      <seq>catacgacataggagctggagaagcaagcccttcattggcacttaatccaggattggtctacgagactaacaccgcagactacttgcagtacctatgctcagttggctacgataaatcaaagataaaactcatttcaaatacagttcctgatgatttttcatgtcccaccaactcaagttctgaatccgtctcacaaatgaactacccttccattgctgtttcaaatatcaaagaaaatgaaatcaagaaagtaacaagaactgtaactaacgtaggacaagacgacgcaacatacacagcaagtataaaggcaccagttggtttggaagtccaagtgaccccgaataaattggtatttacaaataatagcaagaagttgagctatgaaatgtctttcaaagcttcatctaaaccaaaggaagacttgtttggatcaattacatggacaaatggtaaatacaaagtccgaagtccattcgttatatctactaattcacaaggtgaacactccaaaacagcagatcgcagatcaaactagtctagcaagtttgtatatactgtaatagtccatgtccatgtacacaactatgttacaactacatcatatacatgcttacatgaaaaaaagagcgaaataaagatcagatgacggactcgttcacagagtgagaatataatactaccttcgattcaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="42730" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43030" g_stop="43727" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="709"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E290473" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43030" e_stop="43727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</genome_strand>
        <mrna_strand>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACGGACTCGTTCACAGAGTGAGAATATAATACTACCTTCGATTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372677" ref_strand="+" ref_description="SGN-E372677 [TUS-31-I15]">
      <seq>catacgacataggagctggagaagcaagcccttcattggcacttaatccaggattggtctacgagactaacaccgcagactacttgcagtacctatgctcagttggctacgataaatcaaagataaaactcatttcaaatacagttcctgatgatttttcatgtcccaccaactcaagttctgaatccgtctcacaaatgaactacccttccattgctgtttcaaatatcaaagaaaatgaaatcaagaaagtaacaagaactgtaactaacgtaggacaagacgacgcaacatacacagcaagtataaaggcaccagttggtttggaagtccaagtgaccccgaataaattggtatttacaaataatagcaagaagttgagctatgaaatgtctttcaaagcttcatctaaaccaaaggaagacttgtttggatcaattacatggacaaatggtaaatacaaagtccgaagtccattcgttatatctactaattcacaaggtgaacactccaaaacagcagatcgcagatcaaactagtctagcaagtttgtatatactgtaatagtccatgtccatgtacacaactatgttacaactacatcatatacatgcttacatgaaaaaaagagcgaaataaagatcagatgacagactcgttcacagagtgagaatataatactacctccgattcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="42730" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43030" g_stop="43727" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="708"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E372677" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43030" e_stop="43727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</genome_strand>
        <mrna_strand>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372676" ref_strand="+" ref_description="SGN-E372676 [TUS-31-I15](-)">
      <seq>gagctggagaagcaagcccttcattggcacttaatccaggattggtctacgagactaacaccgcagactacttgcagtacctatgctcagttggctacgataaatcaaagataaaactcatttcaaatacagttcctgatgatttttcatgtcccaccaactcaagttctgaatccgtctcacaaatgaactacccttccattgctgtttcaaatatcaaagaaaatgaaatcaagaaagtaacaagaactgtaactaacgtaggacaagacgacgcaacatacacagcaagtataaaggcaccagttggtttggaagtccaagtgaccccgaataaattggtatttacaaataatagcaagaagttgagctatgaaatgtctttcaaagcttcatctaaaccaaaggaagacttgtttggatcaattacatggacaaatggtaaatacaaagtccgaagtccattcgttatatctactaattcacaaggtgaacactccaaaacagcagatcgcagatcaaactagtctagcaagtttgtatatactgtaatagtccatgtccatgtacacaactatgttacaactacatcatatacatgcttacatgaaaaaaagagcgaaataaagatcagatgacagactcgttcacagagtgagaatataatactacctccgattcaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="42742" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43042" g_stop="43727" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="696"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E372676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43042" e_stop="43727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</genome_strand>
        <mrna_strand>GAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233939" ref_strand="+" ref_description="SGN-E233939 [cLEL-8-F20](-)">
      <seq>caagttacctaattcaagattggtatatgtagatacatacaatgtgctacttgatgtcatcgacaaccctcaacgatatggattcaagattacagacaagggatgctgcggcacggggaaaatagaagttgcagagttatgcacatatacatgttccagtgatactgattatattttttgggatagttttcatcttacagaaaaagcatatagacttttagttcatcaaattcttgtccaacatttaaatagcttcttctgatatatattccacatgcataagtccaacaatatgtattttttttaaagtgtactcaaagagaaacagaacattagtcattctatgtactatcctcattgtttggtttgcaaataattatacaagaattgtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="47156" stop="46083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46856" g_stop="46777" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46776" i_stop="46700" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46699" g_stop="46384" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="396" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="411"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E233939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46856" e_stop="46777"/>
          <exon e_start="46699" e_stop="46384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTACCTAATTCAAGATTGGTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATGGTACAATAATGTCTGTTTTTTGTTTTCTTGAATCGTTAAATGTACAAGATTTCTCATATTTTTGTATGATTGTGTAGGATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</genome_strand>
        <mrna_strand>CAAGTTACCTAATTCAAGATTGGTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATG.............................................................................GATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234359" ref_strand="+" ref_description="SGN-E234359 [cLEL-8-F20](-)">
      <seq>gtatatgtagatacatacaatgtgctacttgatgtcatcgacaacccccaacgatatggattcaagattacagacaagggatgctgcggcacggggaaaatagaagttgcagagttatgcacatatacatgttccagtgatactgattatattttttgggatagttttcatcttacagaaaaagcatatagacttttagttcatcaaattcttgtccaacatttaaatagcttcttctgatatatattccacatgcataagtccaacaatatgtattttttttaaagtgtactcaaagagaaacagaacattagtcattctatgtactatcctcattgtttggtttgcaaataattatacaagaattgtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="47134" stop="46083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46834" g_stop="46777" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46776" i_stop="46700" i_length="77">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46699" g_stop="46384" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="374" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="389"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E234359" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46834" e_stop="46777"/>
          <exon e_start="46699" e_stop="46384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATGGTACAATAATGTCTGTTTTTTGTTTTCTTGAATCGTTAAATGTACAAGATTTCTCATATTTTTGTATGATTGTGTAGGATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</genome_strand>
        <mrna_strand>GTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCCCAACGATATG.............................................................................GATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314319" ref_strand="+" ref_description="SGN-E314319 [cTOA-21-O22]">
      <seq>cagcatgattgagtttttgaagttaaatagcattagttcttgtgtgttcttttccaccaaagctaaaaagtttacacttttatcaatgaagttctacttttacaagatttgttctttttttgtgttttgtataagtgtttgttatgcaataagtctacctcctaataagtctattccagcagtgtttgtttttggagactctattgttgatactggtaataataatggccttaaaactatagctaaggttaattatcctccttatggtaaagattttatgggaggaataccaactggaaggttttctaatggcaaagtcccttcagatttccttgtggaagaattgggaataaaagatcttttaccagcatatcttgatccaactttacaatccgaagaccttatcacaggagttaattttgcttcaggaggtgcaggatatgatcctctaacatccgaactcgctaaagtcatctcattagatggccaagtgatactattcaaagagtacatagtaaagctcacagagttagttggagaagatagaaagaatgaaatcttggcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="48796" stop="46948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48162" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48161" i_stop="47569" i_length="593">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47568" g_stop="47438" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="466" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47437" i_stop="47350" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47349" g_stop="47248" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="568" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E314319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48162"/>
          <exon e_start="47568" e_stop="47438"/>
          <exon e_start="47349" e_stop="47248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATGATTGAGTTTTTGAAGTTAAATAGCATTAGTTCTTGTGTGTTCTTTTCCACCAAAGCTAAAAAGTTTACACTTTTATCAATGAAGTTCTACTTTTACAAGATTTGTTCTTTTTTTGTGTTTTGTATAAGTGTTTGTTATGCAATAAGTCTACCTCCTAATAAGTCTATTCCAGCAGTGTTTGTTTTTGGAGACTCTATTGTTGATACTGGTAATAATAATGGCCTTAAAACTATAGCTAAGGTTAATTATCCTCCTTATGGTAAAGATTTTATGGGAGGAATACCAACTGGAAGGTTTTCTAATGGCAAAGTCCCTTCAGATTTCCTTGGTAAGAAAATTTTATATATTGTACAACTATGTTGCTCGGACTCATAAAAAATGTCGAGGGATGTGTGTTTGATCCTTCAAAAGTAGTACATTTTTTGAGGATGCGACACTGGTGTGGCAACATTTGTAGAGCAGCATAGTTGTAATGTCCTAAATTTCTATAGTTTGAACAGAAAGGACTATAAGTAAGTATTTTTTGGAGGATCCGATACAAGTGCAATTACATATCTATAGAGTCTTGAGCAACATAGTTGTAAAGTCCTATCTATCTATAGTTTGAATAGAGAGGACTATATTGTACATCTATGTTGCTCGAACTTTTAAAACATGTCGACTGGTGCATACTGGATCCTCCAAAAGTAATGCATTTTTGGGAGGATCCGACACAAGTTTGTAGAGTCAGCTATGTTTCTCAAGACTCTAAAACAATGTCGACAGGTACATGTTGGATTGTCCAAAAATAGTGTGTTTTTGGAGGATCCGACACGAGTGGAACAACATTTTAGGAGAGTCTGAGCAACATAGTTGCAAAGTTGTATCTATCTATAGTTTGAATGAGGAAGAGTTTTCTTAGTCTCTCTGTCTTTTTTTCAGTGGAAGAATTGGGAATAAAAGATCTTTTACCAGCATATCTTGATCCAACTTTACAATCCGAAGACCTTATCACAGGAGTTAATTTTGCTTCAGGAGGTGCAGGATATGATCCTCTAACATCCGAACTCGCTGTACATAATCTTTGTTTTAGTCATTGATCAGTGTGTTCTTTTACAAGCATTTTTCTTGTAGTTTCTGAAACTTAATGTGTATATGCAGAAAGTCATCTCATTAGATGGCCAAGTGATACTATTCAAAGAGTACATAGTAAAGCTCACAGAGTTAGTTGGAGAAGATAGAAAGAATGAAATCTTGGCAAAT</genome_strand>
        <mrna_strand>CAGCATGATTGAGTTTTTGAAGTTAAATAGCATTAGTTCTTGTGTGTTCTTTTCCACCAAAGCTAAAAAGTTTACACTTTTATCAATGAAGTTCTACTTTTACAAGATTTGTTCTTTTTTTGTGTTTTGTATAAGTGTTTGTTATGCAATAAGTCTACCTCCTAATAAGTCTATTCCAGCAGTGTTTGTTTTTGGAGACTCTATTGTTGATACTGGTAATAATAATGGCCTTAAAACTATAGCTAAGGTTAATTATCCTCCTTATGGTAAAGATTTTATGGGAGGAATACCAACTGGAAGGTTTTCTAATGGCAAAGTCCCTTCAGATTTCCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAATTGGGAATAAAAGATCTTTTACCAGCATATCTTGATCCAACTTTACAATCCGAAGACCTTATCACAGGAGTTAATTTTGCTTCAGGAGGTGCAGGATATGATCCTCTAACATCCGAACTCGCT........................................................................................AAAGTCATCTCATTAGATGGCCAAGTGATACTATTCAAAGAGTACATAGTAAAGCTCACAGAGTTAGTTGGAGAAGATAGAAAGAATGAAATCTTGGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617933" ref_strand="+" ref_description="SGN-E617933 [68605]">
      <seq>atctagattcaaatttaaaagttgaagatttannaaaactggagtaagttttgcttcaggagcttctggatttgaccttttaactcctattgtcgcgtcagctttacccctatcagtacaattagcactttttcaacaatatatttggaagatgaatggatttattggtgaagaagcaacaaagaatattgttaaaaagagtctttatatagtagttgctggaagtgatgacctatgtaatacatatttcatgctcaaatttccaaggaagatacaatacaatattgactcatatacaaatcttatggtagatggagcttccaattttatcaatgctttgaagatgcattgagtgcgtgctgccaaggagggaatatgtacttattatgtgacaatatcacaagaatatgtgaaaatgacgcaaattatttattttgggacagttatcatctcactgagagaggttatagggttctccttgatcaaatctccaattaataatcttattgtaaacatgaattatatatcaagatttgattatccagttaataaacattcgattaatttaaggctgaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52485" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52185" g_stop="52091" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51929" g_stop="51693" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="334" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51692" i_stop="50906" i_length="787">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50905" g_stop="50659" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="578" r_length="244" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="606"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E617933" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52185" e_stop="52091"/>
          <exon e_start="51929" e_stop="51693"/>
          <exon e_start="50905" e_stop="50659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGATTCAAATTTAAAAGTTGAAGATTTA--AAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCGGTAACTTCTTATTCTATCTAGTTATTTACATAACAGGAATTAACGACAGATAAATTTAGTAGCTAAACAAGTTCTCAACTAATTCCACTTCCTTTTTTTAGTGAATAATGATTACCTATATATTTTCTTATATATATTATTTTTTTATTTATGTAAATTAGTCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATATTGTTAAAAAGAGTCTTTATATAGTAGTTGCTGGAAGTGATGACCTATGTAATACATATTTCATGCTCAAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAATGTAAGTATATATAATACCTATATTTCCCTCTCCTTTTTTTCACCTTGTGATTATATATTGAGTTTTTGGTGCCCCTGTCATTCATAAACTAGAGCATATATGTCCTTCACTCTAACGGAAGGCTAAATAGGGACACATAGCGCAATCTTATTCGTCGATAAGTGTCGAATCGGTGGATAAGATTATGATACGTGTATGTCGTGTTAGTACGAAGGATATATATGCTCTAGTTTTTGAACTGTAGGAACACCAAAGTTCCAAAAGTATGATGAAGGATATTTGCATATTATTTACGATTTTTTGGGATATATCTGTCATTTTTCCCTTTGAAGCATGAACTTAAATATAACCCAAACATTGAATCGATTTTATGATTATAATTTTATTTCAAATAATATATATATTTTGATTGTTATTATTTTATTCTTTTTTAGGATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACGGTACAATATTAAACACCAATCTTCTTCAATTCGTAGATAAATTTTACATCAATCATATTTTAATCGACTAATTTTTCTACTTACTTATAAATTTTAGGTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAAAGGTTATAGGGTTCTTCTTGATCAAATTTCCAACTAATAGTCTTATTGTACTAAACATGAATTATATATTAAGATTTGATTATCTAGTTAATAATAATTCGATTAATTTAAAGCTGAAAA</genome_strand>
        <mrna_strand>ATCTAGATTCAAATTTAAAAGTTGAAGATTTANNAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTATTGTCGCG.................................................................................................................................................................TCAGCTTTACCCCTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATATTGTTAAAAAGAGTCTTTATATAGTAGTTGCTGGAAGTGATGACCTATGTAATACATATTTCATGCTCAAATTTCCAAGGAAGATACAATACAATATTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGAAGATGCATTGAGTGCGTGCTGCCAAGGAGGGAATATGTACTTATTATGTGACAATATCACAAGAATATGTGAAAATGACGCAAATTATTTATTTTGGGACAGTTATCATCTCACTGAGAGAGGTTATAGGGTTCTCCTTGATCAAATCTCCAATTAATAATCTTATTG---TAAACATGAATTATATATCAAGATTTGATTATCCAGTTAATAAACATTCGATTAATTTAAGGCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315060" ref_strand="+" ref_description="SGN-E315060 [cTOB-4-E16]">
      <seq>aaatttccaaggaaaatacaatacaatgttgactcatatacaaatcttatggtagatggagcttccaattttatcaatgatttgtacaatatgggagcaagaagaatttggatatttgggcttccaccaatagggtgtttgccatcgcaaatactgcgaggtggaggtccatctaaaatttgtgtcaacgaatacaatcaagctgctcgaatagcaaataccaaattatcaaataaaattcattcattaaacaaaaaattgcctcaaatcgagcttctttatatcaatatttacgatcctctactcgatattatcgccaaacacaataaatacggttttgaagatgcattgagtgcgtgttgccaaggaaggaatgagtatttgttatgtgacaacgttacaaaaatatgcgaaaatgatgcaaattatttattttgggatagttatcatctcactgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52070" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51770" g_stop="51693" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51692" i_stop="51259" i_length="434">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51258" g_stop="51003" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="334" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51002" i_stop="50906" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50905" g_stop="50779" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="461" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E315060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51770" e_stop="51693"/>
          <exon e_start="51258" e_stop="51003"/>
          <exon e_start="50905" e_stop="50779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAATGTAAGTATATATAATACCTATATTTCCCTCTCCTTTTTTTCACCTTGTGATTATATATTGAGTTTTTGGTGCCCCTGTCATTCATAAACTAGAGCATATATGTCCTTCACTCTAACGGAAGGCTAAATAGGGACACATAGCGCAATCTTATTCGTCGATAAGTGTCGAATCGGTGGATAAGATTATGATACGTGTATGTCGTGTTAGTACGAAGGATATATATGCTCTAGTTTTTGAACTGTAGGAACACCAAAGTTCCAAAAGTATGATGAAGGATATTTGCATATTATTTACGATTTTTTGGGATATATCTGTCATTTTTCCCTTTGAAGCATGAACTTAAATATAACCCAAACATTGAATCGATTTTATGATTATAATTTTATTTCAAATAATATATATATTTTGATTGTTATTATTTTATTCTTTTTTAGGATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACGGTACAATATTAAACACCAATCTTCTTCAATTCGTAGATAAATTTTACATCAATCATATTTTAATCGACTAATTTTTCTACTTACTTATAAATTTTAGGTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAA</genome_strand>
        <mrna_strand>AAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACG.................................................................................................GTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619634" ref_strand="+" ref_description="SGN-E619634 [70327]">
      <seq>tctaaatttttttagtgcatagaatagtaataatggctttattgtgtgctgtttttataatgttatttatttcatgtgaagcaaagttgcaattacgtaaggacataaatataacggcactttttgcttttggagattcaattgtggatcaaggaaataataacaatttaattactcatgcaaagtgtaattttttaccttatggaaaagatttcatgggtggtaataaaccaactggaaggtttagcaatgccaggacaccagcagacatgttagttgaagattttgggattaagaaactaatgccagcttatctagattcaaatttaaaagttgaagatttaaaaactggagtaagttttgcttcaggagcttctggatttgaccttttaactcctattgttgcgtcagctttacccctatcagtacaattagcactttttcaacaatatatttggaagatgaatggatttattggtgaagaagcaacaaagaatattgttaaaaagagtctttatatagtagttgctggaagtgatgacctatgtaatacatatttcatgctcaaatttccaaggaagatacaatataatgttgactcatatacaaatcttatggtagatggagcttccaattttatcaatgatttgtacaatatgggaggaagaagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52895" stop="50928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52595" g_stop="52319" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52091" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="407" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51929" g_stop="51693" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="644" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51692" i_stop="51259" i_length="434">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51258" g_stop="51228" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="675" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E619634" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52595" e_stop="52319"/>
          <exon e_start="52221" e_stop="52091"/>
          <exon e_start="51929" e_stop="51693"/>
          <exon e_start="51258" e_stop="51228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAGGTATACACACTATATAAAATGTAATATTACTTATGCCGAATTTAAAATCTGTATAACTCGTTTAACCATATGATCACTAATATTTTTTCTATTTCAGTTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCGGTAACTTCTTATTCTATCTAGTTATTTACATAACAGGAATTAACGACAGATAAATTTAGTAGCTAAACAAGTTCTCAACTAATTCCACTTCCTTTTTTTAGTGAATAATGATTACCTATATATTTTCTTATATATATTATTTTTTTATTTATGTAAATTAGTCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATATTGTTAAAAAGAGTCTTTATATAGTAGTTGCTGGAAGTGATGACCTATGTAATACATATTTCATGCTCAAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAATGTAAGTATATATAATACCTATATTTCCCTCTCCTTTTTTTCACCTTGTGATTATATATTGAGTTTTTGGTGCCCCTGTCATTCATAAACTAGAGCATATATGTCCTTCACTCTAACGGAAGGCTAAATAGGGACACATAGCGCAATCTTATTCGTCGATAAGTGTCGAATCGGTGGATAAGATTATGATACGTGTATGTCGTGTTAGTACGAAGGATATATATGCTCTAGTTTTTGAACTGTAGGAACACCAAAGTTCCAAAAGTATGATGAAGGATATTTGCATATTATTTACGATTTTTTGGGATATATCTGTCATTTTTCCCTTTGAAGCATGAACTTAAATATAACCCAAACATTGAATCGATTTTATGATTATAATTTTATTTCAAATAATATATATATTTTGATTGTTATTATTTTATTCTTTTTTAGGATTTGTACAATATGGGAGCAAGAAGAATTT</genome_strand>
        <mrna_strand>TCTAAA-TTTTTTTAGTGCATAGAATAGTAATAATGGCTTTATTGTGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCACTTTTTGCTTTTGGAGATTCAATTGTGGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAAACCAACTGGAAGGTTTAGCAATGCCAGGACACCAGCAGACATGTTAG.................................................................................................TTGAAGATTTTGGGATTAAGAAACTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTATTGTTGCG.................................................................................................................................................................TCAGCTTTACCCCTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATATTGTTAAAAAGAGTCTTTATATAGTAGTTGCTGGAAGTGATGACCTATGTAATACATATTTCATGCTCAAATTTCCAAGGAAGATACAATATAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTACAATATGGGAGGAAGAAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216617" ref_strand="-" ref_description="SGN-E216617 [cLEL-1-C21](-)">
      <seq>ttttttactgcataaaatagtatttatggctttattatgtgctgtttttataatggggtttatttcatgtgaagcaaagttgcaattacgtaaggacataaatataacggctctttttgcctttggagattcaattgtagatcaaggaaataataacaatttaattactcatgcaaagtgtaattttttaccttatggaaaagatttcatgggtggtaataatccaactggaagatttagcaatgccaggacaccagcagacatgttagttgaagattttgggattaagaagctaatgccagcttatctagattcaaatttaaaagttgaagatttaaaaactggagtaagttttgcttcaggagcttctggatttgaccttttaactcctgttgtcgcgtcagctttaccactatcagtacaattagcactttttcaacaatatatttggaagatgaatggatttattggtgaagaagcaacaaagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52887" stop="51539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52587" g_stop="52319" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52091" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="400" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51929" g_stop="51839" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="491" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E216617" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216617" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52587" e_stop="52319"/>
          <exon e_start="52221" e_stop="52091"/>
          <exon e_start="51929" e_stop="51839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAGGTATACACACTATATAAAATGTAATATTACTTATGCCGAATTTAAAATCTGTATAACTCGTTTAACCATATGATCACTAATATTTTTTCTATTTCAGTTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCGGTAACTTCTTATTCTATCTAGTTATTTACATAACAGGAATTAACGACAGATAAATTTAGTAGCTAAACAAGTTCTCAACTAATTCCACTTCCTTTTTTTAGTGAATAATGATTACCTATATATTTTCTTATATATATTATTTTTTTATTTATGTAAATTAGTCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATA</genome_strand>
        <mrna_strand>TTTTTTACTGCATAAAATAGTATTTATGGCTTTATTATGTGCTGTTTTTATAATGGGGTTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAG.................................................................................................TTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCG.................................................................................................................................................................TCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321363" ref_strand="+" ref_description="SGN-E321363 [cTOB-23-J4]">
      <seq>aatctatacattttttttactgcataaaatagtaataatggctttattatgtgctgtttttataatgttatttatttcatgtgaagcaaagttgcaattacgtaaggacataaatataacggctctttttgcctttggagattcaattgtagatcaaggaaataataacaatttaattactcatgcaaagtgtaattttttaccttatggaaaagatttcatgggtggtaataatccaactggaagatttagcaatgccaggacaccagcagacatgttagttgaagattttgggattaagaagctaatgccagcttatctagattcaaatttaaaagttgaagatttaaaaactggagtaagttttgcttcaggagcttctggatttgaccttttaactcctgttgtcgcgtcagctttaccactatcagtacaattagcactttttcaacaatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52899" stop="51582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52599" g_stop="52319" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52091" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="412" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51929" g_stop="51882" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="460" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E321363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52599" e_stop="52319"/>
          <exon e_start="52221" e_stop="52091"/>
          <exon e_start="51929" e_stop="51882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAGGTATACACACTATATAAAATGTAATATTACTTATGCCGAATTTAAAATCTGTATAACTCGTTTAACCATATGATCACTAATATTTTTTCTATTTCAGTTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCGGTAACTTCTTATTCTATCTAGTTATTTACATAACAGGAATTAACGACAGATAAATTTAGTAGCTAAACAAGTTCTCAACTAATTCCACTTCCTTTTTTTAGTGAATAATGATTACCTATATATTTTCTTATATATATTATTTTTTTATTTATGTAAATTAGTCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATT</genome_strand>
        <mrna_strand>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAG.................................................................................................TTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCG.................................................................................................................................................................TCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540939" ref_strand="+" ref_description="SGN-E540939 [TUS-61-H14]">
      <seq>tctcatggtgtccaaagctactgaatttttccaagaattgtacaacttgggagcaagaaaaattgggatatttggaattcctcccataggatgtttgccatcacaaagaacattagctggtgggccaaatagagtatgtgccaaggaatacaatgaagcagcccaattggctaacacaaaattctcaattgccattgattcactatcaaaaaagttggcccaatccaaacttgtgttgatagatatctataatccttttcttgatatcattgtcaaccctcaaaaatatggattagaagaagtagagaaagggtgttgtggcacaggaaatattgaggtgacaatattatgtaataaattcagtggaacatgtgaagatgatacaaaatatttattttgggatagttttcatccaactgagaaaggttataggattcttgttgatcaaatattgaaaaaatatgtcaatagatttttgtagatgatgagctcaatcaagatcaagattatgtatcaccaaatttgtatagtttggatcaaaggtccaaacttttttttgttcaattaatagttcatttatacacatccaagtgtttatgttggaatctaataaaaaaaatattgttcatgtcaaaaaaaaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="55519" stop="53857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55219" g_stop="55186" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55185" i_stop="55021" i_length="165">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55020" g_stop="54765" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="290" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="54502" i_length="263">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54501" g_stop="54158" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="634" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="653"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E540939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55219" e_stop="55186"/>
          <exon e_start="55020" e_stop="54765"/>
          <exon e_start="54501" e_stop="54158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAAGTAAGTATACCTTTGTAGTCGAATTTTAAAGGTGTCAAACATGAACCAGTCAGATCAATGAGTTTCAGATATCAAATGGTTAAATTGATAGTTCTTTATAACTAATTATCATAAATATTAATTTGCATTACATTTTGTGTTGATTCAATTTTTTTTTTCTTGAAGGAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATGGTACTATATACTTATCCTTCTATAAATTCATGATTTATTCTAAGGACGCCAAATAAATAGGTTGGGTTAAATTTGGACAGATTAAGATAAGCGCGCTAAAAATTGGACGAGTTATTGAGTTATCTAATATATAGGGATATTAACCGTTAGGATGATATGATGTAAATTAATTGTACATGTCTTTAGAGTGATCTGATAACAAAATTTTCCTTGTGTTCTTATTTTTATCAATTTTGTTATTGTGGATTATCTTTTTTTTGTAGGATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCATGTCAA</genome_strand>
        <mrna_strand>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAA.....................................................................................................................................................................GAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATG.......................................................................................................................................................................................................................................................................GATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540937" ref_strand="+" ref_description="SGN-E540937 [TUS-61-H14](-)">
      <seq>tctcatggtgtccaaagctactgaatttttccaagaattgtacaacttgggagcaagaaaaattgggatatttggaattcctcccataggatgtttgccatcacaaagaacattagctggtgggccaaatagagtatgtgccaaggaatacaatgaagcagcccaattggctaacacaaaattctcaattgccattgattcactatcaaaaaagttggcccaatccaaacttgtgttgatagatatctataatccttttcttgatatcattgtcaaccctcaaaaatatggattagaagaagtagagaaagggtgttgtggcacaggaaatattgaggtgacaatattatgtaataaattcagtggaacatgtgaagatgatacaaaatatttattttgggatagttttcatccaactgagaaaggttataggattcttgttgatcaaatattgaaaaaatatgtcaatagatttttgtagatgatgagctcaatcaagatcaagattatgtatcaccaaatttgtatagtttggatcaaaggtccaaacttttttttgttcaattaatagttcatttatacacatccaagtgtttatgttggaatctaataaaaaaaatattgttcattcaaaaaaaacaaaaaaagaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="55519" stop="53857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55219" g_stop="55186" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55185" i_stop="55021" i_length="165">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55020" g_stop="54765" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="290" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="54502" i_length="263">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54501" g_stop="54163" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="629" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="647"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E540937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55219" e_stop="55186"/>
          <exon e_start="55020" e_stop="54765"/>
          <exon e_start="54501" e_stop="54163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAAGTAAGTATACCTTTGTAGTCGAATTTTAAAGGTGTCAAACATGAACCAGTCAGATCAATGAGTTTCAGATATCAAATGGTTAAATTGATAGTTCTTTATAACTAATTATCATAAATATTAATTTGCATTACATTTTGTGTTGATTCAATTTTTTTTTTCTTGAAGGAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATGGTACTATATACTTATCCTTCTATAAATTCATGATTTATTCTAAGGACGCCAAATAAATAGGTTGGGTTAAATTTGGACAGATTAAGATAAGCGCGCTAAAAATTGGACGAGTTATTGAGTTATCTAATATATAGGGATATTAACCGTTAGGATGATATGATGTAAATTAATTGTACATGTCTTTAGAGTGATCTGATAACAAAATTTTCCTTGTGTTCTTATTTTTATCAATTTTGTTATTGTGGATTATCTTTTTTTTGTAGGATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCAT</genome_strand>
        <mrna_strand>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAA.....................................................................................................................................................................GAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATG.......................................................................................................................................................................................................................................................................GATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293137" ref_strand="+" ref_description="SGN-E293137 [cLET-12-J23]">
      <seq>ctcatggtgtccaaagctactgaatttttccaagaattgtacaacttgggagcaagaaaaattgggatatttggaattcctcccataggatgtttgccatcacaaagaacattagctggtgggccaaatagagtatgtgccaaggaatacaatgaagcagcccaattggctaacacaaaattctcaattgccattgattcactatcaaaaaagttggcccaatccaaacttgtgttgatagatatctataatccttttcttgatatcattgtcaaccctcaaaaatatggattagaagaagtagagaaagggtgttgtggcacaggaaatattgaggtgacaatattatgtaataaattcagtggaacatgtgaagatgatacaaaatatttattttgggatagttttcatccaactgagaaaggttataggattcttgttgatcaaatattgaaaaaatatgtcaatagatttttgtagatgatgagctcaatcaagatcaagattatgtatcaccaaatttgtatagtttggatcaaaggtccaaacttttttttgttcaattaatagttcatttatacacatccaagtgtttatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="55518" stop="53889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55218" g_stop="55186" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55185" i_stop="55021" i_length="165">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55020" g_stop="54765" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="289" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="54502" i_length="263">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54501" g_stop="54189" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="602" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E293137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55218" e_stop="55186"/>
          <exon e_start="55020" e_stop="54765"/>
          <exon e_start="54501" e_stop="54189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGTGTCCAAAGCTACTGAATTTTTCCAAGTAAGTATACCTTTGTAGTCGAATTTTAAAGGTGTCAAACATGAACCAGTCAGATCAATGAGTTTCAGATATCAAATGGTTAAATTGATAGTTCTTTATAACTAATTATCATAAATATTAATTTGCATTACATTTTGTGTTGATTCAATTTTTTTTTTCTTGAAGGAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATGGTACTATATACTTATCCTTCTATAAATTCATGATTTATTCTAAGGACGCCAAATAAATAGGTTGGGTTAAATTTGGACAGATTAAGATAAGCGCGCTAAAAATTGGACGAGTTATTGAGTTATCTAATATATAGGGATATTAACCGTTAGGATGATATGATGTAAATTAATTGTACATGTCTTTAGAGTGATCTGATAACAAAATTTTCCTTGTGTTCTTATTTTTATCAATTTTGTTATTGTGGATTATCTTTTTTTTGTAGGATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGG</genome_strand>
        <mrna_strand>CTCATGGTGTCCAAAGCTACTGAATTTTTCCAA.....................................................................................................................................................................GAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATG.......................................................................................................................................................................................................................................................................GATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418221" ref_strand="-" ref_description="SGN-E418221 [STM-27-G23]">
      <seq>tgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcctttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagacctcgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctccagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggggtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaggactgtaaactcttttctggttttgtgtgttctcatacattattttgtgcatctgttaatattcgaaccgtttgtgacgcccctttggttggtacccgtttgtttcctggcaaggcaatttgctcatttgatttgcattagcaggaagaaattttacacttttttttctttacatggagaaaatttaagtgaatttgattccattaactcaagtttaaattaatttgatttcttaaaaaaaaaaaaaaaagttgaaaaaactcgaggggggggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="66866" stop="16296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66566" g_stop="66509" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="169" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="262" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="296" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="364" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64734" g_stop="64383" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="709" r_length="345" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64382" i_stop="63343" i_length="1040">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.867" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63342" g_stop="63315" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="736" r_length="27" r_score="0.500"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63314" i_stop="62193" i_length="1122">
            <donor d_prob="0.336" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62192" g_stop="62182" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="747" r_length="11" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E418221" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418221" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66566" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64383"/>
          <exon e_start="63342" e_stop="63315"/>
          <exon e_start="62192" e_stop="62182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAACCCTTGTCCTTTAGCTATTGTTCTTGAGAAACCCAGTTTGTCTTTCTTATCTACTAAAACTTTACTTCCCCTGGCGGGGGAGGACAAGTCATTCAACGAGGAGATTCTGAAATTGCAGAGACTTGATTTGATCGAAGTGTTGAGTATTGGAAATTAGTTATGGTGTCTACTGAAGGATCACTTTTCGTTTTTTAAGGGTTAAAATCACGTATTTTGACTTCTTTACTTCATATGGTAGGGTAGACTCAGAAGACGTCCAGGTTATACGACTTTCATCAAATACGCCATTTGAGTATTTTAAATAACTATAGATAGATATCTTTATTTATTTCGTCCAGCGTACGAAACTTCTCTCCCCTTCTTCCAAAGGACTAATAATTGGTTAGGAAATTGACGAAAAATGAGTTGTGTACTTGTTGGCATTATTGGATTGTCAAATCAGTTTTTAAACTTGAATATTAGACGCCAAATAAATGAAGATGGTTCAACAAATAGCTAATTCGATTAAGACGTCTTTTCTTAATAATATTTAATTAAACTATTTTATCTTAATGACAACTGTCACTAAAATATGCGAGCAACACATACATTATTGTCATTAATTTAATAATTTTTTTTTTCCATATCTAAGATTCGTATAAATAAGTTTTAAAAGTTAAAATATTTCTGACAAACATGACTCTATAGTCGGGAAACTTGAATTCGAGACAATTGTTGGCCTAATAGTGTTAATCGCGATAGGCATGCAATATATCTCTACACTATTGAGGCAATTTTAATATATTGATTAGAAAAATAAAGACCTATAATTTCAGCAGACCTACAAATGTCTTAAATTAGAAAGAGAAATTATACACATTAAATAAAGTGGTCCATATATGACACAGACAAAACATATACTCATTTTTGAAATATTGATTCATTTTATTTTGCTTGAATTGATTCATGATACCGTTGTATGGAGATTATCAAGTAATATATATATATATATATATATATATATATATATATATAGATTCGTATTTTGTTGTTGCTTGATAGAAAATTGAATTTCTCCACAATAACGCATGTACTAATGTCATTAACAAGTATGTGCACAGCTTATTTACGTATCTATAATCAGTTTAAGATGCTCAAAATATAGTTAAAATTATATTTCGTTATAGATTATAAAATTAAAGCGTGAAAATTTGATTCTTTAAAATTTTATTTGAATATGCATTTTACTTTGAATTTTTTTAGAAGTTTTGTAAATAGAAGTAAAAAAATTATTATAAGCACGTTTATAAGAATTTGAAAATCAAAATTTCAAAATCTAATTAATAGACATTTAAAGATATTTTTAAAAAATTTATGATAAAACCAACAAAAGTAAACTTTTTCTTGTTATATAAGACTTTCCCACCTGTCTAATCACGAATGTGACCTTCAGACTGGGAAAATAAAATATTGTTTGAGGGTCCAACAATAAGCTAAAATCTTATCATTAACAATTAATCACCACTAGCTTACTCTAAATCCATAAAATATTATCTAAACTATGTAAAATAATAATTAATTAATTTCTTGCAATATTTAATAATTATATCCTCTACCAAAAGCTAAAATCTCTTAATTATCATAAGTTCATTAACTTTACTGTAAATCTTCGCAATGCATAAAATATTATCTAAACTATATACACAATTAATTAACACAATAGCTTTCATAATGTACACGTTTCAAAAGTTTATAAGGAGATTTTCCTAAGATGTATCTATAACTTATGTTATGACAACTAATGTATTAAAAATTATATCCGTTAAATATAAATTTTGAATTTACTTTAGTATATTTCGTATATATATACCTCTTCTATTTTATTTTACTTGGTCCCTATTTTATTTTAGTTGTTTATTTTTTAACAAATCAAGAAAGTTTTGAATTATTTTTTTCATATTATCCTTAATTAAAGATTTCTTAAAAGATTTATCATACTTTGTTAGCCTCTATAAATAAGGAGAAACGTACCCGACTTAATCATATACTAAAATCCAACATTTCGAAGCTTTCTCTTTGTTGTTATTCTTGAAAAAGAAAGTGTCTAAATTAATAAATTTGAGCTACAAAATAGCTTATAATATAATGTTTTATAGTATCATGGTTATATTCTTCATTTCTTTTTTGTTACTATTTATAAATTGTTGTGAAGGGAAAGTGCAA</genome_strand>
        <mrna_strand>TGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTCGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCCAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGGGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAGGACTGTAAACTCTTTTCTGG-TTTTGTGTGTTCTCATACATTATTTTGTGCATCTGTTAATATTCGAACCGTTTGTGACGCCCCTTTGGTTGG-TACCCG-T--TTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGCATTAGCAGGAAGAAATTTTACAC--TTTTTTTTCTTTACATGGAGAAAATTTAAGTGAATTTGATTCCATTAACTCAAGTTTAAATTAATTTGATTTCTTAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAGTTGA-AAAAACTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425477" ref_strand="-" ref_description="SGN-E425477 [STM-45-K5]">
      <seq>tgctgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcctttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcggcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctccagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccaagctcaggttccgagactatagaatgtggggtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaggactgtaaactcttttctggttttgtgtgttctcatacattattttgtgcatctgttaatattcgaaccgtttgtgacgcccctttggttggtacccgtttgtttcctggcaaggcaatttgctcatttgatttgtattagcaggaagaaattttacacttttttttctttacatggagaaaatttaagtgaatttgattccattaactcaagtttaaattaatttgattctaaaaaaaagtattn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="68800" stop="64084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68500" g_stop="68449" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="118" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="229" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="322" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="356" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="424" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64734" g_stop="64373" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="777" r_length="353" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E425477" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425477" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68500" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAACCCTTGTCCTT</genome_strand>
        <mrna_strand>TGCTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGGCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCCAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCAAGCTCAGGTTCCGAGACTATAGAATGTGGGGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAGGACTGTAAACTCTTTTCTGG-TTTTGTGTGTTCTCATACATTATTTTGTGCATCTGTTAATATTCGAACCGTTTGTGACGCCCCTTTGGTTGG-TACCCG-T--TTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATTTTACAC--TTTTTTTTCTTTACATGGAGAAAATTTAAGTGAATTTGATTCCATTAACTCAAGTTTAAATTAATTTGA-TTC-TAAAAAAAAGTATTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553761" ref_strand="+" ref_description="SGN-E553761 [cTSC-2-C18]">
      <seq>atagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttctcgtacattgtttcgtgcatctgttaatatttgaaccgtttgtgacgcgcctttggttggttgcttgatccttgtttcctggcaaggcaatttgctcatttgatttgtattagcaggaaagaaatctaacacttttttttttttcttacatggagaaaatataagtgaattttgatcccgtaactcaagtttaaatcaatttgatttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="70691" stop="64084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70391" g_stop="70308" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="216" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="282" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="393" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="486" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="520" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="588" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64734" g_stop="64376" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="949" r_length="361" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E553761" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70391" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGG-AAGAAATCTAACACTTTTTTTTTTCT-TTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAACCCTTGTC</genome_strand>
        <mrna_strand>ATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAAGAAATCTAACACTTTTTTTTTTTTCTTACATGGAGAAAATATAAGTGAATTTTGATCCCGTAACTCAAGTTTAAATCAATTTGATTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398500" ref_strand="+" ref_description="SGN-E398500 [TUS-17-D20](-)">
      <seq>gaggtttctcgtcggttaagcagcgcgaaggaaactgtcaattagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttttcgtacattgtttcgtgcatctgttaatatttgaaccgtttgtgacgcgcctttggttggttgcttgatccttgtttcctggcaaggcaatttgctcatttgatttgtattagcaggaagaaatctaacacttttttttttctttacatggagaaaatataagggaatttgattccagtaactcaagtttaaatcaatttgatgtctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="66074" stop="64084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65774" g_stop="65685" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="125" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64734" g_stop="64376" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="552" r_length="359" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E398500" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65774" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAA-TAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAACCCTTGTC</genome_strand>
        <mrna_strand>GAGGTTTCTCGTCGGTTAAGCAGCGCGAAGGAAACTGTCAATTAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTTTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGGGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATGTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368966" ref_strand="+" ref_description="SGN-E368966 [TUS-25-L7](-)">
      <seq>gccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttctcgtacattgtttcgtgcatctgttaatatttgaaccgtttgtgacgcgcctttggttggttgcttgatccttgtttcctggcaaggcaatttgctcatttgatttgtattagcaggaagaaatctaacacttttttttttctttacatggagaaaatataagtgaatttgattccagtaactcaagtttaaatcaatttgatttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="66832" stop="64084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66532" g_stop="66509" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="135" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="228" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="262" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="330" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64734" g_stop="64384" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="681" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E368966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66532" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAA</genome_strand>
        <mrna_strand>GCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346460" ref_strand="+" ref_description="SGN-E346460 [cTOF-23-L5]">
      <seq>tgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttctcgtacattgnttcgtgcatctgttaatatttgaaccgtttgtgacgcgcctttggttggttgcttgatccttgtttcctggcaggcaatttgctcatttgatttgtattagcaggaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="68780" stop="64172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68480" g_stop="68449" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="98" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="209" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="302" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="336" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="404" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64734" g_stop="64472" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="666" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E346460" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68480" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAA</genome_strand>
        <mrna_strand>TGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGNTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGC-AGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379669" ref_strand="+" ref_description="SGN-E379669 [TUS-3-E19](-)">
      <seq>attaattttcattaactcattaccattttgtcaggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttctcgtacattgtttcgtgcatctgttaatatttgaaccgtttgtgacgcgcctttggttggttgcttgatccttgtttcctggcaaggcaatttgctcatttgatttgtattagcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="66908" stop="64178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66608" g_stop="66509" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66168" g_stop="66063" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="206" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66062" i_stop="65778" i_length="285">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="299" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="333" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="401" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64734" g_stop="64478" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="658" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E379669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66608" e_stop="66509"/>
          <exon e_start="66168" e_stop="66063"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGG</genome_strand>
        <mrna_strand>ATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGAT.............................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727639" ref_strand="+" ref_description="SGN-E727639 [LA15BB10]">
      <seq>aattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaagagaaagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggggtttgccagaatccattcctcgttagttcgcactgattttgatgttttctgtcaatggaaggaaagactgcaaactcttttctggttgtgtgttctcatacattgttttgtgcatctgttaatatttgaaacgttgcctttggntggttgcttgatccttgtttcctggcaaggcaatttgctcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72591" stop="64193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72291" g_stop="72123" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="256" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="388" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68457" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="512" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68456" i_stop="65731" i_length="2726">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65730" g_stop="65685" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="558" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="592" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="660" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64734" g_stop="64493" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="891" r_length="231" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E727639" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72291" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68457"/>
          <exon e_start="65730" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTG</genome_strand>
        <mrna_strand>AATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAAGAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGGGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCTGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGG---TTGTGTGTTCTCATACATTGTTTTGTGCATCTGTTAATATTTGAAACG--T-T-----GCCTTTGGNTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280673" ref_strand="-" ref_description="SGN-E280673 [cLEL-6-A20](-)">
      <seq>gcacgagagtttgtgaccgatgtacggctgatgtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactgcactgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttctcgtacattgtttcgtgcatctgttaatatttgaaccgtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="66378" stop="64250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66083" g_stop="66058" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.808"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="119" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="153" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="221" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64734" g_stop="64550" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="406" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E280673" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66083" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGA</genome_strand>
        <mrna_strand>GCACGAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGATGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGCACTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418220" ref_strand="+" ref_description="SGN-E418220 [STM-27-G23]">
      <seq>caaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcaaacagttacacaaccagttccctattagatacagtcacggctgcagttgtacagttcaaggagatgggtggaagaatcaggtcttctgaatctccaaaggtggctgaacagcctactgagaagaagaaaggtcttgctgattggattaatatagtgaagaccatcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcctttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagacctcgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctccagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggggtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="70708" stop="64340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70408" g_stop="70308" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="233" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="299" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="410" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="503" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="537" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="605" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64734" g_stop="64640" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="700" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E418220" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70408" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTC</genome_strand>
        <mrna_strand>CAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCAAACAGTTACACAACCAGTTCCCTATTAGATACAGTCACGGCTGCAGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATCAGGTCTTCTGAATCTCCAAAGGTGGCTGAACAGCCTACTGAGAAGAAGAAAGGTCTTGCTGATTGGATTAATATAGTGAAGACCATCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTCGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCCAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGGGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590449" ref_strand="+" ref_description="SGN-E590449 [44045]">
      <seq>ttgcagagtacccaagatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgatacggtaactagacttgaggcggcggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcaaacagttacacaaccagttccctattagatacagtcacggctgcagttgtacagttcaaggagatgggtggaagaatcgggtcttctgaatctccaaaggtggctgaacagcctactgagaagaagaaaggtcttgctgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgccttcgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccacgttgttagagtttgtgaccggtgtacggctgaggtttctcggtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctccagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="71331" stop="64545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="117" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="249" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="381" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="447" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="559" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="653" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="687" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64904" g_stop="64845" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="747" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E590449" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCA-GTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTC-GTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTAC</genome_strand>
        <mrna_strand>ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGATACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCAAACAGTTACACAACCAGTTCCCTATTAGATACAGTCACGGCTGCAGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATCGGGTCTTCTGAATCTCCAAAGGTGGCTGAACAGCCTACTGAGAAGAAGAAAGGTCTTGCTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTCGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCACGTTGTTAGAGTTTGTGACCGGTGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCCAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442054" ref_strand="+" ref_description="SGN-E442054 [cSTA-31-H16]">
      <seq>caaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcaaacagttacacaaccagttccctattagatacagtcacggctgcagttgtacagttcaaggagatgggtggaagaatcaggtcttctgaatctccaaaggtggctgaacagcctactgagaagaagaaaggtcttgctgattggattaatatagtgaagaccatcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcctttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagacctcgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="70708" stop="64707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70408" g_stop="70308" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="233" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="299" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="410" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="503" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65038" g_stop="65007" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="535" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E442054" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70408" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATC</genome_strand>
        <mrna_strand>CAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCAAACAGTTACACAACCAGTTCCCTATTAGATACAGTCACGGCTGCAGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATCAGGTCTTCTGAATCTCCAAAGGTGGCTGAACAGCCTACTGAGAAGAAGAAAGGTCTTGCTGATTGGATTAATATAGTGAAGACCATCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTCGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705211" ref_strand="+" ref_description="SGN-E705211 [FA26BH10]">
      <seq>ccgttgagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72668" stop="65396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72370" g_stop="72123" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="335" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="467" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="599" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="665" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="776" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65777" g_stop="65696" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="858" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E705211" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72370" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCA</genome_strand>
        <mrna_strand>CCGTTGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247432" ref_strand="+" ref_description="SGN-E247432 [cLEG-3-A11]">
      <seq>ggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="71277" stop="65407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70977" g_stop="70934" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="176" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="308" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="374" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="485" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65777" g_stop="65707" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="556" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E247432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70977" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGA</genome_strand>
        <mrna_strand>GGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257837" ref_strand="+" ref_description="SGN-E257837 [cLEG-39-K22]">
      <seq>aaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcaaacagttacacaaccagttccctattagatacagtcacggctgcagttgtacagttcaaggagatgggtggaagaatcaggtcttctgaatctccaaaggtggctgaacagcctactgagaagaagaaaggtcttgctgattggattaatatagtgaagaccatcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcctttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="70707" stop="65760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70407" g_stop="70308" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="232" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="298" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66060" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="407" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E257837" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70407" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTA</genome_strand>
        <mrna_strand>AAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCAAACAGTTACACAACCAGTTCCCTATTAGATACAGTCACGGCTGCAGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATCAGGTCTTCTGAATCTCCAAAGGTGGCTGAACAGCCTACTGAGAAGAAGAAAGGTCTTGCTGATTGGATTAATATAGTGAAGACCATCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328616" ref_strand="+" ref_description="SGN-E328616 [cTOC-23-D12]">
      <seq>tcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72541" stop="65797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72241" g_stop="72123" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="206" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="338" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="470" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="536" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66168" g_stop="66097" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="608" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E328616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72241" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGAT</genome_strand>
        <mrna_strand>TCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379933" ref_strand="+" ref_description="SGN-E379933 [TUS-3-E19]">
      <seq>gagtgtcgacaatcttgctaggcattgtccatcgtatgcctctgaaattaatcaaaatcttccatagttggccagtgattctccaatgcaaaatcaaacagtgcgggactaagataatgttcctctttcttaggttttcatgtatcaagacagcttcttttgctagaagccatgagaaacatgccaccttcaaaggtgctttggtctccatatttgtttccatggccatatgtagttctgtgccactgtcgagttcagaagtttgtaccctgaacttactttgtatgcccttttgttttcccgattccaccatagtctgtccaccccattcttcagtccttgaaaagcttcaaggattttgaagaactcaatcagtctaggaattttccaatcattcaagtttcttgtaaaatttaattcccagccttggagcgctcacatgtcagctattgttctgtcctgacagataactaaatcaaacagatcagggaacttctctgcaagattccaattacctaaccacctatctttccacaagatggttttattaccatcacgacatcacctacactaatggtagtgtggttacctaaaattgtccaccagtttctgatagatctcccaacagtgacatgataagggttgtttgcttcttcagtcatccacccatccagttctccatactttgttgtaatcacctttttccatagagaagttgtctcatgggcatatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="68270" stop="66934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67970" g_stop="67234" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E379933" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67970" e_stop="67234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCA</genome_strand>
        <mrna_strand>GAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCCAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAAGTTGTCTCATGGGCATATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395744" ref_strand="+" ref_description="SGN-E395744 [TUS-17-D20]">
      <seq>agagtgtcgacaatcttgctaggcattgtccatcgtatgcctctgaaattaatcaaaatcttccatagttggccagtgattctccaatgcaaaatcaaacagtgcgggactaagataatgttcctctttcttaggttttcatgtatcaagacagcttcttttgctagaagccatgagaaacatgccaccttcaaaggtgctttggtctccatatttgtttccatggccatatgtagttctgtgccactgtcgagttcagaagtttgtaccctgaacttactttgtatgcccttttgttttcccgattccaccatagtctgtccaccccattcttcagtccttgaaaagcttcaaggattttgaagaactcaatcagtctaggaattttccaatcattcaagtttcttgtaaaatttaattcccagccttggagcgctcacatgtcagctattgttctgtcctgacagataactaaatcaaacagatcagggaacttctctgcaagattccaattacctaaccacctatctttccacaagatggttttattaccatcacgacatcacctacactaatggtagtgtggttacctaaaattgtccaccagtttctgatagatctcccaacagtgacatgataagggttgtttgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="68271" stop="67017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67971" g_stop="67317" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E395744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67971" e_stop="67317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCT</genome_strand>
        <mrna_strand>AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCCAACAGTGACATGATAAGGGTTGTTTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207663" ref_strand="+" ref_description="SGN-E207663 [cLEC-32-N21]">
      <seq>gagtgtcgacaatcttgctaggcattgtccatcgtatgcctctgaaattaatcaaaatcttccatagttggccagtgattctccaatgcaaaatcaaacagtgcgggactaagataatgttcctctttcttaggttttcatgtatcaagacagcttcttttgctagaagccatgagaaacatgccaccttcaaaggtgctttggtctccatatttgtttccatggccatatgtagttctgtgccactgtcgagttcagaagtttgtaccctgaacttactttgtatgcccttttgttttcccgattccaccatagtctgtccaccccattcttcagtccttgaaaagcttcaaggattttgaagaactcaatcagtctaggaattttccaatcattcaagtttcttgtaaaatttaattcccagccttggagcgctcacatgtcagctattgttctgtcctgacagataactaaatcaaacagatcagggaacttctctgcaagattccaattacctaaccacctatctttccacaagatggttttattaccatcacgacatcacctacactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="68270" stop="67097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67970" g_stop="67397" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E207663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67970" e_stop="67397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAA</genome_strand>
        <mrna_strand>GAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735566" ref_strand="+" ref_description="SGN-E735566 [LC02AF07]">
      <seq>cattatagttatgtgaaagngagtgtgtgcacacacatgaacccttacatatactgcctgaagatagagaaggatttcacatcaaacagtatatgcattcaggggaggaactagtaacaaacaagggagttcaaccagatccctttcattggaaaattatactgtgcaaatagggaaaaggatttttttgttgttatatattaactgttgaatttctttgacataaggtcttagtggtcgaggggttcaacatttgctttcgatcagaaatttagatcccaaataaggcatgctagtaaattttttagatcccttgtataagtttctggttctgctggtgtatgcaatagtacacagaaagagaccaacacaatatatgtgaacttcttgaaaataactttttcttttccttcaagcagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaagagaaagatcactgggtaacatcttttattttattttgttttcacacgcctcatttttacatgatttaatgattagctacgactatactttctcgttcaacattttttaaaaaaaaagagtgattctttcttgtcaattttttctcaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="69290" stop="68010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68998" g_stop="68310" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="690" r_length="689" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E735566" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68998" e_stop="68310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAG-TTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAA-TTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTT</genome_strand>
        <mrna_strand>ATTATA-GTTATGTGAAAGNGAGTGTGTGCACACACATGAACCCTTACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAACAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGCAAATAGGGAAAAGGATTTTTTTGTTGTTATATATTAACTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTCGAGGGGTTCAACATTTGCTTTCGATCAGAAATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTTAGAT-CCCTTGTATAAGTTTCTGGTTCTGCTGGTGTATGCAATAGTACACAGAAAGAGACCAACACAATATATGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAAGAGAAAGATCACTGGGTAACATCTTTTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATTTAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTAAAAAAAAAGAGTGATTCTTTCTTGTCAATTTTTTCTCACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368967" ref_strand="+" ref_description="SGN-E368967 [TUS-25-L7]">
      <seq>gaaagtggatatggtaatgatggttatggcgatggggtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatcttcaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaggaaaaagatcactgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72728" stop="68147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72428" g_stop="72123" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="393" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="525" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="657" r_length="132" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E368967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72428" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG</genome_strand>
        <mrna_strand>GAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTTCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAAAAAGATCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589724" ref_strand="+" ref_description="SGN-E589724 [43304]">
      <seq>ttatggtgatggagtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcgaagatcgtcaaggcaattcccaaggttgatacgcagcatgatgcgagaagtggtgtgcagaagtttagggtgaagttactagctgaaagtggtggacagagtacccaagatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcagcggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcaaacagttacacaaccagttccctattagatacagttacggctgcagttgtacagttcaaggagatgggtggaagaatcaggtcttctgaatctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72705" stop="68238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72405" g_stop="72123" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="502" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.945" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68539" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="544" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E589724" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72405" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCA</genome_strand>
        <mrna_strand>TTATGGTGATGGAGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCGAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCATGATGCGAGAAGTGGTGTGCAGAAGTTTAGGGTGAAGTTACTAGCTGAAAGTGGTGGACAGAGTACCCAAGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCAAACAGTTACACAACCAGTTCCCTATTAGATACAGTTACGGCTGCAGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATCAGGTCTTCTGAATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249062" ref_strand="+" ref_description="SGN-E249062 [cLEF-49-O20]">
      <seq>gagtgaaagtggatatggtaatgatggttatggcgatggggtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72733" stop="70037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72433" g_stop="72123" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="500" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E249062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72433" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGT</genome_strand>
        <mrna_strand>GAG-TGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201973" ref_strand="+" ref_description="SGN-E201973 [cLEC-7-G2]">
      <seq>gaatttgggcaagatacttatgggaaacgagctgaaagtggatatggtaatgatggttatggcgatggggtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72761" stop="70643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72461" g_stop="72123" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70943" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="417" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E201973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72461" e_stop="72123"/>
          <exon e_start="71020" e_stop="70943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACT</genome_strand>
        <mrna_strand>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262368" ref_strand="+" ref_description="SGN-E262368 [cLEG-56-E7]">
      <seq>gggaaacgagctgaaagtggatatggtaatgatggttatggcgatggggtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgtcacattggcttggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72740" stop="71815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72440" g_stop="72123" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E262368" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72440" e_stop="72123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG</genome_strand>
        <mrna_strand>GGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320133" ref_strand="+" ref_description="SGN-E320133 [cTOB-21-B8]">
      <seq>tttgaatcccacggagcttatcaaaatccagttcattctcagcctcaacaaccttattatcctccttacgatcaaccccaggctgctcctagttacaatcgtagtaccactccgaattcttcgtatccttcagtttattcaactccaaattatgatgatactgggaagtttgatcaaagtggacagtattttgatgaacctgtggataagtatgggaattatgggtcggggagaggtgaatttgggcgagatacgtatgggaaacgagctgaaagtggatatggtaatgatggatatggcgatggggtgtttgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72998" stop="72081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72698" g_stop="72381" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E320133" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72698" e_stop="72381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTAT</genome_strand>
        <mrna_strand>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCGTAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATGATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGGTCGGGGAGAGGTGAATTTGGGCGAGATACGTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGATATGGCGATGGGGTGTTTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716352" ref_strand="+" ref_description="SGN-E716352 [FB16DC06]">
      <seq>cctaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtgcagccctgtatgaagctgcagaaacatgggttgatgctcttaagggccgagattttcttggtggctctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccatacgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcgaatggaaagtgaagtaggcgtgtctgctagaattcaagcttaaatgacatctattggtcaatgggcaaatcacattcagggacagtttttgacactagttgattacagttccgataaagaacattacttccaagccagtgacaaattattaatatataaagaagtgcactttcacaaagttttggtagttagatacaaaataaatttggatgtgggcttgttaccattctacattaacttattcttttggatgtaagttctatttgaggtgtgctgagacaatacttgcagtttacaccattttttacccaatggtgtaaaaactcgtcactttcatgtgctaattttacttctgattttgtccaaatacaatacattgaactttttcccccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76265" stop="73937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75965" g_stop="75916" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75010" g_stop="74843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="218" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74748" g_stop="74237" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="730" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="741"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E716352" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75965" e_stop="75916"/>
          <exon e_start="75010" e_stop="74843"/>
          <exon e_start="74748" e_stop="74237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</genome_strand>
        <mrna_strand>CCTAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG..............................................................................................GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355308" ref_strand="+" ref_description="SGN-E355308 [cTOS-18-M21]">
      <seq>ttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtgcagccctgtatgaagctgcagaaacatgggttgatgctcttaagggccgagattttcttggtggctctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccatacgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcgaatggaaagtgaagtaggcgtgtctgctagaattcaagcttaaatgacatctattggtcaatgggcaaatcacattcagggacagtttttgacactagttgattacagttccgataaagaacattacttccaagccagtgacaaattattaatatataaagaagtgcactttcacaaagttttggtagttagatacaaaataaatttggatgtgggcttgttaccattctacattaacttattcttttggatgtaagttctatttgaggtgtgctgagacaatacttgcagtttacaccattttttacccaatggtgtaaaaactcgtcactttcatgtgctaattttacttctgattttgtccaaatacaatacattgaactttttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="75328" stop="73940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75010" g_stop="74843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="190" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74748" g_stop="74240" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="699" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E355308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75010" e_stop="74843"/>
          <exon e_start="74748" e_stop="74240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCC</genome_strand>
        <mrna_strand>GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG..............................................................................................GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408557" ref_strand="+" ref_description="SGN-E408557 [PPI-11-O14]">
      <seq>atttcagctttacggagagaataactgccaaatatgctggagctgcagccatgtattttgtttcaaagaaattgaagaagaaatataatattacagatgagcgtgcagccctgtatgatgctgcagaaacatgggttgatgctctcaagggccgagattttcttggtggttctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccattcgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcggatggaaagtgaagtaggtgtgtctgctagaattcaagcttaagtgacgaccattggtcaatgggcaaatcacattcaggatcagtttttgacactagttcattacagttctgagaaagaatattacttccaagctagtgacaaattattaaatatataaaggagtgcactttcacaaagttttggtagttagatacaaaataaatttggatgtgagcttgtttccattctacattgacttattcttttggatgtaagttgtatttgaggtgtgctgagacaactggcagtttacaccattttttcgccaatggtgtaaactcgtcactttcatgtgctaattttactacttatttgtccttccacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="75307" stop="73967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75007" g_stop="74843" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74748" g_stop="74251" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="659" r_length="494" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E408557" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75007" e_stop="74843"/>
          <exon e_start="74748" e_stop="74251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATT-AATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGA</genome_strand>
        <mrna_strand>ATTTCAGCTTTACGGAGAGAATAACTGCCAAATATGCTGGAGCTGCAGCCATGTATTTTGTTTCAAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGATGCTGCAGAAACATGGGTTGATGCTCTCAAGGGCCGAGATTTTCTTG..............................................................................................GTGGTTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATTCGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGGATGGAAAGTGAAGTAGGTGTGTCTGCTAGAATTCAAGCTTAAGTGACGACCATTGGTCAATGGGCAAATCACATTCAGGATCAGTTTTTGACACTAGTTCATTACAGTTCTGAGAAAGAATATTACTTCCAAGCTAGTGACAAATTATTAAATATATAAAGGAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGAGCTTGTTTCCATTCTACATTGACTTATTCTTTTGGATGTAAGTTGTATTTGAGGTGTGCTGAGAC-A-ACTGGCAGTTTACACCATTTTTTCGCCAATGGTGT--AAACTCGTCACTTTCATGTGCTAATTTTACTACTTA-TTTGTCCTTCCACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713001" ref_strand="+" ref_description="SGN-E713001 [FB06BG08]">
      <seq>tgaagctgcagaaacatgggttgatgctcttaagggccgagattttcttggtggctctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccattcgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcgaatggaaagtgaagtaggcgtgtctgctagaattcaagcttaaatgacttctattggtcaatgggcaaatcacattcagggacagtttttgacactagttgattacagttccgataaagaacattacttccaagccagtgacaaattattaatatataaagaagtacactttcacaaagttttggtagttagatacaaaataaatttggatgtgggcttgttaccattctacattaacttattcttttggatgcaagttctatttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="75192" stop="74064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74892" g_stop="74843" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74748" g_stop="74363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="436" r_length="386" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="448"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E713001" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74892" e_stop="74843"/>
          <exon e_start="74748" e_stop="74363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAG</genome_strand>
        <mrna_strand>TGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG..............................................................................................GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATTCGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACTTCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTACACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGCAAGTTCTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617408" ref_strand="+" ref_description="SGN-E617408 [90886]">
      <seq>tcccccgggctgcaggagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacataactagtcatggtaatttcagctttacggagagaataactgccaaatatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtgcatccctgtatgaagctgcagaaacatgggttgatgctctcaagggccgagactttcttggtggttctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccattcgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcggatggaaagtgaagtaggcgtgtctgctagaattcaagcttaagtgacatctattggtcaatgggcaaatcacattcaggatcagtttttgacactagttgattacagttctgagaaagaatattacttccaagctagtgacaaattattaatatataaaggagtgcactttcacaaagttttggtagttagatacaaaataaatttggatgtgggcttgtttccattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76518" stop="74094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76209" g_stop="76196" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="30" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="125" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75010" g_stop="74843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="293" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74748" g_stop="74391" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="651" r_length="358" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E617408" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76209" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74843"/>
          <exon e_start="74748" e_stop="74391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTT</genome_strand>
        <mrna_strand>AGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATAACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAATATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCATCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTCAAGGGCCGAGACTTTCTTG..............................................................................................GTGGTTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATTCGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGGATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAGTGACATCTATTGGTCAATGGGCAAATCACATTCAGGATCAGTTTTTGACACTAGTTGATTACAGTTCTGAGAAAGAATATTACTTCCAAGCTAGTGACAAATTATTAATATATAAAGGAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTTCCATTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357493" ref_strand="+" ref_description="SGN-E357493 [cTOS-23-G10]">
      <seq>atggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtgcagccctgtatgaagctgcagaaacatggggtgatgctcttaagggccgagattttcttggtggctctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccatacgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcgaatggaaagtgaagtatgcgtgtctgctacaattccagcttaaatgacatctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76584" stop="74275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76558" g_stop="76543" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="95" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="190" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75010" g_stop="74843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="358" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74748" g_stop="74575" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="532" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E357493" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76558" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74843"/>
          <exon e_start="74748" e_stop="74575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTG</genome_strand>
        <mrna_strand>ATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGGTGATGCTCTTAAGGGCCGAGATTTTCTTG..............................................................................................GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTATGCGTGTCTGCTACAATTCCAGCTTAAATGACATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271589" ref_strand="+" ref_description="SGN-E271589 [cLEM-23-P1]">
      <seq>tttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtgcagccctgtatgaagctgcagaaacatgggttgatgctcttaagggccgagattttcttggtggctctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccatacgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcgaatggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78145" stop="74322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77845" g_stop="77826" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="155" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="234" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="329" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="497" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74748" g_stop="74622" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="624" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E271589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77845" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74843"/>
          <exon e_start="74748" e_stop="74622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAG</genome_strand>
        <mrna_strand>TTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG..............................................................................................GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248675" ref_strand="+" ref_description="SGN-E248675 [cLEF-58-M15]">
      <seq>caccggaattacgcccaaaagatcttgtccttgatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78197" stop="74603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77897" g_stop="77826" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="207" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="286" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="381" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74903" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="489" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E248675" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77897" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTG</genome_strand>
        <mrna_strand>CACCGGAATTACGCCCAAAAGATCTTGTCCTTGATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405290" ref_strand="+" ref_description="SGN-E405290 [PPC-17-D10]">
      <seq>ttcatcaagaatgaggagagtcagtagaatcgccgtcttataccgggcagtggacagtgtagccgccgtggaggtgccgcagcataggatgtctacggcggttcagtttagcacgagcagcaacaagtcatctgccaggtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcctgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgatggtgaacagatggtgaactcatcagatattattgataaattatacgagaaggttcgttctggtgattctacctttgatgccgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaaatatgctggagctgcagccatgtattttgtttcgaagaaattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78461" stop="74630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78168" g_stop="77826" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="479" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="558" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="653" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74930" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="734" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E405290" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78168" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCC-GGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGA</genome_strand>
        <mrna_strand>TTCATCAAGAATGAGGAGAGTCAGTAGAATCGCCGTCTTATACCGGGCAGTGGACAGTGTAGCCGCCGTGGAGGTGCCGCAGCATAGGATGTCTACGGCGGTTCAGTTTAGCACGAGCAGCAACAAGTCATCTGCCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCCTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGATGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ATATTATTGATAAATTATACGAGAAGGTTCGTTCTGGTGATTCTACCTTTGATGCCGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAATATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456152" ref_strand="+" ref_description="SGN-E456152 [cSTS-28-N21]">
      <seq>ccgccgtggaggtgccgcagcatcggatgtctaccggcggctcagtttagcacgagccagcaacaaatcattctgccaagtctaactggttattcaacaatttgctcacggatctattctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggcaaccacgttgaccgacgaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgatggtgaacagatggtgaactcatcagatattattgataaattatacgagaaggttcgttctggtgattctacctttgatgccgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacataactagtcatggtaatttcagctttacggagagaataactgccaaatatgctggagctgcagccatgtattttgtttcgaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78407" stop="74634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78107" g_stop="77826" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="421" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="500" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="595" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74934" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="672" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E456152" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78107" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCATGGAGGTGCCACAGCATAGGATGTCTA-CGGCGGCTCAGTTTAGCACGAG-CAGCAACAAATCA-TCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTA-TCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTG</genome_strand>
        <mrna_strand>CCGCCGTGGAGGTGCCGCAGCATCGGATGTCTACCGGCGGCTCAGTTTAGCACGAGCCAGCAACAAATCATTCTGCCAAGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATTCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCAACCACGTTGACCGACGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGATGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ATATTATTGATAAATTATACGAGAAGGTTCGTTCTGGTGATTCTACCTTTGATGCCGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATAACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAATATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369126" ref_strand="-" ref_description="SGN-E369126 [TUS-23-M4](-)">
      <seq>tccttgcattttccagatcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78502" stop="74641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78205" g_stop="77826" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="515" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="594" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="689" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74941" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="759" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E369126" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369126" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78205" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAA</genome_strand>
        <mrna_strand>TCCTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326991" ref_strand="+" ref_description="SGN-E326991 [cTOC-18-K9]">
      <seq>aagtttgcattttccagatcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagacaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctctttgatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78506" stop="74657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78206" g_stop="77826" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="516" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="594" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="689" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74957" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="743" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E326991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78206" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCA</genome_strand>
        <mrna_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGA-CAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTTGATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482072" ref_strand="+" ref_description="SGN-E482072 [cSTD-20-B24]">
      <seq>ggaaagtggatcgccggaatgaggagagtcagtagaatcgccgccttataccgggcagtggatggtgcagccgccgcggaggtgccgcagcatcggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctgccaagtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggcaaccacgttgaccgaggaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgatggtgaacagatggtgaactcatcagatattattgataaattatacgagaaggttcgttctggtgattctacctttgatgccgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacataactagtcatggtaatttcagctttacggagagaataactgccaaatatgctggagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78477" stop="74662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78177" g_stop="77826" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="487" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="566" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="661" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74962" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="710" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E482072" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78177" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGC</genome_strand>
        <mrna_strand>GGAAAGTGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTATACCGGGCAGTGGATGGTGCAGCCGCCGCGGAGGTGCCGCAGCATCGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTGCCAAGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCAACCACGTTGACCGAGGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGATGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ATATTATTGATAAATTATACGAGAAGGTTCGTTCTGGTGATTCTACCTTTGATGCCGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATAACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAATATGCTGGAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327736" ref_strand="+" ref_description="SGN-E327736 [cTOC-20-G20]">
      <seq>aagtttgcattttccagatcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78506" stop="75603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78206" g_stop="77826" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="516" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="595" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="690" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E327736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78206" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG</genome_strand>
        <mrna_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305739" ref_strand="+" ref_description="SGN-E305739 [cLEX-14-C2]">
      <seq>ccggaatgaggagagtcagtagaatcgccgccttgtaccgggccagtcgacggtgcagcccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgcctgttgctggaaccaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgcctaaagaagtagtgccaccggaattaccgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78464" stop="75617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78164" g_stop="77826" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="480" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="559" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75917" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="653" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E305739" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78164" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGG-CAGTCGACGGTGCAG-CCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATG-CTGTTGCTGGAA-CAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACG-CTAAAGAAGTAGTGCCACCGGAATTA-CGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCAT</genome_strand>
        <mrna_strand>CCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCCAGTCGACGGTGCAGCCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCCTGTTGCTGGAACCAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCCTAAAGAAGTAGTGCCACCGGAATTACCGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264069" ref_strand="+" ref_description="SGN-E264069 [cLEG-64-G19]">
      <seq>cggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78463" stop="75623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78163" g_stop="77826" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="473" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="552" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75923" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="640" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E264069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78163" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACT</genome_strand>
        <mrna_strand>CGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607611" ref_strand="+" ref_description="SGN-E607611 [23580]">
      <seq>cggaatgaggagagtcagtagaatcgccgccttataccgggcagtggacagtgcagccgccgtggaggtgccgcagcataggatgtctacggcggttcagtttagcacgagcagcaacaagtcatctgccaggtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcctgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgatggtgaacagatggtgaactcatcagatattattgataaattatacgagaaggttcgttctggtgattctacctttgatgccgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78463" stop="75638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78163" g_stop="77826" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="473" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="552" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75938" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="625" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E607611" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78163" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCG</genome_strand>
        <mrna_strand>CGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTATACCGGGCAGTGGACAGTGCAGCCGCCGTGGAGGTGCCGCAGCATAGGATGTCTACGGCGGTTCAGTTTAGCACGAGCAGCAACAAGTCATCTGCCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCCTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGATGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ATATTATTGATAAATTATACGAGAAGGTTCGTTCTGGTGATTCTACCTTTGATGCCGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272344" ref_strand="+" ref_description="SGN-E272344 [cLEM-19-P20]">
      <seq>gagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78452" stop="75656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78152" g_stop="77826" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="462" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76011" i_length="532">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76010" g_stop="75956" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="517" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E272344" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78152" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76010" e_stop="75956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACC</genome_strand>
        <mrna_strand>GAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246563" ref_strand="+" ref_description="SGN-E246563 [cLEF-45-D19]">
      <seq>cctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcaggtacttattatcatcaatacatttacagctattatgcaggtacaatgcgatcaaaagtatttaatttttttacacaagtaattgcaagatgcatctcgactgttggtaaaattaattgaagtcctattcatttggagtgttagtaaaataagataactatatctgcattaaagatggatagaatggattacagaggatctggtttatacttgtctcttctatggttacttctaaatacttttcctttgcacttttctatggataatagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtatgcacttcttcttccatttatgacttttccttagcgttttcctcttaagataaatgatatttgtgaattaagtaatcaagtcagtaagtgatgtggcaaaattagcgtttcttaattgaagccttttgctctttgttaggtacttgggtcttatctaatgatcgtgattctcacaatgcangtgggtgggatgatcacttggtgcacatgttatcacctaacatataccgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78169" stop="75658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77869" g_stop="77826" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="75958" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="764" r_length="720" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E246563" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77869" e_stop="77826"/>
          <exon e_start="76677" e_stop="75958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGT-GGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATA</genome_strand>
        <mrna_strand>CCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCTTAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCAC-AATGCANGTGGGTGGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482180" ref_strand="+" ref_description="SGN-E482180 [cSTD-21-A6]">
      <seq>ggaaagtggatcgccggaatgaagagagtcagtagaatcgccgccttataccgggcagtggacggtgcagccgctttggaggtgccgcagcataggatgtctacggcggctcagtttagcacgagcagcaacaagtcatctgccaggtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcctgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgatggtgaacagatggtgaactcatcagatattattgataaattatacgagaaggttcgttctggtgattctacctttgatgccgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcatatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78477" stop="75680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78177" g_stop="77826" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="487" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="566" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75980" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="597" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E482180" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78177" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTA</genome_strand>
        <mrna_strand>GGAAAGTGGATCGCCGGAATGAAGAGAGTCAGTAGAATCGCCGCCTTATACCGGGCAGTGGACGGTGCAGCCGCTTTGGAGGTGCCGCAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAGTCATCTGCCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCCTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGATGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ATATTATTGATAAATTATACGAGAAGGTTCGTTCTGGTGATTCTACCTTTGATGCCGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCATATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326150" ref_strand="+" ref_description="SGN-E326150 [cTOC-16-C5]">
      <seq>aagtttgcattttccagatcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataanaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaagttcgttctggtgattctacatttgatgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78506" stop="75915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78206" g_stop="77826" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="516" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76215" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="576" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E326150" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78206" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATG</genome_strand>
        <mrna_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAANAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAAGTTCGTTCTGGTGATTCTACATTTGATGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206256" ref_strand="+" ref_description="SGN-E206256 [cLEC-29-L24]">
      <seq>tcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctataacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78488" stop="76234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78188" g_stop="77826" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="498" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76267" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="506" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E206256" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78188" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATT</genome_strand>
        <mrna_strand>TCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTATAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480551" ref_strand="+" ref_description="SGN-E480551 [cSTD-14-I6]">
      <seq>aaagtttgcattttccagagattttcggaagaggaaagtggatcgccggaatgaggagagtcagtagaatcgccgccttataccgggcagtggatggtgcaaccgccgtggaggtgccgcagcatcggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctgccaagtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggcaaccacgttgaccgacgaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78507" stop="76266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78207" g_stop="77826" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76566" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="496" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E480551" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78207" e_stop="77826"/>
          <exon e_start="76677" e_stop="76566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGCATTTTCC--AGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGG</genome_strand>
        <mrna_strand>AAAGTTTGCATTTTCCAGAGATTTTCGGAAGAGGAAAGTGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTATACCGGGCAGTGGATGGTGCAACCGCCGTGGAGGTGCCGCAGCATCGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTGCCAAGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCAACCACGTTGACCGACGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480679" ref_strand="+" ref_description="SGN-E480679 [cSTD-14-J6]">
      <seq>agagtttgcattttccagaagatttttcggaaagaggaaagtggaccgccggaacgaggagagtcagtagaatcgccgccttacaccgggcagtggactggtgcagccgccgtggaggtgccgcagcatcggatgtctacggcggcttcagtttagcacgagcagcaacaaatcatctgccaagtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggcaaccacgttgaccgacgaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78491" stop="76270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78178" g_stop="77826" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="389" r_length="355" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76570" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="497" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E480679" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78178" e_stop="77826"/>
          <exon e_start="76677" e_stop="76570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGAC-GGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGC-TCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTG</genome_strand>
        <mrna_strand>AGGAAAGTGGACCGCCGGAACGAGGAGAGTCAGTAGAATCGCCGCCTTACACCGGGCAGTGGACTGGTGCAGCCGCCGTGGAGGTGCCGCAGCATCGGATGTCTACGGCGGCTTCAGTTTAGCACGAGCAGCAACAAATCATCTGCCAAGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCAACCACGTTGACCGACGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248421" ref_strand="+" ref_description="SGN-E248421 [cLEG-1-L4]">
      <seq>gaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78476" stop="76283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78176" g_stop="77826" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76583" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="446" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E248421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78176" e_stop="77826"/>
          <exon e_start="76677" e_stop="76583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCT</genome_strand>
        <mrna_strand>GAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321677" ref_strand="+" ref_description="SGN-E321677 [cTOB-25-N4]">
      <seq>atcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtacaaggtttaagcattcctcgactactatgacttaccatacnagatcattgaggtcaatcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78468" stop="76325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78168" g_stop="77826" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76625" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="395" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E321677" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78168" e_stop="77826"/>
          <exon e_start="76677" e_stop="76625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATC</genome_strand>
        <mrna_strand>ATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGT-ACAAGGTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACNAGATCATTGAGGTCAATCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612786" ref_strand="+" ref_description="SGN-E612786 [62553]">
      <seq>gagcagcaacaagtcatctgccaggtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcctgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78355" stop="76327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78055" g_stop="77826" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76627" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="281" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E612786" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78055" e_stop="77826"/>
          <exon e_start="76677" e_stop="76627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCA</genome_strand>
        <mrna_strand>GAGCAGCAACAAGTCATCTGCCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCCTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710861" ref_strand="+" ref_description="SGN-E710861 [FA57AE06]">
      <seq>cccactacagcctccgaagaggaaagcggatcgccggaatgaggccattcagtagaatcgccgccttataccgggcagtcgacggtgcacccgccatggaggtgccgcagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattgaacaatttgctcacggatctatctgctagaaccgcagctcatgctgctgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtactgccaccggaattacccccaaaagatcttgtcctttatcactatgaagcttgtcctttctgcaacaaggctaaagcattccctcgactattatgacttaccatacaagatcattgaggtccatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78493" stop="76328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78197" g_stop="77826" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.94"/>
            <acceptor a_prob="0.922" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76628" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="423" r_length="51" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E710861" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78197" e_stop="77826"/>
          <exon e_start="76677" e_stop="76628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATT-CCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCC</genome_strand>
        <mrna_strand>CCCACTACAGCCTCCGAAGAGGAAAGCGGATCGCCGGAATGAGGCCATTCAGTAGAATCGCCGCCTTATACCGGGCAGTCGACGGTGCACCCGCCATGGAGGTGCCGCAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTGAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGCTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTACTGCCACCGGAATTACCCCCAAAAGATCTTGTCCTTTATCACTATGAAGCTTGTCCTTTCTGCAACAAGGCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCCTCGACTATTATGACTTACCATACAAGATCATTGAGGTCCATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487293" ref_strand="+" ref_description="SGN-E487293 [cSTE-25-G17]">
      <seq>cccaatttaaactgctgacgtggcaaactttgaaaccctcactaaacccaaaattgagttgtttacaaatcgccacaaaggcccatagaataaaagtttgcattttccagagattttcggaagaggaaagtggatcgccggaatgaagagagtcagtagaatcgccgccttataccgggcagtggacggtgcagccgctttggaggtgccgcagcataggatgtctacggcggctcagtttagcacgagcagcaacaagtcatctgccaggtctaactggttattcaacaatttgctcacggatctatctgctagaaccgcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagtccacgctaaagaagcagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcctgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78599" stop="76346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78299" g_stop="77826" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76646" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="508" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E487293" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78299" e_stop="77826"/>
          <exon e_start="76677" e_stop="76646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTAAACTGCTGACGTGGCAAAGTTTGAAACCCTCACTAAACCCAAAATTGAGTTGTTTACAAATCGCCACAAAGGCCCATAGAATAAAAGTTTGCATTTTCCAGA--TCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAG</genome_strand>
        <mrna_strand>CCCAATTTAAACTGCTGACGTGGCAAACTTTGAAACCCTCACTAAACCCAAAATTGAGTTGTTTACAAATCGCCACAAAGGCCCATAGAATAAAAGTTTGCATTTTCCAGAGATTTTCGGAAGAGGAAAGTGGATCGCCGGAATGAAGAGAGTCAGTAGAATCGCCGCCTTATACCGGGCAGTGGACGGTGCAGCCGCTTTGGAGGTGCCGCAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAGTCATCTGCCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCGCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTCCACGCTAAAGAAGCAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCCTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297407" ref_strand="+" ref_description="SGN-E297407 [cLEW-14-L8]">
      <seq>aatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78460" stop="77625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78160" g_stop="77925" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E297407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78160" e_stop="77925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCG</genome_strand>
        <mrna_strand>AATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200097" ref_strand="+" ref_description="SGN-E200097 [cLEC-8-M2]">
      <seq>tcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactgggtattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78488" stop="77650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78188" g_stop="77950" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E200097" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78188" e_stop="77950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTC</genome_strand>
        <mrna_strand>TCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGGTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723658" ref_strand="+" ref_description="SGN-E723658 [FC21BA06]">
      <seq>aatcggccgaattggtttattcatcaccgcctctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcaaatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcnccnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79407" stop="80591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79709" g_stop="80293" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="599" r_length="585" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="645"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E723658" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79709" e_stop="80293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCATCACCGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTT</genome_strand>
        <mrna_strand>GTTTATTCATCACCGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAAATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCNCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247272" ref_strand="+" ref_description="SGN-E247272 [cLEF-46-E13]">
      <seq>cgcctctttcaatattctgtgagagacgccgtagcctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaagctccaaaaggagagggaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79422" stop="81639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79722" g_stop="80027" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80028" i_stop="81318" i_length="1291">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81319" g_stop="81339" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="327" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E247272" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79722" e_stop="80027"/>
          <exon e_start="81319" e_stop="81339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTA</genome_strand>
        <mrna_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAGCCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAAAGGAGAGGGAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299898" ref_strand="+" ref_description="SGN-E299898 [cLEW-1-H10]">
      <seq>cgcctctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79422" stop="80550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79722" g_stop="80250" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E299898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79722" e_stop="80250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCT</genome_strand>
        <mrna_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716697" ref_strand="+" ref_description="SGN-E716697 [FB17DB07]">
      <seq>gcctctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattttgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgtgttttggtaaaggaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccactacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcttgatataatctagcagggatctatactcttatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcactgggataaattgacgtttttattagccgatttgtgtggatttattaattataccttgttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgcgaataggttatgcgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79423" stop="80642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79723" g_stop="80341" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="641"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E716697" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79723" e_stop="80341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTC-TATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCC-TTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAA</genome_strand>
        <mrna_strand>GCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTTTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTGTTTTGGTAAAGGAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACTACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCTTGATATAATCTAGCAGGGATCTATACTCTTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCACTGGGATAAATTGACGTTTTTATTAGCCGATTTGTGTGGATTTATTAATTATACCTTGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGCGAATAGGTTATGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205729" ref_strand="+" ref_description="SGN-E205729 [cLEC-21-L15]">
      <seq>tctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttaaggtttgtaggatttgatttgcgctgggataaattgacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79426" stop="80514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79726" g_stop="80214" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E205729" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79726" e_stop="80214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTT</genome_strand>
        <mrna_strand>TCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAAGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325832" ref_strand="+" ref_description="SGN-E325832 [cTOC-12-F9]">
      <seq>gcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaagaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaagattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataagttatgcgaaatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79431" stop="80648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79730" g_stop="80348" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E325832" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79730" e_stop="80348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAG</genome_strand>
        <mrna_strand>GCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAAGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAAGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAAGTTATGCGAAATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554004" ref_strand="+" ref_description="SGN-E554004 [cTSC-2-O22]">
      <seq>caatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaacccctttgttgaaaactacaaacaaacgaaagttgtcctcctcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79431" stop="82214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79731" g_stop="80027" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80028" i_stop="81318" i_length="1291">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81319" g_stop="81643" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="622" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81737" g_stop="81914" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="802" r_length="180" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E554004" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79731" e_stop="80027"/>
          <exon e_start="81319" e_stop="81643"/>
          <exon e_start="81737" e_stop="81914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAA-CCCTTTGTTGAAAACTACAAACAAACG-AAGTTGTCCTCCTCCTGT</genome_strand>
        <mrna_strand>CAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCCTTTGTTGAAAACTACAAACAAACGAAAGTTGTCCTCCTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306826" ref_strand="+" ref_description="SGN-E306826 [cLEY-11-B17]">
      <seq>aatattctgtgagagacgccgtaacctaatggtagggtttgcagaaatttttgattctgcgattcgctcacatgtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaataaatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79432" stop="80444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79732" g_stop="80144" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E306826" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79732" e_stop="80144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGG</genome_strand>
        <mrna_strand>AATATTCTGTGAGAGACGCCGTAACCTAATGGTAGGGTTTGCAGAAATTTTTGATTCTGCGATTCGCTCACATGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAAATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333699" ref_strand="+" ref_description="SGN-E333699 [cTOD-22-G3]">
      <seq>gtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgantagtttaggcaacttttaggctttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79440" stop="80719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79740" g_stop="80419" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E333699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79740" e_stop="80419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTT</genome_strand>
        <mrna_strand>GTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGANTAGTTTAGGCAACTTTTAGGCTTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333573" ref_strand="+" ref_description="SGN-E333573 [cTOD-22-G4]">
      <seq>gtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79440" stop="80671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79740" g_stop="80371" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E333573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79740" e_stop="80371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTT</genome_strand>
        <mrna_strand>GTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E199968" ref_strand="+" ref_description="SGN-E199968 [cLEB-9-C19]">
      <seq>gcacgaggccgtaacctaattctagggtttccttaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattctctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagaacacttgaatttatgtgtttacgctcttgttgcctgatataatctatcagggatctatactctatgtaaatctgtaaggaaaatttgtggtttttgtgggttgtgcattggttgtcaacttggatttaaggtttgtaggatttgatttgcgctgggataaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79446" stop="80509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79742" g_stop="80209" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E199968" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E199968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79742" e_stop="80209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGA</genome_strand>
        <mrna_strand>GCACGAGGCCGTAACCTAATTCTAGGGTTTCCTTAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCTCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAACACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTATCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTTGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAAGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341414" ref_strand="+" ref_description="SGN-E341414 [cTOE-23-N23]">
      <seq>agagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79443" stop="80469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79743" g_stop="80169" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E341414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79743" e_stop="80169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGAT</genome_strand>
        <mrna_strand>AGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443475" ref_strand="+" ref_description="SGN-E443475 [cSTA-38-C19]">
      <seq>gagacgccgtaacctaattctagggtttccagaaatttttgattttgtgattcaatcacaagtaatcatttgtatcgtgccaaatcgatttgaaatctgaaccaaactgttgtatttttttgcgatttgtttttgatttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagagccagcaatgaagccttgatcgaatcgattaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagagggaaaagaaggaaaagaaaagagaagagaagaaggcaaaaaaggagaagagtaatcttggatttgacaaggccactcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79444" stop="81750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79744" g_stop="80027" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80028" i_stop="81318" i_length="1291">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81319" g_stop="81450" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="417" r_length="132" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E443475" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79744" e_stop="80027"/>
          <exon e_start="81319" e_stop="81450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTA-TTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAG</genome_strand>
        <mrna_strand>GAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTTTGTGATTCAATCACAAGTAATCATTTGTATCGTGCCAAATCGATTTGAAATCTGAACCAAACTGTTGTATTTTTTTGCGATTTGTTTTTGATTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGAGCCAGCAATGAAGCCTTGATCGAATCGATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAGGAAAAGAAAAGAGAAGAGAAGAAGGCAAAAAAGGAGAAGAGTAATCTTGGATTTGACAAGGCCACTCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438139" ref_strand="+" ref_description="SGN-E438139 [cSTA-6-C18]">
      <seq>agacgccgtaacctaattctagggtttccagaaatttttgattttgtgattcaatcacaagtaatcatttgtatcgtgccaaatcgatttgaaatctgaaccaaactgttgtatttttttgcgatttgtttttgatttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79445" stop="80294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79745" g_stop="79994" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E438139" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79745" e_stop="79994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTA-TTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGA</genome_strand>
        <mrna_strand>AGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTTTGTGATTCAATCACAAGTAATCATTTGTATCGTGCCAAATCGATTTGAAATCTGAACCAAACTGTTGTATTTTTTTGCGATTTGTTTTTGATTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258773" ref_strand="+" ref_description="SGN-E258773 [cLEG-50-I18]">
      <seq>cgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79451" stop="80669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79751" g_stop="80369" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E258773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79751" e_stop="80369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACC</genome_strand>
        <mrna_strand>CGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267624" ref_strand="+" ref_description="SGN-E267624 [cLEI-8-D10]">
      <seq>ttttttggtaaagaaagggagggaagtctcagatctgaagtcgaaaagggatctgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatctatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttctcgtgggttgtgcattggttgtcaacttggatttagggtttcgaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgacgattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79578" stop="80656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79878" g_stop="80355" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E267624" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79878" e_stop="80355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTG</genome_strand>
        <mrna_strand>TTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAGTCGAAAAGGGATCTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATCTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTCTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTCGAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGACGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262213" ref_strand="+" ref_description="SGN-E262213 [cLEG-56-A19]">
      <seq>gaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgataagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgagaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttccttttcctgctgtctctctgtttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79823" stop="81135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80123" g_stop="80835" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E262213" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80123" e_stop="80835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCC-TTTCCTGCTGTCTCTCTGTTTCTTT</genome_strand>
        <mrna_strand>GAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAGAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTTCCTGCTGTCTCTCTGTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256533" ref_strand="+" ref_description="SGN-E256533 [cLEG-38-K7]">
      <seq>gaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggggggtgggaggtgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgataagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79823" stop="80965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80123" g_stop="80665" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E256533" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80123" e_stop="80665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACA</genome_strand>
        <mrna_strand>GAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGGGGGTGGGAGGTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367011" ref_strand="+" ref_description="SGN-E367011 [cLPT-6-L7]">
      <seq>ggttgtcaacttggatttacggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgataagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtactcttggaaagttatattttggcagattgctcatacaaaaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79854" stop="81032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80154" g_stop="80732" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E367011" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80154" e_stop="80732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAG</genome_strand>
        <mrna_strand>GGTTGTCAACTTGGATTTACGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTACTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAAAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271178" ref_strand="+" ref_description="SGN-E271178 [cLEM-5-E15]">
      <seq>tttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgataagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79885" stop="80956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80185" g_stop="80656" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E271178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80185" e_stop="80656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATT</genome_strand>
        <mrna_strand>TTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211523" ref_strand="+" ref_description="SGN-E211523 [cLEC-67-J16]">
      <seq>ttaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgataagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79939" stop="81092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80239" g_stop="80792" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E211523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80239" e_stop="80792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTT</genome_strand>
        <mrna_strand>TTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210734" ref_strand="+" ref_description="SGN-E210734 [cLEC-68-A17]">
      <seq>taagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgtctctctgtttctttccatggtagaaggtttaaatgaggttccgtctgtgaaattggttttcttaagattcccctgtaccctgtcacaactatagaaagttactattcggtttagtccacaatgtgagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactttgtttgtaagtcttgcttgatttagcttggttaccacttttatgcaacttcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80089" stop="81365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80389" g_stop="81065" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E210734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80389" e_stop="81065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTAT</genome_strand>
        <mrna_strand>TAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210737" ref_strand="+" ref_description="SGN-E210737 [cLEC-68-C17]">
      <seq>agtttaggcaacttttatgctttcaatttgatgtttgaggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtgttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgtctctctgtgtctttccatggtagaaggtttaaatgaggttccgtctgcgacattggttttcttaagattcccctgtaccctgtcacaactatagaaagatactattctgtttagtccacaatgagagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80091" stop="81308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80391" g_stop="81008" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E210737" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80391" e_stop="81008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGT-TTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTT</genome_strand>
        <mrna_strand>AGTTTAGGCAACTTTTATGCTTTCAATTTGATGTTTGAGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTGTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTGTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGCGACATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGATACTATTCTGTTTAGTCCACAATGAGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256892" ref_strand="+" ref_description="SGN-E256892 [cLEG-40-P10]">
      <seq>acttttaagctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcacaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgtctctctgtttctttccatggtagaaggtttaaatgaggttccgtctgtgaaattggttttcttaagattcccctgtaccctgtcacaactatagaaagttactattcggtttagtccacaatgtgagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactttgtttgtaagtcttgcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80101" stop="81329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80401" g_stop="81029" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E256892" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80401" e_stop="81029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGAT</genome_strand>
        <mrna_strand>ACTTTTAAGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCACAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207486" ref_strand="+" ref_description="SGN-E207486 [cLEC-36-A16]">
      <seq>tttttaaaaagtaatcactatacatcaaagatggttgagaaaagatttttgggtaaaacgatgttcttttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgactctctgattctttccatggtagaacgtttaaatgaggttccgcctgtgaaattggttgtcttaagattcccctgtaccctgtcacaactatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80264" stop="81215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80564" g_stop="80915" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E207486" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80564" e_stop="80915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAG</genome_strand>
        <mrna_strand>TTTTTAAAAAGTAATCACTATACATCAAAGATGGTTGAGAAAAGATTTTTGGGTAAAACGATGTTCTTTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGACTCTCTGATTCTTTCCATGGTAGAACGTTTAAATGAGGTTCCGCCTGTGAAATTGGTTGTCTTAAGATTCCCCTGTACCCTGTCACAACTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201923" ref_strand="+" ref_description="SGN-E201923 [cLEC-7-C17]">
      <seq>gagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgtctctctgtttctttccatggtagaaggtttaaatgaggttccgtctgtgaaattggttttcttaagattcccctgtaccctgtcacaactatagaaagttactattcggtttagtccacaatgtgagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactttgtttgtaagtcttgcttgatttagcttggttaccacttttatgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80300" stop="81357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80600" g_stop="81057" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E201923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80600" e_stop="81057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACT</genome_strand>
        <mrna_strand>GAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208460" ref_strand="+" ref_description="SGN-E208460 [cLEC-37-N12]">
      <seq>gaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgtctctctgtttctttccatggtagaaggtttaaatgaggttccgtctgtgaaattggttttcttaagattcccctgtaccctgtcacaactatagaaagttactattcggtttagtccacaatgtgagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactttgtttgtaagtcttgcttgatttagcttggttaccacttttatgcaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80302" stop="81360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80602" g_stop="81060" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E208460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80602" e_stop="81060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCA</genome_strand>
        <mrna_strand>GAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270310" ref_strand="+" ref_description="SGN-E270310 [cLEM-1-F22]">
      <seq>ttaaatgaggttccgtctgtgaaattggttttcttaagattcccctgtaccctgtcacaactatagaaagttactattcggtttagtccacaatgtgagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactttgtttgtaagtcttgcttgatttagcttggttaccacttttatgcaacttcatctatagaccaggggccagttctttgtgttaagtagaattaggtgactgagattgtgcattctgtcataatgatggaagtatatgttgtgaacccaacacatgtttggtgcctacacccatgtctgtttgatatgataaaagttcagtgaatgatcctcagaatctgagggatcttaattgttcgttatccttctggtcatgctgtattagtcttctatctccctctattctgaacttgttatcctggtgctctaaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagaggggaaagaaagaaaagaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80550" stop="81691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80850" g_stop="81391" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E270310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80850" e_stop="81391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAG</genome_strand>
        <mrna_strand>TTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGGAAAGAAAGAAAAGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239762" ref_strand="+" ref_description="SGN-E239762 [cLED-29-C5]">
      <seq>gagagagagattgtgcattctgtcataatgatggaagtatatgttgtgaacccaacacatgtttggtgcctacacccatgtctgtttgatatgataaaagttcagtgaatgatcctcagaatctgagggatcttaattgttcgttatccttctggtcatgctgtattagtcttctatctccctctattctgaacttgttatcctggtgctctaaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80803" stop="81796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81103" g_stop="81496" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E239762" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81103" e_stop="81496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGC</genome_strand>
        <mrna_strand>GAGAGAGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366463" ref_strand="+" ref_description="SGN-E366463 [cLPT-13-C23]">
      <seq>ccatgtctgtttgatatgataaaagttcagtgaatgatcctcagaatctgagggatcttaattgttcgttatccttctggtcatgctgtattagtcttctatctccctctattctgaacttgttatcctggtgctctaaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggtaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcaccgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctgcttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="80878" stop="82088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81178" g_stop="81643" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81788" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="518" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E366463" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81178" e_stop="81643"/>
          <exon e_start="81737" e_stop="81788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATC</genome_strand>
        <mrna_strand>CCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGTAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACCGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTGCTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327959" ref_strand="+" ref_description="SGN-E327959 [cTOC-22-D20]">
      <seq>atcgattaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81014" stop="82268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81319" g_stop="81643" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="335" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81968" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="567" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E327959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81319" e_stop="81643"/>
          <exon e_start="81737" e_stop="81968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGA</genome_strand>
        <mrna_strand>CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544406" ref_strand="+" ref_description="SGN-E544406 [TUS-66-L14]">
      <seq>ggtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaataaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcaaaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagacaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccatagtgcacgagaacagcatagagcttcagtacaagaatttgattgagaactggcttccaccaagtctgccgagtgataatctagatttggaggatgatcaatcatggctgtttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81036" stop="82411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81336" g_stop="81643" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82111" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="683" r_length="375" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E544406" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81336" e_stop="81643"/>
          <exon e_start="81737" e_stop="82111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAA</genome_strand>
        <mrna_strand>GGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAATAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAAAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGACAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCATAGTGCACGAGAACAGCATAGAGCTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCGAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307979" ref_strand="+" ref_description="SGN-E307979 [cLEY-14-C13]">
      <seq>gtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81037" stop="82324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81337" g_stop="81643" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82024" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="595" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E307979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81337" e_stop="81643"/>
          <exon e_start="81737" e_stop="82024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGT</genome_strand>
        <mrna_strand>GTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307990" ref_strand="+" ref_description="SGN-E307990 [cLEY-14-G19]">
      <seq>gtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgttccgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttgaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81037" stop="82201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81337" g_stop="81643" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81901" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="472" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E307990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81337" e_stop="81643"/>
          <exon e_start="81737" e_stop="81901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTT</genome_strand>
        <mrna_strand>GTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTCCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTGACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265127" ref_strand="+" ref_description="SGN-E265127 [cLEI-2-I11]">
      <seq>taaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81042" stop="82346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81342" g_stop="81643" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82046" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="612" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E265127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81342" e_stop="81643"/>
          <exon e_start="81737" e_stop="82046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTG</genome_strand>
        <mrna_strand>TAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265046" ref_strand="+" ref_description="SGN-E265046 [cLEI-2-E14]">
      <seq>taaagcataaaagaaggacaggaagagggaaaagagggaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81042" stop="82238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81342" g_stop="81643" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81938" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="504" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E265046" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81342" e_stop="81643"/>
          <exon e_start="81737" e_stop="81938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATC</genome_strand>
        <mrna_strand>TAAAGCATAAAAGAAGGACAGGAAGAGGGAAAAGAGGGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275238" ref_strand="+" ref_description="SGN-E275238 [cLEN-9-E8]">
      <seq>gaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81049" stop="82226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81349" g_stop="81643" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81926" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="485" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E275238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81349" e_stop="81643"/>
          <exon e_start="81737" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGA</genome_strand>
        <mrna_strand>GAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476547" ref_strand="+" ref_description="SGN-E476547 [cSTB-45-A22]">
      <seq>gaagagggtttttaaagaaaagaaaagagaagagaagaaggcgaaaaatgagaagagttatcttggatttgacaaggccactcatgagtccaaagggaagtacttgtttaaatgtctagaagatgaagctgagcagttggagaggagcaatcttactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccataatagttataaaagaaagaggcctgcctcaccttcacgtggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcatcttcttccaaagagaagcacttgccaaaacctgctcaacaagttgccgaaattactgtcacggcatctgctgaaagagccaaccctttgttgaaaactacaaacaaaggaagttgtcctcctcctgtagtagtttcagagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81076" stop="82229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81363" g_stop="81643" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="0.82"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81930" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="472" r_length="197" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E476547" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81363" e_stop="81643"/>
          <exon e_start="81737" e_stop="81930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCA--GT-ATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCA</genome_strand>
        <mrna_strand>GAAGAGGGTTTTTAAAGAAAAGAAAAGAGAAGAGAAGAAGGCGAAAAATGAGAAGAGTTATCTTGGATTTGACAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTTAAATGTCTAGAAGATGAAGCTGAGCAGTTGGAGAGGAGCAATCTTACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCATAATAGTTATAAAAGAAAGAGG-C--C-T-GCC-TCACCTTCACGTGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCATCTTCTTCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCCGAAATTACTGTCACGGCATCTGCTGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAAGGAAGTTGTCCTCCTCCTGTAGTAGTTTCAGAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324556" ref_strand="+" ref_description="SGN-E324556 [cTOC-9-F21]">
      <seq>aagaaagaaaagaaaagagaagagaagaaggctggaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81073" stop="82186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81373" g_stop="81643" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81886" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="421" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E324556" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81373" e_stop="81643"/>
          <exon e_start="81737" e_stop="81886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTA</genome_strand>
        <mrna_strand>AAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTGGAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307597" ref_strand="+" ref_description="SGN-E307597 [cLEY-16-E8]">
      <seq>agaagatattaggctaataaggagaagagtaatcttggatttggctaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81093" stop="82291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81390" g_stop="81643" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81991" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="508" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E307597" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81390" e_stop="81643"/>
          <exon e_start="81737" e_stop="81991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTT</genome_strand>
        <mrna_strand>AGAAGATA-TTAGGCTAATAAGGAGAAGAGTAATCTTGGATTTGGCTAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230956" ref_strand="+" ref_description="SGN-E230956 [cLED-5-E23]">
      <seq>acttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81164" stop="82398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81464" g_stop="81643" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82098" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="542" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E230956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81464" e_stop="81643"/>
          <exon e_start="81737" e_stop="82098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCA</genome_strand>
        <mrna_strand>ACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233454" ref_strand="+" ref_description="SGN-E233454 [cLED-9-B6]">
      <seq>acttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81164" stop="82330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81464" g_stop="81643" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82030" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="474" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E233454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81464" e_stop="81643"/>
          <exon e_start="81737" e_stop="82030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGA</genome_strand>
        <mrna_strand>ACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237976" ref_strand="+" ref_description="SGN-E237976 [cLED-18-F21]">
      <seq>aggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgagggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81221" stop="82445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81521" g_stop="81643" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82146" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="533" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E237976" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81521" e_stop="81643"/>
          <exon e_start="81737" e_stop="82146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAAC</genome_strand>
        <mrna_strand>AGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235616" ref_strand="+" ref_description="SGN-E235616 [cLED-15-G3]">
      <seq>aggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81221" stop="82423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81521" g_stop="81643" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82123" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="510" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E235616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81521" e_stop="81643"/>
          <exon e_start="81737" e_stop="82123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGC</genome_strand>
        <mrna_strand>AGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416042" ref_strand="+" ref_description="SGN-E416042 [STM-22-K12]">
      <seq>cctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaatagtaataaaaggaagagacctgcctcaccttcacgtggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagcttcttccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcagggcatctgctgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagtagtttcagagcctagtacatccaattgtgggtgggttgaccgtgtggctgtagacaattcaactccatcatgttccaaagtgcacgagaacagcatagaatttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgttccaaagaaaacctaagcaagctcgagttgaggaaaaaaatataggcagcagcaatgacaaaacttgtggaagctgctcttcattgtggcagccacgggcacaataccttcctgatgttgacttgtatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81232" stop="82538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81532" g_stop="81643" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="0.82"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82238" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="611" r_length="505" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E416042" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81532" e_stop="81643"/>
          <exon e_start="81737" e_stop="82238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAG--T-ATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGC-G--GCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATT</genome_strand>
        <mrna_strand>CCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAATAGTAATAAAAGGAAGA-G---ACCT-GCC-TCACCTTCACGTGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGCTTCTTCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGGCATCTGCTGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGTAGTTTCAGAGCCTAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGTAGACAATTCAACTCCATCATGTTCCAAAGTGCACGAGAACAGCATAGAATTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTCCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAATATAGGCAGCAGCAATGACAAAACTTGTGGAAGCTGCTCTTCATTGT-G--GCAGCCACGGGCACAATACCTTCCTGATGTTGACTTGTATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438172" ref_strand="+" ref_description="SGN-E438172 [cSTA-6-M18]">
      <seq>cctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaatagtaataaaaggaagagacctgcctcaccttcacgtggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagcttcttccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcagggcatctgctgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagtagtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81232" stop="82225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81532" g_stop="81643" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="0.82"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81925" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="298" r_length="192" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E438172" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81532" e_stop="81643"/>
          <exon e_start="81737" e_stop="81925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAG--T-ATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAG</genome_strand>
        <mrna_strand>CCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAATAGTAATAAAAGGAAGA-G---ACCT-GCC-TCACCTTCACGTGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGCTTCTTCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGGCATCTGCTGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGTAGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377898" ref_strand="+" ref_description="SGN-E377898 [TUS-20-F22]">
      <seq>tgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagcagccacgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagttttgacaggatttangcgcgatgacaaaaatgttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81259" stop="82686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81559" g_stop="81643" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82386" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="735" r_length="650" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E377898" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81559" e_stop="81643"/>
          <exon e_start="81737" e_stop="82386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTT</genome_strand>
        <mrna_strand>TGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTTGACAGGATTTANGCGCGATGACAAAAATGTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239802" ref_strand="+" ref_description="SGN-E239802 [cLED-29-E14]">
      <seq>tgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81259" stop="82449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81559" g_stop="81643" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82149" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="498" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E239802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81559" e_stop="81643"/>
          <exon e_start="81737" e_stop="82149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTA</genome_strand>
        <mrna_strand>TGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233159" ref_strand="+" ref_description="SGN-E233159 [cLED-6-K8]">
      <seq>tgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgcgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggctttcaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81259" stop="82446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81559" g_stop="81643" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82146" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="495" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E233159" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81559" e_stop="81643"/>
          <exon e_start="81737" e_stop="82146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAAC</genome_strand>
        <mrna_strand>TGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGCGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTTCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240104" ref_strand="+" ref_description="SGN-E240104 [cLED-32-I2]">
      <seq>aagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcactatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81295" stop="82143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81595" g_stop="81643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="81843" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="156" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E240104" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81595" e_stop="81643"/>
          <exon e_start="81737" e_stop="81843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACT</genome_strand>
        <mrna_strand>AAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCACTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335751" ref_strand="+" ref_description="SGN-E335751 [cTOE-8-N23]">
      <seq>tacttcaccttcaccttcacgaggtggcatacaggcgccatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81303" stop="82496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81603" g_stop="81643" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="0.95"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82196" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="502" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E335751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81603" e_stop="81643"/>
          <exon e_start="81737" e_stop="82196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCACCTTCACCTTCACGAGGTGGCATACAGGCG-CATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCA</genome_strand>
        <mrna_strand>TACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299924" ref_strand="+" ref_description="SGN-E299924 [cLEW-11-A21]">
      <seq>tggtagccattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaaccaagttgcggaagttactgtcaggacatctgccgaaagagcccaacccctttgttgaaaactaccaaacaaaccgaagttgtcctcctcctgtagccagtttcagagccaagtaccatccaattgtgggtgggttgaccgtgtggctgaagacaacccaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtaccaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagccagctcgagttgaggaaaaaaacttaggcggcggtgaccaaacttgtggaagctgcagttcattgtggcagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81436" stop="82498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81627" g_stop="81628" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81629" i_stop="81736" i_length="108">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81737" g_stop="82198" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="473" r_length="471" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E299924" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81627" e_stop="81628"/>
          <exon e_start="81737" e_stop="82198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAG-CATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAA-CAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAG-CCAA-CCCTTTGTTGAAAACTA-CAAACAAA-CGAAGTTGTCCTCCTCCTGTAG-CAGTTTCAGAGCCAAGTA-CATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTA-CAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGC</genome_strand>
        <mrna_strand>TG............................................................................................................GTAGCCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACCAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCCAACCCCTTTGTTGAAAACTACCAAACAAACCGAAGTTGTCCTCCTCCTGTAGCCAGTTTCAGAGCCAAGTACCATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACCCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACCAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCCAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACCAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302515" ref_strand="+" ref_description="SGN-E302515 [cLEX-1-C23]">
      <seq>caaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagcagccacgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctgtgggaacgtgatgtagtttgaacaggatttaggcgcgatgacaaaaatgttcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81475" stop="82758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81775" g_stop="82458" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E302515" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81775" e_stop="82458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAAC-TGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTAT</genome_strand>
        <mrna_strand>CAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTGTGGGAACGTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415571" ref_strand="-" ref_description="SGN-E415571 [STM-21-H5]">
      <seq>aaatatcagcttcttccaaagagaagcacttgccaaaacctgctcaacaatttgcggaagttactgtcagggcatctgctgaaagagccaaccctttgttgaaaagtacaaacaaacgaagttgtcctcctcctgtagtagtttcagagcctagtacatccaattgtgggtgggttgaccgtgtggctgtagacaatgcaactccatcatgttccaaagtgcacgagaacagcatagaatttcagtacaggaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgttccaaagaaaatctaagcaagctcgagttgaggaaaaaaatataggcagcagcaatgacaaaacttgtggaagctgctcttcattgtggcagccacgggcacaataccttcctgatgttgacttgtatgcattgccctacacagttccgttttgaatcacataacaactgtgtatagaaaatgtttttagctggatatacttcccagggaattttgtagctcttctctggaaaactgatgtagttttaaactggatttaggcgcgatgacaaaaatattctttttattttttagctgccagttggtatcttcagaaatccattgttctacatcaatcaaaatgatcaatatagtattggatttttccttctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81493" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81782" g_stop="82477" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="715"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E415571" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415571" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81782" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAG-TA--TCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGC-G--GCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAAC-CGTGTGTATAGAAGATG-TTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGG-GAACTGATGTAG-TTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>AAATATCAGCTTCTTCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAATTTGCGGAAGTTACTGTCAGGGCATCTGCTGAAAGAGCCAACCCTTTGTTGAAAAGTACAAACAAACGAAGTTGTCCTCCTCCTGTAGTAGTTTCAGAGCCTAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGTAGACAATGCAACTCCATCATGTTCCAAAGTGCACGAGAACAGCATAGAATTTCAGTACAGGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTCCAAAGAAAATCTAAGCAAGCTCGAGTTGAGGAAAAAAATATAGGCAGCAGCAATGACAAAACTTGTGGAAGCTGCTCTTCATTGT-G--GCAGCCACGGGCACAATACCTTCCTGATGTTGACTTGTATGCATTGCCCTACACAGTTCCGTTTTGAATCACATAACAACTGTGTATAGAAAATGTTTTTAGCTGGATATACTTCCCAGGGAATTTTGTAGCTCTTCTCTGGAAAACTGATGTAGTTTTAAACTGGATTTAGGCGCGATGACAAAAATATTC-TTTTTATTTTTTAGCTGCCAGTTGGTATCTTCAGAAATCCATTGTTCTACATCAATCAAAATGATCAATATAGTATTGGAT-TTTTCCTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302516" ref_strand="+" ref_description="SGN-E302516 [cLEX-1-C23](-)">
      <seq>agtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagcagccacgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagtttgaacaggatttaggcgcgatgacaaaaatgttcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtattggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81489" stop="82764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81789" g_stop="82454" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="694"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E302516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81789" e_stop="82454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATA</genome_strand>
        <mrna_strand>AGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435931" ref_strand="-" ref_description="SGN-E435931 [STM-62-C20]">
      <seq>caaagagaagcacttgccaaaacctgctcaacaagttgcggaaattactgtcagggcatctgctgaaagagccaaccctttgttgaaaactacaaacaaaggaagttgtcctcctcctgtagtagtttcagagcctagtacatccaattgtgggtggattgaccgtgtggctgtagacaatgcaactccatcatgttccaaagtgcacgagaacagcatagaatttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtggtaatctagatttggaggatgatcaatcatggctgttccaaagaaaacctaagcaagctcgagttgaggaaaaaaatataggcagcagcaatgaaaaaacttgtggaagctgttcttcattgtggcagccacgggcacaataccttcctgaagttgacttgtatgcattgccctacacagttccgttttgaatcacataacaactgtgtatagaaaatgttttagctggatatatactgcccagggaattttgtagctcttctctggaaactgatgtagttttaaactggatttaggcgcgatgacgaaaatattcttttttatttttttagctgccagttggtatcttcagaaatccattgttctacatcaatcaaaatgatcaatatagtattggagattttttttctcaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81495" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81795" g_stop="82477" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="706"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E435931" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435931" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81795" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGC-G--GCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAAC-CGTGTGTATAGAAGATGTTTTAGCTGG--ATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAG-TTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTA-TTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>CAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAATTACTGTCAGGGCATCTGCTGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAAGGAAGTTGTCCTCCTCCTGTAGTAGTTTCAGAGCCTAGTACATCCAATTGTGGGTGGATTGACCGTGTGGCTGTAGACAATGCAACTCCATCATGTTCCAAAGTGCACGAGAACAGCATAGAATTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGGTAATCTAGATTTGGAGGATGATCAATCATGGCTGTTCCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAATATAGGCAGCAGCAATGAAAAAACTTGTGGAAGCTGTTCTTCATTGT-G--GCAGCCACGGGCACAATACCTTCCTGAAGTTGACTTGTATGCATTGCCCTACACAGTTCCGTTTTGAATCACATAACAACTGTGTATAGAAAATGTTTTAGCTGGATATATACTGCCCAGGGAATTTTGTAGCTCTTCTCTGGAAACTGATGTAGTTTTAAACTGGATTTAGGCGCGATGACGAAAATATTCTTTTTTATTTTTTTAGCTGCCAGTTGGTATCTTCAGAAATCCATTGTTCTACATCAATCAAAATGATCAATATAGTATTGGAGATTTTTTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544405" ref_strand="+" ref_description="SGN-E544405 [TUS-66-L14](-)">
      <seq>cctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaatctacaaccaaacgaagttgtcctcctcgtgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtgtctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggcgacaaaacttgctggaagctgcagttcattgtggcagcagccatcgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttccttttgtgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagtttgaacaggatttaggcgcgatgacaaaaatgttcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtattggatattttctttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81517" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81817" g_stop="82477" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="674"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E544405" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81817" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTG-TGGAAGCTGCAGTTCATTGTGGCAGCAGCCA-CGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTT-TGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>CCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAATCTACAACCAAACGAAGTTGTCCTCCTCGTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGTCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGCGACAAAACTTGCTGGAAGCTGCAGTTCATTGTGGCAGCAGCCATCGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTGTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691709" ref_strand="+" ref_description="SGN-E691709 [LH_Ea06N03]">
      <seq>cctgtaacactttgttgaaaactacaaacaagcgaagctgtccccctcctgtaggagtttcagagccaagtacatccaattgtgggtgggttgaccatgtggctgaagacaacgcaactccatcatgttccaaagcgcacgagaacagcatagagtttcaatacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaagcggcagtgacaaaacttgtggaagctgctgttcattgtggcagccacgcgcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagtttgaacaggatttaggcgcgatgacaaaaatattcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtattggatattttctttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81568" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81863" g_stop="82477" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E691709" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81863" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>CCTGTAACACTTTGTTGAAAACTACAAACAAGCGAAGCTGTCCCCCTCCTGTAGGAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCATGTGGCTGAAGACAACGCAACTCCATCATGTTCCAAAGCGCACGAGAACAGCATAGAGTTTCAATACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAAGCGGCAGTGACAAAACTTGTGGAAGCTGCTGTTCATTGT-G--GCAGCCACGCGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATATTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377897" ref_strand="+" ref_description="SGN-E377897 [TUS-20-F22](-)">
      <seq>aaaaatacaaacaaaaaaagttgtcctcctcctgtagcagtttcagagccaaggacatccaattgtgggtgggttgaccgtgtgggtgaaaacaacgcaactccattttgttccaaagggcacgagaacagcataaagtttcagtacaaaaatttgattgaaaactggcttcccccaagtttgccaagtgataatttaaatttggaggatgatcaatcatggctgtttcaaaaaaaacctaagcaaggtcgagttgaggaaaaaaaattagggggcggggacaaaacttgtggaaagtgcagttcattgtggcagcaaccccgggcccaaaaccttcctgatgttgagttgtatgcattgccccacccagttcctttttgaatcacaaaaccgggggtataaaaaatgttttagctggatatactggtcagggaattttgtagcttttttttgggaaatgatgtagtttgaacaggatttaggggcgatgacaaaaaagtttttttttattttttagctgccagttgctattttcaaaaatcccttgttttacatcaatgaaaatgatcaaaatagtattggatattttttttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81580" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81880" g_stop="82472" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="646"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E377897" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81880" e_stop="82472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTT</genome_strand>
        <mrna_strand>AAAAATACAAACAAAAAAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGGACATCCAATTGTGGGTGGGTTGACCGTGTGGGTGAAAACAACGCAACTCCATTTTGTTCCAAAGGGCACGAGAACAGCATAAAGTTTCAGTACAAAAATTTGATTGAAAACTGGCTTCCCCCAAGTTTGCCAAGTGATAATTTAAATTTGGAGGATGATCAATCATGGCTGTTTCAAAAAAAACCTAAGCAAGGTCGAGTTGAGGAAAAAAAATTAGGGGGCGGGGACAAAACTTGTGGAAAGTGCAGTTCATTGTGGCAGCAACCCCGGGCCCAAAACCTTCCTGATGTTGAGTTGTATGCATTGCCCCACCCAGTTCCTTTTTGAATCACAAAACCGGGGGTATAAAAAATGTTTTAGCTGGATATACTGGTCAGGGAATTTTGTAGCTTTTTTTTGGGAAATGATGTAGTTTGAACAGGATTTAGGGGCGATGACAAAAAAGTTTTTTTTTATTTTTTAGCTGCCAGTTGCTATTTTCAAAAATCCCTTGTTTTACATCAATGAAAATGATCAAAATAGTATTGGATATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416043" ref_strand="-" ref_description="SGN-E416043 [STM-22-K12]">
      <seq>tagtttcagagcctagtacatccaattgtgggtgggttgaccgtgtggctgtagacaattcaactccatcatgttccaaagtgcacgagaacagcatagaatttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgttccaaagaaaacctaagcaagctcgagttgaggaaaaaaatataggcagcagcaatgacaaaacttgtggaagctgctcttcattgtggcagccacgggcacaataccttcctgatgttgacttgtatgcattgccctacacagttccgttttgaatctcataacaactgtgtgtatagaaaatgttttagctggatatatactgcccagggaattttgtagctcttctctggaaactgatgtagttttaaactggatttaggcgcggtgacgaaaatattcttttttatttttttagctgccagttgttatcttcagaaatccattgttctacatcaatcaaaatgatcaatatagtattggtttttcaataaaaaaaaaaaaaaaccaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81618" stop="82769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81917" g_stop="82454" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="576"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E416043" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416043" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81917" e_stop="82454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGC-G--GCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAAC--C-GTGTGTATAGAAGATGTTTTAGCTGG--ATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAG-TTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTA-TTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATA</genome_strand>
        <mrna_strand>TAGTTTCAGAGCCTAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGTAGACAATTCAACTCCATCATGTTCCAAAGTGCACGAGAACAGCATAGAATTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTCCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAATATAGGCAGCAGCAATGACAAAACTTGTGGAAGCTGCTCTTCATTGT-G--GCAGCCACGGGCACAATACCTTCCTGATGTTGACTTGTATGCATTGCCCTACACAGTTCCGTTTTGAATCTCATAACAACTGTGTGTATAGAAAATGTTTTAGCTGGATATATACTGCCCAGGGAATTTTGTAGCTCTTCTCTGGAAACTGATGTAGTTTTAAACTGGATTTAGGCGCGGTGACGAAAATATTCTTTTTTATTTTTTTAGCTGCCAGTTGTTATCTTCAGAAATCCATTGTTCTACATCAATCAAAATGATCAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623444" ref_strand="+" ref_description="SGN-E623444 [88536]">
      <seq>caattgtgggtgggttgaccgtgtggctgtagacaattcaactccatcatgttccaaagtgcacgagaacagcatagaatttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgttccaaagaaaacctaagcaagctcgagttgaggaaaaaaatataggcagcagcaatgacaaaacttgtggaagctgctcttcattgtggcagccacgggcacaataccttcctgatgttgacttgtatgcattgccctacacagttccgttttgaatctcataacaactgtgtgtatagaaaatgttttagctggatatatactgcccagggaattttgtagctcttctctggaaactgatgtagttttaaactggatttaggcgcggtgacgaaaatattcttttttatttttttagctgccagttgttatcttcagaaatccattgttctacatcaatcaaaatgatcaatatagtattggatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81639" stop="82769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81939" g_stop="82454" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="547"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E623444" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81939" e_stop="82454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGC-G--GCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAAC--C-GTGTGTATAGAAGATGTTTTAGCTGG--ATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAG-TTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTA-TTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATA</genome_strand>
        <mrna_strand>CAATTGTGGGTGGGTTGACCGTGTGGCTGTAGACAATTCAACTCCATCATGTTCCAAAGTGCACGAGAACAGCATAGAATTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTCCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAATATAGGCAGCAGCAATGACAAAACTTGTGGAAGCTGCTCTTCATTGT-G--GCAGCCACGGGCACAATACCTTCCTGATGTTGACTTGTATGCATTGCCCTACACAGTTCCGTTTTGAATCTCATAACAACTGTGTGTATAGAAAATGTTTTAGCTGGATATATACTGCCCAGGGAATTTTGTAGCTCTTCTCTGGAAACTGATGTAGTTTTAAACTGGATTTAGGCGCGGTGACGAAAATATTCTTTTTTATTTTTTTAGCTGCCAGTTGTTATCTTCAGAAATCCATTGTTCTACATCAATCAAAATGATCAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236843" ref_strand="+" ref_description="SGN-E236843 [cLEL-7-N3](-)">
      <seq>gtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagcagccacgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagtttgaacaggatttaggcgcgatgacaaaaatgttcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtattggatattttctttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81758" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82058" g_stop="82477" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="435"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E236843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82058" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>GTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237017" ref_strand="+" ref_description="SGN-E237017 [cLEL-7-N3](-)">
      <seq>tttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagcagccacgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagtttgaacaggatttaggcgcgatggcaaaaatgttcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtattggatattttctttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81805" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82105" g_stop="82477" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="388"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E237017" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82105" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>TTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGGCAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91675" stop="92572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91975" g_stop="92298" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91975" e_stop="92298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATACCAAGAAGATATATGTTTTTCTCTCGCTTTATGCAAAAACACAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTAGCAATTGTATTATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAAATAAGCGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTTTCTTTATACAAAACATAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91675" stop="92572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91975" g_stop="92282" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91975" e_stop="92282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATACCAAGAAGATATATGTTTTTCTCTCGCTTTATGCAAAAACACAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTAGCAATTGTATTATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAAATAAGCGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTTTCTTTATACAAAACATAAACAGAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91675" stop="92427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91975" g_stop="92127" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91975" e_stop="92127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATATATATTGCATAATTATAAGTGTATACCAAGAAGATATATGTTTTTCTCTCGCTTTATGCAAAAACACAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTAGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91676" stop="92724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91976" g_stop="92424" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91976" e_stop="92424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATATATATTGCATAATTATAAGTGTATACCAAGAAGATATATGTTTTTCTCTCGCTTTATGCAAAAACACAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTAGCAATTGTATTATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAAATAAGCGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTTTCTTTATACAAAACATAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGACGAACGAGATTTCTGGGAGAGAGACG-CTGGCAAATTTTAGCTAACGTTCGCTATGGAGCACAATTAAATCAAACCCTGGCTATTCCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216150" ref_strand="+" ref_description="SGN-E216150 [cLEL-13-M23](-)">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="109599" stop="110447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109899" g_stop="110146" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="265"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E216150" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109899" e_stop="110146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATTTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGTTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGATTTTTATTA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATACAAGTTGATTATTGATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350143" ref_strand="+" ref_description="SGN-E350143 [cTOS-4-E15]">
      <seq>taactcttcattttacttctctcttcttaacatatactttaattttaaatttgtgtgatcttctgttgttaagattttcttaatcttgtatgagggttgttatctttatagatattgagctttgttcactttgtttggtcatattgtcactttgttttcttgactgtttttgcaatcttttactataaagataatatgaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctctattttattccaatacgacaaaatgtagtgtttatgctattctggttgacattaccttgctaaatgatctatctatgacatagttttaaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaataggaattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtaaaagttatgtgatgcgattctgtgctaacaggtgattttttatcaaagatgatctagaagatccaagcatgaaagatgcatctgtttttatcattctatacagtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacatgcancacgaaatatattatgaacaaatttggcagctataatgtgttcgaatcactaatttttctcattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111470" stop="110111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111170" g_stop="110411" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E350143" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111170" e_stop="110411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTG---TT-T--TTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTTCGAATCACTAATTTTTCTTATTGAA</genome_strand>
        <mrna_strand>TAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGATCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTATAGATATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATGAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTTTATTCCAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCTAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTATCATTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCANCACGAAATATATTATGAACAAATTTGGCAGCTATAATGTGTTCGAATCACTAATTTTTCTCATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351720" ref_strand="+" ref_description="SGN-E351720 [cTOS-8-F11]">
      <seq>ttgtttttgtcatgcttttcttctttgtttctcatggtgtaggaaccagcagaaaaatggtgggttctttttcacatggagacacccgtggagttctacaccagggttctttttcacatggagacacccgtggagttctacaccaggtgtaggaaccggcagaaaaatggtgggttctttatcacatggagacacccgtggagttttacaccaggtgattttttatcaagatgatccagaagatccaagcatgaaagatgcatctgtttttctatacagtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacatgcacatgaaaatatattatgaacaaatttggcagctataatgtgttcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="114724" stop="110131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114424" g_stop="114389" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114388" i_stop="114296" i_length="93">
            <donor d_prob="0.844" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114295" g_stop="114228" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114227" i_stop="113721" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113720" g_stop="113679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="146" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113678" i_stop="113316" i_length="363">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113315" g_stop="113248" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="214" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113247" i_stop="110634" i_length="2614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110633" g_stop="110431" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="416" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E351720" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114424" e_stop="114389"/>
          <exon e_start="114295" e_stop="114228"/>
          <exon e_start="113720" e_stop="113679"/>
          <exon e_start="113315" e_stop="113248"/>
          <exon e_start="110633" e_stop="110431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTGTCATGCTTTTCTTCTTTGTTTCTCATGGTAACTGTATTGTTTTTTTTATTTTTTATAATTAGCCTCTTTTCATTTTAATTACTCATGAATTGTTTTGATTTATGAATTGTGTATGTGTAGGTGTAGGAACCAGCAGAAAAATGGTGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAGGTCGGTTTCTTTTTCTTCTAATTTAAACTTGCATCTTTAGTCTCTCAAAAATTGACTATTTCTGTTAGATGTATGTATATGTACAAGAAGTGTTTATAATTTTTTTCCTTTCTAGATTAATATTTAAATTTAAAATAAAATTTTTTAATTTCTTATTTGTTCATTCATTATTTGAATCTCAAAAATCTCTAACCAAAAAAAATATGAATAATAATTTAATTTAAACTTGCATCTTTAGTCTCTCAAAAATTGACTATTTATGTTAGATGTATGTATATGTACAAGAAGTGTTTATAATTTTTTTCCTTTCTAGATTAATATTTAAATTTAAAATAAAAATTTTTAATTTCTTATTTGTTCATTCATTGTCTGAATCTCAAAAATCTCTTAACCAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATTAAAAAAATTATGAAACATAGATATGTATATGTACAAGAAGTGTTTACAATTTCTTTTTCTTTCTAGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACTAGGTCGGTTTCTTCTTCTAATTTAAACTTGCATCTTCAGTCTCTCAAAAATTGACTATTTCTGTTAGATGTATGTATATGTACGAGAAGTGTTTATAATTGTTTTCCTTTCTAAATTAATATTTAAAGTTAAAATGAAATTTTTTAATTTCTTATTTGTTCATTCATTTTGTCTGAATCTCAAAAATCTCTAACCAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATTAAAAAATTATGAAACAAAGTTATGTATATGTACAAGAAGTGTTTACAATTTCTTTTTCTTTCTAGATTAATGTTTATTTATTACTCATGAATTGTTTTGATTTACGAATTGTGTATGTGTAGGTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAGGTCTGGAAAAATTGAAATTCCTCAGTCTCTCATTAAAAAAATATGAATAATAATTTATAATTATAATTATTATATATATGGAGTGGTGTAGCTCCTGCATTTTAGGCTTTAGTGATGTAGCTTCTGCTTTTTAGACTTTTAGCAGTAGTATAGGCTACTATTTTTACTTTTTAGGCTTTTAGCAAAGACTTTTCCTCCATTTTCTACCTATCCATTATTTTTTTACCAAGTGGCTGAATATTCATCACACATTATGAAATATCTTCTATGTAGAAATTTCCATCCAACCTTTAAATAACTTTTCATTTTTCTCATTGATTTTGTATGAATCTCAAAGATCTCTAACCAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAAAAAAAATGAAACATAGAGATGTATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTTTTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAAATATGAAACATAGAGATGTGTAATGTAGCTCCTGCTTTTTAGGCTTTTATCAGTAGTGTAATTTTTATTTTTTTGGCTTTTAGCAAAAACTTTTCCTCCTTTTTTTTATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAAAAATTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCTCAAATATCTCTAACAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAGAAAAATATGAAACATAGAGATGTACATGTACAAGAAGTGTTTGTAATTTCTTTTTCTTTCTAGATTAATGTTTAAAATTCAAATAAAAAAGAAAAAATAGGGGAAGTGGTAATAATAATTACATAAGATGTACTACAACAGTAAACATGATACGTGTCTTAAAGAAAATATACATTGCTTTATGCACAATAACAAATGGAGTGGTGTAGCTCCTGCATTTTAGGCTTTTATCATTAGTGTAGGCTACTATTTTCACTTTTTAGGCTTTTAGCAAAGACTTCTCCTCCTTGTTTTTTTTACCTATCCATTATTTTTTTACCAAGTGGCTGAATATTCTTCCTACATTATGATGTAGAAATTTCCATCCAACCTTTAAATAACTCTTCGTTTTTCTAATTTCCATCCAACCTTTAAGTAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTTCGAAT</genome_strand>
        <mrna_strand>TTGTTTTTGTCATGCTTTTCTTCTTTGTTTCTCATG.............................................................................................GTGTAGGAACCAGCAGAAAAATGGTGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................GTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTTTTATC-AAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTTCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352390" ref_strand="+" ref_description="SGN-E352390 [cTOS-9-H9]">
      <seq>tttttttttttttttagctgccaaatttgttcataatatattttcgtgtgcatgtcatactactgaatgtcgaagtgagatacttacatagtttaacattttcatatgtgggaatactaattacatacatttacatactgtatagaatgataaaaacagatgcatctttcatgcttggatcttctagatcatctttgataaaaaatcacctgttagcacagaatcgcatcacataacttttacaacacaaaatgaaaaaaaatgtggcaacattaagcttcaactaagcctcatctttgaattcctatttcacgattgacataagacattttatataataacaccaatatgaacaaaagtatgttatttttttttaaaactatgtcatagatagatcatttagcaaggtaatgtcaaccagaatagcataaacactacattttgtcgtattggaataaaatagagaattagtggaagaaaataagaaagccaaatggaatgtaaagcatcaattacaaatgtatgaaatgagatcttaattaaagattcatattatctttatagtaaaagattgcaaaaacagtcaagaaaacaaagtgacaatatgaccaaacaaagtgaacaaagctcaatatctataaagattacaaccctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="110142" stop="111382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110431" g_stop="111082" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E352390" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110431" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAACACATTATAGCTGCCAAATTTGTTCATAATATATTTTCATGTGCATGTCATACTACTGAATGTCGAAGTGAGATACTTACATAGTTTAACATTTTCATATGTGGGAATACTAATTACATACATTTACATACTGTAT---A-G--AAAAACAGATGCATCTTTCATGCTTGGATCTTCTGGATCATCTTTGATAAAAAATCACCTGTTAGCACAGAATCGCATCACATAACTTTTACAACACAAAATGATAAAAAATGTGGCAACATTAAGCTTCAACTAAGCCTCATCTTTGAATTCCTATTTCACGATTGACATAAGACATTTTATATAATAACACCAATATGAACAAAAGTATGTTATTTTTTTTTAAAACTATGTCATAGATAGATCATTTAGCAAGGTAATGTCAACCAGAATAGCATAAACACTACATTTTGTCGTATTAGAATAGAATAGAGAATTAGTGGAAGAAAATAAGAAAGCCAAATGGAATGTAAAGCATCAATTACAAATGTATGAAATGAGATCTTAATTAAAGATTAATATTATCTTTATAGTAAAAGATTGCAAAAACAGTCAAGAAAACAAAGTGACAATATGACCAAACAAAGTGAACAAAGCTCAATAGTTGTAAAGATAACAACCCTCATA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTAGCTGCCAAATTTGTTCATAATATATTTTCGTGTGCATGTCATACTACTGAATGTCGAAGTGAGATACTTACATAGTTTAACATTTTCATATGTGGGAATACTAATTACATACATTTACATACTGTATAGAATGATAAAAACAGATGCATCTTTCATGCTTGGATCTTCTAGATCATCTTTGATAAAAAATCACCTGTTAGCACAGAATCGCATCACATAACTTTTACAACACAAAATGAAAAAAAATGTGGCAACATTAAGCTTCAACTAAGCCTCATCTTTGAATTCCTATTTCACGATTGACATAAGACATTTTATATAATAACACCAATATGAACAAAAGTATGTTATTTTTTTTTAAAACTATGTCATAGATAGATCATTTAGCAAGGTAATGTCAACCAGAATAGCATAAACACTACATTTTGTCGTATTGGAATAAAATAGAGAATTAGTGGAAGAAAATAAGAAAGCCAAATGGAATGTAAAGCATCAATTACAAATGTATGAAATGAGATCTTAATTAAAGATTCATATTATCTTTATAGTAAAAGATTGCAAAAACAGTCAAGAAAACAAAGTGACAATATGACCAAACAAAGTGAACAAAGCTCAATATCTATAAAGATTACAACCCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351023" ref_strand="+" ref_description="SGN-E351023 [cTOS-6-O1]">
      <seq>tttttgtcatgcttttcttctttgtttctcatggtgtaggaatctgcagaaaaatggtgttttctttttcacatggagacacccgtggagttctacaccagggttctttttcacatggagacacccgtggagttctacaccaggtgtaggaaccggcagaaaaatggtgggttctttatcacatggagacacccgtggagttttacaccaggtgattttttatcaagatgatccagaagatccaagcatgaaagatgcatctgtttttctatacagtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacatgcacatgaaaatatattatgaacaaatttggcagctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="114721" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114421" g_stop="114389" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114388" i_stop="114296" i_length="93">
            <donor d_prob="0.844" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114295" g_stop="114228" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="101" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114227" i_stop="113721" i_length="507">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113720" g_stop="113679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="143" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113678" i_stop="113316" i_length="363">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113315" g_stop="113248" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="211" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113247" i_stop="110634" i_length="2614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110633" g_stop="110436" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="408" r_length="197" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E351023" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114421" e_stop="114389"/>
          <exon e_start="114295" e_stop="114228"/>
          <exon e_start="113720" e_stop="113679"/>
          <exon e_start="113315" e_stop="113248"/>
          <exon e_start="110633" e_stop="110436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTCATGCTTTTCTTCTTTGTTTCTCATGGTAACTGTATTGTTTTTTTTATTTTTTATAATTAGCCTCTTTTCATTTTAATTACTCATGAATTGTTTTGATTTATGAATTGTGTATGTGTAGGTGTAGGAACCAGCAGAAAAATGGTGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAGGTCGGTTTCTTTTTCTTCTAATTTAAACTTGCATCTTTAGTCTCTCAAAAATTGACTATTTCTGTTAGATGTATGTATATGTACAAGAAGTGTTTATAATTTTTTTCCTTTCTAGATTAATATTTAAATTTAAAATAAAATTTTTTAATTTCTTATTTGTTCATTCATTATTTGAATCTCAAAAATCTCTAACCAAAAAAAATATGAATAATAATTTAATTTAAACTTGCATCTTTAGTCTCTCAAAAATTGACTATTTATGTTAGATGTATGTATATGTACAAGAAGTGTTTATAATTTTTTTCCTTTCTAGATTAATATTTAAATTTAAAATAAAAATTTTTAATTTCTTATTTGTTCATTCATTGTCTGAATCTCAAAAATCTCTTAACCAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATTAAAAAAATTATGAAACATAGATATGTATATGTACAAGAAGTGTTTACAATTTCTTTTTCTTTCTAGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACTAGGTCGGTTTCTTCTTCTAATTTAAACTTGCATCTTCAGTCTCTCAAAAATTGACTATTTCTGTTAGATGTATGTATATGTACGAGAAGTGTTTATAATTGTTTTCCTTTCTAAATTAATATTTAAAGTTAAAATGAAATTTTTTAATTTCTTATTTGTTCATTCATTTTGTCTGAATCTCAAAAATCTCTAACCAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATTAAAAAATTATGAAACAAAGTTATGTATATGTACAAGAAGTGTTTACAATTTCTTTTTCTTTCTAGATTAATGTTTATTTATTACTCATGAATTGTTTTGATTTACGAATTGTGTATGTGTAGGTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAGGTCTGGAAAAATTGAAATTCCTCAGTCTCTCATTAAAAAAATATGAATAATAATTTATAATTATAATTATTATATATATGGAGTGGTGTAGCTCCTGCATTTTAGGCTTTAGTGATGTAGCTTCTGCTTTTTAGACTTTTAGCAGTAGTATAGGCTACTATTTTTACTTTTTAGGCTTTTAGCAAAGACTTTTCCTCCATTTTCTACCTATCCATTATTTTTTTACCAAGTGGCTGAATATTCATCACACATTATGAAATATCTTCTATGTAGAAATTTCCATCCAACCTTTAAATAACTTTTCATTTTTCTCATTGATTTTGTATGAATCTCAAAGATCTCTAACCAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAAAAAAAATGAAACATAGAGATGTATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTTTTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAAATATGAAACATAGAGATGTGTAATGTAGCTCCTGCTTTTTAGGCTTTTATCAGTAGTGTAATTTTTATTTTTTTGGCTTTTAGCAAAAACTTTTCCTCCTTTTTTTTATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAAAAATTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCTCAAATATCTCTAACAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAGAAAAATATGAAACATAGAGATGTACATGTACAAGAAGTGTTTGTAATTTCTTTTTCTTTCTAGATTAATGTTTAAAATTCAAATAAAAAAGAAAAAATAGGGGAAGTGGTAATAATAATTACATAAGATGTACTACAACAGTAAACATGATACGTGTCTTAAAGAAAATATACATTGCTTTATGCACAATAACAAATGGAGTGGTGTAGCTCCTGCATTTTAGGCTTTTATCATTAGTGTAGGCTACTATTTTCACTTTTTAGGCTTTTAGCAAAGACTTCTCCTCCTTGTTTTTTTTACCTATCCATTATTTTTTTACCAAGTGGCTGAATATTCTTCCTACATTATGATGTAGAAATTTCCATCCAACCTTTAAATAACTCTTCGTTTTTCTAATTTCCATCCAACCTTTAAGTAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTT</genome_strand>
        <mrna_strand>TTTTTGTCATGCTTTTCTTCTTTGTTTCTCATG.............................................................................................GTGTAGGAATCTGCAGAAAAATGGTGTTTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................GTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTTTTATC-AAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351400" ref_strand="+" ref_description="SGN-E351400 [cTOS-12-O6]">
      <seq>tttttgtcatgcttttcttctttgtttctcatggtgtaggaaccagcagaaaaatggtgggttctttttcacatggagacacccgtggagttctacaccagggttctttttcacatggagacacccgtggagttctacaccaggtgtaggaaccggcagaaaaatggtgggttctttatcacatggagacacccgtggagttttacaccaggtgattttttatcaagatgatccagaagatccaagcatgaaagatgcatctgtttttctatacagtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacatgcacatgaaaatatattatgaacaaatttggcagctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="114721" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114421" g_stop="114389" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114388" i_stop="114296" i_length="93">
            <donor d_prob="0.844" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114295" g_stop="114228" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="101" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114227" i_stop="113721" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113720" g_stop="113679" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="143" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113678" i_stop="113316" i_length="363">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113315" g_stop="113248" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="211" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113247" i_stop="110634" i_length="2614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110633" g_stop="110436" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="408" r_length="197" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E351400" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114421" e_stop="114389"/>
          <exon e_start="114295" e_stop="114228"/>
          <exon e_start="113720" e_stop="113679"/>
          <exon e_start="113315" e_stop="113248"/>
          <exon e_start="110633" e_stop="110436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTCATGCTTTTCTTCTTTGTTTCTCATGGTAACTGTATTGTTTTTTTTATTTTTTATAATTAGCCTCTTTTCATTTTAATTACTCATGAATTGTTTTGATTTATGAATTGTGTATGTGTAGGTGTAGGAACCAGCAGAAAAATGGTGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAGGTCGGTTTCTTTTTCTTCTAATTTAAACTTGCATCTTTAGTCTCTCAAAAATTGACTATTTCTGTTAGATGTATGTATATGTACAAGAAGTGTTTATAATTTTTTTCCTTTCTAGATTAATATTTAAATTTAAAATAAAATTTTTTAATTTCTTATTTGTTCATTCATTATTTGAATCTCAAAAATCTCTAACCAAAAAAAATATGAATAATAATTTAATTTAAACTTGCATCTTTAGTCTCTCAAAAATTGACTATTTATGTTAGATGTATGTATATGTACAAGAAGTGTTTATAATTTTTTTCCTTTCTAGATTAATATTTAAATTTAAAATAAAAATTTTTAATTTCTTATTTGTTCATTCATTGTCTGAATCTCAAAAATCTCTTAACCAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATTAAAAAAATTATGAAACATAGATATGTATATGTACAAGAAGTGTTTACAATTTCTTTTTCTTTCTAGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACTAGGTCGGTTTCTTCTTCTAATTTAAACTTGCATCTTCAGTCTCTCAAAAATTGACTATTTCTGTTAGATGTATGTATATGTACGAGAAGTGTTTATAATTGTTTTCCTTTCTAAATTAATATTTAAAGTTAAAATGAAATTTTTTAATTTCTTATTTGTTCATTCATTTTGTCTGAATCTCAAAAATCTCTAACCAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATTAAAAAATTATGAAACAAAGTTATGTATATGTACAAGAAGTGTTTACAATTTCTTTTTCTTTCTAGATTAATGTTTATTTATTACTCATGAATTGTTTTGATTTACGAATTGTGTATGTGTAGGTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAGGTCTGGAAAAATTGAAATTCCTCAGTCTCTCATTAAAAAAATATGAATAATAATTTATAATTATAATTATTATATATATGGAGTGGTGTAGCTCCTGCATTTTAGGCTTTAGTGATGTAGCTTCTGCTTTTTAGACTTTTAGCAGTAGTATAGGCTACTATTTTTACTTTTTAGGCTTTTAGCAAAGACTTTTCCTCCATTTTCTACCTATCCATTATTTTTTTACCAAGTGGCTGAATATTCATCACACATTATGAAATATCTTCTATGTAGAAATTTCCATCCAACCTTTAAATAACTTTTCATTTTTCTCATTGATTTTGTATGAATCTCAAAGATCTCTAACCAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAAAAAAAATGAAACATAGAGATGTATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTTTTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAAATATGAAACATAGAGATGTGTAATGTAGCTCCTGCTTTTTAGGCTTTTATCAGTAGTGTAATTTTTATTTTTTTGGCTTTTAGCAAAAACTTTTCCTCCTTTTTTTTATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAAAAATTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCTCAAATATCTCTAACAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAGAAAAATATGAAACATAGAGATGTACATGTACAAGAAGTGTTTGTAATTTCTTTTTCTTTCTAGATTAATGTTTAAAATTCAAATAAAAAAGAAAAAATAGGGGAAGTGGTAATAATAATTACATAAGATGTACTACAACAGTAAACATGATACGTGTCTTAAAGAAAATATACATTGCTTTATGCACAATAACAAATGGAGTGGTGTAGCTCCTGCATTTTAGGCTTTTATCATTAGTGTAGGCTACTATTTTCACTTTTTAGGCTTTTAGCAAAGACTTCTCCTCCTTGTTTTTTTTACCTATCCATTATTTTTTTACCAAGTGGCTGAATATTCTTCCTACATTATGATGTAGAAATTTCCATCCAACCTTTAAATAACTCTTCGTTTTTCTAATTTCCATCCAACCTTTAAGTAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTT</genome_strand>
        <mrna_strand>TTTTTGTCATGCTTTTCTTCTTTGTTTCTCATG.............................................................................................GTGTAGGAACCAGCAGAAAAATGGTGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG...........................................................................................................................................................................................................................................................................................................................................................................GTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTTTTATC-AAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352249" ref_strand="+" ref_description="SGN-E352249 [cTOS-13-B18]">
      <seq>ttttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaatagggattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtataagttatgtggtgcgattctgtgctaacaggtgattttttatcaaagatgatccagaagatccaagcatgaaagatgcatctgtttttgtctaattctataccgtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacattcacatgaaaatatattatgaaacaatttggcagctataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111460" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111160" g_stop="110438" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E352249" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111160" e_stop="110438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTG----T-T-T--TTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTG</genome_strand>
        <mrna_strand>TTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGGATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTATAAGTTATGTGGTGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTGTCTAATTCTATACCGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATTCACATGAAAATATATTATGAAACAATTTGGCAGCTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350595" ref_strand="+" ref_description="SGN-E350595 [cTOS-5-D2]">
      <seq>ctcttcattttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaatagggattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtataagttatgtggtgcgattctgtgctaacaggtgattttttatcaaagatgatccagaagatccaagcatgaaagatgcatctgtttttgtctaattctataccgtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacattcacatgaaaatatattatgaacaaatttggcagctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111467" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111167" g_stop="110443" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E350595" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111167" e_stop="110443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTG----T-T-T--TTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATA</genome_strand>
        <mrna_strand>CTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGGATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTATAAGTTATGTGGTGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTGTCTAATTCTATACCGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATTCACATGAAAATATATTATGAACAAATTTGGCAGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349850" ref_strand="+" ref_description="SGN-E349850 [cTOS-3-F3]">
      <seq>ttcattttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaatagggattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtataagttatgtggtgcgattctgtgctaacaggtgattttttatcanagatgatccagaagatccaagcatgaaagatgcatctgtttttgtctaattctataccgtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacattcacatgtaaatatattatgaacaaatttggcagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111464" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111164" g_stop="110446" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="738"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E349850" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111164" e_stop="110446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTG----T-T-T--TTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCT</genome_strand>
        <mrna_strand>TTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGGATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTATAAGTTATGTGGTGCGATTCTGTGCTAACAGGTGATTTTTTATCANAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTGTCTAATTCTATACCGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATTCACATGTAAATATATTATGAACAAATTTGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353777" ref_strand="+" ref_description="SGN-E353777 [cTOS-10-N20]">
      <seq>tgttgttaagattttcttaatcttgtatgagggttgttatctttacaactattgagctttgttcactttgtttggtcatattgtcactttgttttcttgactgtttttgcaatcttttactataaagataatattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctctattctattctaatacgacaaaatgtagtgtttatgctattctggttgacattaccttgctaaatgatctatctatgacatagtttaaaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaataggaattcaaagatgaggcttagttgaagcttaatgttgccacattttttatcattttgtgttgtaaaagttatgtgatgcgattctgtgctaacaggtgattttttatcaagatgatccagaagatccaagcatgaaagatgcatctgtttttctatacagtatgtaaatgtatgtaattagtattcccacatatgaaaatggtaaactatgtaagtatctcacttcgacattcagtagtatgacatgcacatgaaaatatattatnganncaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111407" stop="110161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111107" g_stop="110465" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="666"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E353777" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111107" e_stop="110465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATT</genome_strand>
        <mrna_strand>TGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTAAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATC-AAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGGTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339728" ref_strand="+" ref_description="SGN-E339728 [cTOE-16-M16]">
      <seq>ttcattttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaatagggattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtataagttatgtggtgcgattctgtgctaacaggtgattttttatcaaagatgatccagaagatccaagcatgaaagatgcatctgtttttgtctaattctataccgtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111464" stop="110205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111164" g_stop="110505" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E339728" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111164" e_stop="110505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTT--------TCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCAC</genome_strand>
        <mrna_strand>TTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGGATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTATAAGTTATGTGGTGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTGTCTAATTCTATACCGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355240" ref_strand="+" ref_description="SGN-E355240 [cTOS-18-I2]">
      <seq>ttttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaatagggattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtataagttatgtggtgcgattctgtgctaacaggtgattttttatcaaagatgatccagaagatccaagcatgaaagatgcatctgtttttgtctaattctataccgtatgtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111460" stop="110262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111160" g_stop="110571" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E355240" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111160" e_stop="110571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATA</genome_strand>
        <mrna_strand>TTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGGATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTATAAGTTATGTGGTGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349729" ref_strand="+" ref_description="SGN-E349729 [cTOS-3-E3]">
      <seq>ttcattttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaatagggattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtataagttatgtggtgcgattctgtgctaacaggtgattttttatcaaagatgatccagaagatccaagcatgaaagatgcatnctgttttgtctaattctataccgtatgtaaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111464" stop="110266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111164" g_stop="110588" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E349729" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111164" e_stop="110588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGAT</genome_strand>
        <mrna_strand>TTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGGATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTATAAGTTATGTGGTGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338773" ref_strand="+" ref_description="SGN-E338773 [cTOE-21-D5]">
      <seq>cgaggattttatcttctctcttcttaacatatatctttaattttaaatttgtgtgatcttctgttgttaagattttcttaatcttgtatgagggttgttatctttatagatattgagctttgttcactttgtttggtcatattgtcactttgttttcttgactgtttttgcaatcttttactataaagataatatgaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctctattttattccaatacgacaaaatgtagtgtttatgctattctggttgacattaccttgctaaatgatctatctatgacatagttttaaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111461" stop="110432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111166" g_stop="110732" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E338773" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111166" e_stop="110732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTTTA-CTTCTCTCTTCTTAACATATA-CTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAA</genome_strand>
        <mrna_strand>CGAGGATTTTATCTTCTCTCTTCTTAACATATATCTTTAATTTTAAATTTGTGTGATCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTATAGATATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATGAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTTTATTCCAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354486" ref_strand="+" ref_description="SGN-E354486 [cTOS-17-L6]">
      <seq>ttttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111460" stop="110644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111160" g_stop="110937" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E354486" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111160" e_stop="110937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAA</genome_strand>
        <mrna_strand>TTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395455" ref_strand="+" ref_description="SGN-E395455 [TUS-16-D9](-)">
      <seq>aattttaatttttgatatgttcattgattttgtctgaatcacaaatatctcaaacaaaaaaaatatgaataataatttataattataattagtataataaataaataaaaatatgaaacatagagatatatatgtacaagaagtgtttataatttctttttctttgtagattaatgtttaaatttaaaataaataaaagaaaagataggggaagtggttataataattatttttttatatattttactcttaatattaaatacttattcgataaattattttaagacctaatactctactaaacatcatcaatagaaatagtatagtaaaatacgttaataattattttttaattgtgtatcaaattaaataataactaataaaaattaacgaaagtaatgtatgattaacttgacacattatgagtttaataatgattaaagaagacagatgtaaattgcttttcactttttgttttcttttttcttaggaattccacttcctacattacacgtagcccctcctttttttttattttattttctttctacattaatatttaaatttaaaataaaaactttcaatttctgatatgttcattgattttgtctgaatcacaaatatcgcaaacaaaaaaaaatatgaataataatttataattataatttatataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="112825" stop="111540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112527" g_stop="111841" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E395455" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112527" e_stop="111841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTT-TTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAA</genome_strand>
        <mrna_strand>AATTTTAATTTTTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAAC--AAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAATAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATGTATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGATGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTCCACTTCCTACATTACACGTAGCCCCTCCTTTTTTTTTATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAAC-AAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204982" ref_strand="+" ref_description="SGN-E204982 [cLEC-16-K4]">
      <seq>gtgtttataatttctttttctttttagattaatgtttaaatttaaaataaaaaaagaaaagataggggaagtggttataataattacataagatgtactacaacagtaaaaatgatacgtgtcttaaaaaaattatatattattttatacactaacaaatggagtgatgtagctcctgctttttatgtttttagcagtagtgtaattttcatttttttggcttttagcaaaacttttcctcctttttttaattttattttctttctacattaatatttaaatttaatataaaaaattttaatttctgatatgttcattgattttgtctgaatcacaaatatctcaaacaaaaaaaatatgaataataatttataattataattagtataataaataaataaaaatatgaaacatagagatatatatgtacaagaagtgtttataatttctttttctttgtagattaatgtttaaatttaaaataaataaaagaaaagataggggaagtggttataataattatttttttatatattttactcttaatattaaatacttattcgataaattatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="113120" stop="111943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112820" g_stop="112243" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E204982" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112820" e_stop="112243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTA</genome_strand>
        <mrna_strand>GTGTTTATAATTTCTTTTTCTTTTTAGATTAATGTTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTATTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGTTTTTAGCAGTAGTGTAATTTTCATTTTTTTGGCTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAATATAAAAAATTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAAC--AAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAATAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395345" ref_strand="+" ref_description="SGN-E395345 [TUS-16-D9]">
      <seq>agtgtttataatttctttttctttttagattaatgtttaaatttaaaataaaaaaagaaaagataggggaagtggttataataattacataagatgtactacaacagtaaaaatgatacgtgtcttaaaaaaattatatattattttatacactaacaaatggagtgatgtagctcctgctttttatgtttttagcagtagtgtaattttcatttttttggcttttagcaaaacttttcctcctttttttaattttattttctttctacattaatatttaaatttaatataaaaaattttaatttctgatatgttcattgattttgtctgaatcacaaatatctcaaacaaaaaaaatatgaataataatttataattataattagtataataaataaataaaaatatgaaacatagagatatatatgtacaagaagtgtttataatttctttttctttgtagattaatgtttaaatttaaaataaataaaagaaaagataggggaagtggttataataattatttttttatatattttacccttaatatttaaatacttatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="113121" stop="111958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112821" g_stop="112256" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-E395345" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112821" e_stop="112256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATA-TTAAATACTTATTCG</genome_strand>
        <mrna_strand>AGTGTTTATAATTTCTTTTTCTTTTTAGATTAATGTTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTATTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGTTTTTAGCAGTAGTGTAATTTTCATTTTTTTGGCTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAATATAAAAAATTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAAC--AAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAATAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACCCTTAATATTTAAATACTTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339665" ref_strand="+" ref_description="SGN-E339665 [cTOE-16-G7]">
      <seq>ttctcctctgtgtttctgttggttgtttgctgtattgggttctctctatttctccagctgaggaaacaaaggaaacactcttcactgacaaaggtcacagagaccaaaggaacacttcatttactttgaggagcacatccaaatctggatctctcatctccgttacagtagatggaagaagttattcgaattgctaacattgaaccccaagaagacaaaggtgaagatcaaggacgtccaagggtagaatagtaaatttaacctgacaagtacacactctcatgattttagaacgctccatcttactcattagcacagaatagacgcaatattttcaacacgagaatcagttcttccatttctcttgctccaactccaacagcaacgaatttcaggagctggtgtcttcattttatatttggtacggtattcgaataatttatcaagagcttgacgcatgtagagaatgcctaggggatccacagactctggacaacagatgcagttattctagtgtaccaggaaccgatataaagttgaaggagatcggtcatgaaccatgtaggcattgaagcagctgccaatgatttcaatggtaaccggtctctctcaagtctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117275" stop="125606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117575" g_stop="117621" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117622" i_stop="120410" i_length="2789">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120411" g_stop="120455" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="92" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120456" i_stop="122060" i_length="1605">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122061" g_stop="122184" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="216" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122185" i_stop="122608" i_length="424">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122609" g_stop="122787" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="395" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122788" i_stop="123551" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123552" g_stop="123669" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="513" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123670" i_stop="125197" i_length="1528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125198" g_stop="125306" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="622" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E339665" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117575" e_stop="117621"/>
          <exon e_start="120411" e_stop="120455"/>
          <exon e_start="122061" e_stop="122184"/>
          <exon e_start="122609" e_stop="122787"/>
          <exon e_start="123552" e_stop="123669"/>
          <exon e_start="125198" e_stop="125306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTCTGTGTTTCTGTTGGTTGTTTGCTGTATTGGGTTCTCTCTGTTGAGTTTTGTCGTTCTAATGCATCTTTTTGTTTATTTCTTCGATTTATGCTTCCTTTAATGTCTTTGCGTTGCTTGTTTGCTGTCTTGAGCTTTCTCCTTTGTGTTTTTGTTGATTGTCTGCTGTATTGGGTTCTCTCTGTTGAGTTTTGTCGTTCTAGTGCATCTTTCTGTCTTTATTTCTTCGATTTATGCTTCCTTCAATGTTCTATTTGTTACTTAAATTGTTGCTTTCTGTGCTTTGTTCAATGTTCCATTTGTTATATTTAAATTGTTGCTCTCTGTTTTAAACCTAATGTTACTTCGATTTGGGGAAATTTGTTGCTGAAAGCATCCCAGGGTTATTGCTGCAATGGGTTTCACATTTTCCAAAAAAATATCCACTAATTGAATGAACGTAAAATAAAAGAGACAATTCCTTGACGGAGAGATACCTACTTCAGCTTCAAACTACATAGAAAGTACGTGTAATAATGAAAAGAGGTTCAGTATGGAGTGTGCCGGATTTTGCTCTTAGTAAGTTGTCATTGTAGGTGACATATCATTCCTAGATGAAAGCATCACTTATAGTTTATGAAATTTTCAAATTACAACAAATTATGACATTATAATAAGTTAGTTCTTTCCCATCTGCACAGAGCTATCCAAAAGAACATTGAAAGGCATTACTCTTTCTCTTATAATACACAGATGGTGATAGTTCATCTAGGAAAAGAAAAAGAGAACAAGTCGCGGATCAAACTCGCTGAAAATAGTTCAGGTAGGAAAAGAAAAGAGAACAGCCAACTGTTCACACGTGTGATACTCGCAAAAGAGTTATTAAGAATGATACATAGCTGGTGATAGTACTTAACTTGCGAGCAAAGAACAGACATTTCTGAGTATGATTATATTCGTGTTGTTGTTGTTCTTATTTTTATTATTCTTTTGTTGTCTCTTAGAAAGAACAGGAACATATTTCAGGAAGTGCCTTGTGATGAAGTGTCTTTATGTTACCAAATAGACAACAACAAAACAAAAAAAGTTCTTTGTTATTTTGTGTGAAGAATCTTCTGGCGCTTCAACTTTTGTTACAGCTAACATTGTTTCATCTGATATTGGCAAGCTAAGGATAACTTTTGGGTTAAACTGGAGCAATCTTTGCTGCCCTGATTACTGGCTGTCACTCTTAGTGGTCTTTTAGGGGTAGATGTGCCAAATTCTACCAAGACATTATTGAAAATAATGAAAAAGTAACACCCATAAGATATACTAACAACAGTATCATATAGTGCAAAAAATTAAGGAAAAAACATAGAAAAATGAATCAGCTCGTACCTGTAAGAGCAAAACCATAAACCATACTAGAGGAAAGAAGAAGCGGGAGAAGTAGAGGTTTGATTTTGGCTATGGGAGTATCTGTAGAGGCTTTACTTATACTCTAAGTCTAGGCATTAATTGACATGTCTAACCCTATCCAAAAGAACATAAAAAAACCATTACTGTTTCCCTTATAATATGTAGATACTGATAGTTCAGGTTGGACAAGCAAAGGAGAACAAATTGTTCAAGCGTGAAACAAATTGTACACGGATGCGTTTGAGCTTTCTCTGTTTCTTCATGAAGGCAATTTTCTAAATGAGCACAGTTCATCTGCAGACCAACAATGGAAAAAGATAGAGAAGAAGTCATAAAATAAATTAGCATATCATGAGAACTTTATGAAAAAAAATTAAGTGTAAACACAGTGAATATTATTGAATATCCATCCCTCTGTTTTTCTTCAAACATGAATTTGGGACTCTCTTCTCTCGTAAATAGGATATGCTATTTTGGATGGCTATTGTATATTGTGTGGAGTTTTGTGTAACTTCTCAATGTAAGTGAGAAATTCTACTTAATTCAAAGGGAAAACAAAAAGAAGGCAGAATAAAAAACTTAATCCTCAGTATTGGTTAGTAGAAATGGTTTTGGAGATCCATTGATGTATGCTAAGCTCTTATAATACATAAATAGTCATAGTTCAGCTAGGAAGAGGAAAGGAGAACAAATTGTTCACGTGTGGAACTTGCGAGGTACAATCAATAGGTGGTCATTTCACTTAACATCAGTCGTTTAATGTGTGTGTTGAATTGAATTATATACGAGTCTACCTCTGCTTCAGAGCTGCTTCAGGAAGTATATCATCAATGGTGTTTAAGAACACAATCAAGAACAAGTGATGTTGCATCAACAAAAAGAAACAATTCTTAGTTATAGTATTTCCCACTAGATGAGTCAGTTTGCTCTGTGGATAAAGTGCATGGAATAACTTAGTTCGAGTAGAAAAAATGCTTTGTTACAACAAAGTTGCACCATTTAAGAAGATGAGTACCGATTGAGTAATATAATTAGAATTGCCGTTCAAACTTTTCCTAAAAGGAAAACAGATGCATGTTACTGACTTGTACTTCTATTCCCTGCTTTGGTGTAACAGTGTTTTGCTTGATAAACAGAAACTGTTAATTTTTTGGACACCAATTTTATATCTGACGACACTTAGTTGAGCTAGATTATTACGTTGTGATTGGCCCCTCGCAGCTGTTACCTCTCTACCTTAACACTTCTCCCTAGGTTAAAATAGTTTAGTGACCTGGAAATATTAAAAATTTCTGGCAAACAGGACTTACGCAGCCACTCAGCTGACTACTTGTGTTGTTATTTGTGCTTTTGTTTTTTAATACTTCCCTTGAGATGGAATTCACCAAGTTTTACTCTTAGTATGCTGTCATTTGACTTCTTCGTTACCTTCTGTACATTTTGGAACTCAGATTTCTCCAGCTGAGGAAACAAAGGAAACACTCTTCACTGACAAAGTGAGTTCCTCCACTTGTGCATTCTACATATTTACCTATATTCATCTACTTTTCTGTTCTTCATTCTGTCTACATTACTGTTTGTGCCTGGACTGTTAATTAAATAAAGTAGAATAAAAGAAACAAATTTTAAATTAATTTTTCCCGAAACACGCTGAACTACACTTTCCTATGAGCAGGTAATTCTGTTATACTATGATGAGTCCTCCCTCCATAGGGAAAAATTAGAAAGCACTATTTGTTAACAATTCGTTTTTTGCTTCTTTTTTCCCCTGTCCATCACGTGAGTACTTCCCGTCAGCCCAGTTTTTTGGCACAACAAAATGCTCTCTGATTTTAATCAATGTTTTTCATATGGGGAACTCTGGTTGTGTAATGTTTACATTGAAATATCAAATCAAAAATATTTTTGTCTTTGTTGTTATGTGACTTCCTTTCAAACTTAAGTTTCATTTGGTTGGTTTATTGAAACCAGAAAACCCCCAACTAGAGGCTTTGATTTTCTAAGTTTGCTTCTTCTTGATTATTCTACTAGGTAATATCAAGTGTTGCTTTTACTTTGTAAGTATCTGTGCTTTTACACAGGAATATGCTTAGTTTGTCATCATATCATACATCACCTAAGGCAACACGTAAACTAAGCTGTGGTGACATCTTTGACATTATTTCAATATCATTTTAGCGTGACCTAGGGATAAGGTTCACGTACATTCTACCCTCCACACACCCCATTTGTGCAACCACACTGAATATGTTACTACGCTGCAACTGTATGAAATTGTTAACTCTCAATAATGAGAACATAAACACTAAATGAAGCCACTTTGTTCTCATCTATATCTTCCTCAATCATTTCATTTGCTAATATTCCTTTGTCTCAACTTAACTTCTTTGAAGTATGATATCTCTATTTGGTGATTTACTGTCAACATAAAGATTGTTAGCTACTGAAAACTTTATGTTACATCTATATAACTTGTATATGTATAAGTATTAATTCTTACTTTAGTATTATTACATGTGAACCTTCTTTTGGATCTATACAACTTTATTTGCCTCCCTTGTCCCTTGCTAATGAAACATACATTTTGTTTGTGATGCTGATTTTGCCTAATATGGTCCTGTCAACACATGTTTGGATCAACTAATAATTGATTAAGTCCAGTAAGGACTGATTGGTCTTAATATACTTATTTTGAATGATAATTCCTCTCCGAGTTCAAACTTATTAATATGGTTCTGTCAACGCATGCTTGGATCAACTAATAATTGATCAAGTCCAGTAAGGAAGGACAGGTCCTATCAACACATGTTTGGATCAACTAATAATTGATTAAGTTCAGTAAGGACTGATTAGTCTTAATATACTTATTTTGAATGATAATTCCTCTCCGAGTTCAAACTTATTAATATCTAATGTAATTAACGTAGGTGTATTGTTGATGATCAAATTCAACACAACAATACTAATTGATCCACCTTATCCACAACGCGAGCAACTACAATCAAAATTTTACAACATTCCTTAGTATATTCTCACCGTCTTTTTTTTGACATATCAAATTAACATCACCAGCAATGTACCTTCTTTGACATTATCTGCAGGGTCACAGAGAACAAAGGAACACTTCATTTACTTTGAGGAGCACATCCAAATCTGGATCTCTCATCTCCGTTACAGTAGATGGAAGAAGTTATTCGAATTGCTAACATTGAACCCCAAGAAGACGTTAGTAAAAAATTCATTCATTATTTAATGTTAAAACTTACTACAAATACTTGCATTCATTCTTTTCATAATACATGAACAAACATTCTCAATTGAAGCAAAAATATCATTCCGAGTGCCCAAAAGAGATTCACGATAACGAAAAACATTCGGCATGCACCAAGCTACTTCTGTTGACTCATTTTAGAATCCAACGTCAACTTAACATCTTTACGTTCTCTTTAGCAGCAAGCTTCATGTATAACCTGCACATAACTTGTGTAATATATTTAAAACACCACCACGTCTTTTTTATTTTCACGTCAATATAAAACACGTCCGCGCCTTGCACGGACACTCACCCCCTAGTATATATACATATATTTCTTTTCTACTATCTATCTTACTTATTTCTTTTCTACTATTTCTTTTTTCTACTATATAGAAAGGTGAAGATCAAGGACGTCCAAGGGTAGAATAGTAAATTTAACCTGACAAGTACACACTCTCATGATTTTAGAACGCTCCATCTTACTCATTAGCACAGAATAGACGCAATATTTTCAACACGAGAATCAGTTCTTCCATTTCTCTTGCTCCAACTCCAACAGCAACGAATTTCAGGTATGTTCTTCTTTCAATCTTGCACCAATTTTCTTCCGGTTCATTTCGAACTTTTAAATTTTACCACTAAAATGTAGGTTTGACGTTGTTATTGTTCTGTCTAAATTCTCTACCCCAATTTTATGATTGAGGTAAAGATTTATGTTGTCCTCACACAAAGATGCGATTTTTTTTTATATAGTTGCAGATTTATATCTAAGAAATAATAAATTACTGACTGGTCCAGTAAATAGTTTATCGCAATAGGTTATCCATGACTTAACAAACATGGTAATGTGTATTCAATTATTTTGTAATCTAGCTCTATATTCTCTCTGTCTCACTCTTTCAAGATTCCTTCTATTGAAGATAGACAATTGTTAGGTCTATAGTGATTATGCCCTTTCGATCGAGATTTGAAATTGAATTGTTTGGATCGATGACTAATGGAATGAGGGCTCGTCTTCTTCTGTTTCAAACCTACACTCACAAAATTCTGTGAGCTCATTTATTTATTTTTTGATATTTTCCTTTTCGGTAAGAAAATTATTATGGTTAGTTCTCCCTAAGCTTTATTTTGCTATTAATTGCACAAAATAAGAATGTTAAGATGAAGTTTGATTATGTCCTAAACTTTTATGAAGTTTGTAATTGCTTTTTGATGCTCATAGGCCGTTTTAGATATAATAAATTTAATAATCGTGCTATTATCTTAACTTCTGGTAACATATAAATAATTTCAAGATAACATCAACCTGTTCATCCTTTAAAAACATCTGAATCAGGAGCTGGTGTCTTCATTTTATATTTGGTACGGTATTCGAATAATTTATCAAGAGCTTGACGCATGTAGAGAATGCCTAGGGGATCCACAGACTCTGGACAACAGATGCAGTTATTCTAGTAAGTACAATCTCTTTACTTTTCACCTTTATACTTAATTTGGTTTAAGAAAGGGAAAGATTGGAACCTATGGTGAAGGGTTGGTGATTCCAAGTATTGTGAAAGAAACAATGTTTAGCTAGACTTCTAGAAGATGGGGAGCCAATGCAAAACATGAGATTGTTGTTCCTTTATCATTATGTTGACAAAATTTCCGATTAAATAAAAAAAATGTTACCAAAAGGACGCATGAAATAGTCCATAAGTTGAAGTAGGTGCACAACTCATAAAAAGTCTGAAGGGAGGAAACTATGTTCAATTCAAAGAAATGGATTTGCTGATATCACATAATTAAATGTTCAACCAATTTACATAATACTAGAGACTAGTAAATGTAATAACTAAGCCAATAGGATCCTCATTTAGAGGTAAAATGGAAGCTGTTAATGAGTCCCAAACCCACGTTTTTATCCAAGTATTTGATAATGCTTAAAACTGGTGTTTATTCATGTCAATTAAGATCTCTGATTGAATAACTTATAAGAGAGTGAAGACAAGTGATCGATCATTCAAATGAGCTCTGTATTAAGGAAAGAGAGGAAAACGGATGTGACATTCAGCTTTCAAAAATTTAGCACTAGCATCTTCAAAAATTGCAAAGATAGCTAGAAAGAACAACTAATAAGAAATTTTGCACACTTGAAAAATTGTTCCTCATCCTTTATTTATTTTTTGTGCACTCACAAGGTTCTTATATATGTATAGAAGATCGGATTTATTGATAAAAAATATATCTTTTGTTAGGTTGTCTACATTTGATATACTTCTTGTATAACCAAAGTAGACACAACTTGTGTTCTAAGTTGAGCTTGTTTATGCATTTTGTGTTATTGCACACTTCTAAAAAGAAAGGTTAGATGCAAGGCTAATAAGTATTAAACTACATGAAATTTTCTCGAACTTGGGAAAATGAGATTGATGACTAAATTCGGTTGTTTAAAGACTGACTGGTGTGTTTTTTTATACCTAGCAAACAAAGAAGTGGAAAATATAGATTTTCCTCTTGGTGAGAAGTGGTTTACAAAGTTTGTCGGGATAAAAATTGAATTTTATGTACTTTACCTTACATTAAAAAAAAAAGTTTTTATGTAGTTGTTCTAGGATTTTGTTACTCATGGTCAAATGAATTGATGGGCTTATTTGGTAGCTTTTTCAGATATTCGTTACAGTTGTTATTCATTTATCCATTAGTGCCACCTCTATTTATTTATAGGTGATTGGTCATTAGGCAATTGATAAGTAGTTAGATTAATTCGAAAATCATGACTGTTTGTAGCCTAAATAACACACACACTGGTGGAAAACTTGAGGTTCTGTCGGTCTATATACCTAATTTGTCTCTAATTAAGCAGGTTCCTTGGTGTATCAAATAAGTGATATCTTACTGGTTGGTTCTGCCTAAAAAGAAAAAAAAAGTGGAAATATATATTTGTGAATTAATTTCGAATCACATTTTTATTTGAATTTTGTTTGTCAATATTCATTTAAGGTGTACCAGGAACCGATATAAAGTTGAAGGAGATCGGTCATGAACCATGTAGGCATTGAAGCAGCTGCCAATGATTTCAATGGTAACCGGTCTCTCTCAAGTCTGGATG</genome_strand>
        <mrna_strand>TTCTCCTCTGTGTTTCTGTTGGTTGTTTGCTGTATTGGGTTCTCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTCCAGCTGAGGAAACAAAGGAAACACTCTTCACTGACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACAGAGACCAAAGGAACACTTCATTTACTTTGAGGAGCACATCCAAATCTGGATCTCTCATCTCCGTTACAGTAGATGGAAGAAGTTATTCGAATTGCTAACATTGAACCCCAAGAAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTGAAGATCAAGGACGTCCAAGGGTAGAATAGTAAATTTAACCTGACAAGTACACACTCTCATGATTTTAGAACGCTCCATCTTACTCATTAGCACAGAATAGACGCAATATTTTCAACACGAGAATCAGTTCTTCCATTTCTCTTGCTCCAACTCCAACAGCAACGAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGTGTCTTCATTTTATATTTGGTACGGTATTCGAATAATTTATCAAGAGCTTGACGCATGTAGAGAATGCCTAGGGGATCCACAGACTCTGGACAACAGATGCAGTTATTCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACCAGGAACCGATATAAAGTTGAAGGAGATCGGTCATGAACCATGTAGGCATTGAAGCAGCTGCCAATGATTTCAATGGTAACCGGTCTCTCTCAAGTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606177" ref_strand="+" ref_description="SGN-E606177 [22114]">
      <seq>cgacatcatactcatttgctactccagaaaatcatgacatcttagatggaccattatcaaatcaccactgtagccactaagggaatgggcaagcaactatttgaaaaatacaaagcaacgaaatatttctggcaatggacaatatttgcaataccgctatgtgatttatgtgtccatggtgcaaagtacgaacagtggtagaaatacattttgttgtttagactctacacatttgtgaatgcaatattagacacaaaaatgacatcaaaattcacgttgttgggcccgtgcatagcacgggcaatacttatctagtatatatataaaaggaaagtcacttatcttttatatttgagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="125327" stop="127057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125627" g_stop="125662" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125663" i_stop="125752" i_length="90">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.898" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125753" g_stop="125803" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="87" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125804" i_stop="126338" i_length="535">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126339" g_stop="126472" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="221" r_length="134" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126473" i_stop="126634" i_length="162">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.929" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126635" g_stop="126739" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="324" r_length="103" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E606177" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125627" e_stop="125662"/>
          <exon e_start="125753" e_stop="125803"/>
          <exon e_start="126339" e_stop="126472"/>
          <exon e_start="126635" e_stop="126739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATCATACTCATTTGCTACTCCAGAAAATCTTGGTCTTTTCTTGTTGTCTGCATCATTCTTTAACACCAAACTAATTCAATATTGTATGGTTTGCTCACATAGCTTGTTTTTATTTATTTCAGACATCTTAGATGGACCATTGTCAAATCGCTACTTTAGCTACTAAGGGAATGGTAATGATTGTCTCCTCTTTAATTGATTCATGCACATGCTTGTTTTCATCAACTGTTCATGTGATGCTAAAAGGAACTTAATGTGTGATCAATTATTTTTGGACATTGTTTGCGTTAATTTCCGACATCTCCATATAGTTGTTGCTTGTCAGTATTGGCTTATCAAGAAACAAAATAAGGAATTGGTAATTGGTTTATTCTTAAATGATGAAAGGATCCTACATTGGTTGTGAGAATCATATTAAATTTTCGATGTATCCTTAGATTGTAGTGACGTTTTTTGACCTTTACTGACTTTGTGCCCTCCTCGAGTCCCCTCTAAAGGAGTATAACTTGACTATTGGGTATAGTATTCATAAGTAAATTTTTTCCCCGCTCCTTGATTTGAGTTAATAAGTTGTCTCGCTTTCTGTCTCTCTCTTTCACACAAATGTTCTTTTTCTAGCATAGTATTTTAAAAATGTCCTTTTAATTTTTTATCGGTTTAATGCTTCTATTTCAAAATTTTTAATCTCTTATTCCCTTTTTGGAATAGGACAAGCAACTATTTGAAAAATACAAAGCAACGAAATATTTCTGGCAATGGACAATATTTGCAATACTGTTATGTGATTTATGTTTCCATGGTGCAAAGTACGAACAGTGGTAATAATACATTTTGTTGATCATGTATCATAGGATGGTGGATAGGAGCTAATGAGTCAATGAGTCATACGCGTGGGTTTGATTTTGCAAGTATATTAAAGGAAGTATTAGAAAAGTAACTATAATAGACGAGTGTGATATAATATCATTTTATGTTTGTCATCTTATAAATTTATGGTTGTTTAGAGTCTACGCATATGTGAATGCAAAATCAGACACAAATAAATGACATCAAAATTCATGTTGTTAGGCCCGTGCATAGCACGAGCAATACTCATCTTGTCTATATAT</genome_strand>
        <mrna_strand>CGACATCATACTCATTTGCTACTCCAGAAAATCATG..........................................................................................ACATCTTAGATGGACCATTATCAAATCACCACTGTAGCCACTAAGGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCAACTATTTGAAAAATACAAAGCAACGAAATATTTCTGGCAATGGACAATATTTGCAATACCGCTATGTGATTTATGTGTCCATGGTGCAAAGTACGAACAGTGGTAGAAATACATTTTGTTGTTTAG..................................................................................................................................................................ACTCTACACATTTGTGAATGCAATATTAGACAC-AA-AAATGACATCAAAATTCACGTTGTTGGGCCCGTGCATAGCACGGGCAATACTTATCTAGTATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469897" ref_strand="+" ref_description="SGN-E469897 [cSTB-15-D15]">
      <seq>aaaaggcgtggcatgtgcagacatatatccgatgtttacgattcaattttatatacccatttcccaaatcctctctttttaatgaaccccaacaagataaatcagtagagaaacactttttctatttgaaaatctttgattagttttcatggggttcttcaattactagtctttaatcgatttctgggatcttttcgggttgtttccactcaaagatctgatctttttcgtctagtgttgatcaagttttcagtgaagatggctggatcagatgagaattacccaggagtgattaggccatcaaatcttcaagggggattgaggcctggtgttgggggaaaagtgaatggagggttggggcaaaataggagagcattgagcacaatcaataggaatgtaatgggagctcccccattacactgtgctgttgttcacaagagaaatgacattactgaaaacaaatccaatgctgctactaacaagatccctcctgttccgattcatcgtccaatcacaaggaagttagctgcgcaaatcgcaagcaaacagcatcaaccagcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="135509" stop="137114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135809" g_stop="136058" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136059" i_stop="136198" i_length="140">
            <donor d_prob="0.548" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136199" g_stop="136258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="313" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136259" i_stop="136352" i_length="94">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136353" g_stop="136493" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="455" r_length="142" r_score="0.887"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136494" i_stop="136576" i_length="83">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136577" g_stop="136639" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="518" r_length="63" r_score="0.889"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136640" i_stop="136767" i_length="128">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136768" g_stop="136814" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="565" r_length="47" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-E469897" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135809" e_stop="136058"/>
          <exon e_start="136199" e_stop="136258"/>
          <exon e_start="136353" e_stop="136493"/>
          <exon e_start="136577" e_stop="136639"/>
          <exon e_start="136768" e_stop="136814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTGTGGCATGTGTAGACATATATCTGATGTTCATGATTAAATTTTATATACCCCTTTCCCAAATCCGCTCTTTTTAATGAATCCCAACAAAATAAATCAGTAGAGGAACACTTCTT-T-TTTGAAAATCTTTGATTAG-TTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATCTTTTCGGGTTGTTTCCACTCAAAGATCTGATCTTTTTCATCTAGTGTTGATCAAGTTTTCAGGTTGGTATTTGGCATTCCATGCAATGAAGTTTTTGTTATGTCTAGCTTAATTCTTTATTATTTTCTTGGTTTAGATTGATGGGTCATTCAATTTTTCAATTGGGTTTTTGATTTTGTTTTTGTTTTGTGGATTGGTGCAGTGAAGATGGTTGGATCAGATGAGAATTAGCCAGGAGTGATTAGGCCTTCAAATCTTCAAGGTGAGTTTAGTTTCTTTTGTGTTATTGAATTAGTATTTGTTTTGATTGTTTTGTGTTTGTTGATTTGACTGTGATAAACCCTAATTATATTTAGGAGGATTGAGGCCTGGTGTTGGAGGAAAAGTGACCGGATGGTTGGG-CAAAATAGGAGGGCACTAAGCAAAATCAATAGAAATGTAATGGGAGGTCCCCCATTACACACTGCTGTTGTTCCCAAGAGAAATGACATTACTGAGTAATAACTTCTTAAACCTGAGAACTCAATTGAATTTATCTTATTTCTCTACATGTTTTAACTTGCTTTTCATTTGTTTATAGAAACAAAGTCAATGCTGCTACTAACAAGATCCCTCCTGTTCTGATTCACCGTCCGGTTACAAGGTATGACTCTATTCTCTTGGTTGTATGATATTAAATAGGCGTTTGTCCATGCGAAGCTGAATCCTAAAAATCCTTGCACCTGATCTTGATTCATTGTTTATTTGTCTGTGGGGTTATTGACATTTCAGGAAGTTAGCTGCGCAAATCTCAAGCCAACAGCGTCATCCAGCAGTCG</genome_strand>
        <mrna_strand>AAAAGGCGTGGCATGTGCAGACATATATCCGATGTTTACGATTCAATTTTATATACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCCAACAAGATAAATCAGTAGAGAAACACTTTTTCTATTTGAAAATCTTTGATTAGTTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATCTTTTCGGGTTGTTTCCACTCAAAGATCTGATCTTTTTCGTCTAGTGTTGATCAAGTTTTCAG............................................................................................................................................TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCATCAAATCTTCAAG..............................................................................................GGGGATTGAGGCCTGGTGTTGGGGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGAGCATTGAGCACAATCAATAGGAATGTAATGGGAGCTCCCCCATTACACTGTGCTGTTGTTCACAAGAGAAATGACATTACTGA...................................................................................AAACAAATCCAATGCTGCTACTAACAAGATCCCTCCTGTTCCGATTCATCGTCCAATCACAAG................................................................................................................................GAAGTTAGCTGCGCAAATCGCAAGCAAACAGCATCAACCAGCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>286</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="98" PGL_stop="4614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101" e_stop="188"/>
            <exon e_start="363" e_stop="485"/>
            <exon e_start="1375" e_stop="1455"/>
            <exon e_start="1549" e_stop="1637"/>
            <exon e_start="1726" e_stop="1800"/>
            <exon e_start="2309" e_stop="2370"/>
            <exon e_start="2460" e_stop="2528"/>
            <exon e_start="3502" e_stop="3687"/>
            <exon e_start="4071" e_stop="4455"/>
            <exon e_start="4601" e_stop="4614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101" e_stop="188" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="363" e_stop="485" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1375" e_stop="1455" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1549" e_stop="1637" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1726" e_stop="1800" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2309" e_stop="2370" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2460" e_stop="2528" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3502" e_stop="3687" e_length="186"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4071" e_stop="4455" e_length="385"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4456" i_stop="4600" i_length="145"/>
          </intron>
          <exon e_serial="10" e_score="0.500">
            <gDNA_exon_boundary e_start="4601" e_stop="4614" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="375" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="375" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="451" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="452" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="457" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="461" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1420" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1561" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588418" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1739" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1742" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591045" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1755" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3521" stop="3687"/>
              <exon start="4071" stop="4339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3645" stop="3687"/>
              <exon start="4071" stop="4408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4097" stop="4446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4104" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4114" stop="4455"/>
              <exon start="4601" stop="4614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4122" stop="4408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4127" stop="4351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4140" stop="4417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="4418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4210" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG : ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG : GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG : AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC : TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG : GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG : AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG : GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG : GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAAA : AGGAATATGAGACA</gDNA_template>
            <first_frame> G  V  N  E  E  T  K  P  K  K  R  A  L  L  S  W  R  R  I  I  L  I  L  S  L  F  L  Y  Q   : D  G  S  V  P  E  S  G  E  A  K  G  *  D  T  Y  *  C  E  *  D  S  D  Y  *  S  G  K  D  A  K  L  Y  H  L  C  Y  D  L  A  S   : G  E  R  I  R  G  D  R  V  Q  G  N  G  Q  G  N  Q  Q  D  C  D  N  C  G  I  D  Q   : E  E  N  C  W  S  S  P  S  N  V  Y  Y  I  H  *  Y  N  *  Y  M  G  T  P  *  R  R  S  P  T  :  S  R  D  H  Q  A  C  I  H  D  Y  N  Y  P  R  Q  K  G  A  G  *  E  C  C  G  :  V  P  T  T  I  A  S  R  P  G  E  S  V  N  R  F  *  L  *  W  R :   R  I  S  *  W  R  T  K  R  P  R  W  S  R  K  G  K  V  Q  R  L  S  R :   K  W  I  Y  A  G  *  V  *  *  W  W  V  *  S  Q  S  E  L  W  *  G  *  G  S  R  Q  R  S  *  L  P  W  P  R  K  G  R  V  Q  W  S  T  G  C  P  A  R  W  W  L  L  Q  S  R  S  S  H  A  G  T  R :   P  W  P  W  K  G  N  S  R  *  G  T  W  I  Q  I  *  W  A  D  P  R  R  W  C  L  N  G  Q  A  *  R  I  Q  R  L  C  A  M  S  A  C  S  M  F  Y  V  F  H  S  L  V  T  P  C  *  Q  *  V  I  Y  L  *  S  E  *  T  N  Y  R  F  Q  D  R  P  Y  V  V  M  F  S  F  L  C  F  S  *  Y  L  L  S  L  F  S  A  *  L  G  G  W  S  S  V  I  S  L  V  S  S  T  F  F  D  L  S  L  F  V  E  M  F  S  V  D  L  V  R  K  :  R  N  M  R   </first_frame>
            <second_frame>  A  *  T  K  K  R  S  R  R  R  G  L  F  F  R  G  E  E  *  Y  *  S  Y  P  Y  S  Y  T  K  :  M  D  R  Y  Q  K  V  E  K  P  R  V  E  T  P  I  D  A  N  E  I  R  I  T  S  Q  G  R  M  R  S  Y  I  T  Y  A  M  T  L  L  Q  :  E  K  E  S  E  E  I  V  F  K  A  M  G  R  A  I  N  K  T  V  T  I  V  E  L  I  K  :  R  R  I  V  G  L  H  Q  V  T  S  I  T  S  T  D  I  T  D  T  W  E  P  L  E  E  G  L  L  P :   L  E  T  T  R  H  V  S  M  I  T  I  T  L  A  K  K  E  L  D  K  N  A  V  G :   Y  Q  P  P  L  P  A  D  Q  V  K  V  S  T  D  F  D  Y  D  G   : E  G  S  P  S  G  G  R  R  G  R  G  G  R  G  R  G  R  S  R  G  F  P   : G  N  G  F  M  P  A  E  Y  D  D  G  G  Y  D  R  N  R  S  Y  G  R  G  R  G  R  G  R  G  R  S  S  R  G  R  G  R  G  G  Y  N  G  P  Q  D  V  Q  Q  D  G  G  F  Y  N  Q  E  A  P  M  Q  G  R   : G  R  G  R  G  R  G  T  R  G  R  G  R  G  F  R  S  N  G  P  I  Q  G  G  G  A  *  M  V  K  L  E  E  Y  R  D  Y  V  L  *  V  P  A  P  C  S  M  F  F  I  R  *  L  L  R  V  N  S  R  L  S  I  C  N  Q  S  R  L  I  I  D  F  R  T  A  R  M  W  *  C  F  L  F  F  V  F  H  D  I  F  Y  L  Y  S  L  L  D  *  V  V  G  Q  V  *  F  R  *  *  A  A  H  S  L  I  C  L  C  L  L  K  C  S  V  L  I  L  F  V  K :   G  I  *  D  </second_frame>
            <third_frame>   R  K  R  R  N  E  A  E  E  E  G  S  S  F  V  E  K  N  N  T  N  L  I  L  I  L  I  P  R :   W  I  G  T  R  K  W  R  S  Q  G  L  R  H  L  L  M  R  M  R  F  G  L  L  V  R  E  G  C  E  A  I  S  L  M  L  *  P  C  F  R :   R  K  N  Q  R  R  S  C  S  R  Q  W  A  G  Q  S  T  R  L  *  Q  L  W  N  *  S  R :   G  E  L  L  V  F  T  K  *  R  L  L  H  P  L  I  *  L  I  H  G  N  P  L  K  K  V  S  Y   : L  S  R  P  P  G  M  Y  P  *  L  Q  L  P  S  P  K  R  S  W  I  R  M  L  W   : G  T  N  H  H  C  Q  Q  T  R  *  K  C  Q  Q  I  L  T  M  M  E  :  K  D  L  L  V  E  D  E  E  A  A  V  V  E  E  G  E  G  P  E  A  F  Q  :  E  M  D  L  C  R  L  S  M  M  M  V  G  M  I  A  I  G  A  M  V  G  V  G  V  E  A  E  V  V  A  P  V  A  A  E  G  E  G  T  M  V  H  R  M  S  S  K  M  V  A  S  T  I  K  K  L  P  C  R  D  E  :  A  V  A  V  E  G  E  L  A  V  G  D  V  D  S  D  L  M  G  R  S  K  E  V  V  L  K  W  S  S  L  K  N  T  E  I  M  C  Y  E  C  L  L  H  V  L  C  F  S  F  V  S  Y  S  V  L  T  V  G  Y  L  S  V  I  R  V  D  *  L  *  I  S  G  P  P  V  C  G  D  V  F  F  S  L  F  F  M  I  S  S  I  F  I  L  C  L  I  R  W  L  V  K  C  N  F  V  S  E  Q  H  I  L  *  F  V  F  V  C  *  N  V  Q  C  *  S  C  S  *   : K  E  Y  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="165" stop="188"/>
                    <exon start="363" stop="485"/>
                    <exon start="1375" stop="1455"/>
                    <exon start="1549" stop="1637"/>
                    <exon start="1726" stop="1800"/>
                    <exon start="2309" stop="2370"/>
                    <exon start="2460" stop="2528"/>
                    <exon start="3502" stop="3687"/>
                    <exon start="4071" stop="4150"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPYSYTKMDRYQKVEKPRVETPIDANEIRITSQGRMRSYITYAMTLLQEKESEEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSITSTDITDTWEPLEEGLLPLETTRHVSMITITLAKKELDKNAVGYQPPLPADQVKVSTDFDYDGEGSPSGGRRGRGGRGRGRSRGFPGNGFMPAEYDDGGYDRNRSYGRGRGRGRGRSSRGRGRGGYNGPQDVQQDGGFYNQEAPMQGRGRGRGRGTRGRGRGFRSNGPIQGGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98" e_stop="188"/>
            <exon e_start="363" e_stop="485"/>
            <exon e_start="1375" e_stop="1455"/>
            <exon e_start="1549" e_stop="1637"/>
            <exon e_start="1726" e_stop="1800"/>
            <exon e_start="2309" e_stop="3687"/>
            <exon e_start="4071" e_stop="4470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98" e_stop="188" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="363" e_stop="485" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1375" e_stop="1455" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1549" e_stop="1637" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1726" e_stop="1800" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2309" e_stop="3687" e_length="1379"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383"/>
          </intron>
          <exon e_serial="7" e_score="0.968">
            <gDNA_exon_boundary e_start="4071" e_stop="4470" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="3687"/>
              <exon start="4071" stop="4442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="452" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1555" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3494" stop="3687"/>
              <exon start="4071" stop="4470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561914" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3521" stop="3687"/>
              <exon start="4071" stop="4339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3645" stop="3687"/>
              <exon start="4071" stop="4408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4097" stop="4446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4104" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4122" stop="4408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4127" stop="4351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4140" stop="4417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="4418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4210" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG : ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG : GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG : AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC : TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG : GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG : GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAAATTTGCCTTGTTTTTA</gDNA_template>
            <first_frame> *  G  V  N  E  E  T  K  P  K  K  R  A  L  L  S  W  R  R  I  I  L  I  L  S  L  F  L  Y  Q   : D  G  S  V  P  E  S  G  E  A  K  G  *  D  T  Y  *  C  E  *  D  S  D  Y  *  S  G  K  D  A  K  L  Y  H  L  C  Y  D  L  A  S   : G  E  R  I  R  G  D  R  V  Q  G  N  G  Q  G  N  Q  Q  D  C  D  N  C  G  I  D  Q   : E  E  N  C  W  S  S  P  S  N  V  Y  Y  I  H  *  Y  N  *  Y  M  G  T  P  *  R  R  S  P  T  :  S  R  D  H  Q  A  C  I  H  D  Y  N  Y  P  R  Q  K  G  A  G  *  E  C  C  G  :  V  P  T  T  I  A  S  R  P  G  E  S  V  N  R  F  *  L  *  W  R  F  V  F  L  *  I  Y  Q  W  M  Q  M  L  V  V  C  E  T  P  S  Y  Y  L  L  I  S  D  Y  L  E  G  S  P  S  G  G  R  R  G  R  G  G  R  G  R  G  R  S  R  G  F  P  G  R  N  S  F  E  T  F  R  *  R  P  *  *  *  C  K  I  *  R  Y  N  S  A  N  T  C  Y  *  M  F  *  C  F  R  E  F  A  Y  S  K  C  M  G  L  I  G  V  A  L  Y  L  F  N  I  K  L  E  Q  K  S  F  Y  C  Y  L  S  N  Y  *  F  V  K  K  Q  N  *  C  H  L  Y  M  *  V  C  S  L  P  L  C  K  T  Q  T  E  E  V  C  I  D  V  L  V  K  R  F  I  A  G  S  C  P  G  K  G  I  H  F  *  G  D  K  S  P  S  S  T  H  S  R  V  E  V  R  W  I  H  P  I  C  L  S  Q  G  S  Y  R  S  Q  H  C  P  D  S  R  S  N  S  V  N  T  A  N  I  C  F  *  S  I  F  L  N  K  *  R  V  L  S  F  G  K  A  I  C  Q  P  F  S  Q  Q  H  L  K  C  L  C  V  S  I  L  L  *  G  R  F  *  S  S  E  V  I  C  S  E  L  Q  F  C  K  L  E  Q  F  V  L  N  A  *  M  K  Y  R  L  L  *  D  V  G  S  D  K  C  F  L  K  V  L  H  A  Y  F  I  F  *  I  P  V  T  C  A  L  S  H  *  R  L  N  D  M  Y  S  L  V  F  L  H  H  I  F  N  *  Q  P  Y  V  E  N  D  E  R  *  *  G  C  S  I  S  M  C  N  W  Q  T  S  Q  S  A  S  V  S  G  Y  C  S  *  H  D  M  F  A  V  I  L  S  R  K  W  I  Y  A  G  *  V  *  *  W  W  V  *  S  Q  S  E  L  W  *  G  *  G  S  R  Q  R  S  *  L  P  W  P  R  K  G  R  V  Q  W  S  T  G  C  P  A  R  W  W  L  L  Q  S  R  S  S  H  A  G  T  R :   P  W  P  W  K  G  N  S  R  *  G  T  W  I  Q  I  *  W  A  D  P  R  R  W  C  L  N  G  Q  A  *  R  I  Q  R  L  C  A  M  S  A  C  S  M  F  Y  V  F  H  S  L  V  T  P  C  *  Q  *  V  I  Y  L  *  S  E  *  T  N  Y  R  F  Q  D  R  P  Y  V  V  M  F  S  F  L  C  F  S  *  Y  L  L  S  L  F  S  A  *  L  G  G  W  S  S  V  I  S  L  V  S  S  T  F  F  D  L  S  L  F  V  E  M  F  S  V  D  L  V  R  K  F  A  L  F  L </first_frame>
            <second_frame>  R  A  *  T  K  K  R  S  R  R  R  G  L  F  F  R  G  E  E  *  Y  *  S  Y  P  Y  S  Y  T  K  :  M  D  R  Y  Q  K  V  E  K  P  R  V  E  T  P  I  D  A  N  E  I  R  I  T  S  Q  G  R  M  R  S  Y  I  T  Y  A  M  T  L  L  Q  :  E  K  E  S  E  E  I  V  F  K  A  M  G  R  A  I  N  K  T  V  T  I  V  E  L  I  K  :  R  R  I  V  G  L  H  Q  V  T  S  I  T  S  T  D  I  T  D  T  W  E  P  L  E  E  G  L  L  P :   L  E  T  T  R  H  V  S  M  I  T  I  T  L  A  K  K  E  L  D  K  N  A  V  G :   Y  Q  P  P  L  P  A  D  Q  V  K  V  S  T  D  F  D  Y  D  G  G  L  F  F  Y  K  F  I  N  G  C  K  C  W  *  Y  V  K  H  H  R  I  I  Y  *  Y  L  I  I  *  K  D  L  L  V  E  D  E  E  A  A  V  V  E  E  G  E  G  P  E  A  F  Q  V  G  I  L  L  K  L  L  D  K  G  P  D  D  D  V  R  F  R  D  I  I  Q  L  T  P  A  I  R  C  F  D  A  F  G  S  L  L  I  L  S  A  W  G  S  L  E  L  P  S  I  C  S  I  L  S  W  S  R  N  P  F  T  V  T  F  L  I  I  N  L  L  K  S  R  T  D  V  T  F  I  C  K  F  V  L  F  L  Y  V  K  P  R  Q  R  K  Y  A  L  M  S  W  *  R  D  S  L  L  G  H  V  L  V  K  G  F  I  F  R  E  I  N  H  Q  V  R  L  T  A  G  S  K  L  G  G  F  I  Q  Y  A  L  V  K  A  H  T  A  P  N  T  V  L  I  Q  D  L  I  Q  L  T  L  Q  I  Y  V  F  E  V  F  F  *  I  N  D  E  C  *  A  L  G  K  L  F  V  N  P  S  L  S  N  I  *  S  A  C  V  C  P  F  C  Y  E  V  D  F  D  R  V  R  *  Y  A  Q  N  Y  N  F  V  N  L  N  N  S  F  *  M  L  E  *  N  I  G  F  F  E  M  W  D  Q  I  N  V  S  *  R  F  F  M  H  T  S  F  S  E  Y  Q  L  H  V  L  *  V  T  D  V  *  M  T  C  T  H  S  F  F  F  T  I  F  S  I  D  N  R  M  S  R  M  M  K  D  N  R  D  A  L  F  R  C  V  I  G  R  L  H  R  V  Q  V  *  V  V  I  V  H  D  M  T  C  L  L  L  F  Y  P  G  N  G  F  M  P  A  E  Y  D  D  G  G  Y  D  R  N  R  S  Y  G  R  G  R  G  R  G  R  G  R  S  S  R  G  R  G  R  G  G  Y  N  G  P  Q  D  V  Q  Q  D  G  G  F  Y  N  Q  E  A  P  M  Q  G  R   : G  R  G  R  G  R  G  T  R  G  R  G  R  G  F  R  S  N  G  P  I  Q  G  G  G  A  *  M  V  K  L  E  E  Y  R  D  Y  V  L  *  V  P  A  P  C  S  M  F  F  I  R  *  L  L  R  V  N  S  R  L  S  I  C  N  Q  S  R  L  I  I  D  F  R  T  A  R  M  W  *  C  F  L  F  F  V  F  H  D  I  F  Y  L  Y  S  L  L  D  *  V  V  G  Q  V  *  F  R  *  *  A  A  H  S  L  I  C  L  C  L  L  K  C  S  V  L  I  L  F  V  N  L  P  C  F   </second_frame>
            <third_frame>   G  R  K  R  R  N  E  A  E  E  E  G  S  S  F  V  E  K  N  N  T  N  L  I  L  I  L  I  P  R :   W  I  G  T  R  K  W  R  S  Q  G  L  R  H  L  L  M  R  M  R  F  G  L  L  V  R  E  G  C  E  A  I  S  L  M  L  *  P  C  F  R :   R  K  N  Q  R  R  S  C  S  R  Q  W  A  G  Q  S  T  R  L  *  Q  L  W  N  *  S  R :   G  E  L  L  V  F  T  K  *  R  L  L  H  P  L  I  *  L  I  H  G  N  P  L  K  K  V  S  Y   : L  S  R  P  P  G  M  Y  P  *  L  Q  L  P  S  P  K  R  S  W  I  R  M  L  W   : G  T  N  H  H  C  Q  Q  T  R  *  K  C  Q  Q  I  L  T  M  M  E  V  C  F  F  I  N  L  S  M  D  A  N  A  G  S  M  *  N  T  I  V  L  F  T  N  I  *  L  F  R  R  I  S  *  W  R  T  K  R  P  R  W  S  R  K  G  K  V  Q  R  L  S  R  *  E  F  F  *  N  F  *  I  K  A  L  M  M  M  *  D  L  E  I  *  F  S  *  H  L  L  L  D  V  L  M  L  S  G  V  C  L  F  *  V  H  G  A  H  W  S  C  P  L  S  V  Q  Y  *  V  G  A  E  I  L  L  L  L  P  F  *  L  L  I  C  *  K  A  E  L  M  S  P  L  Y  V  S  L  F  S  S  F  M  *  N  P  D  R  G  S  M  H  *  C  P  G  K  E  I  H  C  W  V  M  S  W  *  R  D  S  F  L  G  R  *  I  T  K  F  D  S  Q  Q  G  R  S  *  V  D  S  S  N  M  P  *  S  R  L  I  P  L  P  T  L  S  *  F  K  I  *  F  S  *  H  C  K  Y  M  F  L  K  Y  F  S  E  *  M  T  S  A  K  L  W  E  S  Y  L  S  T  L  L  S  A  T  S  K  V  L  V  C  V  H  F  A  M  R  *  I  L  I  E  *  G  N  M  L  R  I  T  I  L  *  T  *  T  I  R  S  E  C  L  N  E  I  *  A  S  L  R  C  G  I  R  *  M  F  L  K  G  S  S  C  I  L  H  F  L  N  T  S  Y  M  C  F  K  S  L  T  F  E  *  H  V  L  T  R  F  S  S  P  Y  F  Q  L  T  T  V  C  R  E  *  *  K  I  I  G  M  L  Y  F  D  V  *  L  A  D  F  T  E  C  K  C  K  W  L  L  F  M  T  *  H  V  C  C  Y  F  I  Q  E  M  D  L  C  R  L  S  M  M  M  V  G  M  I  A  I  G  A  M  V  G  V  G  V  E  A  E  V  V  A  P  V  A  A  E  G  E  G  T  M  V  H  R  M  S  S  K  M  V  A  S  T  I  K  K  L  P  C  R  D  E  :  A  V  A  V  E  G  E  L  A  V  G  D  V  D  S  D  L  M  G  R  S  K  E  V  V  L  K  W  S  S  L  K  N  T  E  I  M  C  Y  E  C  L  L  H  V  L  C  F  S  F  V  S  Y  S  V  L  T  V  G  Y  L  S  V  I  R  V  D  *  L  *  I  S  G  P  P  V  C  G  D  V  F  F  S  L  F  F  M  I  S  S  I  F  I  L  C  L  I  R  W  L  V  K  C  N  F  V  S  E  Q  H  I  L  *  F  V  F  V  C  *  N  V  Q  C  *  S  C  S  *  I  C  L  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="165" stop="188"/>
                    <exon start="363" stop="485"/>
                    <exon start="1375" stop="1455"/>
                    <exon start="1549" stop="1637"/>
                    <exon start="1726" stop="1800"/>
                    <exon start="2309" stop="2414"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPYSYTKMDRYQKVEKPRVETPIDANEIRITSQGRMRSYITYAMTLLQEKESEEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSITSTDITDTWEPLEEGLLPLETTRHVSMITITLAKKELDKNAVGYQPPLPADQVKVSTDFDYDGGLFFYKFINGCKCW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3478" stop="3687"/>
                    <exon start="4071" stop="4274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVCCYFIQEMDLCRLSMMMVGMIAIGAMVGVGVEAEVVAPVAAEGEGTMVHRMSSKMVASTIKKLPCRDEAVAVEGELAVGDVDSDLMGRSKEVVLKWSSLKNTEIMCYECLLHVLCFSFVSYSVLTVGYLSVIRVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2460" stop="2837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLVEDEEAAVVEEGEGPEAFQVGILLKLLDKGPDDDVRFRDIIQLTPAIRCFDAFGSLLILSAWGSLELPSICSILSWSRNPFTVTFLIINLLKSRTDVTFICKFVLFLYVKPRQRKYALMSW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2838" stop="3041"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDSLLGHVLVKGFIFREINHQVRLTAGSKLGGFIQYALVKAHTAPNTVLIQDLIQLTLQIYVFEVFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110" e_stop="188"/>
            <exon e_start="363" e_stop="485"/>
            <exon e_start="1375" e_stop="1455"/>
            <exon e_start="1549" e_stop="1637"/>
            <exon e_start="1719" e_stop="1800"/>
            <exon e_start="2309" e_stop="2386"/>
            <exon e_start="2460" e_stop="2528"/>
            <exon e_start="3502" e_stop="3687"/>
            <exon e_start="4071" e_stop="4455"/>
            <exon e_start="4601" e_stop="4614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="0.975"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="0.841"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.744"/>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="0.913"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110" e_stop="188" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="363" e_stop="485" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="1375" e_stop="1455" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1549" e_stop="1637" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1638" i_stop="1718" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.841">
            <gDNA_exon_boundary e_start="1719" e_stop="1800" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="0.744">
            <gDNA_exon_boundary e_start="2309" e_stop="2386" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2387" i_stop="2459" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="0.913">
            <gDNA_exon_boundary e_start="2460" e_stop="2528" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="3502" e_stop="3687" e_length="186"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4071" e_stop="4455" e_length="385"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4456" i_stop="4600" i_length="145"/>
          </intron>
          <exon e_serial="10" e_score="0.500">
            <gDNA_exon_boundary e_start="4601" e_stop="4614" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1719" stop="1800"/>
              <exon start="2309" stop="2386"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3521" stop="3687"/>
              <exon start="4071" stop="4339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3645" stop="3687"/>
              <exon start="4071" stop="4408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4097" stop="4446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4104" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4114" stop="4455"/>
              <exon start="4601" stop="4614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4122" stop="4408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4127" stop="4351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4140" stop="4417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="4418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4210" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG : ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG : GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG : AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC : GTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG : GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAA : AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG : GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG : GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAAA : AGGAATATGAGACA</gDNA_template>
            <first_frame> E  E  T  K  P  K  K  R  A  L  L  S  W  R  R  I  I  L  I  L  S  L  F  L  Y  Q   : D  G  S  V  P  E  S  G  E  A  K  G  *  D  T  Y  *  C  E  *  D  S  D  Y  *  S  G  K  D  A  K  L  Y  H  L  C  Y  D  L  A  S   : G  E  R  I  R  G  D  R  V  Q  G  N  G  Q  G  N  Q  Q  D  C  D  N  C  G  I  D  Q   : E  E  N  C  W  S  S  P  S  N  V  Y  Y  I  H  *  Y  N  *  Y  M  G  T  P  *  R  R  S  P  T  :  V  A  V  S  R  P  P  G  M  Y  P  *  L  Q  L  P  S  P  K  R  S  W  I  R  M  L  W   : G  T  N  H  H  C  Q  Q  T  R  *  K  C  Q  Q  I  L  T  M  M  E  V  C  F  F  I   : K  G  S  P  S  G  G  R  R  G  R  G  G  R  G  R  G  R  S  R  G  F  P   : G  N  G  F  M  P  A  E  Y  D  D  G  G  Y  D  R  N  R  S  Y  G  R  G  R  G  R  G  R  G  R  S  S  R  G  R  G  R  G  G  Y  N  G  P  Q  D  V  Q  Q  D  G  G  F  Y  N  Q  E  A  P  M  Q  G  R   : G  R  G  R  G  R  G  T  R  G  R  G  R  G  F  R  S  N  G  P  I  Q  G  G  G  A  *  M  V  K  L  E  E  Y  R  D  Y  V  L  *  V  P  A  P  C  S  M  F  F  I  R  *  L  L  R  V  N  S  R  L  S  I  C  N  Q  S  R  L  I  I  D  F  R  T  A  R  M  W  *  C  F  L  F  F  V  F  H  D  I  F  Y  L  Y  S  L  L  D  *  V  V  G  Q  V  *  F  R  *  *  A  A  H  S  L  I  C  L  C  L  L  K  C  S  V  L  I  L  F  V  K :   G  I  *  D  </first_frame>
            <second_frame>  K  K  R  S  R  R  R  G  L  F  F  R  G  E  E  *  Y  *  S  Y  P  Y  S  Y  T  K  :  M  D  R  Y  Q  K  V  E  K  P  R  V  E  T  P  I  D  A  N  E  I  R  I  T  S  Q  G  R  M  R  S  Y  I  T  Y  A  M  T  L  L  Q  :  E  K  E  S  E  E  I  V  F  K  A  M  G  R  A  I  N  K  T  V  T  I  V  E  L  I  K  :  R  R  I  V  G  L  H  Q  V  T  S  I  T  S  T  D  I  T  D  T  W  E  P  L  E  E  G  L  L  P :   L  Q  S  R  D  H  Q  A  C  I  H  D  Y  N  Y  P  R  Q  K  G  A  G  *  E  C  C  G  :  V  P  T  T  I  A  S  R  P  G  E  S  V  N  R  F  *  L  *  W  R  F  V  F  L  *  :  K  D  L  L  V  E  D  E  E  A  A  V  V  E  E  G  E  G  P  E  A  F  Q  :  E  M  D  L  C  R  L  S  M  M  M  V  G  M  I  A  I  G  A  M  V  G  V  G  V  E  A  E  V  V  A  P  V  A  A  E  G  E  G  T  M  V  H  R  M  S  S  K  M  V  A  S  T  I  K  K  L  P  C  R  D  E  :  A  V  A  V  E  G  E  L  A  V  G  D  V  D  S  D  L  M  G  R  S  K  E  V  V  L  K  W  S  S  L  K  N  T  E  I  M  C  Y  E  C  L  L  H  V  L  C  F  S  F  V  S  Y  S  V  L  T  V  G  Y  L  S  V  I  R  V  D  *  L  *  I  S  G  P  P  V  C  G  D  V  F  F  S  L  F  F  M  I  S  S  I  F  I  L  C  L  I  R  W  L  V  K  C  N  F  V  S  E  Q  H  I  L  *  F  V  F  V  C  *  N  V  Q  C  *  S  C  S  *   : K  E  Y  E  T </second_frame>
            <third_frame>   R  N  E  A  E  E  E  G  S  S  F  V  E  K  N  N  T  N  L  I  L  I  L  I  P  R :   W  I  G  T  R  K  W  R  S  Q  G  L  R  H  L  L  M  R  M  R  F  G  L  L  V  R  E  G  C  E  A  I  S  L  M  L  *  P  C  F  R :   R  K  N  Q  R  R  S  C  S  R  Q  W  A  G  Q  S  T  R  L  *  Q  L  W  N  *  S  R :   G  E  L  L  V  F  T  K  *  R  L  L  H  P  L  I  *  L  I  H  G  N  P  L  K  K  V  S  Y   : R  C  S  L  E  T  T  R  H  V  S  M  I  T  I  T  L  A  K  K  E  L  D  K  N  A  V  G :   Y  Q  P  P  L  P  A  D  Q  V  K  V  S  T  D  F  D  Y  D  G  G  L  F  F  Y  K :   R  I  S  *  W  R  T  K  R  P  R  W  S  R  K  G  K  V  Q  R  L  S  R :   K  W  I  Y  A  G  *  V  *  *  W  W  V  *  S  Q  S  E  L  W  *  G  *  G  S  R  Q  R  S  *  L  P  W  P  R  K  G  R  V  Q  W  S  T  G  C  P  A  R  W  W  L  L  Q  S  R  S  S  H  A  G  T  R :   P  W  P  W  K  G  N  S  R  *  G  T  W  I  Q  I  *  W  A  D  P  R  R  W  C  L  N  G  Q  A  *  R  I  Q  R  L  C  A  M  S  A  C  S  M  F  Y  V  F  H  S  L  V  T  P  C  *  Q  *  V  I  Y  L  *  S  E  *  T  N  Y  R  F  Q  D  R  P  Y  V  V  M  F  S  F  L  C  F  S  *  Y  L  L  S  L  F  S  A  *  L  G  G  W  S  S  V  I  S  L  V  S  S  T  F  F  D  L  S  L  F  V  E  M  F  S  V  D  L  V  R  K  :  R  N  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2460" stop="2528"/>
                    <exon start="3502" stop="3687"/>
                    <exon start="4071" stop="4274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLVEDEEAAVVEEGEGPEAFQEMDLCRLSMMMVGMIAIGAMVGVGVEAEVVAPVAAEGEGTMVHRMSSKMVASTIKKLPCRDEAVAVEGELAVGDVDSDLMGRSKEVVLKWSSLKNTEIMCYECLLHVLCFSFVSYSVLTVGYLSVIRVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="165" stop="188"/>
                    <exon start="363" stop="485"/>
                    <exon start="1375" stop="1455"/>
                    <exon start="1549" stop="1637"/>
                    <exon start="1719" stop="1788"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPYSYTKMDRYQKVEKPRVETPIDANEIRITSQGRMRSYITYAMTLLQEKESEEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSITSTDITDTWEPLEEGLLPLQSRDHQACIHDYNYPRQKGAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2341" stop="2386"/>
                    <exon start="2460" stop="2528"/>
                    <exon start="3502" stop="3687"/>
                    <exon start="4071" stop="4150"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCQQILTMMEVCFFIKGSPSGGRRGRGGRGRGRSRGFPGNGFMPAEYDDGGYDRNRSYGRGRGRGRGRSSRGRGRGGYNGPQDVQQDGGFYNQEAPMQGRGRGRGRGTRGRGRGFRSNGPIQGGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="110" e_stop="188"/>
            <exon e_start="363" e_stop="485"/>
            <exon e_start="1375" e_stop="1455"/>
            <exon e_start="1549" e_stop="1637"/>
            <exon e_start="1726" e_stop="1800"/>
            <exon e_start="2309" e_stop="2370"/>
            <exon e_start="2463" e_stop="2470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.933" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110" e_stop="188" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="363" e_stop="485" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1375" e_stop="1455" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1549" e_stop="1637" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1726" e_stop="1800" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="2309" e_stop="2370" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.933">
            <gDNA_intron_boundary i_start="2371" i_stop="2462" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2463" e_stop="2470" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2463" stop="2470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2463" stop="2470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="452" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG : ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG : GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG : AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC : TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG : GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG : GATCTCCT</gDNA_template>
            <first_frame> E  E  T  K  P  K  K  R  A  L  L  S  W  R  R  I  I  L  I  L  S  L  F  L  Y  Q   : D  G  S  V  P  E  S  G  E  A  K  G  *  D  T  Y  *  C  E  *  D  S  D  Y  *  S  G  K  D  A  K  L  Y  H  L  C  Y  D  L  A  S   : G  E  R  I  R  G  D  R  V  Q  G  N  G  Q  G  N  Q  Q  D  C  D  N  C  G  I  D  Q   : E  E  N  C  W  S  S  P  S  N  V  Y  Y  I  H  *  Y  N  *  Y  M  G  T  P  *  R  R  S  P  T  :  S  R  D  H  Q  A  C  I  H  D  Y  N  Y  P  R  Q  K  G  A  G  *  E  C  C  G  :  V  P  T  T  I  A  S  R  P  G  E  S  V  N  R  F  *  L  *  W  R :   I  S  </first_frame>
            <second_frame>  K  K  R  S  R  R  R  G  L  F  F  R  G  E  E  *  Y  *  S  Y  P  Y  S  Y  T  K  :  M  D  R  Y  Q  K  V  E  K  P  R  V  E  T  P  I  D  A  N  E  I  R  I  T  S  Q  G  R  M  R  S  Y  I  T  Y  A  M  T  L  L  Q  :  E  K  E  S  E  E  I  V  F  K  A  M  G  R  A  I  N  K  T  V  T  I  V  E  L  I  K  :  R  R  I  V  G  L  H  Q  V  T  S  I  T  S  T  D  I  T  D  T  W  E  P  L  E  E  G  L  L  P :   L  E  T  T  R  H  V  S  M  I  T  I  T  L  A  K  K  E  L  D  K  N  A  V  G :   Y  Q  P  P  L  P  A  D  Q  V  K  V  S  T  D  F  D  Y  D  G   : G  S  P </second_frame>
            <third_frame>   R  N  E  A  E  E  E  G  S  S  F  V  E  K  N  N  T  N  L  I  L  I  L  I  P  R :   W  I  G  T  R  K  W  R  S  Q  G  L  R  H  L  L  M  R  M  R  F  G  L  L  V  R  E  G  C  E  A  I  S  L  M  L  *  P  C  F  R :   R  K  N  Q  R  R  S  C  S  R  Q  W  A  G  Q  S  T  R  L  *  Q  L  W  N  *  S  R :   G  E  L  L  V  F  T  K  *  R  L  L  H  P  L  I  *  L  I  H  G  N  P  L  K  K  V  S  Y   : L  S  R  P  P  G  M  Y  P  *  L  Q  L  P  S  P  K  R  S  W  I  R  M  L  W   : G  T  N  H  H  C  Q  Q  T  R  *  K  C  Q  Q  I  L  T  M  M  E  :  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="165" stop="188"/>
                    <exon start="363" stop="485"/>
                    <exon start="1375" stop="1455"/>
                    <exon start="1549" stop="1637"/>
                    <exon start="1726" stop="1800"/>
                    <exon start="2309" stop="2370"/>
                    <exon start="2463" stop="2470"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPYSYTKMDRYQKVEKPRVETPIDANEIRITSQGRMRSYITYAMTLLQEKESEEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSITSTDITDTWEPLEEGLLPLETTRHVSMITITLAKKELDKNAVGYQPPLPADQVKVSTDFDYDGGSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4430" PGL_stop="4099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4430" e_stop="4099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="4430" e_stop="4099" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4430" stop="4099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCAACAAACAAAGACAAATCAAAGAATGTGCTGCTCACTAACGAAATTACACTTGACCAACCACCTAATCAAGCAGAGAATAAAGATAGAAGATATCATGAAAAACAAAGAAAAGAAAACATCACCACATACGGGCGGTCCTGAAATCTATAATTAGTCTACTCTGATTACAGATAGATAACCTACTGTTAACACGGAGTAACTAACGAATGAAAAACATAGAACATGGAGCAGGCACTCATAGCACATAATCTCTGTATTCTTCAAGCTTGACCATTTAAGCACCACCTCCTTGGATCGGCCCATTAGATCTGAATCCACGTCCCCTA</gDNA_template>
            <first_frame> I  S  T  N  K  D  K  S  K  N  V  L  L  T  N  E  I  T  L  D  Q  P  P  N  Q  A  E  N  K  D  R  R  Y  H  E  K  Q  R  K  E  N  I  T  T  Y  G  R  S  *  N  L  *  L  V  Y  S  D  Y  R  *  I  T  Y  C  *  H  G  V  T  N  E  *  K  T  *  N  M  E  Q  A  L  I  A  H  N  L  C  I  L  Q  A  *  P  F  K  H  H  L  L  G  S  A  H  *  I  *  I  H  V  P   </first_frame>
            <second_frame>  F  Q  Q  T  K  T  N  Q  R  M  C  C  S  L  T  K  L  H  L  T  N  H  L  I  K  Q  R  I  K  I  E  D  I  M  K  N  K  E  K  K  T  S  P  H  T  G  G  P  E  I  Y  N  *  S  T  L  I  T  D  R  *  P  T  V  N  T  E  *  L  T  N  E  K  H  R  T  W  S  R  H  S  *  H  I  I  S  V  F  F  K  L  D  H  L  S  T  T  S  L  D  R  P  I  R  S  E  S  T  S  P  </second_frame>
            <third_frame>   F  N  K  Q  R  Q  I  K  E  C  A  A  H  *  R  N  Y  T  *  P  T  T  *  S  S  R  E  *  R  *  K  I  S  *  K  T  K  K  R  K  H  H  H  I  R  A  V  L  K  S  I  I  S  L  L  *  L  Q  I  D  N  L  L  L  T  R  S  N  *  R  M  K  N  I  E  H  G  A  G  T  H  S  T  *  S  L  Y  S  S  S  L  T  I  *  A  P  P  P  W  I  G  P  L  D  L  N  P  R  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8809" PGL_stop="11577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8809" e_stop="9023"/>
            <exon e_start="9596" e_stop="9917"/>
            <exon e_start="10820" e_stop="11577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8809" e_stop="9023" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9596" e_stop="9917" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10820" e_stop="11577" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8809" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8836" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="10977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8836" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="10890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8838" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="10965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8841" stop="9023"/>
              <exon start="9596" stop="9666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8844" stop="9023"/>
              <exon start="9596" stop="9845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8844" stop="9023"/>
              <exon start="9596" stop="9800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8853" stop="9023"/>
              <exon start="9596" stop="9804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8865" stop="9023"/>
              <exon start="9596" stop="9885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8874" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8874" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8874" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8884" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8915" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8963" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="10924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8989" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9661" stop="9910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9680" stop="9917"/>
              <exon start="10820" stop="11139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9777" stop="9917"/>
              <exon start="10820" stop="11147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9841" stop="9917"/>
              <exon start="10820" stop="11475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621554" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9872" stop="9917"/>
              <exon start="10820" stop="11147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10871" stop="11491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10933" stop="11554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10933" stop="11552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11034" stop="11577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11186" stop="11577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366616" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACCATTATTTCTACAACACATACCATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG : GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG : GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTTGCTTCAAA</gDNA_template>
            <first_frame> *  T  I  I  S  T  T  H  T  I  S  S  S  S  I  F  L  L  Y  F  S  *  E  N  G  Q  N  W  H  F  N  I  R  F  H  I  C  F  L  Q  H  F  G  *  Y  C  K  C  F  L  C  F  W  M  D  E  C  S  C  Y  F  L  W  R  I  *  C  F  W  H  N  G :   G  C  L  W  L  W  E  L  V  L  N  R  L  W  Y  K  H  C  C  I  K  Y  C  I  V  Q  *  W  S  I  M  W  S  M  L  Q  N  Y  V  *  L  *  S  R  F  *  M  V  H  K  G  N  I  Y  Y  N  Y  S  H  *  F  L  S  T  K  F  C  T  S  *  Q  *  W  W  M  V  Q  P  T  K  A  T  F  *  H  G  S  T  C  L  G  K  N  W  Y  L  Q  R  W  H  C  S  R  H  V  P  K  :  D  S  L  C  E  K  R  W  S  *  I  Y  N  K  W  K  G  L  F  *  A  I  N  D  K  *  C  R  R  G  W  I  N  S  I  S  T  N  *  R  I  K  N  Q  L  D  D  N  G  *  K  L  G  G  Q  L  A  I  K  C  I  S  *  W  T  I  F  V  I  *  G  H  N  I  R  W  C  H  *  N  I  L  K  C  C  F  I  Q  L  A  I  W  T  N  I  F  K  L  Y  *  L  L  I  L  K  K  K  K  T  K  V  E  K  F  G  I  *  S  L  *  V  Y  I  Y  T  C  D  R  Q  R  R  A  Y  C  F  T  E  S  S  P  P  P  F  L  C  L  L  L  F  D  I  R  N  I  L  A  R  L  L  M  K  *  V  H  E  L  *  S  E  G  A  G  N  I  N  I  F  E  I  Y  C  V  Y  V  V  *  C  E  I  C  I  F  I  F  Y  I  S  K  E  Y  N  K  T  F  C  L  *  C  K  C  L  *  V  H  Q  T  S  I  L  L  I  F  I  F  I  F  A  L  Y  C  K  L  V  L  *  *  G  H  V  I  H  I  L  Y  Q  M  F  L  C  F  A  S   </first_frame>
            <second_frame>  R  P  L  F  L  Q  H  I  P  F  L  L  P  Q  F  F  F  Y  I  F  L  K  K  M  A  K  I  G  I  L  T  L  G  F  I  F  V  F  C  N  I  L  V  S  T  A  N  A  F  S  A  S  G  W  M  S  A  H  A  T  F  Y  G  G  S  D  A  S  G  T  M   : G  G  A  C  G  Y  G  N  L  Y  S  T  G  Y  G  T  N  T  A  A  L  S  T  A  L  F  N  D  G  A  S  C  G  Q  C  Y  K  I  M  C  D  Y  N  Q  D  S  K  W  C  I  K  G  T  S  I  T  I  T  A  T  N  F  C  P  P  N  F  A  L  P  S  N  N  G  G  W  C  N  P  P  R  P  H  F  D  M  A  Q  P  A  W  E  K  I  G  I  Y  R  G  G  I  V  P  V  M  Y  Q  R :   I  P  C  V  K  K  G  G  V  R  F  T  I  N  G  R  D  Y  F  E  L  L  M  I  S  N  V  G  G  A  G  S  I  Q  S  V  Q  I  K  G  S  R  T  N  W  M  T  M  A  R  N  W  G  A  N  W  Q  S  N  A  F  L  N  G  Q  S  L  S  F  K  V  T  T  S  D  G  V  T  K  T  F  L  N  V  A  S  S  N  W  R  F  G  Q  T  Y  S  S  S  I  N  F  *  F  *  K  K  K  K  Q  K  S  K  S  S  G  F  E  V  Y  E  F  I  F  I  R  V  I  G  S  G  V  L  T  V  L  L  K  A  A  R  P  P  S  S  V  F  F  Y  S  I  F  E  I  Y  W  L  D  Y  *  *  S  K  F  M  N  S  S  P  K  V  L  E  T  *  I  Y  L  K  F  I  V  C  M  *  C  S  V  K  F  A  Y  L  F  F  I  Y  Q  K  N  I  I  R  P  F  V  F  D  A  N  V  C  R  C  I  K  H  L  Y  F  *  F  L  F  L  F  L  P  S  I  V  S  L  Y  C  N  K  V  M  L  Y  I  Y  C  I  K  C  S  Y  V  L  L  Q  </second_frame>
            <third_frame>   D  H  Y  F  Y  N  T  Y  H  F  F  F  L  N  F  S  S  I  F  F  L  R  K  W  P  K  L  A  F  *  H  *  V  S  Y  L  F  F  A  T  F  W  L  V  L  Q  M  L  S  L  L  L  D  G  *  V  L  M  L  L  F  M  E  D  L  M  L  L  A  Q  W  :  G  V  L  V  A  M  G  T  C  T  Q  Q  V  M  V  Q  T  L  L  H  *  V  L  H  C  S  M  M  E  H  H  V  V  N  V  T  K  L  C  V  I  I  I  K  I  L  N  G  A  *  R  E  H  L  L  Q  L  Q  P  L  I  F  V  H  Q  I  L  H  F  L  A  I  M  V  D  G  A  T  H  Q  G  H  I  L  T  W  L  N  L  L  G  K  K  L  V  S  T  E  V  A  L  F  P  S  C  T  K   : G  F  L  V  *  K  K  V  E  L  D  L  Q  *  M  E  G  T  I  L  S  Y  *  *  *  V  M  *  E  G  L  D  Q  F  N  Q  Y  K  L  K  D  Q  E  P  I  G  *  Q  W  L  E  I  G  G  P  I  G  N  Q  M  H  F  L  M  D  N  L  C  H  L  R  S  Q  H  Q  M  V  S  L  K  H  S  *  M  L  L  H  P  I  G  D  L  D  K  H  I  Q  A  L  L  T  S  N  F  K  K  K  K  N  K  S  R  K  V  R  D  L  K  F  M  S  L  Y  L  Y  V  *  *  A  A  A  C  L  L  F  Y  *  K  Q  P  A  P  L  P  L  S  S  F  I  R  Y  S  K  Y  T  G  S  I  I  D  E  V  S  S  *  T  L  V  R  R  C  W  K  H  K  Y  I  *  N  L  L  C  V  C  S  V  V  *  N  L  H  I  Y  F  L  Y  I  K  R  I  *  *  D  L  L  S  L  M  Q  M  F  V  G  A  S  N  I  Y  T  S  N  F  Y  F  Y  F  C  P  L  L  *  A  C  I  V  I  R  S  C  Y  T  Y  I  V  S  N  V  P  M  F  C  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8810" stop="9023"/>
                    <exon start="9596" stop="9917"/>
                    <exon start="10820" stop="11126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPLFLQHIPFLLPQFFFYIFLKKMAKIGILTLGFIFVFCNILVSTANAFSASGWMSAHATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGASCGQCYKIMCDYNQDSKWCIKGTSITITATNFCPPNFALPSNNGGWCNPPRPHFDMAQPAWEKIGIYRGGIVPVMYQRIPCVKKGGVRFTINGRDYFELLMISNVGGAGSIQSVQIKGSRTNWMTMARNWGANWQSNAFLNGQSLSFKVTTSDGVTKTFLNVASSNWRFGQTYSSSINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="11577" PGL_stop="10856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11577" e_stop="10856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="11577" e_stop="10856" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11577" stop="10856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAAGCAAAACATAGGAACATTTGATACAATATATGTATAACATGACCTTATTACAATACAAGCTTACAATAGAGGGCAAAAATAAAAATAAAAATTAGAAGTATAGATGTTTGATGCACCTACAAACATTTGCATCAAAGACAAAAGGTCTTATTATATTCTTTTGATATATAAAAAATAAATATGCAAATTTCACACTACACTACATACACACAATAAATTTCAAATATATTTATGTTTCCAGCACCTTCGGACTAGAGTTCATGAACTTACTTCATCAATAATCGAGCCAGTATATTTCGAATATCGAATAAAAGAAGACAGAGGAAGGGGGGCGGGCTGCTTTCAGTAAAACAGTAAGCACGCCGCTGCCTATCACACGTATAAATATAAACTCATAAACTTCAAATCCCGAACTTTTCGACTTTTGTTTTTTTTTTTTTTAAAATTAGAAGTTAATAGAGCTTGAATATGTTTGTCCAAATCGCCAATTGGATGAAGCAACATTTAAGAATGTTTTAGTGACACCATCTGATGTTGTGACCTTAAATGACAAAGATTGTCCATTAAGAAATGCATTTGATTGCCAATTGGCCCCCCAATTTCTAGCCATTGTCATCCAATTGGTTCTTGATCCTTTAATTTGTACTGATTGAATTGATCCAGCCCCTCCTACATTACTTATCATTAATAGCTCAAAATAGTCCCTTCCATTTATT</gDNA_template>
            <first_frame> F  E  A  K  H  R  N  I  *  Y  N  I  C  I  T  *  P  Y  Y  N  T  S  L  Q  *  R  A  K  I  K  I  K  I  R  S  I  D  V  *  C  T  Y  K  H  L  H  Q  R  Q  K  V  L  L  Y  S  F  D  I  *  K  I  N  M  Q  I  S  H  Y  T  T  Y  T  Q  *  I  S  N  I  F  M  F  P  A  P  S  D  *  S  S  *  T  Y  F  I  N  N  R  A  S  I  F  R  I  S  N  K  R  R  Q  R  K  G  G  G  L  L  S  V  K  Q  *  A  R  R  C  L  S  H  V  *  I  *  T  H  K  L  Q  I  P  N  F  S  T  F  V  F  F  F  F  K  I  R  S  *  *  S  L  N  M  F  V  Q  I  A  N  W  M  K  Q  H  L  R  M  F  *  *  H  H  L  M  L  *  P  *  M  T  K  I  V  H  *  E  M  H  L  I  A  N  W  P  P  N  F  *  P  L  S  S  N  W  F  L  I  L  *  F  V  L  I  E  L  I  Q  P  L  L  H  Y  L  S  L  I  A  Q  N  S  P  F  H  L   </first_frame>
            <second_frame>  L  K  Q  N  I  G  T  F  D  T  I  Y  V  *  H  D  L  I  T  I  Q  A  Y  N  R  G  Q  K  *  K  *  K  L  E  V  *  M  F  D  A  P  T  N  I  C  I  K  D  K  R  S  Y  Y  I  L  L  I  Y  K  K  *  I  C  K  F  H  T  T  L  H  T  H  N  K  F  Q  I  Y  L  C  F  Q  H  L  R  T  R  V  H  E  L  T  S  S  I  I  E  P  V  Y  F  E  Y  R  I  K  E  D  R  G  R  G  A  G  C  F  Q  *  N  S  K  H  A  A  A  Y  H  T  Y  K  Y  K  L  I  N  F  K  S  R  T  F  R  L  L  F  F  F  F  L  K  L  E  V  N  R  A  *  I  C  L  S  K  S  P  I  G  *  S  N  I  *  E  C  F  S  D  T  I  *  C  C  D  L  K  *  Q  R  L  S  I  K  K  C  I  *  L  P  I  G  P  P  I  S  S  H  C  H  P  I  G  S  *  S  F  N  L  Y  *  L  N  *  S  S  P  S  Y  I  T  Y  H  *  *  L  K  I  V  P  S  I  Y  </second_frame>
            <third_frame>   *  S  K  T  *  E  H  L  I  Q  Y  M  Y  N  M  T  L  L  Q  Y  K  L  T  I  E  G  K  N  K  N  K  N  *  K  Y  R  C  L  M  H  L  Q  T  F  A  S  K  T  K  G  L  I  I  F  F  *  Y  I  K  N  K  Y  A  N  F  T  L  H  Y  I  H  T  I  N  F  K  Y  I  Y  V  S  S  T  F  G  L  E  F  M  N  L  L  H  Q  *  S  S  Q  Y  I  S  N  I  E  *  K  K  T  E  E  G  G  R  A  A  F  S  K  T  V  S  T  P  L  P  I  T  R  I  N  I  N  S  *  T  S  N  P  E  L  F  D  F  C  F  F  F  F  *  N  *  K  L  I  E  L  E  Y  V  C  P  N  R  Q  L  D  E  A  T  F  K  N  V  L  V  T  P  S  D  V  V  T  L  N  D  K  D  C  P  L  R  N  A  F  D  C  Q  L  A  P  Q  F  L  A  I  V  I  Q  L  V  L  D  P  L  I  C  T  D  *  I  D  P  A  P  P  T  L  L  I  I  N  S  S  K  *  S  L  P  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11122" stop="10919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLIELEYVCPNRQLDEATFKNVLVTPSDVVTLNDKDCPLRNAFDCQLAPQFLAIVIQLVLDPLICTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="14711" PGL_stop="16511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14711" e_stop="14953"/>
            <exon e_start="15434" e_stop="15622"/>
            <exon e_start="16373" e_stop="16511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14711" e_stop="14953" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14954" i_stop="15433" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15434" e_stop="15622" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15623" i_stop="16372" i_length="750"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="16373" e_stop="16511" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14711" stop="14953"/>
              <exon start="15434" stop="15622"/>
              <exon start="16373" stop="16511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14712" stop="14953"/>
              <exon start="15434" stop="15622"/>
              <exon start="16373" stop="16423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGG : GGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTT : TCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATTTCTATAGCCAGTGAAACAAGACAATTACCTGGCCCAAATTTTAACATCTCTCAATTGCAACAAAGCTTCTCCCAAAGAGGCCTTTCTT</gDNA_template>
            <first_frame> I  N  H  K  Q  Y  T  I  S  F  *  F  L  I  I  L  M  A  L  Q  S  V  F  V  I  T  F  V  L  F  S  C  V  N  A  L  S  S  N  Y  Y  D  Q  T  C  P  D  A  E  S  T  I  R  Q  V  V  K  K  A  M  S  N  D  K  T  V  P  A  A  L  L  R  M  H  F  H  D  C  F  V  R  :  G  C  D  G  S  V  L  L  N  S  T  K  N  N  Q  A  E  K  D  G  P  P  N  I  S  L  H  S  F  Y  V  I  D  V  A  K  K  Q  I  E  N  M  C  P  G  V  V  S  C  A  D  I  L  A  L  A  A  R  D  A  V  T  L  :  S  G  G  P  Y  W  A  V  P  K  G  R  K  D  G  R  I  S  I  A  S  E  T  R  Q  L  P  G  P  N  F  N  I  S  Q  L  Q  Q  S  F  S  Q  R  G  L  S  </first_frame>
            <second_frame>  L  T  T  N  N  I  L  *  A  F  N  F  *  *  F  *  W  H  Y  K  V  F  L  *  L  L  L  C  Y  F  H  V  *  M  H  L  A  P  I  T  M  I  K  H  V  Q  M  Q  N  Q  L  L  D  K  L  *  K  K  Q  C  Q  M  I  K  Q  F  Q  L  L  F  *  G  C  T  F  M  I  V  L  S  G :   V  V  M  A  L  C  C  *  I  Q  Q  K  T  T  K  R  R  K  M  D  L  Q  I  F  H  Y  I  L  F  M  L  L  T  L  L  R  N  K  L  K  I  C  V  L  A  L  S  L  V  L  I  F  *  L  L  Q  L  E  M  L  S  L  F :   L  E  G  L  I  G  P  Y  Q  K  V  E  K  M  E  E  F  L  *  P  V  K  Q  D  N  Y  L  A  Q  I  L  T  S  L  N  C  N  K  A  S  P  K  E  A  F  L </second_frame>
            <third_frame>   *  P  Q  T  I  Y  Y  K  L  L  I  F  D  N  F  D  G  I  T  K  C  F  C  N  Y  F  C  V  I  F  M  C  K  C  T  *  L  Q  L  L  *  S  N  M  S  R  C  R  I  N  Y  *  T  S  C  K  K  S  N  V  K  *  *  N  S  S  S  C  S  F  E  D  A  L  S  *  L  F  C  Q   : G  L  *  W  L  C  A  V  E  F  N  K  K  Q  P  S  G  E  R  W  T  S  K  Y  F  I  T  F  F  L  C  Y  *  R  C  *  E  T  N  *  K  Y  V  S  W  R  C  L  L  C  *  Y  F  S  S  C  S  *  R  C  C  H  S   : F  W  R  A  L  L  G  R  T  K  R  *  K  R  W  K  N  F  Y  S  Q  *  N  K  T  I  T  W  P  K  F  *  H  L  S  I  A  T  K  L  L  P  K  R  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14744" stop="14953"/>
                    <exon start="15434" stop="15622"/>
                    <exon start="16373" stop="16510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIILMALQSVFVITFVLFSCVNALSSNYYDQTCPDAESTIRQVVKKAMSNDKTVPAALLRMHFHDCFVRGCDGSVLLNSTKNNQAEKDGPPNISLHSFYVIDVAKKQIENMCPGVVSCADILALAARDAVTLSGGPYWAVPKGRKDGRISIASETRQLPGPNFNISQLQQSFSQRGLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="17236" PGL_stop="16445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17236" e_stop="16445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17236" e_stop="16445" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17236" stop="16445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17235" stop="16698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTTTGCTATCGAAGTTTTCTATTCTGTTTCGGAATGATGAACAATGAGAAAATCCAAGAGTGTGTCCTCCTGAATATTAAAAAAAAAAAAAAGTTAGAAAAAAGTAATTTGATAATTTTATTATAAGTTCAGTAATTATACGTGAAATTAATTCGTAAATTATACCTGAAAGTGCAACCAAATCATCTAAAGAAAGGCCTCTTTGGGAGAAGCTTTGTTGCAATTGAGAGATGTTAAAATTTGGGCCAGGTAATTG</gDNA_template>
            <first_frame> V  Y  F  C  I  C  T  I  K  S  I  Q  I  L  K  L  I  P  S  Q  T  P  L  H  P  *  K  H  T  F  D  I  L  L  P  T  Q  M  N  K  K  S  N  Q  T  K  N  Y  K  L  F  S  C  N  K  T  F  L  *  *  K  R  T  P  C  S  D  Q  A  S  I  N  K  S  T  I  M  P  Y  F  L  T  R  T  A  D  T  A  H  L  N  H  *  I  S  K  S  F  K  E  L  V  L  G  I  G  K  I  *  N  K  C  F  G  S  *  I  C  E  *  S  *  I  R  R  K  K  T  F  L  L  Q  Y  *  F  I  I  R  V  I  E  *  K  C  R  S  I  H  S  S  P  C  I  F  C  C  V  F  N  R  A  Y  F  L  *  I  S  C  K  R  C  V  *  *  W  I  D  V  V  F  A  I  E  V  F  Y  S  V  S  E  *  *  T  M  R  K  S  K  S  V  S  S  *  I  L  K  K  K  K  S  *  K  K  V  I  *  *  F  Y  Y  K  F  S  N  Y  T  *  N  *  F  V  N  Y  T  *  K  C  N  Q  I  I  *  R  K  A  S  L  G  E  A  L  L  Q  L  R  D  V  K  I  W  A  R  *  L </first_frame>
            <second_frame>  F  I  F  A  Y  V  Q  S  N  Q  Y  K  S  S  N  *  S  L  H  K  L  L  S  I  L  R  N  T  H  L  T  Y  Y  Y  P  H  K  *  I  K  N  Q  T  K  P  K  I  T  S  Y  F  R  A  I  K  H  S  S  N  K  K  G  L  H  A  Q  T  K  L  Q  L  T  N  L  Q  S  C  L  I  S  *  P  E  P  L  I  L  L  I  L  I  I  E  S  A  K  A  L  K  N  S  C  W  E  L  A  K  F  K  T  S  V  L  V  L  E  F  V  S  K  V  E  S  E  E  K  R  P  F  F  C  N  I  N  L  *  Y  A  L  S  N  K  N  V  V  V  S  I  V  A  P  A  F  F  V  V  F  L  T  G  H  I  F  F  K  L  A  A  N  D  A  S  S  D  G  S  T  S  F  L  L  S  K  F  S  I  L  F  R  N  D  E  Q  *  E  N  P  R  V  C  P  P  E  Y  *  K  K  K  K  V  R  K  K  *  F  D  N  F  I  I  S  S  V  I  I  R  E  I  N  S  *  I  I  P  E  S  A  T  K  S  S  K  E  R  P  L  W  E  K  L  C  C  N  *  E  M  L  K  F  G  P  G  N   </second_frame>
            <third_frame>   L  F  L  H  M  Y  N  Q  I  N  T  N  P  Q  I  N  P  F  T  N  S  S  P  S  L  E  T  H  I  *  H  I  I  T  H  T  N  E  *  K  I  K  P  N  Q  K  L  Q  V  I  F  V  Q  *  N  I  P  L  I  K  K  D  S  M  L  R  P  S  F  N  *  Q  I  Y  N  H  A  L  F  L  D  Q  N  R  *  Y  C  S  S  *  S  L  N  Q  Q  K  L  *  R  T  R  V  G  N  W  Q  N  L  K  Q  V  F  W  F  L  N  L  *  V  K  L  N  Q  K  K  K  D  L  S  F  A  I  L  I  Y  N  T  R  Y  R  I  K  M  S  *  Y  P  *  *  P  L  H  F  L  L  C  F  *  Q  G  I  F  S  L  N  *  L  Q  T  M  R  L  V  M  D  R  R  R  F  C  Y  R  S  F  L  F  C  F  G  M  M  N  N  E  K  I  Q  E  C  V  L  L  N  I  K  K  K  K  K  L  E  K  S  N  L  I  I  L  L  *  V  Q  *  L  Y  V  K  L  I  R  K  L  Y  L  K  V  Q  P  N  H  L  K  K  G  L  F  G  R  S  F  V  A  I  E  R  C  *  N  L  G  Q  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="16523" PGL_stop="17242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16523" e_stop="16535"/>
            <exon e_start="16632" e_stop="17242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16523" e_stop="16535" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16536" i_stop="16631" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="16632" e_stop="17242" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16523" stop="16535"/>
              <exon start="16632" stop="17242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCACTTTCAG : GAGGACACACTCTTGGATTTTCTCATTGTTCATCATTCCGAAACAGAATAGAAAACTTCGATAGCAAAAACGACGTCGATCCATCACTAGACGCATCGTTTGCAGCTAATTTAAAGAAAATATGCCCTGTTAAAAACACAACAAAAAATGCAGGGGCTACTATGGATACTACGACATTTTTATTCGATAACGCGTATTATAAATTAATATTGCAAAAGAAAGGTCTTTTTTCTTCTGATTCAACTTTACTCACAAATTCAAGAACCAAAACACTTGTTTTAAATTTTGCCAATTCCCAACACGAGTTCTTTAAAGCTTTTGCTGATTCAATGATTAAGATGAGCAGTATCAGCGGTTCTGGTCAAGAAATAAGGCATGATTGTAGATTTGTTAATTGAAGCTTGGTCTGAGCATGGAGTCCTTTTTTATTAGAGGAATGTTTTATTGCACGAAAATAACTTGTAATTTTTGGTTTGGTTTGATTTTTTATTCATTTGTGTGGGTAATAATATGTCAAATGTGTGTTTCTAAGGATGGAGAGGAGTTTGTGAAGGGATTAATTTGAGGATTTGTATTGATTTGATTGTACATATGCAAAAATAAACAACTTC</gDNA_template>
            <first_frame> V  A  L  S   : G  G  H  T  L  G  F  S  H  C  S  S  F  R  N  R  I  E  N  F  D  S  K  N  D  V  D  P  S  L  D  A  S  F  A  A  N  L  K  K  I  C  P  V  K  N  T  T  K  N  A  G  A  T  M  D  T  T  T  F  L  F  D  N  A  Y  Y  K  L  I  L  Q  K  K  G  L  F  S  S  D  S  T  L  L  T  N  S  R  T  K  T  L  V  L  N  F  A  N  S  Q  H  E  F  F  K  A  F  A  D  S  M  I  K  M  S  S  I  S  G  S  G  Q  E  I  R  H  D  C  R  F  V  N  *  S  L  V  *  A  W  S  P  F  L  L  E  E  C  F  I  A  R  K  *  L  V  I  F  G  L  V  *  F  F  I  H  L  C  G  *  *  Y  V  K  C  V  F  L  R  M  E  R  S  L  *  R  D  *  F  E  D  L  Y  *  F  D  C  T  Y  A  K  I  N  N  F </first_frame>
            <second_frame>  L  H  F  Q  :  E  D  T  L  L  D  F  L  I  V  H  H  S  E  T  E  *  K  T  S  I  A  K  T  T  S  I  H  H  *  T  H  R  L  Q  L  I  *  R  K  Y  A  L  L  K  T  Q  Q  K  M  Q  G  L  L  W  I  L  R  H  F  Y  S  I  T  R  I  I  N  *  Y  C  K  R  K  V  F  F  L  L  I  Q  L  Y  S  Q  I  Q  E  P  K  H  L  F  *  I  L  P  I  P  N  T  S  S  L  K  L  L  L  I  Q  *  L  R  *  A  V  S  A  V  L  V  K  K  *  G  M  I  V  D  L  L  I  E  A  W  S  E  H  G  V  L  F  Y  *  R  N  V  L  L  H  E  N  N  L  *  F  L  V  W  F  D  F  L  F  I  C  V  G  N  N  M  S  N  V  C  F  *  G  W  R  G  V  C  E  G  I  N  L  R  I  C  I  D  L  I  V  H  M  Q  K  *  T  T   </second_frame>
            <third_frame>   C  T  F  R :   R  T  H  S  W  I  F  S  L  F  I  I  P  K  Q  N  R  K  L  R  *  Q  K  R  R  R  S  I  T  R  R  I  V  C  S  *  F  K  E  N  M  P  C  *  K  H  N  K  K  C  R  G  Y  Y  G  Y  Y  D  I  F  I  R  *  R  V  L  *  I  N  I  A  K  E  R  S  F  F  F  *  F  N  F  T  H  K  F  K  N  Q  N  T  C  F  K  F  C  Q  F  P  T  R  V  L  *  S  F  C  *  F  N  D  *  D  E  Q  Y  Q  R  F  W  S  R  N  K  A  *  L  *  I  C  *  L  K  L  G  L  S  M  E  S  F  F  I  R  G  M  F  Y  C  T  K  I  T  C  N  F  W  F  G  L  I  F  Y  S  F  V  W  V  I  I  C  Q  M  C  V  S  K  D  G  E  E  F  V  K  G  L  I  *  G  F  V  L  I  *  L  Y  I  C  K  N  K  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16523" stop="16535"/>
                    <exon start="16632" stop="17029"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VALSGGHTLGFSHCSSFRNRIENFDSKNDVDPSLDASFAANLKKICPVKNTTKNAGATMDTTTFLFDNAYYKLILQKKGLFSSDSTLLTNSRTKTLVLNFANSQHEFFKAFADSMIKMSSISGSGQEIRHDCRFVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="17873" PGL_stop="20698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17873" e_stop="18146"/>
            <exon e_start="18265" e_stop="18313"/>
            <exon e_start="18429" e_stop="18555"/>
            <exon e_start="19273" e_stop="19343"/>
            <exon e_start="19417" e_stop="19489"/>
            <exon e_start="20108" e_stop="20698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17873" e_stop="18146" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18265" e_stop="18313" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18429" e_stop="18555" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19273" e_stop="19343" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.821" acc_prob="0.991">
            <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19417" e_stop="19489" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.815" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20108" e_stop="20698" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17873" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19417" stop="19489"/>
              <exon start="20108" stop="20388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17880" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19417" stop="19489"/>
              <exon start="20108" stop="20351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17883" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19417" stop="19489"/>
              <exon start="20108" stop="20133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17883" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17883" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17884" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19417" stop="19426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19429" stop="19489"/>
              <exon start="20108" stop="20698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20187" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCCGTCGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG : ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG : ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG : AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG : GTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTG : GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</gDNA_template>
            <first_frame> P  P  S  T  S  T  G  R  S  C  F  Q  F  P  M  T  E  Q  N  A  D  E  A  N  T  V  Q  T  S  N  I  D  N  V  E  L  A  I  V  D  G  S  H  S  D  T  A  Q  K  S  E  P  L  I  E  E  L  Q  D  E  E  L  R  K  L  L  V  P  K  L  E  N  L  P  I  S  P  P  S  A  V  E  S  N  F  V  T  Y  F  A  P   : D  F  M  K  P  G  H  D  Q  Y  V  H  R  H  A  N  G :   L  C  I  I  G  L  A  P  T  H  I  A  F  K  D  E  G  G  V  T  S  V  D  F  N  V  G  K  S  D  R  S  G  I  K  V  S  G  K  R  K  K  :  N  A  Q  H  F  E  S  N  T  A  L  C  K  A  C  T  K  D  G  S  Y  I  V  R :   C  C  V  K  G  S  L  L  E  V  N  D  R  L  I  K  Q  P  E  L  L  N  S  L  :  A  D  R  E  G  Y  I  A  I  I  M  P  R  P  A  D  W  I  K  A  K  T  T  L  L  G  I  E  E  Y  R  E  L  R  K  D  T  L  Q  L  *  T  S  K  V  T  N  Q  L  I  E  G  S  I  L  Q  D  W  S  L  R  C  W  K  S  L  Q  D  V  L  S  L  *  Q  *  A  L  L  L  H  Y  T  L  L  L  L  A  Y  R  R  T  V  S  N  L  I  N  V  L  I  C  T  F  L  V  Y  Y  L  D  G  V  E  F  T  C  P  Q  C  S  I  T  P  Y  F  V  F  Q  S  N  M  I  K  K  H  I  V  R  S  Y  Y  M  K  M  *  H  V  Y  Y  I  A  N  F  L  E  H  E  K  *  E  E  F  V  L  S  M  T  S  H  *  V  Y  K  K  T  K  W  R  K  R  I  V  P  L  L  K  T  K  N  T  K  N  L  L  V  F  V  V </first_frame>
            <second_frame>  L  R  R  L  Q  L  A  G  V  A  S  N  F  R  *  R  S  K  T  L  T  K  P  T  L  F  K  L  R  I  L  T  M  *  N  W  Q  *  L  M  A  L  I  P  T  P  P  R  N  Q  N  H  *  L  K  N  Y  K  M  K  N  *  G  N  F  W  C  R  S  *  K  T  S  Q  F  L  L  L  L  L  L  N  P  I  S  S  P  I  L  L  L  :  I  L  *  N  L  G  M  I  S  M  F  I  D  M  P  M   : D  C  A  *  L  G  W  L  R  P  T  L  L  L  R  M  K  A  E  L  L  R  L  I  S  M  W  G  S  L  I  G  V  E  S  R  S  L  E  S  E  K  R :   T  L  N  I  L  S  L  I  Q  H  Y  V  K  P  A  Q  R  M  V  L  I  L  *   : G  V  V  *  K  A  R  Y  *  K  S  M  I  G  *  L  S  N  Q  N  C  *  T  H  W :   Q  T  E  K  D  I  L  Q  L  *  C  Q  G  P  Q  I  G  S  R  P  R  Q  L  C  W  A  L  K  N  I  E  S  *  E  R  I  H  C  N  Y  K  Q  A  R  *  Q  I  S  S  L  K  A  A  F  C  R  I  G  V  Y  V  V  G  K  V  C  R  M  F  S  L  C  N  S  K  L  Y  Y  F  T  T  H  F  C  Y  W  H  T  E  E  Q  Y  Q  T  *  L  T  F  L  F  V  L  F  W  C  I  I  W  M  G  W  S  L  L  V  H  N  A  P  S  L  H  I  L  F  F  R  A  I  *  *  K  N  I  *  S  V  V  T  I  *  K  C  N  M  S  I  I  L  L  I  F  *  N  M  K  N  E  K  N  L  Y  F  L  *  P  P  I  K  F  T  R  K  Q  N  G  G  K  E  L  F  H  Y  *  R  Q  K  T  R  K  I  Y  L  S  L  L   </second_frame>
            <third_frame>   S  V  D  F  N  W  P  E  L  L  P  I  S  D  D  G  A  K  R  *  R  S  Q  H  C  S  N  F  E  Y  *  Q  C  R  T  G  N  S  *  W  L  S  F  R  H  R  P  E  I  R  T  T  N  *  R  T  T  R  *  R  T  K  E  T  F  G  A  E  V  R  K  P  P  N  F  S  S  F  C  C  *  I  Q  F  R  H  L  F  C  S  * :   F  Y  E  T  W  A  *  S  V  C  S  S  T  C  Q  W  :  I  V  H  N  W  V  G  S  D  P  H  C  F  *  G  *  R  R  S  Y  F  G  *  F  Q  C  G  E  V  *  S  E  W  N  Q  G  L  W  K  A  K  K   : E  R  S  T  F  *  V  *  Y  S  I  M  *  S  L  H  K  G  W  F  L  Y  C  E  :  V  L  C  E  R  L  V  I  R  S  Q  *  *  V  N  *  A  T  R  I  A  E  L  I   : G  R  Q  R  R  I  Y  C  N  Y  N  A  K  A  R  R  L  D  Q  G  Q  D  N  F  A  G  H  *  R  I  *  R  V  E  K  G  Y  I  A  I  I  N  K  Q  G  D  K  S  A  H  *  R  Q  H  F  A  G  L  E  F  T  L  L  E  K  F  A  G  C  S  L  S  V  T  V  S  S  T  T  S  L  H  T  S  A  I  G  I  Q  K  N  S  I  K  L  N  *  R  S  Y  L  Y  F  S  G  V  L  F  G  W  G  G  V  Y  L  S  T  M  L  H  H  S  I  F  C  F  S  E  Q  Y  D  K  K  T  Y  S  P  *  L  L  Y  E  N  V  T  C  L  L  Y  C  *  F  S  R  T  *  K  M  R  R  I  C  T  F  Y  D  L  P  L  S  L  Q  E  N  K  M  E  E  K  N  C  S  I  I  K  D  K  K  H  E  K  F  T  C  L  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17873" stop="18146"/>
                    <exon start="18265" stop="18313"/>
                    <exon start="18429" stop="18555"/>
                    <exon start="19273" stop="19343"/>
                    <exon start="19417" stop="19489"/>
                    <exon start="20108" stop="20230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPSTSTGRSCFQFPMTEQNADEANTVQTSNIDNVELAIVDGSHSDTAQKSEPLIEELQDEELRKLLVPKLENLPISPPSAVESNFVTYFAPDFMKPGHDQYVHRHANGLCIIGLAPTHIAFKDEGGVTSVDFNVGKSDRSGIKVSGKRKKNAQHFESNTALCKACTKDGSYIVRCCVKGSLLEVNDRLIKQPELLNSLADREGYIAIIMPRPADWIKAKTTLLGIEEYRELRKDTLQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20333" stop="20539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLLHYTLLLLAYRRTVSNLINVLICTFLVYYLDGVEFTCPQCSITPYFVFQSNMIKKHIVRSYYMKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17883" e_stop="18146"/>
            <exon e_start="18265" e_stop="18313"/>
            <exon e_start="18429" e_stop="18555"/>
            <exon e_start="19273" e_stop="19343"/>
            <exon e_start="19431" e_stop="19489"/>
            <exon e_start="20108" e_stop="20698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.464" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="1.000" e_score="0.966"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17883" e_stop="18146" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18265" e_stop="18313" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18429" e_stop="18555" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19273" e_stop="19343" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.821" acc_prob="0.464">
            <gDNA_intron_boundary i_start="19344" i_stop="19430" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="19431" e_stop="19489" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.815" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20108" e_stop="20698" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17883" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17883" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19431" stop="19489"/>
              <exon start="20108" stop="20408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18072" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19431" stop="19489"/>
              <exon start="20108" stop="20540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20187" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG : ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG : ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG : AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG : GCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTG : GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</gDNA_template>
            <first_frame> L  Q  L  A  G  V  A  S  N  F  R  *  R  S  K  T  L  T  K  P  T  L  F  K  L  R  I  L  T  M  *  N  W  Q  *  L  M  A  L  I  P  T  P  P  R  N  Q  N  H  *  L  K  N  Y  K  M  K  N  *  G  N  F  W  C  R  S  *  K  T  S  Q  F  L  L  L  L  L  L  N  P  I  S  S  P  I  L  L  L  :  I  L  *  N  L  G  M  I  S  M  F  I  D  M  P  M   : D  C  A  *  L  G  W  L  R  P  T  L  L  L  R  M  K  A  E  L  L  R  L  I  S  M  W  G  S  L  I  G  V  E  S  R  S  L  E  S  E  K  R :   T  L  N  I  L  S  L  I  Q  H  Y  V  K  P  A  Q  R  M  V  L  I  L  *   : G  S  L  L  E  V  N  D  R  L  I  K  Q  P  E  L  L  N  S  L  :  A  D  R  E  G  Y  I  A  I  I  M  P  R  P  A  D  W  I  K  A  K  T  T  L  L  G  I  E  E  Y  R  E  L  R  K  D  T  L  Q  L  *  T  S  K  V  T  N  Q  L  I  E  G  S  I  L  Q  D  W  S  L  R  C  W  K  S  L  Q  D  V  L  S  L  *  Q  *  A  L  L  L  H  Y  T  L  L  L  L  A  Y  R  R  T  V  S  N  L  I  N  V  L  I  C  T  F  L  V  Y  Y  L  D  G  V  E  F  T  C  P  Q  C  S  I  T  P  Y  F  V  F  Q  S  N  M  I  K  K  H  I  V  R  S  Y  Y  M  K  M  *  H  V  Y  Y  I  A  N  F  L  E  H  E  K  *  E  E  F  V  L  S  M  T  S  H  *  V  Y  K  K  T  K  W  R  K  R  I  V  P  L  L  K  T  K  N  T  K  N  L  L  V  F  V  V </first_frame>
            <second_frame>  F  N  W  P  E  L  L  P  I  S  D  D  G  A  K  R  *  R  S  Q  H  C  S  N  F  E  Y  *  Q  C  R  T  G  N  S  *  W  L  S  F  R  H  R  P  E  I  R  T  T  N  *  R  T  T  R  *  R  T  K  E  T  F  G  A  E  V  R  K  P  P  N  F  S  S  F  C  C  *  I  Q  F  R  H  L  F  C  S  * :   F  Y  E  T  W  A  *  S  V  C  S  S  T  C  Q  W  :  I  V  H  N  W  V  G  S  D  P  H  C  F  *  G  *  R  R  S  Y  F  G  *  F  Q  C  G  E  V  *  S  E  W  N  Q  G  L  W  K  A  K  K   : E  R  S  T  F  *  V  *  Y  S  I  M  *  S  L  H  K  G  W  F  L  Y  C  E  :  A  R  Y  *  K  S  M  I  G  *  L  S  N  Q  N  C  *  T  H  W :   Q  T  E  K  D  I  L  Q  L  *  C  Q  G  P  Q  I  G  S  R  P  R  Q  L  C  W  A  L  K  N  I  E  S  *  E  R  I  H  C  N  Y  K  Q  A  R  *  Q  I  S  S  L  K  A  A  F  C  R  I  G  V  Y  V  V  G  K  V  C  R  M  F  S  L  C  N  S  K  L  Y  Y  F  T  T  H  F  C  Y  W  H  T  E  E  Q  Y  Q  T  *  L  T  F  L  F  V  L  F  W  C  I  I  W  M  G  W  S  L  L  V  H  N  A  P  S  L  H  I  L  F  F  R  A  I  *  *  K  N  I  *  S  V  V  T  I  *  K  C  N  M  S  I  I  L  L  I  F  *  N  M  K  N  E  K  N  L  Y  F  L  *  P  P  I  K  F  T  R  K  Q  N  G  G  K  E  L  F  H  Y  *  R  Q  K  T  R  K  I  Y  L  S  L  L   </second_frame>
            <third_frame>   S  T  G  R  S  C  F  Q  F  P  M  T  E  Q  N  A  D  E  A  N  T  V  Q  T  S  N  I  D  N  V  E  L  A  I  V  D  G  S  H  S  D  T  A  Q  K  S  E  P  L  I  E  E  L  Q  D  E  E  L  R  K  L  L  V  P  K  L  E  N  L  P  I  S  P  P  S  A  V  E  S  N  F  V  T  Y  F  A  P   : D  F  M  K  P  G  H  D  Q  Y  V  H  R  H  A  N  G :   L  C  I  I  G  L  A  P  T  H  I  A  F  K  D  E  G  G  V  T  S  V  D  F  N  V  G  K  S  D  R  S  G  I  K  V  S  G  K  R  K  K  :  N  A  Q  H  F  E  S  N  T  A  L  C  K  A  C  T  K  D  G  S  Y  I  V  R :   L  V  I  R  S  Q  *  *  V  N  *  A  T  R  I  A  E  L  I   : G  R  Q  R  R  I  Y  C  N  Y  N  A  K  A  R  R  L  D  Q  G  Q  D  N  F  A  G  H  *  R  I  *  R  V  E  K  G  Y  I  A  I  I  N  K  Q  G  D  K  S  A  H  *  R  Q  H  F  A  G  L  E  F  T  L  L  E  K  F  A  G  C  S  L  S  V  T  V  S  S  T  T  S  L  H  T  S  A  I  G  I  Q  K  N  S  I  K  L  N  *  R  S  Y  L  Y  F  S  G  V  L  F  G  W  G  G  V  Y  L  S  T  M  L  H  H  S  I  F  C  F  S  E  Q  Y  D  K  K  T  Y  S  P  *  L  L  Y  E  N  V  T  C  L  L  Y  C  *  F  S  R  T  *  K  M  R  R  I  C  T  F  Y  D  L  P  L  S  L  Q  E  N  K  M  E  E  K  N  C  S  I  I  K  D  K  K  H  E  K  F  T  C  L  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17885" stop="18146"/>
                    <exon start="18265" stop="18313"/>
                    <exon start="18429" stop="18555"/>
                    <exon start="19273" stop="19343"/>
                    <exon start="19431" stop="19452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STGRSCFQFPMTEQNADEANTVQTSNIDNVELAIVDGSHSDTAQKSEPLIEELQDEELRKLLVPKLENLPISPPSAVESNFVTYFAPDFMKPGHDQYVHRHANGLCIIGLAPTHIAFKDEGGVTSVDFNVGKSDRSGIKVSGKRKKNAQHFESNTALCKACTKDGSYIVRLVIRSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20333" stop="20539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLLHYTLLLLAYRRTVSNLINVLICTFLVYYLDGVEFTCPQCSITPYFVFQSNMIKKHIVRSYYMKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="30785" PGL_stop="36185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30785" e_stop="31505"/>
            <exon e_start="31680" e_stop="32214"/>
            <exon e_start="32288" e_stop="32441"/>
            <exon e_start="32606" e_stop="32696"/>
            <exon e_start="34731" e_stop="34817"/>
            <exon e_start="35400" e_stop="36185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.983"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="30785" e_stop="31505" e_length="721"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31506" i_stop="31679" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31680" e_stop="32214" e_length="535"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32288" e_stop="32441" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="32606" e_stop="32696" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.817" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32697" i_stop="34730" i_length="2034"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34731" e_stop="34817" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34818" i_stop="35399" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="35400" e_stop="36185" e_length="786"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30785" stop="31328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30792" stop="31505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30799" stop="31193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30805" stop="31303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30924" stop="31298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31152" stop="31505"/>
              <exon start="31680" stop="31823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31443" stop="31505"/>
              <exon start="31680" stop="32065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31487" stop="31505"/>
              <exon start="31680" stop="32214"/>
              <exon start="32288" stop="32404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31693" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31693" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31828" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31945" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32181" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32696"/>
              <exon start="34731" stop="34817"/>
              <exon start="35400" stop="35829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32204" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32696"/>
              <exon start="34731" stop="34817"/>
              <exon start="35400" stop="35730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35481" stop="36183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35842" stop="36185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAACTTCAAGATGGATCGGTTTCTGTTTCTCAG : GGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATG : ATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAG : TGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGA : GTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAG : GATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAGGTGAGTGGAAGAGTTAAACTAATGTGTAAGTTATCTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGCTTGAGACTTTCGAGTCGTTTGGCTCGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTCTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTCTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTTGCATCTCATTATA</gDNA_template>
            <first_frame> *  N  P  K  I  Y  S  L  S  L  S  H  L  M  L  S  K  N  L  N  F  L  L  I  T  L  P  *  I  S  C  L  I  F  I  F  F  L  S  A  F  L  F  N  L  F  D  S  V  D  R  Y  W  V  F  F  S  E  F  F  F  D  F  F  V  L  V  L  N  G  H  A  A  A  G  F  F  C  *  S  T  G  G  Q  Y  R  W  C  R  R  C  D  I  R  R  R  C  S  G  R  R  G  Y  C  Q  Q  S  S  S  S  P  E  F  A  S  T  M  G  S  S  G  S  W  R  R  G  *  S  S  I  S  V  K  S  S  L  A  V  T  D  G  S  G  C  R  C  F  A  G  E  N  F  A  V  G  *  L  L  D  P  E  D  F  A  G  D  F  Y  F  R  C  S  A  G  E  C  *  *  Q  *  G  Q  C  R  S  A  E  E  A  C  L  E  *  T  C  K  R  C  S  *  G  G  F  C  Y  G  W  G  C  F  L  A  C  S  L  *  V  Y  S  A  *  P  K  I  S  Y  *  F  S  K  T  S  R  W  I  G  F  C  F  S   : G  S  N  N  F  S  V  T  S  K  T  G  *  C  *  C  K  H  K  F  K  C  K  S  Y  N  P  C  *  T  K  I  N  K  I  Q  R  *  *  Q  Q  W  W  W  W  W  *  W  S  R  C  W  S  I  Y  *  N  S  A  S  T  S  T  S  I  A  S  S  F  S  C  N  A  F  P  T  C  S  *  A  S  C  K  R  C  K  T  C  W  R  I  S  V  S  A  A  W  S  K  *  S  F  F  P  *  K  S  W  Q  E  R  *  L  W  G  P  T  S  W  R  W  V  L  S  *  Q  S  W  G  K  A  *  S  R  S  E  R  R  S  Y  G  S  S  I  C  S  S  S  S  C  S  V  Y  A  S  S  T  P  W  F  W  S  I  S  S  N  P  Y  E  N  T  F  C  *  S  D  G  I  * :   Y  D  S  L  L  L  R  S  S  T  E  S  G  A  L  *  C  C  A  Y  H  Q  P  S  S  T  I  T  P  T  F  T  F  S  G  S  K  F  A  F  L  L  G  *  S  D  R  V  L  L  Q  :  *  C  *  S  C  K  R  *  L  F  E  G  K  D  G  *  G  R  V  G  S  N  A  S  D  C  *  L  S  S   : S  *  E  N  D  R  E  G  P  V  *  Y  Y  P  V  H  F  V  L  F  E  G  F  N  V  C  R  S  A   : G  *  Q  G  K  E  T  G  W  L  E  E  M  D  S  Y  C  W  P  A  C  S  *  F  R  F  V  H  T  C  C  I  V  R  W  W  S  N  S  F  L  A  E  C  L  *  E  *  I  S  Y  K  Y  Q  Q  C  Y  R  S  D  R  C  S  T  G  G  S  C  W  W  L  I  G  R  I  S  *  S  I  K  P  S  S  R  R  R  R  R  W  R  G  K  Y  L  Y  Q  P  C  M  K  *  Y  C  R  F  C  N  E  W  Q  L  C  F  A  F  *  F  K  G  R  C  I  W  K  G  Y  T  Y  I  I  C  C  P  C  W  R  P  Y  F  L  Q  F  L  R  *  V  E  E  L  N  *  C  V  S  Y  L  V  *  R  V  E  R  *  W  R  L  K  G  Y  T  V  E  L  E  T  F  E  S  F  G  S  Y  T  C  I  T  Y  A  G  W  Y  S  I  V  I  Q  W  S  E  F  G  F  *  A  *  G  L  T  F  L  G  *  N  F  T  S  I  S  E  E  T  F  *  K  C  R  F  S  A  W  L  V  S  R  V  I  V  L  C  *  F  C  Y  T  Y  L  G  I  L  I  V  L  N  Y  F  F  F  F  A  S  H  Y  </first_frame>
            <second_frame>  E  T  L  K  F  T  A  F  L  S  H  T  *  C  F  L  K  T  S  I  F  F  S  S  L  F  L  E  F  R  A  *  F  S  S  F  F  S  L  H  F  C  L  I  S  L  I  L  L  I  G  T  G  F  F  F  L  N  F  F  L  I  F  L  F  W  F  *  M  A  T  P  P  P  D  S  S  A  S  P  P  A  A  N  T  D  G  V  A  V  V  T  S  G  A  G  A  A  A  V  G  A  T  V  S  S  P  Q  A  R  R  S  L  Q  A  P  W  A  Q  V  V  R  G  G  E  V  E  A  V  S  V  S  S  P  R  S  P  S  P  M  A  A  A  A  G  V  S  P  E  K  I  S  L  S  D  D  C  S  T  Q  K  I  S  P  E  I  S  T  S  G  A  L  P  E  S  A  D  S  N  E  G  N  V  G  R  P  K  K  P  A  W  N  K  P  V  N  G  V  V  E  A  V  S  V  M  G  G  A  V  S  W  P  A  L  S  E  S  T  R  P  S  P  K  S  A  T  D  S  A  K  L  Q  D  G  S  V  S  V  S  Q  :  G  P  I  I  S  Q  S  P  Q  K  Q  A  N  V  N  A  N  T  N  S  N  A  N  P  T  T  P  V  R  Q  R  S  I  K  Y  R  G  S  S  S  S  G  G  G  G  G  S  G  P  G  A  G  A  F  I  R  T  P  P  P  P  P  P  P  L  P  P  P  F  P  V  M  H  F  P  P  V  L  E  P  P  V  R  G  A  R  P  V  G  G  F  P  S  Q  P  H  G  V  N  D  H  S  S  H  R  N  H  G  R  K  G  N  F  G  G  R  P  R  G  D  G  S  Y  H  N  N  H  G  G  R  R  D  Q  D  R  R  D  V  H  M  G  P  P  F  A  P  P  P  H  A  A  F  M  R  A  P  L  P  G  S  G  P  F  L  P  T  P  M  R  T  P  F  V  N  Q  M  A  Y   : D  M  T  P  F  F  Y  V  P  P  L  S  P  E  P  Y  S  A  V  P  I  I  N  Q  A  P  Q  L  P  Q  H  L  P  L  V  D  P  N  L  P  S  S  L  V  N  Q  I  E  Y  Y  F  S :   D  A  N  L  V  K  D  D  F  L  R  V  K  M  D  E  E  G  W  V  P  M  H  L  I  A  N  F  P  R  :  V  K  K  M  T  E  K  V  Q  S  D  I  I  Q  F  I  L  Y  C  L  R  A  S  T  F  V  E  V  Q  :  D  D  K  V  R  R  R  D  G  W  R  K  W  T  R  T  A  G  Q  L  A  A  D  S  G  L  S  T  P  V  A  S  S  D  G  G  P  T  A  S  L  Q  N  V  S  E  N  E  S  A  T  N  I  S  S  A  T  E  V  T  D  A  Q  L  E  V  A  A  G  G  S  S  D  E  S  A  N  Q  S  N  P  A  Q  E  E  G  G  A  G  V  E  N  I  S  T  N  H  A  *  N  N  T  V  D  F  A  T  S  G  N  S  V  L  H  S  D  L  K  E  G  V  F  G  R  V  I  H  T  S  F  A  A  L  V  G  G  H  T  F  C  S  F  *  G  E  W  K  S  *  T  N  V  *  V  I  W  Y  R  E  W  N  D  S  G  D  *  K  D  I  Q  L  S  L  R  L  S  S  R  L  A  R  I  L  A  S  H  M  Q  A  G  I  P  L  *  F  N  G  V  N  L  D  F  E  P  K  V  *  L  F  W  V  E  T  L  P  P  F  Q  R  K  H  S  E  N  V  D  L  V  L  G  W  Y  P  E  *  L  C  S  A  D  F  V  I  L  I  *  A  Y  *  L  F  *  I  I  F  S  F  L  H  L  I  I </second_frame>
            <third_frame>   K  P  *  N  L  Q  P  F  S  L  T  P  D  A  F  *  K  P  Q  F  S  S  H  H  S  S  L  N  F  V  P  D  F  H  L  F  S  L  C  I  F  V  *  S  L  *  F  C  *  S  V  L  G  F  F  F  *  I  F  F  *  F  F  C  F  G  F  E  W  P  R  R  R  R  I  L  L  L  V  H  R  R  P  I  Q  M  V  S  P  L  *  H  P  A  P  V  Q  R  P  S  G  L  L  S  A  V  L  K  L  A  G  V  C  K  H  H  G  L  K  W  F  V  E  E  R  L  K  Q  Y  Q  C  Q  V  L  A  R  R  H  R  W  Q  R  L  Q  V  F  R  R  R  K  F  R  C  R  M  I  A  R  P  R  R  F  R  R  R  F  L  L  P  V  L  C  R  R  V  L  I  A  M  R  A  M  *  V  G  R  R  S  L  L  G  I  N  L  *  T  V  *  L  R  R  F  L  L  W  V  G  L  F  P  G  L  L  S  L  S  L  L  G  L  A  Q  N  Q  L  L  I  Q  Q  N  F  K  M  D  R  F  L  F  L  R :   V  Q  *  F  L  S  H  L  K  N  R  L  M  L  M  Q  T  Q  I  Q  M  Q  I  L  Q  P  L  L  D  K  D  Q  *  N  T  E  V  V  A  A  V  V  V  V  V  V  V  V  Q  V  L  E  H  L  L  E  L  R  L  H  L  H  L  H  C  L  L  L  F  L  *  C  I  S  H  L  F  L  S  L  L  *  E  V  Q  D  L  L  E  D  F  R  L  S  R  M  E  *  M  I  I  L  P  I  E  I  M  A  G  K  V  T  L  G  A  D  L  V  E  M  G  L  I  I  T  I  M  G  E  G  V  I  K  I  G  E  T  F  I  W  V  L  H  L  L  L  L  L  M  Q  R  L  C  E  L  H  S  L  V  L  V  H  F  F  Q  P  L  *  E  H  L  L  L  I  R  W  H  M  :  I  *  L  P  S  F  T  F  L  H  *  V  R  S  P  I  V  L  C  L  S  S  T  K  L  H  N  Y  P  N  I  Y  L  *  W  I  Q  I  C  L  P  P  W  L  I  R  *  S  I  T  S   : V  M  L  I  L  *  K  M  T  F  *  G  *  R  W  M  R  K  G  G  F  Q  C  I  *  L  L  T  F  L  E :   L  R  K  *  Q  R  R  S  S  L  I  L  S  S  S  F  C  I  V  *  G  L  Q  R  L  *  K  C  R :   M  T  R  *  G  D  G  M  V  G  G  N  G  L  V  L  L  A  S  L  Q  L  I  Q  V  C  P  H  L  L  H  R  Q  M  V  V  Q  Q  L  P  C  R  M  S  L  R  M  N  Q  L  Q  I  S  A  V  L  Q  K  *  P  M  L  N  W  R  *  L  L  V  A  H  R  T  N  Q  L  I  N  Q  T  Q  L  K  K  K  A  A  L  A  W  K  I  S  L  P  T  M  H  E  I  I  L  S  I  L  Q  R  V  A  T  L  F  C  I  L  I  *  R  K  V  Y  L  E  G  L  Y  I  H  H  L  L  P  L  L  E  A  I  L  F  A  V  F  E  V  S  G  R  V  K  L  M  C  K  L  S  G  I  E  S  G  T  I  V  E  I  K  R  I  Y  S  *  A  *  D  F  R  V  V  W  L  V  Y  L  H  H  I  C  R  L  V  F  H  C  D  S  M  E  *  I  W  I  L  S  L  R  F  N  F  F  G  L  K  L  Y  L  H  F  R  G  N  I  L  K  M  *  I  *  C  L  A  G  I  Q  S  D  C  A  L  L  I  L  L  Y  L  S  R  H  I  D  C  F  K  L  F  F  L  F  C  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30990" stop="31505"/>
                    <exon start="31680" stop="32214"/>
                    <exon start="32288" stop="32441"/>
                    <exon start="32606" stop="32696"/>
                    <exon start="34731" stop="34817"/>
                    <exon start="35400" stop="35696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1677</number_coding_nucleotides>
                  <number_encoded_amino_acids>559</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATPPPDSSASPPAANTDGVAVVTSGAGAAAVGATVSSPQARRSLQAPWAQVVRGGEVEAVSVSSPRSPSPMAAAAGVSPEKISLSDDCSTQKISPEISTSGALPESADSNEGNVGRPKKPAWNKPVNGVVEAVSVMGGAVSWPALSESTRPSPKSATDSAKLQDGSVSVSQGPIISQSPQKQANVNANTNSNANPTTPVRQRSIKYRGSSSSGGGGGSGPGAGAFIRTPPPPPPPLPPPFPVMHFPPVLEPPVRGARPVGGFPSQPHGVNDHSSHRNHGRKGNFGGRPRGDGSYHNNHGGRRDQDRRDVHMGPPFAPPPHAAFMRAPLPGSGPFLPTPMRTPFVNQMAYDMTPFFYVPPLSPEPYSAVPIINQAPQLPQHLPLVDPNLPSSLVNQIEYYFSDANLVKDDFLRVKMDEEGWVPMHLIANFPRVKKMTEKVQSDIIQFILYCLRASTFVEVQDDKVRRRDGWRKWTRTAGQLAADSGLSTPVASSDGGPTASLQNVSENESATNISSATEVTDAQLEVAAGGSSDESANQSNPAQEEGGAGVENISTNHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30785" e_stop="31458"/>
            <exon e_start="35548" e_stop="35818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="30785" e_stop="31458" e_length="674"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31459" i_stop="35547" i_length="4089"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="35548" e_stop="35818" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30785" stop="31328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30799" stop="31193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30805" stop="31303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="31458"/>
              <exon start="35548" stop="35818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30924" stop="31298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAG : CTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTG</gDNA_template>
            <first_frame> *  N  P  K  I  Y  S  L  S  L  S  H  L  M  L  S  K  N  L  N  F  L  L  I  T  L  P  *  I  S  C  L  I  F  I  F  F  L  S  A  F  L  F  N  L  F  D  S  V  D  R  Y  W  V  F  F  S  E  F  F  F  D  F  F  V  L  V  L  N  G  H  A  A  A  G  F  F  C  *  S  T  G  G  Q  Y  R  W  C  R  R  C  D  I  R  R  R  C  S  G  R  R  G  Y  C  Q  Q  S  S  S  S  P  E  F  A  S  T  M  G  S  S  G  S  W  R  R  G  *  S  S  I  S  V  K  S  S  L  A  V  T  D  G  S  G  C  R  C  F  A  G  E  N  F  A  V  G  *  L  L  D  P  E  D  F  A  G  D  F  Y  F  R  C  S  A  G  E  C  *  *  Q  *  G  Q  C  R  S  A  E  E  A  C  L  E  *  T  C  K  R  C  S  *  G  G  F  C  Y  G  W  G  C  F  L  A  C  S  L  *  V  Y  S  A  *  P  K  I  S :   Y  K  Y  Q  Q  C  Y  R  S  D  R  C  S  T  G  G  S  C  W  W  L  I  G  R  I  S  *  S  I  K  P  S  S  R  R  R  R  R  W  R  G  K  Y  L  Y  Q  P  C  M  K  *  Y  C  R  F  C  N  E  W  Q  L  C  F  A  F  *  F  K  G  R  C  I  W  K  G  Y  T  Y  I  I  C  C  P  C  W  R  P  Y  F  L </first_frame>
            <second_frame>  E  T  L  K  F  T  A  F  L  S  H  T  *  C  F  L  K  T  S  I  F  F  S  S  L  F  L  E  F  R  A  *  F  S  S  F  F  S  L  H  F  C  L  I  S  L  I  L  L  I  G  T  G  F  F  F  L  N  F  F  L  I  F  L  F  W  F  *  M  A  T  P  P  P  D  S  S  A  S  P  P  A  A  N  T  D  G  V  A  V  V  T  S  G  A  G  A  A  A  V  G  A  T  V  S  S  P  Q  A  R  R  S  L  Q  A  P  W  A  Q  V  V  R  G  G  E  V  E  A  V  S  V  S  S  P  R  S  P  S  P  M  A  A  A  A  G  V  S  P  E  K  I  S  L  S  D  D  C  S  T  Q  K  I  S  P  E  I  S  T  S  G  A  L  P  E  S  A  D  S  N  E  G  N  V  G  R  P  K  K  P  A  W  N  K  P  V  N  G  V  V  E  A  V  S  V  M  G  G  A  V  S  W  P  A  L  S  E  S  T  R  P  S  P  K  S   : A  T  N  I  S  S  A  T  E  V  T  D  A  Q  L  E  V  A  A  G  G  S  S  D  E  S  A  N  Q  S  N  P  A  Q  E  E  G  G  A  G  V  E  N  I  S  T  N  H  A  *  N  N  T  V  D  F  A  T  S  G  N  S  V  L  H  S  D  L  K  E  G  V  F  G  R  V  I  H  T  S  F  A  A  L  V  G  G  H  T  F   </second_frame>
            <third_frame>   K  P  *  N  L  Q  P  F  S  L  T  P  D  A  F  *  K  P  Q  F  S  S  H  H  S  S  L  N  F  V  P  D  F  H  L  F  S  L  C  I  F  V  *  S  L  *  F  C  *  S  V  L  G  F  F  F  *  I  F  F  *  F  F  C  F  G  F  E  W  P  R  R  R  R  I  L  L  L  V  H  R  R  P  I  Q  M  V  S  P  L  *  H  P  A  P  V  Q  R  P  S  G  L  L  S  A  V  L  K  L  A  G  V  C  K  H  H  G  L  K  W  F  V  E  E  R  L  K  Q  Y  Q  C  Q  V  L  A  R  R  H  R  W  Q  R  L  Q  V  F  R  R  R  K  F  R  C  R  M  I  A  R  P  R  R  F  R  R  R  F  L  L  P  V  L  C  R  R  V  L  I  A  M  R  A  M  *  V  G  R  R  S  L  L  G  I  N  L  *  T  V  *  L  R  R  F  L  L  W  V  G  L  F  P  G  L  L  S  L  S  L  L  G  L  A  Q  N  Q  :  L  Q  I  S  A  V  L  Q  K  *  P  M  L  N  W  R  *  L  L  V  A  H  R  T  N  Q  L  I  N  Q  T  Q  L  K  K  K  A  A  L  A  W  K  I  S  L  P  T  M  H  E  I  I  L  S  I  L  Q  R  V  A  T  L  F  C  I  L  I  *  R  K  V  Y  L  E  G  L  Y  I  H  H  L  L  P  L  L  E  A  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30990" stop="31458"/>
                    <exon start="35548" stop="35696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATPPPDSSASPPAANTDGVAVVTSGAGAAAVGATVSSPQARRSLQAPWAQVVRGGEVEAVSVSSPRSPSPMAAAAGVSPEKISLSDDCSTQKISPEISTSGALPESADSNEGNVGRPKKPAWNKPVNGVVEAVSVMGGAVSWPALSESTRPSPKSATNISSATEVTDAQLEVAAGGSSDESANQSNPAQEEGGAGVENISTNHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33930" e_stop="34690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="33930" e_stop="34690" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33930" stop="34690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33933" stop="34622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34015" stop="34638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACA</gDNA_template>
            <first_frame> T  F  F  L  S  N  G  Y  R  Q  M  I  A  C  L  S  L  E  F  G  S  M  S  K  *  I  L  A  L  F  M  G  S  L  N  S  G  I  I  T  N  K  A  L  D  L  V  N  A  F  R  T  S  V  I  P  I  V  Q  I  I  *  P  F  S  L  G  G  I  L  Y  V  R  V  L  I  M  A  I  L  *  D  V  *  L  F  F  T  L  R  F  A  I  L  S  F  I  E  G  F  I  I  T  N  L  L  *  S  A  I  I  L  C  V  M  L  L  D  Y  S  F  D  *  N  I  H  I  C  K  I  H  P  K  K  P  Y  *  I  S  V  A  P  P  *  I  Y  T  I  G  F  *  K  S  V  E  C  Y  I  W  D  L  N  L  *  S  K  A  I  S  *  P  P  L  T  L  H  *  T  F  S  Y  S  K  G  I  Q  Q  L  M  C  N  *  K  N  C  F  Y  P  I  K  Q  Y  T  F  Q  *  R  G  F  N  F  H  Q  L  R  L  A  T  A  K  Y  A  Q  Y  *  N  H  M  C  M  Q  F  P  Y  L  F  P  R  N  I  Y  C  L  F  L  T  C  F  Y  N  I  V  V   </first_frame>
            <second_frame>  H  F  F  Y  P  M  D  T  D  K  *  L  H  A  *  V  *  N  L  V  Q  C  P  S  R  F  *  H  S  L  W  D  L  *  I  V  E  L  L  Q  I  R  L  W  I  S  S  M  L  L  G  L  L  L  F  L  L  S  R  L  F  N  R  F  L  L  V  E  F  Y  M  F  E  Y  *  L  W  Q  Y  Y  K  M  S  D  F  F  L  L  *  D  L  Q  F  C  L  L  *  R  A  L  L  *  L  I  Y  C  N  L  Q  S  Y  Y  V  L  C  Y  L  T  I  H  L  T  E  T  Y  I  S  A  K  Y  T  Q  K  S  R  T  K  Y  Q  W  P  P  H  K  S  I  L  L  D  F  K  N  Q  *  N  V  I  Y  G  I  *  T  C  D  L  K  Q  F  L  N  L  L  *  L  F  T  K  L  F  L  I  A  R  A  S  N  N  L  C  V  T  K  K  I  A  F  T  L  S  N  S  I  L  F  N  E  G  D  S  I  F  I  N  L  D  L  P  L  L  N  M  P  N  I  E  T  I  C  V  C  N  F  H  T  C  F  L  V  I  S  I  V  C  S  *  H  A  F  T  I  *  *  Y  </second_frame>
            <third_frame>   I  F  F  I  Q  W  I  Q  T  N  D  C  M  P  K  S  R  I  W  F  N  V  Q  V  D  F  S  T  L  Y  G  I  F  K  *  W  N  Y  Y  K  *  G  F  G  S  R  Q  C  F  *  D  F  C  Y  S  Y  C  P  D  Y  L  T  V  F  S  W  W  N  S  I  C  S  S  I  D  Y  G  N  T  I  R  C  L  T  F  F  Y  F  E  I  C  N  F  V  F  Y  R  G  L  Y  Y  N  *  S  T  V  I  C  N  H  I  M  C  Y  V  T  *  L  F  I  *  L  K  H  T  Y  L  Q  N  T  P  K  K  A  V  L  N  I  S  G  P  P  I  N  L  Y  Y  W  I  L  K  I  S  R  M  L  Y  M  G  F  K  P  V  I  *  S  N  F  L  T  S  F  D  S  S  L  N  F  F  L  *  Q  G  H  P  T  T  Y  V  *  L  K  K  L  L  L  P  Y  Q  T  V  Y  F  S  M  K  G  I  Q  F  S  S  T  *  T  C  H  C  *  I  C  P  I  L  K  P  Y  V  Y  A  I  S  I  L  V  S  S  *  Y  L  L  F  V  L  D  M  L  L  Q  Y  S  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34450" stop="34665"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFTKLFLIARASNNLCVTKKIAFTLSNSILFNEGDSIFINLDLPLLNMPNIETICVCNFHTCFLVISIVCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43030" PGL_stop="43727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43030" e_stop="43727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43030" e_stop="43727" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43030" stop="43727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43030" stop="43727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43042" stop="43727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</gDNA_template>
            <first_frame> H  T  T  *  E  L  E  K  Q  A  L  H  W  H  L  I  Q  D  W  S  T  R  L  T  P  Q  T  T  C  S  T  Y  A  Q  L  A  T  I  N  Q  R  *  N  S  F  Q  I  Q  F  L  M  I  F  H  V  P  P  T  Q  V  L  N  P  S  H  K  *  T  T  L  P  L  L  F  Q  I  S  K  K  M  K  S  R  K  *  Q  E  L  *  L  T  *  D  K  T  T  Q  H  T  Q  Q  V  *  R  H  Q  L  V  W  K  S  K  *  P  R  I  N  W  Y  L  Q  I  I  A  R  S  *  A  M  K  C  L  S  K  L  H  L  N  Q  R  K  T  C  L  D  Q  L  H  G  Q  M  V  N  T  K  S  E  V  H  S  L  Y  L  L  I  H  K  V  N  T  P  K  Q  Q  I  A  D  Q  T  S  L  A  S  L  Y  I  L  *  *  S  M  S  M  Y  T  T  M  L  Q  L  H  H  I  H  A  Y  M  K  K  R  A  K  *  R  S  D  D  R  L  V  H  R  V  R  I  *  Y  Y  L  R  F  N   </first_frame>
            <second_frame>  I  R  H  R  S  W  R  S  K  P  F  I  G  T  *  S  R  I  G  L  R  D  *  H  R  R  L  L  A  V  P  M  L  S  W  L  R  *  I  K  D  K  T  H  F  K  Y  S  S  *  *  F  F  M  S  H  Q  L  K  F  *  I  R  L  T  N  E  L  P  F  H  C  C  F  K  Y  Q  R  K  *  N  Q  E  S  N  K  N  C  N  *  R  R  T  R  R  R  N  I  H  S  K  Y  K  G  T  S  W  F  G  S  P  S  D  P  E  *  I  G  I  Y  K  *  *  Q  E  V  E  L  *  N  V  F  Q  S  F  I  *  T  K  G  R  L  V  W  I  N  Y  M  D  K  W  *  I  Q  S  P  K  S  I  R  Y  I  Y  *  F  T  R  *  T  L  Q  N  S  R  S  Q  I  K  L  V  *  Q  V  C  I  Y  C  N  S  P  C  P  C  T  Q  L  C  Y  N  Y  I  I  Y  M  L  T  *  K  K  E  R  N  K  D  Q  M  T  D  S  F  T  E  *  E  Y  N  T  T  S  D  S  I  </second_frame>
            <third_frame>   Y  D  I  G  A  G  E  A  S  P  S  L  A  L  N  P  G  L  V  Y  E  T  N  T  A  D  Y  L  Q  Y  L  C  S  V  G  Y  D  K  S  K  I  K  L  I  S  N  T  V  P  D  D  F  S  C  P  T  N  S  S  S  E  S  V  S  Q  M  N  Y  P  S  I  A  V  S  N  I  K  E  N  E  I  K  K  V  T  R  T  V  T  N  V  G  Q  D  D  A  T  Y  T  A  S  I  K  A  P  V  G  L  E  V  Q  V  T  P  N  K  L  V  F  T  N  N  S  K  K  L  S  Y  E  M  S  F  K  A  S  S  K  P  K  E  D  L  F  G  S  I  T  W  T  N  G  K  Y  K  V  R  S  P  F  V  I  S  T  N  S  Q  G  E  H  S  K  T  A  D  R  R  S  N  *  S  S  K  F  V  Y  T  V  I  V  H  V  H  V  H  N  Y  V  T  T  T  S  Y  T  C  L  H  E  K  K  S  E  I  K  I  R  *  Q  T  R  S  Q  S  E  N  I  I  L  P  P  I  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43032" stop="43568"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDIGAGEASPSLALNPGLVYETNTADYLQYLCSVGYDKSKIKLISNTVPDDFSCPTNSSSESVSQMNYPSIAVSNIKENEIKKVTRTVTNVGQDDATYTASIKAPVGLEVQVTPNKLVFTNNSKKLSYEMSFKASSKPKEDLFGSITWTNGKYKVRSPFVISTNSQGEHSKTADRRSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="46856" PGL_stop="46384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46856" e_stop="46777"/>
            <exon e_start="46699" e_stop="46384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46856" e_stop="46777" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46776" i_stop="46700" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46699" e_stop="46384" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46856" stop="46777"/>
              <exon start="46699" stop="46384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46834" stop="46777"/>
              <exon start="46699" stop="46384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTTACCTAATTCAAGATTGGTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATG : GATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</gDNA_template>
            <first_frame> Q  V  T  *  F  K  I  G  I  C  R  Y  I  Q  C  A  T  *  C  H  R  Q  P  S  T  I  W :   I  Q  D  Y  R  Q  G  M  L  R  H  G  E  N  R  S  C  R  V  M  H  I  Y  M  F  Q  *  Y  *  L  Y  F  L  G  *  F  S  S  Y  R  K  S  I  *  T  F  S  S  S  N  S  C  P  T  F  K  *  L  L  L  I  Y  I  P  H  A  *  V  Q  Q  Y  V  F  F  L  K  C  T  Q  R  E  T  E  H  *  S  F  Y  V  L  S  S  L  F  G  L  Q  I  I  I  Q  E  L  Y  * </first_frame>
            <second_frame>  K  L  P  N  S  R  L  V  Y  V  D  T  Y  N  V  L  L  D  V  I  D  N  P  Q  R  Y   : G  F  K  I  T  D  K  G  C  C  G  T  G  K  I  E  V  A  E  L  C  T  Y  T  C  S  S  D  T  D  Y  I  F  W  D  S  F  H  L  T  E  K  A  Y  R  L  L  V  H  Q  I  L  V  Q  H  L  N  S  F  F  *  Y  I  F  H  M  H  K  S  N  N  M  Y  F  F  *  S  V  L  K  E  K  Q  N  I  S  H  S  M  Y  Y  P  H  C  L  V  C  K  *  L  Y  K  N  C  I   </second_frame>
            <third_frame>   S  Y  L  I  Q  D  W  Y  M  *  I  H  T  M  C  Y  L  M  S  S  T  T  L  N  D  M  :  D  S  R  L  Q  T  R  D  A  A  A  R  G  K  *  K  L  Q  S  Y  A  H  I  H  V  P  V  I  L  I  I  F  F  G  I  V  F  I  L  Q  K  K  H  I  D  F  *  F  I  K  F  L  S  N  I  *  I  A  S  S  D  I  Y  S  T  C  I  S  P  T  I  C  I  F  F  K  V  Y  S  K  R  N  R  T  L  V  I  L  C  T  I  L  I  V  W  F  A  N  N  Y  T  R  I  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46855" stop="46777"/>
                    <exon start="46699" stop="46518"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLPNSRLVYVDTYNVLLDVIDNPQRYGFKITDKGCCGTGKIEVAELCTYTCSSDTDYIFWDSFHLTEKAYRLLVHQILVQHLNSFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="48496" PGL_stop="47248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48496" e_stop="48162"/>
            <exon e_start="47568" e_stop="47438"/>
            <exon e_start="47349" e_stop="47248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48496" e_stop="48162" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.984">
            <gDNA_intron_boundary i_start="48161" i_stop="47569" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47568" e_stop="47438" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.988">
            <gDNA_intron_boundary i_start="47437" i_stop="47350" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47349" e_stop="47248" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48162"/>
              <exon start="47568" stop="47438"/>
              <exon start="47349" stop="47248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCATGATTGAGTTTTTGAAGTTAAATAGCATTAGTTCTTGTGTGTTCTTTTCCACCAAAGCTAAAAAGTTTACACTTTTATCAATGAAGTTCTACTTTTACAAGATTTGTTCTTTTTTTGTGTTTTGTATAAGTGTTTGTTATGCAATAAGTCTACCTCCTAATAAGTCTATTCCAGCAGTGTTTGTTTTTGGAGACTCTATTGTTGATACTGGTAATAATAATGGCCTTAAAACTATAGCTAAGGTTAATTATCCTCCTTATGGTAAAGATTTTATGGGAGGAATACCAACTGGAAGGTTTTCTAATGGCAAAGTCCCTTCAGATTTCCTTG : TGGAAGAATTGGGAATAAAAGATCTTTTACCAGCATATCTTGATCCAACTTTACAATCCGAAGACCTTATCACAGGAGTTAATTTTGCTTCAGGAGGTGCAGGATATGATCCTCTAACATCCGAACTCGCT : AAAGTCATCTCATTAGATGGCCAAGTGATACTATTCAAAGAGTACATAGTAAAGCTCACAGAGTTAGTTGGAGAAGATAGAAAGAATGAAATCTTGGCAAAT</gDNA_template>
            <first_frame> Q  H  D  *  V  F  E  V  K  *  H  *  F  L  C  V  L  F  H  Q  S  *  K  V  Y  T  F  I  N  E  V  L  L  L  Q  D  L  F  F  F  C  V  L  Y  K  C  L  L  C  N  K  S  T  S  *  *  V  Y  S  S  S  V  C  F  W  R  L  Y  C  *  Y  W  *  *  *  W  P  *  N  Y  S  *  G  *  L  S  S  L  W  *  R  F  Y  G  R  N  T  N  W  K  V  F  *  W  Q  S  P  F  R  F  P  C :   G  R  I  G  N  K  R  S  F  T  S  I  S  *  S  N  F  T  I  R  R  P  Y  H  R  S  *  F  C  F  R  R  C  R  I  *  S  S  N  I  R  T  R   : *  S  H  L  I  R  W  P  S  D  T  I  Q  R  V  H  S  K  A  H  R  V  S  W  R  R  *  K  E  *  N  L  G  K  </first_frame>
            <second_frame>  S  M  I  E  F  L  K  L  N  S  I  S  S  C  V  F  F  S  T  K  A  K  K  F  T  L  L  S  M  K  F  Y  F  Y  K  I  C  S  F  F  V  F  C  I  S  V  C  Y  A  I  S  L  P  P  N  K  S  I  P  A  V  F  V  F  G  D  S  I  V  D  T  G  N  N  N  G  L  K  T  I  A  K  V  N  Y  P  P  Y  G  K  D  F  M  G  G  I  P  T  G  R  F  S  N  G  K  V  P  S  D  F  L   : V  E  E  L  G  I  K  D  L  L  P  A  Y  L  D  P  T  L  Q  S  E  D  L  I  T  G  V  N  F  A  S  G  G  A  G  Y  D  P  L  T  S  E  L  A  :  K  V  I  S  L  D  G  Q  V  I  L  F  K  E  Y  I  V  K  L  T  E  L  V  G  E  D  R  K  N  E  I  L  A  N </second_frame>
            <third_frame>   A  *  L  S  F  *  S  *  I  A  L  V  L  V  C  S  F  P  P  K  L  K  S  L  H  F  Y  Q  *  S  S  T  F  T  R  F  V  L  F  L  C  F  V  *  V  F  V  M  Q  *  V  Y  L  L  I  S  L  F  Q  Q  C  L  F  L  E  T  L  L  L  I  L  V  I  I  M  A  L  K  L  *  L  R  L  I  I  L  L  M  V  K  I  L  W  E  E  Y  Q  L  E  G  F  L  M  A  K  S  L  Q  I  S  L  :  W  K  N  W  E  *  K  I  F  Y  Q  H  I  L  I  Q  L  Y  N  P  K  T  L  S  Q  E  L  I  L  L  Q  E  V  Q  D  M  I  L  *  H  P  N  S  L :   K  S  S  H  *  M  A  K  *  Y  Y  S  K  S  T  *  *  S  S  Q  S  *  L  E  K  I  E  R  M  K  S  W  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48495" stop="48162"/>
                    <exon start="47568" stop="47438"/>
                    <exon start="47349" stop="47248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMIEFLKLNSISSCVFFSTKAKKFTLLSMKFYFYKICSFFVFCISVCYAISLPPNKSIPAVFVFGDSIVDTGNNNGLKTIAKVNYPPYGKDFMGGIPTGRFSNGKVPSDFLVEELGIKDLLPAYLDPTLQSEDLITGVNFASGGAGYDPLTSELAKVISLDGQVILFKEYIVKLTELVGEDRKNEILAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="52599" PGL_stop="50659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52599" e_stop="52319"/>
            <exon e_start="52221" e_stop="52091"/>
            <exon e_start="51929" e_stop="51693"/>
            <exon e_start="51258" e_stop="51003"/>
            <exon e_start="50905" e_stop="50779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52599" e_stop="52319" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52091" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="51929" e_stop="51693" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51692" i_stop="51259" i_length="434"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51258" e_stop="51003" e_length="256"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="51002" i_stop="50906" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50905" e_stop="50779" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52599" stop="52319"/>
              <exon start="52221" stop="52091"/>
              <exon start="51929" stop="51882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52595" stop="52319"/>
              <exon start="52221" stop="52091"/>
              <exon start="51929" stop="51693"/>
              <exon start="51258" stop="51228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52587" stop="52319"/>
              <exon start="52221" stop="52091"/>
              <exon start="51929" stop="51839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51770" stop="51693"/>
              <exon start="51258" stop="51003"/>
              <exon start="50905" stop="50779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAG : TTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCG : TCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATATTGTTAAAAAGAGTCTTTATATAGTAGTTGCTGGAAGTGATGACCTATGTAATACATATTTCATGCTCAAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT : GATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACG : GTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAA</gDNA_template>
            <first_frame> N  L  Y  I  F  F  T  A  *  N  S  N  N  G  F  I  M  C  C  F  Y  N  V  I  Y  F  M  *  S  K  V  A  I  T  *  G  H  K  Y  N  G  S  F  C  L  W  R  F  N  C  R  S  R  K  *  *  Q  F  N  Y  S  C  K  V  *  F  F  T  L  W  K  R  F  H  G  W  *  *  S  N  W  K  I  *  Q  C  Q  D  T  S  R  H  V  S :   *  R  F  W  D  *  E  A  N  A  S  L  S  R  F  K  F  K  S  *  R  F  K  N  W  S  K  F  C  F  R  S  F  W  I  *  P  F  N  S  C  C  R   : V  S  F  T  T  I  S  T  I  S  T  F  S  T  I  Y  L  E  D  E  W  I  Y  W  *  R  S  N  K  E  Y  C  *  K  E  S  L  Y  S  S  C  W  K  *  *  P  M  *  Y  I  F  H  A  Q  I  S  K  E  N  T  I  Q  C  *  L  I  Y  K  S  Y  G  R  W  S  F  Q  F  Y  Q   : *  F  V  Q  Y  G  S  K  K  N  L  D  I  W  A  S  T  N  R  V  F  A  I  A  N  T  A  R  W  R  S  I  *  N  L  C  Q  R  I  Q  S  S  C  S  N  S  K  Y  Q  I  I  K  *  N  S  F  I  K  Q  K  I  A  S  N  R  A  S  L  Y  Q  Y  L  R  S  S  T  R  Y  Y  R  Q  T  Q  *  I  R :   F  *  R  C  I  E  C  V  L  P  R  K  E  *  V  F  V  M  *  Q  R  Y  K  N  M  R  K  *  C  K  L  F  I  L  G  *  L  S  S  H  *  E </first_frame>
            <second_frame>  I  Y  T  F  F  L  L  H  K  I  V  I  M  A  L  L  C  A  V  F  I  M  L  F  I  S  C  E  A  K  L  Q  L  R  K  D  I  N  I  T  A  L  F  A  F  G  D  S  I  V  D  Q  G  N  N  N  N  L  I  T  H  A  K  C  N  F  L  P  Y  G  K  D  F  M  G  G  N  N  P  T  G  R  F  S  N  A  R  T  P  A  D  M  L   : V  E  D  F  G  I  K  K  L  M  P  A  Y  L  D  S  N  L  K  V  E  D  L  K  T  G  V  S  F  A  S  G  A  S  G  F  D  L  L  T  P  V  V  A  :  S  A  L  P  L  S  V  Q  L  A  L  F  Q  Q  Y  I  W  K  M  N  G  F  I  G  E  E  A  T  K  N  I  V  K  K  S  L  Y  I  V  V  A  G  S  D  D  L  C  N  T  Y  F  M  L  K  F  P  R  K  I  Q  Y  N  V  D  S  Y  T  N  L  M  V  D  G  A  S  N  F  I  N  :  D  L  Y  N  M  G  A  R  R  I  W  I  F  G  L  P  P  I  G  C  L  P  S  Q  I  L  R  G  G  G  P  S  K  I  C  V  N  E  Y  N  Q  A  A  R  I  A  N  T  K  L  S  N  K  I  H  S  L  N  K  K  L  P  Q  I  E  L  L  Y  I  N  I  Y  D  P  L  L  D  I  I  A  K  H  N  K  Y   : G  F  E  D  A  L  S  A  C  C  Q  G  R  N  E  Y  L  L  C  D  N  V  T  K  I  C  E  N  D  A  N  Y  L  F  W  D  S  Y  H  L  T  E   </second_frame>
            <third_frame>   S  I  H  F  F  Y  C  I  K  *  *  *  W  L  Y  Y  V  L  F  L  *  C  Y  L  F  H  V  K  Q  S  C  N  Y  V  R  T  *  I  *  R  L  F  L  P  L  E  I  Q  L  *  I  K  E  I  I  T  I  *  L  L  M  Q  S  V  I  F  Y  L  M  E  K  I  S  W  V  V  I  I  Q  L  E  D  L  A  M  P  G  H  Q  Q  T  C  *  :  L  K  I  L  G  L  R  S  *  C  Q  L  I  *  I  Q  I  *  K  L  K  I  *  K  L  E  *  V  L  L  Q  E  L  L  D  L  T  F  *  L  L  L  S  R :   Q  L  Y  H  Y  Q  Y  N  *  H  F  F  N  N  I  F  G  R  *  M  D  L  L  V  K  K  Q  Q  R  I  L  L  K  R  V  F  I  *  *  L  L  E  V  M  T  Y  V  I  H  I  S  C  S  N  F  Q  G  K  Y  N  T  M  L  T  H  I  Q  I  L  W  *  M  E  L  P  I  L  S  M :   I  C  T  I  W  E  Q  E  E  F  G  Y  L  G  F  H  Q  *  G  V  C  H  R  K  Y  C  E  V  E  V  H  L  K  F  V  S  T  N  T  I  K  L  L  E  *  Q  I  P  N  Y  Q  I  K  F  I  H  *  T  K  N  C  L  K  S  S  F  F  I  S  I  F  T  I  L  Y  S  I  L  S  P  N  T  I  N  T  :  V  L  K  M  H  *  V  R  V  A  K  E  G  M  S  I  C  Y  V  T  T  L  Q  K  Y  A  K  M  M  Q  I  I  Y  F  G  I  V  I  I  S  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52598" stop="52319"/>
                    <exon start="52221" stop="52091"/>
                    <exon start="51929" stop="51693"/>
                    <exon start="51258" stop="51003"/>
                    <exon start="50905" stop="50781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTFFLLHKIVIMALLCAVFIMLFISCEAKLQLRKDINITALFAFGDSIVDQGNNNNLITHAKCNFLPYGKDFMGGNNPTGRFSNARTPADMLVEDFGIKKLMPAYLDSNLKVEDLKTGVSFASGASGFDLLTPVVASALPLSVQLALFQQYIWKMNGFIGEEATKNIVKKSLYIVVAGSDDLCNTYFMLKFPRKIQYNVDSYTNLMVDGASNFINDLYNMGARRIWIFGLPPIGCLPSQILRGGGPSKICVNEYNQAARIANTKLSNKIHSLNKKLPQIELLYINIYDPLLDIIAKHNKYGFEDALSACCQGRNEYLLCDNVTKICENDANYLFWDSYHLTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52599" e_stop="52319"/>
            <exon e_start="52221" e_stop="52091"/>
            <exon e_start="51929" e_stop="51693"/>
            <exon e_start="50905" e_stop="50659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.967" e_score="0.987"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52599" e_stop="52319" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52091" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="51929" e_stop="51693" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.967">
            <gDNA_intron_boundary i_start="51692" i_stop="50906" i_length="787"/>
          </intron>
          <exon e_serial="4" e_score="0.891">
            <gDNA_exon_boundary e_start="50905" e_stop="50659" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52599" stop="52319"/>
              <exon start="52221" stop="52091"/>
              <exon start="51929" stop="51882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52587" stop="52319"/>
              <exon start="52221" stop="52091"/>
              <exon start="51929" stop="51839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52185" stop="52091"/>
              <exon start="51929" stop="51693"/>
              <exon start="50905" stop="50659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAG : TTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCG : TCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATATTGTTAAAAAGAGTCTTTATATAGTAGTTGCTGGAAGTGATGACCTATGTAATACATATTTCATGCTCAAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT : GTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAAAGGTTATAGGGTTCTTCTTGATCAAATTTCCAACTAATAGTCTTATTGTACTAAACATGAATTATATATTAAGATTTGATTATCTAGTTAATAATAATTCGATTAATTTAAAGCTGAAAA</gDNA_template>
            <first_frame> N  L  Y  I  F  F  T  A  *  N  S  N  N  G  F  I  M  C  C  F  Y  N  V  I  Y  F  M  *  S  K  V  A  I  T  *  G  H  K  Y  N  G  S  F  C  L  W  R  F  N  C  R  S  R  K  *  *  Q  F  N  Y  S  C  K  V  *  F  F  T  L  W  K  R  F  H  G  W  *  *  S  N  W  K  I  *  Q  C  Q  D  T  S  R  H  V  S :   *  R  F  W  D  *  E  A  N  A  S  L  S  R  F  K  F  K  S  *  R  F  K  N  W  S  K  F  C  F  R  S  F  W  I  *  P  F  N  S  C  C  R   : V  S  F  T  T  I  S  T  I  S  T  F  S  T  I  Y  L  E  D  E  W  I  Y  W  *  R  S  N  K  E  Y  C  *  K  E  S  L  Y  S  S  C  W  K  *  *  P  M  *  Y  I  F  H  A  Q  I  S  K  E  N  T  I  Q  C  *  L  I  Y  K  S  Y  G  R  W  S  F  Q  F  Y  Q   : C  F  E  D  A  L  S  A  C  C  Q  G  R  N  E  Y  L  L  C  D  N  V  T  K  I  C  E  N  D  A  N  Y  L  F  W  D  S  Y  H  L  T  E  K  G  Y  R  V  L  L  D  Q  I  S  N  *  *  S  Y  C  T  K  H  E  L  Y  I  K  I  *  L  S  S  *  *  *  F  D  *  F  K  A  E   </first_frame>
            <second_frame>  I  Y  T  F  F  L  L  H  K  I  V  I  M  A  L  L  C  A  V  F  I  M  L  F  I  S  C  E  A  K  L  Q  L  R  K  D  I  N  I  T  A  L  F  A  F  G  D  S  I  V  D  Q  G  N  N  N  N  L  I  T  H  A  K  C  N  F  L  P  Y  G  K  D  F  M  G  G  N  N  P  T  G  R  F  S  N  A  R  T  P  A  D  M  L   : V  E  D  F  G  I  K  K  L  M  P  A  Y  L  D  S  N  L  K  V  E  D  L  K  T  G  V  S  F  A  S  G  A  S  G  F  D  L  L  T  P  V  V  A  :  S  A  L  P  L  S  V  Q  L  A  L  F  Q  Q  Y  I  W  K  M  N  G  F  I  G  E  E  A  T  K  N  I  V  K  K  S  L  Y  I  V  V  A  G  S  D  D  L  C  N  T  Y  F  M  L  K  F  P  R  K  I  Q  Y  N  V  D  S  Y  T  N  L  M  V  D  G  A  S  N  F  I  N  :  V  L  K  M  H  *  V  R  V  A  K  E  G  M  S  I  C  Y  V  T  T  L  Q  K  Y  A  K  M  M  Q  I  I  Y  F  G  I  V  I  I  S  L  R  K  V  I  G  F  F  L  I  K  F  P  T  N  S  L  I  V  L  N  M  N  Y  I  L  R  F  D  Y  L  V  N  N  N  S  I  N  L  K  L  K  </second_frame>
            <third_frame>   S  I  H  F  F  Y  C  I  K  *  *  *  W  L  Y  Y  V  L  F  L  *  C  Y  L  F  H  V  K  Q  S  C  N  Y  V  R  T  *  I  *  R  L  F  L  P  L  E  I  Q  L  *  I  K  E  I  I  T  I  *  L  L  M  Q  S  V  I  F  Y  L  M  E  K  I  S  W  V  V  I  I  Q  L  E  D  L  A  M  P  G  H  Q  Q  T  C  *  :  L  K  I  L  G  L  R  S  *  C  Q  L  I  *  I  Q  I  *  K  L  K  I  *  K  L  E  *  V  L  L  Q  E  L  L  D  L  T  F  *  L  L  L  S  R :   Q  L  Y  H  Y  Q  Y  N  *  H  F  F  N  N  I  F  G  R  *  M  D  L  L  V  K  K  Q  Q  R  I  L  L  K  R  V  F  I  *  *  L  L  E  V  M  T  Y  V  I  H  I  S  C  S  N  F  Q  G  K  Y  N  T  M  L  T  H  I  Q  I  L  W  *  M  E  L  P  I  L  S  M :   F  *  R  C  I  E  C  V  L  P  R  K  E  *  V  F  V  M  *  Q  R  Y  K  N  M  R  K  *  C  K  L  F  I  L  G  *  L  S  S  H  *  E  R  L  *  G  S  S  *  S  N  F  Q  L  I  V  L  L  Y  *  T  *  I  I  Y  *  D  L  I  I  *  L  I  I  I  R  L  I  *  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52598" stop="52319"/>
                    <exon start="52221" stop="52091"/>
                    <exon start="51929" stop="51693"/>
                    <exon start="50905" stop="50888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTFFLLHKIVIMALLCAVFIMLFISCEAKLQLRKDINITALFAFGDSIVDQGNNNNLITHAKCNFLPYGKDFMGGNNPTGRFSNARTPADMLVEDFGIKKLMPAYLDSNLKVEDLKTGVSFASGASGFDLLTPVVASALPLSVQLALFQQYIWKMNGFIGEEATKNIVKKSLYIVVAGSDDLCNTYFMLKFPRKIQYNVDSYTNLMVDGASNFINVLKMH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50887" stop="50660"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRVAKEGMSICYVTTLQKYAKMMQIIYFGIVIISLRKVIGFFLIKFPTNSLIVLNMNYILRFDYLVNNNSINLKLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="55219" PGL_stop="54158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55219" e_stop="55186"/>
            <exon e_start="55020" e_stop="54765"/>
            <exon e_start="54501" e_stop="54158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55219" e_stop="55186" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55185" i_stop="55021" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55020" e_stop="54765" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54764" i_stop="54502" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54501" e_stop="54158" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55219" stop="55186"/>
              <exon start="55020" stop="54765"/>
              <exon start="54501" stop="54158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55219" stop="55186"/>
              <exon start="55020" stop="54765"/>
              <exon start="54501" stop="54163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55218" stop="55186"/>
              <exon start="55020" stop="54765"/>
              <exon start="54501" stop="54189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAA : GAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATG : GATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCATGTCAA</gDNA_template>
            <first_frame> S  H  G  V  Q  S  Y  *  I  F  P   : R  I  V  Q  L  G  S  K  K  N  W  D  I  W  N  S  S  H  R  M  F  A  I  T  K  N  I  S  W  W  A  K  *  S  M  C  Q  G  I  Q  *  S  S  P  I  G  *  H  K  I  L  N  C  H  *  F  T  I  K  K  V  G  P  I  Q  T  C  V  D  R  Y  L  *  S  F  S  *  Y  H  C  Q  P  S  K  I  W :   I  R  R  S  R  E  R  V  L  W  H  R  K  Y  *  G  D  N  I  M  *  *  I  Q  W  N  M  *  R  *  Y  K  I  F  I  L  G  *  F  S  S  N  *  E  R  L  *  D  S  C  *  S  N  I  E  K  I  C  Q  *  I  F  V  D  D  E  L  N  Q  D  Q  D  Y  V  S  P  N  L  Y  S  L  D  Q  R  S  K  L  F  F  V  Q  L  I  V  H  L  Y  T  S  K  C  L  C  W  N  L  I  K  K  I  L  F  M  S  </first_frame>
            <second_frame>  L  M  V  S  K  A  T  E  F  F  Q  :  E  L  Y  N  L  G  A  R  K  I  G  I  F  G  I  P  P  I  G  C  L  P  S  Q  R  T  L  A  G  G  P  N  R  V  C  A  K  E  Y  N  E  A  A  Q  L  A  N  T  K  F  S  I  A  I  D  S  L  S  K  K  L  A  Q  S  K  L  V  L  I  D  I  Y  N  P  F  L  D  I  I  V  N  P  Q  K  Y   : G  L  E  E  V  E  K  G  C  C  G  T  G  N  I  E  V  T  I  L  C  N  K  F  S  G  T  C  E  D  D  T  K  Y  L  F  W  D  S  F  H  P  T  E  K  G  Y  R  I  L  V  D  Q  I  L  K  K  Y  V  N  R  F  L  *  M  M  S  S  I  K  I  K  I  M  Y  H  Q  I  C  I  V  W  I  K  G  P  N  F  F  L  F  N  *  *  F  I  Y  T  H  P  S  V  Y  V  G  I  *  *  K  K  Y  C  S  C  Q </second_frame>
            <third_frame>   S  W  C  P  K  L  L  N  F  S  K :   N  C  T  T  W  E  Q  E  K  L  G  Y  L  E  F  L  P  *  D  V  C  H  H  K  E  H  *  L  V  G  Q  I  E  Y  V  P  R  N  T  M  K  Q  P  N  W  L  T  Q  N  S  Q  L  P  L  I  H  Y  Q  K  S  W  P  N  P  N  L  C  *  *  I  S  I  I  L  F  L  I  S  L  S  T  L  K  N  M  :  D  *  K  K  *  R  K  G  V  V  A  Q  E  I  L  R  *  Q  Y  Y  V  I  N  S  V  E  H  V  K  M  I  Q  N  I  Y  F  G  I  V  F  I  Q  L  R  K  V  I  G  F  L  L  I  K  Y  *  K  N  M  S  I  D  F  C  R  *  *  A  Q  S  R  S  R  L  C  I  T  K  F  V  *  F  G  S  K  V  Q  T  F  F  C  S  I  N  S  S  F  I  H  I  Q  V  F  M  L  E  S  N  K  K  N  I  V  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55218" stop="55186"/>
                    <exon start="55020" stop="54765"/>
                    <exon start="54501" stop="54311"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMVSKATEFFQELYNLGARKIGIFGIPPIGCLPSQRTLAGGPNRVCAKEYNEAAQLANTKFSIAIDSLSKKLAQSKLVLIDIYNPFLDIIVNPQKYGLEEVEKGCCGTGNIEVTILCNKFSGTCEDDTKYLFWDSFHPTEKGYRILVDQILKKYVNRFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="72698" PGL_stop="62182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72698" e_stop="72123"/>
            <exon e_start="71020" e_stop="70934"/>
            <exon e_start="70439" e_stop="70308"/>
            <exon e_start="68580" e_stop="68449"/>
            <exon e_start="66574" e_stop="66509"/>
            <exon e_start="66168" e_stop="66058"/>
            <exon e_start="65777" e_stop="65685"/>
            <exon e_start="65038" e_stop="65005"/>
            <exon e_start="64904" e_stop="64837"/>
            <exon e_start="64734" e_stop="64373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.573" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72123" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71020" e_stop="70934" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70439" e_stop="70308" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68580" e_stop="68449" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66574" e_stop="66509" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.573">
            <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66168" e_stop="66058" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65777" e_stop="65685" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65038" e_stop="65005" e_length="34"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.840">
            <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64904" e_stop="64837" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64734" e_stop="64373" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72698" stop="72381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72461" stop="72123"/>
              <exon start="71020" stop="70943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72440" stop="72123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72433" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72428" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72405" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72370" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72241" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70977" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70408" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70408" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70407" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70391" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68500" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425477" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68480" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66532" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66083" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65774" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG : ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG : GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG : TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG : GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG : CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG : GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG : GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG : GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG : GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAACCCTTGTCCTT</gDNA_template>
            <first_frame> F  E  S  H  G  A  Y  Q  N  P  V  H  S  Q  P  Q  Q  P  Y  Y  P  P  Y  D  Q  P  Q  A  A  P  S  Y  N  H  S  T  T  P  N  S  S  Y  P  S  V  Y  S  T  P  N  Y  D  N  T  G  K  F  D  Q  S  G  Q  Y  F  D  E  P  V  D  K  Y  G  N  Y  G  S  G  R  G  E  F  G  Q  D  T  Y  G  K  R  A  E  S  G  Y  G  N  D  G  Y  G  D  G  V  F  A  Y  Q  G  S  K  V  E  P  Y  G  A  R  G  T  G  S  K  S  S  T  W  S  S  S  F  D  D  F  G  R  P  I  G  Y  N  S  P  K  E  R  S  S  A  P  T  A  K  I  V  K  A  I  P  K  V  D  T  Q  Q  D  A  K  S  G  V  Q  K  F  R  V  K  L  L  A  E  S  G  G  Q  S  T  Q  D  V  L  C  Q  :  I  G  L  D  G  I  R  M  L  D  P  S  T  S  R  M  L  R  I  Y  P  L  D  T  V  T  R  L  E  :  A  T  D  S  S  T  F  A  F  W  S  K  S  A  V  D  I  E  P  R  R  I  R  L  Q  S  N  S  Y  T  T  S  S  L  L  D  T  V  T  A  A  V  V  Q  :  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K  D  H  W  :  V  P  D  E  A  V  S  K  C  T  A  C  G  S  A  F  N  A  F  V  R  R  :  H  H  C  R  N  C  G  D  I  F  C  D  K  C  T  Q  G  R  T  A  L  T  A  D  E  N  A  P  V  V  R  V  C  D  R  C  T  :  A  E  V  S  R  R  L  S  S  A  K  E  T  V  N  R  S  T  G  L  Q  S  H  E  D  L  A  K  K  L  Q  :  E  E  M  E  R  N  R  K  G  S  S   : G  S  R  Q  D  R  S  G  R  M  K  E  V  A  C  P  T  C  T  V  H  L  Q  :  V  Q  V  P  S  S  G  S  E  T  I  E  C  G  V  C  Q  N  P  F  L  V  S  S  H  *  F  *  C  F  P  S  M  E  G  K  T  A  N  S  F  L  V  F  V  C  S  R  T  L  F  R  A  S  V  N  I  *  T  V  C  D  A  P  L  V  G  C  L  I  L  V  S  W  Q  G  N  L  L  I  *  F  V  L  A  G  R  N  L  T  L  F  F  F  F  T  W  R  K  Y  K  *  I  *  F  Q  *  L  K  F  K  S  I  *  F  L  K  P  L  S   </first_frame>
            <second_frame>  L  N  P  T  E  L  I  K  I  Q  F  I  L  S  L  N  N  L  I  I  L  L  T  I  N  P  R  L  L  L  V  T  I  I  V  P  L  R  I  L  R  I  L  Q  F  I  Q  L  Q  I  M  I  I  L  G  S  L  I  K  V  D  S  I  L  M  N  L  W  I  S  M  G  I  M  V  R  G  E  V  N  L  G  K  I  L  M  G  N  E  L  K  V  D  M  V  M  M  V  M  A  M  G  C  L  L  I  R  V  V  K  *  S  L  M  G  H  E  G  L  V  Q  S  L  R  L  G  R  L  V  L  M  I  L  G  G  Q  L  G  I  I  L  R  K  N  V  H  Q  L  Q  L  Q  R  S  S  R  Q  F  P  R  L  I  R  S  R  M  R  K  V  V  F  R  S  L  G  *  S  Y  *  L  K  V  V  D  R  V  P  R  M  F  F  A  R :   L  A  W  M  E  S  A  C  W  T  Q  A  L  A  G  C  *  E  F  I  L  L  T  R  *  L  D  L  R :   R  R  I  H  L  P  L  P  S  G  Q  K  V  Q  W  I  *  N  Q  G  V  S  D  C  S  R  T  V  T  Q  P  V  P  C  *  I  Q  S  R  L  R  L  Y  S :   S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  I  T  G :   F  L  M  K  Q  F  P  S  A  Q  L  V  D  Q  P  S  M  L  L  C  A  G :   I  T  V  G  I  V  E  I  F  S  V  T  N  A  L  R  E  E  L  H  *  Q  L  M  R  M  H  Q  L  L  E  F  V  T  D  V  R :   L  R  F  L  V  G  *  A  A  R  R  K  L  S  I  D  Q  L  D  C  K  V  M  K  T  L  P  R  S  F  R :   R  R  W  R  E  T  E  K  D  H  L  :  A  L  D  K  I  V  R  G  G  *  K  R  L  L  A  L  L  V  Q  Y  I  C  R :   F  K  F  R  A  Q  V  P  R  L  *  N  V  V  F  A  R  I  H  S  S  L  V  R  T  D  F  D  V  F  R  Q  W  K  E  R  L  Q  T  L  F  W  F  L  C  V  L  V  H  C  F  V  H  L  L  I  F  E  P  F  V  T  R  L  W  L  V  A  *  S  L  F  P  G  K  A  I  C  S  F  D  L  Y  *  Q  E  E  I  *  H  F  F  F  S  L  H  G  E  N  I  S  E  F  D  S  S  N  S  S  L  N  Q  F  D  F  L  N  P  C  P  </second_frame>
            <third_frame>   *  I  P  R  S  L  S  K  S  S  S  F  S  A  S  T  T  L  L  S  S  L  R  S  T  P  G  C  S  *  L  Q  S  *  Y  H  S  E  F  F  V  S  F  S  L  F  N  S  K  L  *  *  Y  W  E  V  *  S  K  W  T  V  F  *  *  T  C  G  *  V  W  E  L  W  F  G  E  R  *  I  W  A  R  Y  L  W  E  T  S  *  K  W  I  W  *  *  W  L  W  R  W  G  V  C  L  S  G  *  *  S  R  A  L  W  G  T  R  D  W  F  K  V  F  D  L  V  V  *  F  *  *  F  W  E  A  N  W  V  *  F  S  E  R  T  F  I  S  S  N  C  K  D  R  Q  G  N  S  Q  G  *  Y  A  A  G  C  E  K  W  C  S  E  V  *  G  E  V  I  S  *  K  W  W  T  E  Y  P  G  C  S  L  P   : D  W  L  G  W  N  P  H  V  G  P  K  H  *  P  D  V  K  N  L  S  S  *  H  G  N  *  T  *   : G  D  G  F  I  Y  L  C  L  L  V  K  K  C  S  G  Y  R  T  K  A  Y  Q  T  A  V  E  Q  L  H  N  Q  F  P  V  R  Y  S  H  G  C  G  C  T   : V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R  S  L   : G  S  *  *  S  S  F  Q  V  H  S  L  W  I  S  L  Q  C  F  C  A  Q   : A  S  L  S  E  L  W  R  Y  F  L  *  Q  M  H  S  G  K  N  C  T  D  S  *  *  E  C  T  S  C  *  S  L  *  P  M  Y   : G  *  G  F  S  S  A  K  Q  R  E  G  N  C  Q  *  I  N  W  I  A  K  S  *  R  P  C  Q  E  A  S   : G  G  D  G  E  K  P  K  R  I  I  W :   L  *  T  R  S  F  G  E  D  E  R  G  C  L  P  Y  L  Y  S  T  F  A   : G  S  S  S  E  L  R  F  R  D  Y  R  M  W  C  L  P  E  S  I  P  R  *  F  A  L  I  L  M  F  S  V  N  G  R  K  D  C  K  L  F  S  G  F  C  V  F  S  Y  I  V  S  C  I  C  *  Y  L  N  R  L  *  R  A  F  G  W  L  L  D  P  C  F  L  A  R  Q  F  A  H  L  I  C  I  S  R  K  K  S  N  T  F  F  F  L  Y  M  E  K  I  *  V  N  L  I  P  V  T  Q  V  *  I  N  L  I  S  *  T  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72698" stop="72123"/>
                    <exon start="71020" stop="70934"/>
                    <exon start="70439" stop="70308"/>
                    <exon start="68580" stop="68449"/>
                    <exon start="66574" stop="66509"/>
                    <exon start="66168" stop="66058"/>
                    <exon start="65777" stop="65685"/>
                    <exon start="65038" stop="65005"/>
                    <exon start="64904" stop="64837"/>
                    <exon start="64734" stop="64657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FESHGAYQNPVHSQPQQPYYPPYDQPQAAPSYNHSTTPNSSYPSVYSTPNYDNTGKFDQSGQYFDEPVDKYGNYGSGRGEFGQDTYGKRAESGYGNDGYGDGVFAYQGSKVEPYGARGTGSKSSTWSSSFDDFGRPIGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGLDGIRMLDPSTSRMLRIYPLDTVTRLEATDSSTFAFWSKSAVDIEPRRIRLQSNSYTTSSLLDTVTAAVVQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDHWVPDEAVSKCTACGSAFNAFVRRHHCRNCGDIFCDKCTQGRTALTADENAPVVRVCDRCTAEVSRRLSSAKETVNRSTGLQSHEDLAKKLQEEMERNRKGSSGSRQDRSGRMKEVACPTCTVHLQVQVPSSGSETIECGVCQNPFLVSSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72698" e_stop="72123"/>
            <exon e_start="71020" e_stop="70934"/>
            <exon e_start="70439" e_stop="70308"/>
            <exon e_start="68580" e_stop="68449"/>
            <exon e_start="66574" e_stop="66509"/>
            <exon e_start="66168" e_stop="66058"/>
            <exon e_start="65777" e_stop="65685"/>
            <exon e_start="65038" e_stop="65005"/>
            <exon e_start="64904" e_stop="64837"/>
            <exon e_start="64734" e_stop="64383"/>
            <exon e_start="63342" e_stop="63315"/>
            <exon e_start="62192" e_stop="62182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.573" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.336" acc_prob="0.959" e_score="0.500"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72123" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71020" e_stop="70934" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70439" e_stop="70308" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68580" e_stop="68449" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66574" e_stop="66509" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.573">
            <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66168" e_stop="66058" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65777" e_stop="65685" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65038" e_stop="65005" e_length="34"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.840">
            <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64904" e_stop="64837" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64734" e_stop="64383" e_length="352"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="64382" i_stop="63343" i_length="1040"/>
          </intron>
          <exon e_serial="11" e_score="0.500">
            <gDNA_exon_boundary e_start="63342" e_stop="63315" e_length="28"/>
          </exon>
          <intron i_serial="11" don_prob="0.336" acc_prob="0.959">
            <gDNA_intron_boundary i_start="63314" i_stop="62193" i_length="1122"/>
          </intron>
          <exon e_serial="12" e_score="0.455">
            <gDNA_exon_boundary e_start="62192" e_stop="62182" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72698" stop="72381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72461" stop="72123"/>
              <exon start="71020" stop="70943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72440" stop="72123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72433" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72428" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72405" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72370" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72241" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70977" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70408" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70408" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70407" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68480" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66566" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64383"/>
              <exon start="63342" stop="63315"/>
              <exon start="62192" stop="62182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418221" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66532" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66083" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280673" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG : ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG : GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG : TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG : GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG : CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG : GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG : GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG : GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG : GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAAC : AAAATTGAATTTCTCCACAATAACGCAT : GGAAAGTGCAA</gDNA_template>
            <first_frame> F  E  S  H  G  A  Y  Q  N  P  V  H  S  Q  P  Q  Q  P  Y  Y  P  P  Y  D  Q  P  Q  A  A  P  S  Y  N  H  S  T  T  P  N  S  S  Y  P  S  V  Y  S  T  P  N  Y  D  N  T  G  K  F  D  Q  S  G  Q  Y  F  D  E  P  V  D  K  Y  G  N  Y  G  S  G  R  G  E  F  G  Q  D  T  Y  G  K  R  A  E  S  G  Y  G  N  D  G  Y  G  D  G  V  F  A  Y  Q  G  S  K  V  E  P  Y  G  A  R  G  T  G  S  K  S  S  T  W  S  S  S  F  D  D  F  G  R  P  I  G  Y  N  S  P  K  E  R  S  S  A  P  T  A  K  I  V  K  A  I  P  K  V  D  T  Q  Q  D  A  K  S  G  V  Q  K  F  R  V  K  L  L  A  E  S  G  G  Q  S  T  Q  D  V  L  C  Q  :  I  G  L  D  G  I  R  M  L  D  P  S  T  S  R  M  L  R  I  Y  P  L  D  T  V  T  R  L  E  :  A  T  D  S  S  T  F  A  F  W  S  K  S  A  V  D  I  E  P  R  R  I  R  L  Q  S  N  S  Y  T  T  S  S  L  L  D  T  V  T  A  A  V  V  Q  :  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K  D  H  W  :  V  P  D  E  A  V  S  K  C  T  A  C  G  S  A  F  N  A  F  V  R  R  :  H  H  C  R  N  C  G  D  I  F  C  D  K  C  T  Q  G  R  T  A  L  T  A  D  E  N  A  P  V  V  R  V  C  D  R  C  T  :  A  E  V  S  R  R  L  S  S  A  K  E  T  V  N  R  S  T  G  L  Q  S  H  E  D  L  A  K  K  L  Q  :  E  E  M  E  R  N  R  K  G  S  S   : G  S  R  Q  D  R  S  G  R  M  K  E  V  A  C  P  T  C  T  V  H  L  Q  :  V  Q  V  P  S  S  G  S  E  T  I  E  C  G  V  C  Q  N  P  F  L  V  S  S  H  *  F  *  C  F  P  S  M  E  G  K  T  A  N  S  F  L  V  F  V  C  S  R  T  L  F  R  A  S  V  N  I  *  T  V  C  D  A  P  L  V  G  C  L  I  L  V  S  W  Q  G  N  L  L  I  *  F  V  L  A  G  R  N  L  T  L  F  F  F  F  T  W  R  K  Y  K  *  I  *  F  Q  *  L  K  F  K  S  I  *  F  L  K   : Q  N  *  I  S  P  Q  *  R  M :   E  S  A  </first_frame>
            <second_frame>  L  N  P  T  E  L  I  K  I  Q  F  I  L  S  L  N  N  L  I  I  L  L  T  I  N  P  R  L  L  L  V  T  I  I  V  P  L  R  I  L  R  I  L  Q  F  I  Q  L  Q  I  M  I  I  L  G  S  L  I  K  V  D  S  I  L  M  N  L  W  I  S  M  G  I  M  V  R  G  E  V  N  L  G  K  I  L  M  G  N  E  L  K  V  D  M  V  M  M  V  M  A  M  G  C  L  L  I  R  V  V  K  *  S  L  M  G  H  E  G  L  V  Q  S  L  R  L  G  R  L  V  L  M  I  L  G  G  Q  L  G  I  I  L  R  K  N  V  H  Q  L  Q  L  Q  R  S  S  R  Q  F  P  R  L  I  R  S  R  M  R  K  V  V  F  R  S  L  G  *  S  Y  *  L  K  V  V  D  R  V  P  R  M  F  F  A  R :   L  A  W  M  E  S  A  C  W  T  Q  A  L  A  G  C  *  E  F  I  L  L  T  R  *  L  D  L  R :   R  R  I  H  L  P  L  P  S  G  Q  K  V  Q  W  I  *  N  Q  G  V  S  D  C  S  R  T  V  T  Q  P  V  P  C  *  I  Q  S  R  L  R  L  Y  S :   S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  I  T  G :   F  L  M  K  Q  F  P  S  A  Q  L  V  D  Q  P  S  M  L  L  C  A  G :   I  T  V  G  I  V  E  I  F  S  V  T  N  A  L  R  E  E  L  H  *  Q  L  M  R  M  H  Q  L  L  E  F  V  T  D  V  R :   L  R  F  L  V  G  *  A  A  R  R  K  L  S  I  D  Q  L  D  C  K  V  M  K  T  L  P  R  S  F  R :   R  R  W  R  E  T  E  K  D  H  L  :  A  L  D  K  I  V  R  G  G  *  K  R  L  L  A  L  L  V  Q  Y  I  C  R :   F  K  F  R  A  Q  V  P  R  L  *  N  V  V  F  A  R  I  H  S  S  L  V  R  T  D  F  D  V  F  R  Q  W  K  E  R  L  Q  T  L  F  W  F  L  C  V  L  V  H  C  F  V  H  L  L  I  F  E  P  F  V  T  R  L  W  L  V  A  *  S  L  F  P  G  K  A  I  C  S  F  D  L  Y  *  Q  E  E  I  *  H  F  F  F  S  L  H  G  E  N  I  S  E  F  D  S  S  N  S  S  L  N  Q  F  D  F  L  N  :  K  I  E  F  L  H  N  N  A   : W  K  V  Q </second_frame>
            <third_frame>   *  I  P  R  S  L  S  K  S  S  S  F  S  A  S  T  T  L  L  S  S  L  R  S  T  P  G  C  S  *  L  Q  S  *  Y  H  S  E  F  F  V  S  F  S  L  F  N  S  K  L  *  *  Y  W  E  V  *  S  K  W  T  V  F  *  *  T  C  G  *  V  W  E  L  W  F  G  E  R  *  I  W  A  R  Y  L  W  E  T  S  *  K  W  I  W  *  *  W  L  W  R  W  G  V  C  L  S  G  *  *  S  R  A  L  W  G  T  R  D  W  F  K  V  F  D  L  V  V  *  F  *  *  F  W  E  A  N  W  V  *  F  S  E  R  T  F  I  S  S  N  C  K  D  R  Q  G  N  S  Q  G  *  Y  A  A  G  C  E  K  W  C  S  E  V  *  G  E  V  I  S  *  K  W  W  T  E  Y  P  G  C  S  L  P   : D  W  L  G  W  N  P  H  V  G  P  K  H  *  P  D  V  K  N  L  S  S  *  H  G  N  *  T  *   : G  D  G  F  I  Y  L  C  L  L  V  K  K  C  S  G  Y  R  T  K  A  Y  Q  T  A  V  E  Q  L  H  N  Q  F  P  V  R  Y  S  H  G  C  G  C  T   : V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R  S  L   : G  S  *  *  S  S  F  Q  V  H  S  L  W  I  S  L  Q  C  F  C  A  Q   : A  S  L  S  E  L  W  R  Y  F  L  *  Q  M  H  S  G  K  N  C  T  D  S  *  *  E  C  T  S  C  *  S  L  *  P  M  Y   : G  *  G  F  S  S  A  K  Q  R  E  G  N  C  Q  *  I  N  W  I  A  K  S  *  R  P  C  Q  E  A  S   : G  G  D  G  E  K  P  K  R  I  I  W :   L  *  T  R  S  F  G  E  D  E  R  G  C  L  P  Y  L  Y  S  T  F  A   : G  S  S  S  E  L  R  F  R  D  Y  R  M  W  C  L  P  E  S  I  P  R  *  F  A  L  I  L  M  F  S  V  N  G  R  K  D  C  K  L  F  S  G  F  C  V  F  S  Y  I  V  S  C  I  C  *  Y  L  N  R  L  *  R  A  F  G  W  L  L  D  P  C  F  L  A  R  Q  F  A  H  L  I  C  I  S  R  K  K  S  N  T  F  F  F  L  Y  M  E  K  I  *  V  N  L  I  P  V  T  Q  V  *  I  N  L  I  S  *  T :   K  L  N  F  S  T  I  T  H  :  G  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72698" stop="72123"/>
                    <exon start="71020" stop="70934"/>
                    <exon start="70439" stop="70308"/>
                    <exon start="68580" stop="68449"/>
                    <exon start="66574" stop="66509"/>
                    <exon start="66168" stop="66058"/>
                    <exon start="65777" stop="65685"/>
                    <exon start="65038" stop="65005"/>
                    <exon start="64904" stop="64837"/>
                    <exon start="64734" stop="64657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FESHGAYQNPVHSQPQQPYYPPYDQPQAAPSYNHSTTPNSSYPSVYSTPNYDNTGKFDQSGQYFDEPVDKYGNYGSGRGEFGQDTYGKRAESGYGNDGYGDGVFAYQGSKVEPYGARGTGSKSSTWSSSFDDFGRPIGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGLDGIRMLDPSTSRMLRIYPLDTVTRLEATDSSTFAFWSKSAVDIEPRRIRLQSNSYTTSSLLDTVTAAVVQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDHWVPDEAVSKCTACGSAFNAFVRRHHCRNCGDIFCDKCTQGRTALTADENAPVVRVCDRCTAEVSRRLSSAKETVNRSTGLQSHEDLAKKLQEEMERNRKGSSGSRQDRSGRMKEVACPTCTVHLQVQVPSSGSETIECGVCQNPFLVSSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72698" e_stop="72123"/>
            <exon e_start="71020" e_stop="70934"/>
            <exon e_start="70439" e_stop="70308"/>
            <exon e_start="68580" e_stop="68457"/>
            <exon e_start="65730" e_stop="65685"/>
            <exon e_start="65038" e_stop="65005"/>
            <exon e_start="64904" e_stop="64837"/>
            <exon e_start="64734" e_stop="64493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72123" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71020" e_stop="70934" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70439" e_stop="70308" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="68580" e_stop="68457" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68456" i_stop="65731" i_length="2726"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65730" e_stop="65685" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65038" e_stop="65005" e_length="34"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.840">
            <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64904" e_stop="64837" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102"/>
          </intron>
          <exon e_serial="8" e_score="0.930">
            <gDNA_exon_boundary e_start="64734" e_stop="64493" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72698" stop="72381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72461" stop="72123"/>
              <exon start="71020" stop="70943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72440" stop="72123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72433" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72405" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72291" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68457"/>
              <exon start="65730" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG : ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG : GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG : TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAG : ATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG : GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG : GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG : GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTG</gDNA_template>
            <first_frame> F  E  S  H  G  A  Y  Q  N  P  V  H  S  Q  P  Q  Q  P  Y  Y  P  P  Y  D  Q  P  Q  A  A  P  S  Y  N  H  S  T  T  P  N  S  S  Y  P  S  V  Y  S  T  P  N  Y  D  N  T  G  K  F  D  Q  S  G  Q  Y  F  D  E  P  V  D  K  Y  G  N  Y  G  S  G  R  G  E  F  G  Q  D  T  Y  G  K  R  A  E  S  G  Y  G  N  D  G  Y  G  D  G  V  F  A  Y  Q  G  S  K  V  E  P  Y  G  A  R  G  T  G  S  K  S  S  T  W  S  S  S  F  D  D  F  G  R  P  I  G  Y  N  S  P  K  E  R  S  S  A  P  T  A  K  I  V  K  A  I  P  K  V  D  T  Q  Q  D  A  K  S  G  V  Q  K  F  R  V  K  L  L  A  E  S  G  G  Q  S  T  Q  D  V  L  C  Q  :  I  G  L  D  G  I  R  M  L  D  P  S  T  S  R  M  L  R  I  Y  P  L  D  T  V  T  R  L  E  :  A  T  D  S  S  T  F  A  F  W  S  K  S  A  V  D  I  E  P  R  R  I  R  L  Q  S  N  S  Y  T  T  S  S  L  L  D  T  V  T  A  A  V  V  Q  :  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K   : D  Q  L  D  C  K  V  M  K  T  L  P  R  S  F  R :   R  R  W  R  E  T  E  K  D  H  L  :  A  L  D  K  I  V  R  G  G  *  K  R  L  L  A  L  L  V  Q  Y  I  C  R :   F  K  F  R  A  Q  V  P  R  L  *  N  V  V  F  A  R  I  H  S  S  L  V  R  T  D  F  D  V  F  R  Q  W  K  E  R  L  Q  T  L  F  W  F  L  C  V  L  V  H  C  F  V  H  L  L  I  F  E  P  F  V  T  R  L  W  L  V  A  *  S  L  F  P  G  K  A  I  C  S  F  </first_frame>
            <second_frame>  L  N  P  T  E  L  I  K  I  Q  F  I  L  S  L  N  N  L  I  I  L  L  T  I  N  P  R  L  L  L  V  T  I  I  V  P  L  R  I  L  R  I  L  Q  F  I  Q  L  Q  I  M  I  I  L  G  S  L  I  K  V  D  S  I  L  M  N  L  W  I  S  M  G  I  M  V  R  G  E  V  N  L  G  K  I  L  M  G  N  E  L  K  V  D  M  V  M  M  V  M  A  M  G  C  L  L  I  R  V  V  K  *  S  L  M  G  H  E  G  L  V  Q  S  L  R  L  G  R  L  V  L  M  I  L  G  G  Q  L  G  I  I  L  R  K  N  V  H  Q  L  Q  L  Q  R  S  S  R  Q  F  P  R  L  I  R  S  R  M  R  K  V  V  F  R  S  L  G  *  S  Y  *  L  K  V  V  D  R  V  P  R  M  F  F  A  R :   L  A  W  M  E  S  A  C  W  T  Q  A  L  A  G  C  *  E  F  I  L  L  T  R  *  L  D  L  R :   R  R  I  H  L  P  L  P  S  G  Q  K  V  Q  W  I  *  N  Q  G  V  S  D  C  S  R  T  V  T  Q  P  V  P  C  *  I  Q  S  R  L  R  L  Y  S :   S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  :  I  N  W  I  A  K  S  *  R  P  C  Q  E  A  S   : G  G  D  G  E  K  P  K  R  I  I  W :   L  *  T  R  S  F  G  E  D  E  R  G  C  L  P  Y  L  Y  S  T  F  A   : G  S  S  S  E  L  R  F  R  D  Y  R  M  W  C  L  P  E  S  I  P  R  *  F  A  L  I  L  M  F  S  V  N  G  R  K  D  C  K  L  F  S  G  F  C  V  F  S  Y  I  V  S  C  I  C  *  Y  L  N  R  L  *  R  A  F  G  W  L  L  D  P  C  F  L  A  R  Q  F  A  H  L </second_frame>
            <third_frame>   *  I  P  R  S  L  S  K  S  S  S  F  S  A  S  T  T  L  L  S  S  L  R  S  T  P  G  C  S  *  L  Q  S  *  Y  H  S  E  F  F  V  S  F  S  L  F  N  S  K  L  *  *  Y  W  E  V  *  S  K  W  T  V  F  *  *  T  C  G  *  V  W  E  L  W  F  G  E  R  *  I  W  A  R  Y  L  W  E  T  S  *  K  W  I  W  *  *  W  L  W  R  W  G  V  C  L  S  G  *  *  S  R  A  L  W  G  T  R  D  W  F  K  V  F  D  L  V  V  *  F  *  *  F  W  E  A  N  W  V  *  F  S  E  R  T  F  I  S  S  N  C  K  D  R  Q  G  N  S  Q  G  *  Y  A  A  G  C  E  K  W  C  S  E  V  *  G  E  V  I  S  *  K  W  W  T  E  Y  P  G  C  S  L  P   : D  W  L  G  W  N  P  H  V  G  P  K  H  *  P  D  V  K  N  L  S  S  *  H  G  N  *  T  *   : G  D  G  F  I  Y  L  C  L  L  V  K  K  C  S  G  Y  R  T  K  A  Y  Q  T  A  V  E  Q  L  H  N  Q  F  P  V  R  Y  S  H  G  C  G  C  T   : V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R :   S  T  G  L  Q  S  H  E  D  L  A  K  K  L  Q  :  E  E  M  E  R  N  R  K  G  S  S   : G  S  R  Q  D  R  S  G  R  M  K  E  V  A  C  P  T  C  T  V  H  L  Q  :  V  Q  V  P  S  S  G  S  E  T  I  E  C  G  V  C  Q  N  P  F  L  V  S  S  H  *  F  *  C  F  P  S  M  E  G  K  T  A  N  S  F  L  V  F  V  C  S  R  T  L  F  R  A  S  V  N  I  *  T  V  C  D  A  P  L  V  G  C  L  I  L  V  S  W  Q  G  N  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72698" stop="72123"/>
                    <exon start="71020" stop="70934"/>
                    <exon start="70439" stop="70308"/>
                    <exon start="68580" stop="68457"/>
                    <exon start="65730" stop="65685"/>
                    <exon start="65038" stop="65005"/>
                    <exon start="64904" stop="64875"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FESHGAYQNPVHSQPQQPYYPPYDQPQAAPSYNHSTTPNSSYPSVYSTPNYDNTGKFDQSGQYFDEPVDKYGNYGSGRGEFGQDTYGKRAESGYGNDGYGDGVFAYQGSKVEPYGARGTGSKSSTWSSSFDDFGRPIGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGLDGIRMLDPSTSRMLRIYPLDTVTRLEATDSSTFAFWSKSAVDIEPRRIRLQSNSYTTSSLLDTVTAAVVQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDQLDCKVMKTLPRSFRRRWRETEKDHLALDKIVRGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="67971" e_stop="67234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="67971" e_stop="67234" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67971" stop="67317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67970" stop="67234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67970" stop="67397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCA</gDNA_template>
            <first_frame> R  V  S  T  I  L  L  G  I  V  H  R  M  P  L  K  L  I  K  I  F  H  S  W  P  V  I  L  Q  C  K  I  K  Q  C  G  T  K  I  M  F  L  F  L  R  F  S  C  I  K  T  A  S  F  A  R  S  H  E  K  H  A  T  F  K  G  A  L  V  S  I  F  V  S  M  A  I  C  S  S  V  P  L  S  S  S  E  V  C  T  L  N  L  L  C  M  P  F  C  F  P  D  S  T  I  V  C  P  P  H  S  S  V  L  E  K  L  Q  G  F  *  R  T  Q  S  V  *  E  F  S  N  H  S  S  F  L  *  N  L  I  P  S  L  G  A  L  T  C  Q  L  L  F  C  P  D  R  *  L  N  Q  T  D  Q  G  T  S  L  Q  D  S  N  Y  L  T  T  Y  L  S  T  R  W  F  Y  Y  H  H  D  I  T  Y  T  N  G  S  V  V  T  *  N  C  P  P  V  S  D  R  S  P  N  S  D  M  I  R  V  V  C  F  F  S  H  P  P  I  Q  F  S  I  L  C  C  N  H  L  F  P  *  R  V  C  L  M  G  I  S  P </first_frame>
            <second_frame>  E  C  R  Q  S  C  *  A  L  S  I  V  C  L  *  N  *  S  K  S  S  I  V  G  Q  *  F  S  N  A  K  S  N  S  A  G  L  R  *  C  S  S  F  L  G  F  H  V  S  R  Q  L  L  L  L  E  A  M  R  N  M  P  P  S  K  V  L  W  S  P  Y  L  F  P  W  P  Y  V  V  L  C  H  C  R  V  Q  K  F  V  P  *  T  Y  F  V  C  P  F  V  F  P  I  P  P  *  S  V  H  P  I  L  Q  S  L  K  S  F  K  D  F  E  E  L  N  Q  S  R  N  F  P  I  I  Q  V  S  C  K  I  *  F  P  A  L  E  R  S  H  V  S  Y  C  S  V  L  T  D  N  *  I  K  Q  I  R  E  L  L  C  K  I  P  I  T  *  P  P  I  F  P  Q  D  G  F  I  T  I  T  T  S  P  T  L  M  V  V  W  L  P  K  I  V  H  Q  F  L  I  D  L  Q  T  V  T  *  *  G  L  F  A  S  S  V  I  H  P  S  S  S  P  Y  F  V  V  I  T  F  F  H  R  E  F  V  S  W  A  Y  L   </second_frame>
            <third_frame>   S  V  D  N  L  A  R  H  C  P  S  Y  A  S  E  I  N  Q  N  L  P  *  L  A  S  D  S  P  M  Q  N  Q  T  V  R  D  *  D  N  V  P  L  S  *  V  F  M  Y  Q  D  S  F  F  C  *  K  P  *  E  T  C  H  L  Q  R  C  F  G  L  H  I  C  F  H  G  H  M  *  F  C  A  T  V  E  F  R  S  L  Y  P  E  L  T  L  Y  A  L  L  F  S  R  F  H  H  S  L  S  T  P  F  F  S  P  *  K  A  S  R  I  L  K  N  S  I  S  L  G  I  F  Q  S  F  K  F  L  V  K  F  N  S  Q  P  W  S  A  H  M  S  A  I  V  L  S  *  Q  I  T  K  S  N  R  S  G  N  F  S  A  R  F  Q  L  P  N  H  L  S  F  H  K  M  V  L  L  P  S  R  H  H  L  H  *  W  *  C  G  Y  L  K  L  S  T  S  F  *  *  I  S  K  Q  *  H  D  K  G  C  L  L  L  Q  S  S  T  H  P  V  L  H  T  L  L  *  S  P  F  S  I  E  S  L  S  H  G  H  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67971" stop="67609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSTILLGIVHRMPLKLIKIFHSWPVILQCKIKQCGTKIMFLFLRFSCIKTASFARSHEKHATFKGALVSIFVSMAICSSVPLSSSEVCTLNLLCMPFCFPDSTIVCPPHSSVLEKLQGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="66608" e_stop="66509"/>
            <exon e_start="66168" e_stop="66063"/>
            <exon e_start="65777" e_stop="65685"/>
            <exon e_start="65038" e_stop="65005"/>
            <exon e_start="64904" e_stop="64837"/>
            <exon e_start="64734" e_stop="64376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.573" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66608" e_stop="66509" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.573">
            <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66168" e_stop="66063" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66062" i_stop="65778" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65777" e_stop="65685" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65038" e_stop="65005" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.840">
            <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64904" e_stop="64837" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="64734" e_stop="64376" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66608" stop="66509"/>
              <exon start="66168" stop="66063"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65774" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG : CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGAT : GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG : GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG : GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG : GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAACCCTTGTC</gDNA_template>
            <first_frame> I  N  F  H  *  L  I  T  I  L  S  G  S  *  *  S  S  F  Q  V  H  S  L  W  I  S  L  Q  C  F  C  A  Q   : A  S  L  S  E  L  W  R  Y  F  L  *  Q  M  H  S  G  K  N  C  T  D  S  *  *  E  C  T  S  C  *  S  L  *  P  M :   L  R  F  L  V  G  *  A  A  R  R  K  L  S  I  D  Q  L  D  C  K  V  M  K  T  L  P  R  S  F  R :   R  R  W  R  E  T  E  K  D  H  L  :  A  L  D  K  I  V  R  G  G  *  K  R  L  L  A  L  L  V  Q  Y  I  C  R :   F  K  F  R  A  Q  V  P  R  L  *  N  V  V  F  A  R  I  H  S  S  L  V  R  T  D  F  D  V  F  R  Q  W  K  E  R  L  Q  T  L  F  W  F  L  C  V  L  V  H  C  F  V  H  L  L  I  F  E  P  F  V  T  R  L  W  L  V  A  *  S  L  F  P  G  K  A  I  C  S  F  D  L  Y  *  Q  E  E  I  *  H  F  F  F  S  L  H  G  E  N  I  S  E  F  D  S  S  N  S  S  L  N  Q  F  D  F  L  N  P  C  </first_frame>
            <second_frame>  L  I  F  I  N  S  L  P  F  C  Q  V  P  D  E  A  V  S  K  C  T  A  C  G  S  A  F  N  A  F  V  R  R  :  H  H  C  R  N  C  G  D  I  F  C  D  K  C  T  Q  G  R  T  A  L  T  A  D  E  N  A  P  V  V  R  V  C  D  R   : C  *  G  F  S  S  A  K  Q  R  E  G  N  C  Q  *  I  N  W  I  A  K  S  *  R  P  C  Q  E  A  S   : G  G  D  G  E  K  P  K  R  I  I  W :   L  *  T  R  S  F  G  E  D  E  R  G  C  L  P  Y  L  Y  S  T  F  A   : G  S  S  S  E  L  R  F  R  D  Y  R  M  W  C  L  P  E  S  I  P  R  *  F  A  L  I  L  M  F  S  V  N  G  R  K  D  C  K  L  F  S  G  F  C  V  F  S  Y  I  V  S  C  I  C  *  Y  L  N  R  L  *  R  A  F  G  W  L  L  D  P  C  F  L  A  R  Q  F  A  H  L  I  C  I  S  R  K  K  S  N  T  F  F  F  L  Y  M  E  K  I  *  V  N  L  I  P  V  T  Q  V  *  I  N  L  I  S  *  T  L  V </second_frame>
            <third_frame>   *  F  S  L  T  H  Y  H  F  V  R  F  L  M  K  Q  F  P  S  A  Q  L  V  D  Q  P  S  M  L  L  C  A  G :   I  T  V  G  I  V  E  I  F  S  V  T  N  A  L  R  E  E  L  H  *  Q  L  M  R  M  H  Q  L  L  E  F  V  T  D  :  A  E  V  S  R  R  L  S  S  A  K  E  T  V  N  R  S  T  G  L  Q  S  H  E  D  L  A  K  K  L  Q  :  E  E  M  E  R  N  R  K  G  S  S   : G  S  R  Q  D  R  S  G  R  M  K  E  V  A  C  P  T  C  T  V  H  L  Q  :  V  Q  V  P  S  S  G  S  E  T  I  E  C  G  V  C  Q  N  P  F  L  V  S  S  H  *  F  *  C  F  P  S  M  E  G  K  T  A  N  S  F  L  V  F  V  C  S  R  T  L  F  R  A  S  V  N  I  *  T  V  C  D  A  P  L  V  G  C  L  I  L  V  S  W  Q  G  N  L  L  I  *  F  V  L  A  G  R  N  L  T  L  F  F  F  F  T  W  R  K  Y  K  *  I  *  F  Q  *  L  K  F  K  S  I  *  F  L  K  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66104" stop="66063"/>
                    <exon start="65777" stop="65685"/>
                    <exon start="65038" stop="65005"/>
                    <exon start="64904" stop="64837"/>
                    <exon start="64734" stop="64657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLMRMHQLLEFVTDAEVSRRLSSAKETVNRSTGLQSHEDLAKKLQEEMERNRKGSSGSRQDRSGRMKEVACPTCTVHLQVQVPSSGSETIECGVCQNPFLVSSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="68998" e_stop="68310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="68998" e_stop="68310" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68998" stop="68310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTT</gDNA_template>
            <first_frame> E  L  L  Y  V  K  A  S  V  H  T  H  M  N  T  Y  I  Y  C  L  K  I  E  K  D  F  T  S  N  S  I  C  I  Q  G  R  N  *  *  Q  A  R  E  F  N  Q  I  P  F  I  G  K  L  Y  C  G  N  R  E  K  V  F  F  L  L  Y  I  N  C  *  I  S  L  T  *  G  L  S  G  T  G  V  Q  H  L  L  S  I  R  H  L  D  P  K  *  G  M  L  V  N  F  *  I  P  L  Y  K  F  L  V  L  L  V  Y  A  I  V  H  R  E  R  P  T  Q  Y  V  *  T  S  *  K  *  L  F  L  F  L  Q  A  V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R  S  L  G  N  I  F  Y  F  I  L  F  S  H  A  S  F  L  H  D  I  M  I  S  Y  D  Y  T  F  S  F  N  I  F  F  K  K  R  V  I  L  S  C  Q  F  F  L  I  F   </first_frame>
            <second_frame>  S  Y  F  M  *  K  R  V  C  T  H  T  *  T  H  T  Y  T  A  *  R  *  R  R  I  S  H  Q  T  V  Y  A  F  R  G  G  T  S  N  K  Q  G  S  S  T  R  S  L  S  L  E  N  Y  T  V  E  I  G  K  K  F  F  F  C  Y  I  L  I  V  E  F  L  *  H  K  V  L  V  V  Q  G  F  N  I  C  F  R  S  D  I  *  I  P  N  K  A  C  *  *  I  F  R  S  P  C  I  S  F  W  F  C  W  Y  M  Q  *  Y  T  E  R  D  Q  H  N  M  C  E  L  L  E  N  N  F  F  F  S  F  K  Q  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K  D  H  W  V  T  S  S  I  L  F  C  F  H  T  P  H  F  Y  M  I  *  *  L  A  T  T  I  L  S  R  S  T  F  F  L  K  K  E  *  F  F  L  V  S  F  F  S  S  F  </second_frame>
            <third_frame>   A  T  L  C  E  S  E  C  A  H  T  H  E  H  I  H  I  L  P  E  D  R  E  G  F  H  I  K  Q  Y  M  H  S  G  E  E  L  V  T  S  K  G  V  Q  P  D  P  F  H  W  K  I  I  L  W  K  *  G  K  S  F  F  F  V  I  Y  *  L  L  N  F  F  D  I  R  S  *  W  Y  R  G  S  T  F  A  F  D  Q  T  F  R  S  Q  I  R  H  A  S  K  F  L  D  P  L  V  *  V  S  G  S  A  G  I  C  N  S  T  P  R  E  T  N  T  I  C  V  N  F  L  K  I  T  F  S  F  P  S  S  S  S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  I  T  G  *  H  L  L  F  Y  F  V  F  T  R  L  I  F  T  *  Y  N  D  *  L  R  L  Y  F  L  V  Q  H  F  F  *  K  K  S  D  S  F  L  S  V  F  S  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68649" stop="68395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTERDQHNMCELLENNFFFSFKQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDHWVTSSILFCFHTPHFYMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="78299" PGL_stop="74237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78299" e_stop="77826"/>
            <exon e_start="76677" e_stop="76543"/>
            <exon e_start="76274" e_stop="76196"/>
            <exon e_start="76010" e_stop="75916"/>
            <exon e_start="75010" e_stop="74843"/>
            <exon e_start="74748" e_stop="74237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.922" e_score="0.960"/>
          <exon-intron don_prob="0.993" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="78299" e_stop="77826" e_length="474"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.922">
            <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76677" e_stop="76543" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.125">
            <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76274" e_stop="76196" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76010" e_stop="75916" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75010" e_stop="74843" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74748" e_stop="74237" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78299" stop="77826"/>
              <exon start="76677" stop="76646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78207" stop="77826"/>
              <exon start="76677" stop="76566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78206" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78206" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78206" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78205" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78197" stop="77826"/>
              <exon start="76677" stop="76628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78188" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78188" stop="77950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78178" stop="77826"/>
              <exon start="76677" stop="76570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78177" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78177" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78176" stop="77826"/>
              <exon start="76677" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78168" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78168" stop="77826"/>
              <exon start="76677" stop="76625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78164" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78163" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78163" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78160" stop="77925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78107" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78055" stop="77826"/>
              <exon start="76677" stop="76627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77897" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77845" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76558" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76209" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75965" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75007" stop="74843"/>
              <exon start="74748" stop="74251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74892" stop="74843"/>
              <exon start="74748" stop="74363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATTTAAACTGCTGACGTGGCAAAGTTTGAAACCCTCACTAAACCCAAAATTGAGTTGTTTACAAATCGCCACAAAGGCCCATAGAATAAAAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG : CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG : ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA : GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG : GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG : GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</gDNA_template>
            <first_frame> P  N  L  N  C  *  R  G  K  V  *  N  P  H  *  T  Q  N  *  V  V  Y  K  S  P  Q  R  P  I  E  *  K  F  A  F  S  R  S  S  E  E  E  R  G  S  P  E  *  G  E  S  V  E  S  P  P  C  T  G  Q  S  T  V  Q  P  P  W  R  C  H  S  I  G  C  L  R  R  L  S  L  A  R  A  A  T  N  H  L  P  G  L  T  G  Y  S  T  I  C  S  R  I  Y  L  L  E  P  Q  L  M  L  L  L  E  Q  C  F  S  R  W  R  L  P  R  *  P  R  K  F  T  L  K  K  *  C  H  R  N  Y  A  Q  K  I  L  S  F  I  S  M  K  L  V  L  S  V  T  R  L  K  :  H  S  S  T  T  M  T  Y  H  T  R  S  L  R  S  I  P  S  A  K  K  N  S  S  G  L  I  I  R  K  C  L  L  C  W  L  T  V  N  R  W  *  T  H  Q  :  T  L  L  I  N  C  T  R  R  F  V  L  V  I  L  H  L  M  L  M  K  R  A  N  G  A   : S  G  W  M  I  T  W  C  T  C  Y  H  L  T  Y  T  E  I  P  Q  K  L  L  N  R  S  I  T  S  L  V  M  :  V  I  S  A  L  R  R  E  *  L  P  S  M  L  E  L  Q  P  C  I  L  F  R  R  N  *  R  R  N  I  I  L  Q  M  S  V  Q  P  C  M  K  L  Q  K  H  G  L  M  L  L  R  A  E  I  F  L  :  V  A  L  N  Q  T  *  Q  I  L  L  Y  M  A  F  *  D  P  Y  A  I  *  N  L  V  E  T  W  W  R  T  H  V  L  V  I  G  T  L  E  W  K  V  K  *  A  C  L  L  E  F  K  L  K  *  H  L  L  V  N  G  Q  I  T  F  R  D  S  F  *  H  *  L  I  T  V  P  I  K  N  I  T  S  K  P  V  T  N  Y  *  Y  I  K  K  C  T  F  T  K  F  W  *  L  D  T  K  *  I  W  M  W  A  C  Y  H  S  T  L  T  Y  S  F  G  C  K  F  Y  L  R  C  A  E  T  I  L  A  V  Y  T  I  F  Y  P  M  V  *  K  L  V  T  F  M  C  *  F  Y  F  *  F  C  P  N  T  I  H  *  T  F  S  P   </first_frame>
            <second_frame>  P  I  *  T  A  D  V  A  K  F  E  T  L  T  K  P  K  I  E  L  F  T  N  R  H  K  G  P  *  N  K  S  L  H  F  P  D  L  R  K  R  K  E  D  R  R  N  E  E  S  Q  *  N  R  R  L  V  P  G  S  R  R  C  S  R  H  G  G  A  T  A  *  D  V  Y  G  G  S  V  *  H  E  Q  Q  Q  I  I  Y  Q  V  *  L  V  I  Q  Q  F  A  H  G  S  I  C  *  N  L  S  S  C  C  C  W  N  N  A  F  L  G  G  G  Y  H  V  D  R  G  S  S  R  *  R  S  S  A  T  G  I  T  P  K  R  S  C  P  L  S  V  *  S  L  S  F  L  *  Q  G  *  S :   I  P  R  L  L  *  L  T  I  Q  D  H  *  G  Q  S  H  Q  Q  K  R  T  Q  V  V  *  L  *  E  S  A  C  C  V  G  *  R  *  T  D  G  E  L  I  R :   H  Y  *  *  I  V  R  E  G  S  F  W  *  F  Y  I  *  C  *  *  R  E  Q  M  A  Q  :  V  G  G  *  S  L  G  A  H  V  I  T  *  H  I  P  K  Y  L  R  S  S  *  I  V  R  L  H  H  *  S  W :   *  F  Q  L  Y  G  E  N  N  C  Q  V  C  W  S  C  S  H  V  F  C  F  E  E  I  E  E  E  I  *  Y  Y  R  *  A  C  S  P  V  *  S  C  R  N  M  G  *  C  S  *  G  P  R  F  S  W :   W  L  *  T  K  L  S  R  S  C  C  I  W  R  F  E  T  H  T  L  S  E  I  W  *  R  H  G  G  E  H  T  Y  W  *  L  V  L  S  N  G  K  *  S  R  R  V  C  *  N  S  S  L  N  D  I  Y  W  S  M  G  K  S  H  S  G  T  V  F  D  T  S  *  L  Q  F  R  *  R  T  L  L  P  S  Q  *  Q  I  I  N  I  *  R  S  A  L  S  Q  S  F  G  S  *  I  Q  N  K  F  G  C  G  L  V  T  I  L  H  *  L  I  L  L  D  V  S  S  I  *  G  V  L  R  Q  Y  L  Q  F  T  P  F  F  T  Q  W  C  K  N  S  S  L  S  C  A  N  F  T  S  D  F  V  Q  I  Q  Y  I  E  L  F  P  P  </second_frame>
            <third_frame>   Q  F  K  L  L  T  W  Q  S  L  K  P  S  L  N  P  K  L  S  C  L  Q  I  A  T  K  A  H  R  I  K  V  C  I  F  Q  I  F  G  R  G  K  R  I  A  G  M  R  R  V  S  R  I  A  A  L  Y  R  A  V  D  G  A  A  A  M  E  V  P  Q  H  R  M  S  T  A  A  Q  F  S  T  S  S  N  K  S  S  T  R  S  N  W  L  F  N  N  L  L  T  D  L  S  A  R  T  S  A  H  A  V  A  G  T  M  L  F  S  V  A  A  T  T  L  T  E  E  V  H  A  K  E  V  V  P  P  E  L  R  P  K  D  L  V  L  Y  Q  Y  E  A  C  P  F  C  N  K  V  K   : A  F  L  D  Y  Y  D  L  P  Y  K  I  I  E  V  N  P  I  S  K  K  E  L  K  W  S  D  Y  K  K  V  P  V  V  L  V  D  G  E  Q  M  V  N  S  S   : D  I  I  D  K  L  Y  E  K  V  R  S  G  D  S  T  F  D  A  D  E  E  S  K  W  R  K :   W  V  D  D  H  L  V  H  M  L  S  P  N  I  Y  R  N  T  S  E  A  L  E  S  F  D  Y  I  T  S  H   : G  N  F  S  F  T  E  R  I  T  A  K  Y  A  G  A  A  A  M  Y  F  V  S  K  K  L  K  K  K  Y  N  I  T  D  E  R  A  A  L  Y  E  A  A  E  T  W  V  D  A  L  K  G  R  D  F  L   : G  G  S  K  P  N  L  A  D  L  A  V  Y  G  V  L  R  P  I  R  Y  L  K  S  G  R  D  M  V  E  N  T  R  I  G  D  W  Y  S  R  M  E  S  E  V  G  V  S  A  R  I  Q  A  *  M  T  S  I  G  Q  W  A  N  H  I  Q  G  Q  F  L  T  L  V  D  Y  S  S  D  K  E  H  Y  F  Q  A  S  D  K  L  L  I  Y  K  E  V  H  F  H  K  V  L  V  V  R  Y  K  I  N  L  D  V  G  L  L  P  F  Y  I  N  L  F  F  W  M  *  V  L  F  E  V  C  *  D  N  T  C  S  L  H  H  F  L  P  N  G  V  K  T  R  H  F  H  V  L  I  L  L  L  I  L  S  K  Y  N  T  L  N  F  F  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78297" stop="77826"/>
                    <exon start="76677" stop="76543"/>
                    <exon start="76274" stop="76196"/>
                    <exon start="76010" stop="75916"/>
                    <exon start="75010" stop="74843"/>
                    <exon start="74748" stop="74588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFKLLTWQSLKPSLNPKLSCLQIATKAHRIKVCIFQIFGRGKRIAGMRRVSRIAALYRAVDGAAAMEVPQHRMSTAAQFSTSSNKSSTRSNWLFNNLLTDLSARTSAHAVAGTMLFSVAATTLTEEVHAKEVVPPELRPKDLVLYQYEACPFCNKVKAFLDYYDLPYKIIEVNPISKKELKWSDYKKVPVVLVDGEQMVNSSDIIDKLYEKVRSGDSTFDADEESKWRKWVDDHLVHMLSPNIYRNTSEALESFDYITSHGNFSFTERITAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALKGRDFLGGSKPNLADLAVYGVLRPIRYLKSGRDMVENTRIGDWYSRMESEVGVSARIQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74587" stop="74375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTSIGQWANHIQGQFLTLVDYSSDKEHYFQASDKLLIYKEVHFHKVLVVRYKINLDVGLLPFYINLFFWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78299" e_stop="77826"/>
            <exon e_start="76677" e_stop="75916"/>
            <exon e_start="75010" e_stop="74843"/>
            <exon e_start="74748" e_stop="74237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.922" e_score="0.960"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="0.993"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="78299" e_stop="77826" e_length="474"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.922">
            <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="76677" e_stop="75916" e_length="762"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75010" e_stop="74843" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74748" e_stop="74237" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78299" stop="77826"/>
              <exon start="76677" stop="76646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78207" stop="77826"/>
              <exon start="76677" stop="76566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78197" stop="77826"/>
              <exon start="76677" stop="76628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78188" stop="77950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78178" stop="77826"/>
              <exon start="76677" stop="76570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78176" stop="77826"/>
              <exon start="76677" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78168" stop="77826"/>
              <exon start="76677" stop="76625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78160" stop="77925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78055" stop="77826"/>
              <exon start="76677" stop="76627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77869" stop="77826"/>
              <exon start="76677" stop="75958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75965" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75007" stop="74843"/>
              <exon start="74748" stop="74251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74892" stop="74843"/>
              <exon start="74748" stop="74363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATTTAAACTGCTGACGTGGCAAAGTTTGAAACCCTCACTAAACCCAAAATTGAGTTGTTTACAAATCGCCACAAAGGCCCATAGAATAAAAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG : CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG : GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG : GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</gDNA_template>
            <first_frame> P  N  L  N  C  *  R  G  K  V  *  N  P  H  *  T  Q  N  *  V  V  Y  K  S  P  Q  R  P  I  E  *  K  F  A  F  S  R  S  S  E  E  E  R  G  S  P  E  *  G  E  S  V  E  S  P  P  C  T  G  Q  S  T  V  Q  P  P  W  R  C  H  S  I  G  C  L  R  R  L  S  L  A  R  A  A  T  N  H  L  P  G  L  T  G  Y  S  T  I  C  S  R  I  Y  L  L  E  P  Q  L  M  L  L  L  E  Q  C  F  S  R  W  R  L  P  R  *  P  R  K  F  T  L  K  K  *  C  H  R  N  Y  A  Q  K  I  L  S  F  I  S  M  K  L  V  L  S  V  T  R  L  K  :  H  S  S  T  T  M  T  Y  H  T  R  S  L  R  S  I  P  S  A  K  K  N  S  S  G  L  I  I  R  K  C  L  L  C  W  L  T  V  N  R  W  *  T  H  Q  V  L  I  I  I  N  T  F  T  A  I  M  Q  V  Q  C  D  Q  K  Y  L  I  F  L  H  K  *  L  Q  D  A  S  R  L  L  V  K  L  I  E  V  L  F  I  W  S  V  S  K  I  R  *  L  Y  L  H  *  R  W  I  E  W  I  T  E  D  L  V  Y  T  C  L  F  Y  G  Y  F  *  I  L  F  L  C  T  F  L  W  I  I  D  I  I  D  K  L  Y  E  K  V  R  S  G  D  S  T  F  D  A  D  E  E  S  K  W  R  K  Y  A  L  L  L  P  F  M  T  F  P  *  R  F  P  L  K  I  N  D  I  C  E  L  S  N  Q  V  S  K  *  C  G  K  I  S  V  S  *  L  K  P  F  A  L  C  *  V  L  G  S  Y  L  M  I  V  I  L  T  N  A  G  G  W  M  I  T  W  C  T  C  Y  H  L  T  Y  T  E  I  P  Q  K  L  L  N  R  S  I  T  S  L  V  M  :  V  I  S  A  L  R  R  E  *  L  P  S  M  L  E  L  Q  P  C  I  L  F  R  R  N  *  R  R  N  I  I  L  Q  M  S  V  Q  P  C  M  K  L  Q  K  H  G  L  M  L  L  R  A  E  I  F  L  :  V  A  L  N  Q  T  *  Q  I  L  L  Y  M  A  F  *  D  P  Y  A  I  *  N  L  V  E  T  W  W  R  T  H  V  L  V  I  G  T  L  E  W  K  V  K  *  A  C  L  L  E  F  K  L  K  *  H  L  L  V  N  G  Q  I  T  F  R  D  S  F  *  H  *  L  I  T  V  P  I  K  N  I  T  S  K  P  V  T  N  Y  *  Y  I  K  K  C  T  F  T  K  F  W  *  L  D  T  K  *  I  W  M  W  A  C  Y  H  S  T  L  T  Y  S  F  G  C  K  F  Y  L  R  C  A  E  T  I  L  A  V  Y  T  I  F  Y  P  M  V  *  K  L  V  T  F  M  C  *  F  Y  F  *  F  C  P  N  T  I  H  *  T  F  S  P   </first_frame>
            <second_frame>  P  I  *  T  A  D  V  A  K  F  E  T  L  T  K  P  K  I  E  L  F  T  N  R  H  K  G  P  *  N  K  S  L  H  F  P  D  L  R  K  R  K  E  D  R  R  N  E  E  S  Q  *  N  R  R  L  V  P  G  S  R  R  C  S  R  H  G  G  A  T  A  *  D  V  Y  G  G  S  V  *  H  E  Q  Q  Q  I  I  Y  Q  V  *  L  V  I  Q  Q  F  A  H  G  S  I  C  *  N  L  S  S  C  C  C  W  N  N  A  F  L  G  G  G  Y  H  V  D  R  G  S  S  R  *  R  S  S  A  T  G  I  T  P  K  R  S  C  P  L  S  V  *  S  L  S  F  L  *  Q  G  *  S :   I  P  R  L  L  *  L  T  I  Q  D  H  *  G  Q  S  H  Q  Q  K  R  T  Q  V  V  *  L  *  E  S  A  C  C  V  G  *  R  *  T  D  G  E  L  I  R  Y  L  L  S  S  I  H  L  Q  L  L  C  R  Y  N  A  I  K  S  I  *  F  F  Y  T  S  N  C  K  M  H  L  D  C  W  *  N  *  L  K  S  Y  S  F  G  V  L  V  K  *  D  N  Y  I  C  I  K  D  G  *  N  G  L  Q  R  I  W  F  I  L  V  S  S  M  V  T  S  K  Y  F  S  F  A  L  F  Y  G  *  *  T  L  L  I  N  C  T  R  R  F  V  L  V  I  L  H  L  M  L  M  K  R  A  N  G  A  S  M  H  F  F  F  H  L  *  L  F  H  S  V  F  L  L  R  *  M  I  F  V  N  *  V  I  K  S  V  S  D  V  A  K  L  A  F  L  N  *  S  L  L  L  F  V  R  Y  L  G  L  I  *  *  S  *  F  S  Q  M  Q  V  G  G  *  S  L  G  A  H  V  I  T  *  H  I  P  K  Y  L  R  S  S  *  I  V  R  L  H  H  *  S  W :   *  F  Q  L  Y  G  E  N  N  C  Q  V  C  W  S  C  S  H  V  F  C  F  E  E  I  E  E  E  I  *  Y  Y  R  *  A  C  S  P  V  *  S  C  R  N  M  G  *  C  S  *  G  P  R  F  S  W :   W  L  *  T  K  L  S  R  S  C  C  I  W  R  F  E  T  H  T  L  S  E  I  W  *  R  H  G  G  E  H  T  Y  W  *  L  V  L  S  N  G  K  *  S  R  R  V  C  *  N  S  S  L  N  D  I  Y  W  S  M  G  K  S  H  S  G  T  V  F  D  T  S  *  L  Q  F  R  *  R  T  L  L  P  S  Q  *  Q  I  I  N  I  *  R  S  A  L  S  Q  S  F  G  S  *  I  Q  N  K  F  G  C  G  L  V  T  I  L  H  *  L  I  L  L  D  V  S  S  I  *  G  V  L  R  Q  Y  L  Q  F  T  P  F  F  T  Q  W  C  K  N  S  S  L  S  C  A  N  F  T  S  D  F  V  Q  I  Q  Y  I  E  L  F  P  P  </second_frame>
            <third_frame>   Q  F  K  L  L  T  W  Q  S  L  K  P  S  L  N  P  K  L  S  C  L  Q  I  A  T  K  A  H  R  I  K  V  C  I  F  Q  I  F  G  R  G  K  R  I  A  G  M  R  R  V  S  R  I  A  A  L  Y  R  A  V  D  G  A  A  A  M  E  V  P  Q  H  R  M  S  T  A  A  Q  F  S  T  S  S  N  K  S  S  T  R  S  N  W  L  F  N  N  L  L  T  D  L  S  A  R  T  S  A  H  A  V  A  G  T  M  L  F  S  V  A  A  T  T  L  T  E  E  V  H  A  K  E  V  V  P  P  E  L  R  P  K  D  L  V  L  Y  Q  Y  E  A  C  P  F  C  N  K  V  K   : A  F  L  D  Y  Y  D  L  P  Y  K  I  I  E  V  N  P  I  S  K  K  E  L  K  W  S  D  Y  K  K  V  P  V  V  L  V  D  G  E  Q  M  V  N  S  S  G  T  Y  Y  H  Q  Y  I  Y  S  Y  Y  A  G  T  M  R  S  K  V  F  N  F  F  T  Q  V  I  A  R  C  I  S  T  V  G  K  I  N  *  S  P  I  H  L  E  C  *  *  N  K  I  T  I  S  A  L  K  M  D  R  M  D  Y  R  G  S  G  L  Y  L  S  L  L  W  L  L  L  N  T  F  P  L  H  F  S  M  D  N  R  H  Y  *  *  I  V  R  E  G  S  F  W  *  F  Y  I  *  C  *  *  R  E  Q  M  A  Q  V  C  T  S  S  S  I  Y  D  F  S  I  A  F  S  S  *  D  K  *  Y  L  *  I  K  *  S  S  Q  *  V  M  W  Q  N  *  R  F  L  I  E  A  F  C  S  L  L  G  T  W  V  L  S  N  D  R  D  S  H  K  C  R  W  V  D  D  H  L  V  H  M  L  S  P  N  I  Y  R  N  T  S  E  A  L  E  S  F  D  Y  I  T  S  H   : G  N  F  S  F  T  E  R  I  T  A  K  Y  A  G  A  A  A  M  Y  F  V  S  K  K  L  K  K  K  Y  N  I  T  D  E  R  A  A  L  Y  E  A  A  E  T  W  V  D  A  L  K  G  R  D  F  L   : G  G  S  K  P  N  L  A  D  L  A  V  Y  G  V  L  R  P  I  R  Y  L  K  S  G  R  D  M  V  E  N  T  R  I  G  D  W  Y  S  R  M  E  S  E  V  G  V  S  A  R  I  Q  A  *  M  T  S  I  G  Q  W  A  N  H  I  Q  G  Q  F  L  T  L  V  D  Y  S  S  D  K  E  H  Y  F  Q  A  S  D  K  L  L  I  Y  K  E  V  H  F  H  K  V  L  V  V  R  Y  K  I  N  L  D  V  G  L  L  P  F  Y  I  N  L  F  F  W  M  *  V  L  F  E  V  C  *  D  N  T  C  S  L  H  H  F  L  P  N  G  V  K  T  R  H  F  H  V  L  I  L  L  L  I  L  S  K  Y  N  T  L  N  F  F  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78297" stop="77826"/>
                    <exon start="76677" stop="76424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFKLLTWQSLKPSLNPKLSCLQIATKAHRIKVCIFQIFGRGKRIAGMRRVSRIAALYRAVDGAAAMEVPQHRMSTAAQFSTSSNKSSTRSNWLFNNLLTDLSARTSAHAVAGTMLFSVAATTLTEEVHAKEVVPPELRPKDLVLYQYEACPFCNKVKAFLDYYDLPYKIIEVNPISKKELKWSDYKKVPVVLVDGEQMVNSSGTYYHQYIYSYYAGTMRSKVFNFFTQVIARCISTVGKIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76087" stop="75916"/>
                    <exon start="75010" stop="74843"/>
                    <exon start="74748" stop="74588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLIEAFCSLLGTWVLSNDRDSHKCRWVDDHLVHMLSPNIYRNTSEALESFDYITSHGNFSFTERITAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALKGRDFLGGSKPNLADLAVYGVLRPIRYLKSGRDMVENTRIGDWYSRMESEVGVSARIQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74587" stop="74375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTSIGQWANHIQGQFLTLVDYSSDKEHYFQASDKLLIYKEVHFHKVLVVRYKINLDVGLLPFYINLFFWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78299" e_stop="77826"/>
            <exon e_start="76677" e_stop="76543"/>
            <exon e_start="76010" e_stop="75916"/>
            <exon e_start="75010" e_stop="74843"/>
            <exon e_start="74748" e_stop="74237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.922" e_score="0.960"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="78299" e_stop="77826" e_length="474"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.922">
            <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76677" e_stop="76543" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76542" i_stop="76011" i_length="532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76010" e_stop="75916" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75010" e_stop="74843" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74748" e_stop="74237" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78299" stop="77826"/>
              <exon start="76677" stop="76646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78207" stop="77826"/>
              <exon start="76677" stop="76566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78197" stop="77826"/>
              <exon start="76677" stop="76628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78188" stop="77950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78178" stop="77826"/>
              <exon start="76677" stop="76570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78176" stop="77826"/>
              <exon start="76677" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78168" stop="77826"/>
              <exon start="76677" stop="76625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78160" stop="77925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78152" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76010" stop="75956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78055" stop="77826"/>
              <exon start="76677" stop="76627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75965" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75007" stop="74843"/>
              <exon start="74748" stop="74251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74892" stop="74843"/>
              <exon start="74748" stop="74363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATTTAAACTGCTGACGTGGCAAAGTTTGAAACCCTCACTAAACCCAAAATTGAGTTGTTTACAAATCGCCACAAAGGCCCATAGAATAAAAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG : CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG : GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG : GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG : GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</gDNA_template>
            <first_frame> P  N  L  N  C  *  R  G  K  V  *  N  P  H  *  T  Q  N  *  V  V  Y  K  S  P  Q  R  P  I  E  *  K  F  A  F  S  R  S  S  E  E  E  R  G  S  P  E  *  G  E  S  V  E  S  P  P  C  T  G  Q  S  T  V  Q  P  P  W  R  C  H  S  I  G  C  L  R  R  L  S  L  A  R  A  A  T  N  H  L  P  G  L  T  G  Y  S  T  I  C  S  R  I  Y  L  L  E  P  Q  L  M  L  L  L  E  Q  C  F  S  R  W  R  L  P  R  *  P  R  K  F  T  L  K  K  *  C  H  R  N  Y  A  Q  K  I  L  S  F  I  S  M  K  L  V  L  S  V  T  R  L  K  :  H  S  S  T  T  M  T  Y  H  T  R  S  L  R  S  I  P  S  A  K  K  N  S  S  G  L  I  I  R  K  C  L  L  C  W  L  T  V  N  R  W  *  T  H  Q  :  V  G  G  *  S  L  G  A  H  V  I  T  *  H  I  P  K  Y  L  R  S  S  *  I  V  R  L  H  H  *  S  W :   *  F  Q  L  Y  G  E  N  N  C  Q  V  C  W  S  C  S  H  V  F  C  F  E  E  I  E  E  E  I  *  Y  Y  R  *  A  C  S  P  V  *  S  C  R  N  M  G  *  C  S  *  G  P  R  F  S  W :   W  L  *  T  K  L  S  R  S  C  C  I  W  R  F  E  T  H  T  L  S  E  I  W  *  R  H  G  G  E  H  T  Y  W  *  L  V  L  S  N  G  K  *  S  R  R  V  C  *  N  S  S  L  N  D  I  Y  W  S  M  G  K  S  H  S  G  T  V  F  D  T  S  *  L  Q  F  R  *  R  T  L  L  P  S  Q  *  Q  I  I  N  I  *  R  S  A  L  S  Q  S  F  G  S  *  I  Q  N  K  F  G  C  G  L  V  T  I  L  H  *  L  I  L  L  D  V  S  S  I  *  G  V  L  R  Q  Y  L  Q  F  T  P  F  F  T  Q  W  C  K  N  S  S  L  S  C  A  N  F  T  S  D  F  V  Q  I  Q  Y  I  E  L  F  P  P  </first_frame>
            <second_frame>  P  I  *  T  A  D  V  A  K  F  E  T  L  T  K  P  K  I  E  L  F  T  N  R  H  K  G  P  *  N  K  S  L  H  F  P  D  L  R  K  R  K  E  D  R  R  N  E  E  S  Q  *  N  R  R  L  V  P  G  S  R  R  C  S  R  H  G  G  A  T  A  *  D  V  Y  G  G  S  V  *  H  E  Q  Q  Q  I  I  Y  Q  V  *  L  V  I  Q  Q  F  A  H  G  S  I  C  *  N  L  S  S  C  C  C  W  N  N  A  F  L  G  G  G  Y  H  V  D  R  G  S  S  R  *  R  S  S  A  T  G  I  T  P  K  R  S  C  P  L  S  V  *  S  L  S  F  L  *  Q  G  *  S :   I  P  R  L  L  *  L  T  I  Q  D  H  *  G  Q  S  H  Q  Q  K  R  T  Q  V  V  *  L  *  E  S  A  C  C  V  G  *  R  *  T  D  G  E  L  I  R :   W  V  D  D  H  L  V  H  M  L  S  P  N  I  Y  R  N  T  S  E  A  L  E  S  F  D  Y  I  T  S  H   : G  N  F  S  F  T  E  R  I  T  A  K  Y  A  G  A  A  A  M  Y  F  V  S  K  K  L  K  K  K  Y  N  I  T  D  E  R  A  A  L  Y  E  A  A  E  T  W  V  D  A  L  K  G  R  D  F  L   : G  G  S  K  P  N  L  A  D  L  A  V  Y  G  V  L  R  P  I  R  Y  L  K  S  G  R  D  M  V  E  N  T  R  I  G  D  W  Y  S  R  M  E  S  E  V  G  V  S  A  R  I  Q  A  *  M  T  S  I  G  Q  W  A  N  H  I  Q  G  Q  F  L  T  L  V  D  Y  S  S  D  K  E  H  Y  F  Q  A  S  D  K  L  L  I  Y  K  E  V  H  F  H  K  V  L  V  V  R  Y  K  I  N  L  D  V  G  L  L  P  F  Y  I  N  L  F  F  W  M  *  V  L  F  E  V  C  *  D  N  T  C  S  L  H  H  F  L  P  N  G  V  K  T  R  H  F  H  V  L  I  L  L  L  I  L  S  K  Y  N  T  L  N  F  F  P  Q </second_frame>
            <third_frame>   Q  F  K  L  L  T  W  Q  S  L  K  P  S  L  N  P  K  L  S  C  L  Q  I  A  T  K  A  H  R  I  K  V  C  I  F  Q  I  F  G  R  G  K  R  I  A  G  M  R  R  V  S  R  I  A  A  L  Y  R  A  V  D  G  A  A  A  M  E  V  P  Q  H  R  M  S  T  A  A  Q  F  S  T  S  S  N  K  S  S  T  R  S  N  W  L  F  N  N  L  L  T  D  L  S  A  R  T  S  A  H  A  V  A  G  T  M  L  F  S  V  A  A  T  T  L  T  E  E  V  H  A  K  E  V  V  P  P  E  L  R  P  K  D  L  V  L  Y  Q  Y  E  A  C  P  F  C  N  K  V  K   : A  F  L  D  Y  Y  D  L  P  Y  K  I  I  E  V  N  P  I  S  K  K  E  L  K  W  S  D  Y  K  K  V  P  V  V  L  V  D  G  E  Q  M  V  N  S  S   : G  G  W  M  I  T  W  C  T  C  Y  H  L  T  Y  T  E  I  P  Q  K  L  L  N  R  S  I  T  S  L  V  M  :  V  I  S  A  L  R  R  E  *  L  P  S  M  L  E  L  Q  P  C  I  L  F  R  R  N  *  R  R  N  I  I  L  Q  M  S  V  Q  P  C  M  K  L  Q  K  H  G  L  M  L  L  R  A  E  I  F  L  :  V  A  L  N  Q  T  *  Q  I  L  L  Y  M  A  F  *  D  P  Y  A  I  *  N  L  V  E  T  W  W  R  T  H  V  L  V  I  G  T  L  E  W  K  V  K  *  A  C  L  L  E  F  K  L  K  *  H  L  L  V  N  G  Q  I  T  F  R  D  S  F  *  H  *  L  I  T  V  P  I  K  N  I  T  S  K  P  V  T  N  Y  *  Y  I  K  K  C  T  F  T  K  F  W  *  L  D  T  K  *  I  W  M  W  A  C  Y  H  S  T  L  T  Y  S  F  G  C  K  F  Y  L  R  C  A  E  T  I  L  A  V  Y  T  I  F  Y  P  M  V  *  K  L  V  T  F  M  C  *  F  Y  F  *  F  C  P  N  T  I  H  *  T  F  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78297" stop="77826"/>
                    <exon start="76677" stop="76543"/>
                    <exon start="76010" stop="75916"/>
                    <exon start="75010" stop="74984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFKLLTWQSLKPSLNPKLSCLQIATKAHRIKVCIFQIFGRGKRIAGMRRVSRIAALYRAVDGAAAMEVPQHRMSTAAQFSTSSNKSSTRSNWLFNNLLTDLSARTSAHAVAGTMLFSVAATTLTEEVHAKEVVPPELRPKDLVLYQYEACPFCNKVKAFLDYYDLPYKIIEVNPISKKELKWSDYKKVPVVLVDGEQMVNSSGGWMITWCTCYHLTYTEIPQKLLNRSITSLVMVISALRRE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74587" stop="74375"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTSIGQWANHIQGQFLTLVDYSSDKEHYFQASDKLLIYKEVHFHKVLVVRYKINLDVGLLPFYINLFFWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="79709" PGL_stop="82477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79709" e_stop="81643"/>
            <exon e_start="81737" e_stop="82477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.934" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="79709" e_stop="81643" e_length="1935"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.934">
            <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81737" e_stop="82477" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79709" stop="80293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79722" stop="80250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79723" stop="80341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79726" stop="80214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79730" stop="80348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79732" stop="80144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79740" stop="80419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79740" stop="80371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79742" stop="80209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E199968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79743" stop="80169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79745" stop="79994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79751" stop="80369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79878" stop="80355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80123" stop="80835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80123" stop="80665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80154" stop="80732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80185" stop="80656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="80792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80389" stop="81065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80391" stop="81008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80401" stop="81029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80564" stop="80915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80600" stop="81057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80602" stop="81060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80850" stop="81391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81103" stop="81496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81178" stop="81643"/>
              <exon start="81737" stop="81788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="81643"/>
              <exon start="81737" stop="81968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81336" stop="81643"/>
              <exon start="81737" stop="82111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81337" stop="81643"/>
              <exon start="81737" stop="82024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81337" stop="81643"/>
              <exon start="81737" stop="81901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81342" stop="81643"/>
              <exon start="81737" stop="82046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81342" stop="81643"/>
              <exon start="81737" stop="81938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81349" stop="81643"/>
              <exon start="81737" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81363" stop="81643"/>
              <exon start="81737" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81373" stop="81643"/>
              <exon start="81737" stop="81886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81390" stop="81643"/>
              <exon start="81737" stop="81991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81464" stop="81643"/>
              <exon start="81737" stop="82098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81464" stop="81643"/>
              <exon start="81737" stop="82030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81521" stop="81643"/>
              <exon start="81737" stop="82146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81521" stop="81643"/>
              <exon start="81737" stop="82123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81532" stop="81643"/>
              <exon start="81737" stop="82238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81532" stop="81643"/>
              <exon start="81737" stop="81925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81559" stop="81643"/>
              <exon start="81737" stop="82386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81559" stop="81643"/>
              <exon start="81737" stop="82149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81559" stop="81643"/>
              <exon start="81737" stop="82146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81595" stop="81643"/>
              <exon start="81737" stop="81843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81603" stop="81643"/>
              <exon start="81737" stop="82196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81775" stop="82458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81782" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81789" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81795" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435931" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81817" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81863" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81880" stop="82472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81917" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416043" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81939" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82058" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82105" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTCATCACCGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG : GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</gDNA_template>
            <first_frame> V  Y  S  S  P  P  L  S  I  F  C  E  R  R  R  N  L  I  L  G  F  P  E  I  F  D  S  A  I  Q  S  Q  V  I  V  C  I  A  P  N  R  S  E  I  *  T  I  V  L  Y  F  L  R  F  I  F  V  F  W  *  R  K  G  G  K  S  Q  I  *  N  R  K  G  I  C  L  C  I  E  D  V  S  V  L  P  I  P  T  T  W  L  F  A  E  *  I  Q  Q  *  S  L  D  R  I  D  *  G  L  L  K  Q  R  A  L  E  F  M  C  L  R  S  C  C  L  I  *  S  S  R  D  L  Y  S  M  *  I  C  K  E  N  L  W  F  S  W  V  V  H  W  L  S  T  W  I  *  G  L  *  D  L  I  C  A  G  I  N  *  R  F  C  K  P  F  V  W  I  Y  *  L  Y  L  V  R  N  E  D  *  Y  I  L  F  C  A  H  L  V  D  L  T  V  F  N  E  F  Y  E  N  R  L  C  E  I  *  A  I  *  Y  H  S  N  L  W  *  R  R  G  D  K  F  R  Q  L  L  G  F  Q  F  V  V  C  G  G  N  R  N  E  K  L  E  V  Y  A  N  I  E  V  L  M  Y  C  L  R  K  K  S  S  R  N  C  R  Q  K  P  V  L  E  *  I  F  *  L  V  I  Y  F  F  L  K  S  N  H  Y  T  S  K  M  F  E  K  R  F  L  G  K  T  R  C  S  W  K  V  I  F  W  Q  I  A  H  T  R  T  N  H  C  A  *  L  K  S  L  S  K  K  L  Y  F  T  L  L  V  A  A  I  T  T  N  *  S  C  V  A  L  *  I  W  M  P  S  A  E  F  W  V  H  T  M  F  L  S  C  C  L  S  V  S  F  H  G  R  R  F  K  *  G  S  V  C  E  I  G  F  L  K  I  P  L  Y  P  V  T  T  I  E  S  Y  Y  S  V  *  S  T  M  *  V  F  C  N  M  L  F  F  S  T  C  I  I  S  V  R  I  T  N  T  L  F  V  S  L  A  *  F  S  L  V  T  T  F  M  Q  L  H  L  *  T  R  G  Q  F  F  V  L  S  R  I  R  *  L  R  L  C  I  L  S  *  *  W  K  Y  M  L  *  T  Q  H  M  F  G  A  Y  T  H  V  C  L  I  *  *  K  F  S  E  *  S  S  E  S  E  G  S  *  L  F  V  I  L  L  V  M  L  Y  *  S  S  I  S  L  Y  S  E  L  V  I  L  V  L  *  S  S  K  R  R  G  R  *  L  K  Q  K  R  R  T  G  R  G  K  R  K  K  R  K  E  K  R  R  R  L  K  R  R  R  V  I  L  D  L  A  R  P  L  M  S  P  K  G  S  T  C  S  N  V  S  K  M  N  L  S  S  W  R  G  A  I  S  L  R  N  M  S  L  L  C  V  H  R  I  P  A  A  H  P  T  A  P  R  T  V  I  K  G  R  G  L  L  H  L  H  L  H  E  V  A  Y  R  R  M  :  V  A  L  S  E  L  D  C  L  K  R  V  C  K  V  K  Y  Q  Y  P  K  R  S  T  C  Q  N  L  L  N  K  L  R  K  L  L  S  G  H  L  P  K  E  P  T  L  C  *  K  L  Q  T  N  E  V  V  L  L  L  *  Q  F  Q  S  Q  V  H  P  I  V  G  G  L  T  V  W  L  K  T  T  Q  L  H  L  V  P  K  C  T  R  T  A  *  S  F  S  T  R  I  *  L  R  T  G  F  H  Q  V  C  Q  V  I  I  *  I  W  R  M  I  N  H  G  C  F  K  E  N  L  S  K  L  E  L  R  K  K  T  *  A  A  V  T  K  L  V  E  A  A  V  H  C  G  S  S  H  G  H  N  T  F  L  M  L  S  C  M  H  C  P  T  Q  F  L  F  E  S  H  N  R  V  Y  R  R  C  F  S  W  I  Y  C  S  G  N  F  V  A  L  L  W  E  L  M  *  F  E  Q  D  L  G  A  M  T  K  M  F  F  F  I  F  *  L  P  V  A  I  F  R  N  P  L  F  Y  I  N  E  N  D  Q  Y  S  I  G  Y  F  L  S  Q </first_frame>
            <second_frame>  F  I  H  H  R  L  F  Q  Y  S  V  R  D  A  V  T  *  F  *  G  F  Q  K  F  L  I  L  R  F  N  H  K  *  S  F  V  S  R  Q  I  D  L  K  S  E  P  *  C  C  I  F  C  D  L  F  L  F  F  G  K  E  R  E  G  S  L  R  S  E  I  E  K  G  F  V  C  V  L  R  M  S  R  C  F  P  Y  P  P  P  G  Y  S  L  N  R  S  S  N  E  A  L  I  E  S  I  K  V  C  *  N  K  E  H  L  N  L  C  V  Y  A  L  V  A  *  Y  N  L  A  G  I  Y  T  L  C  K  S  V  R  K  I  C  G  F  R  G  L  C  I  G  C  Q  L  G  F  R  V  C  R  I  *  F  A  L  G  *  I  D  V  F  V  S  L  L  C  G  F  I  N  Y  T  W  L  E  M  R  I  S  I  Y  F  F  V  L  T  L  W  I  *  Q  Y  L  M  N  S  T  R  I  G  Y  A  K  S  E  Q  F  D  I  I  L  T  F  G  K  G  E  V  I  S  L  G  N  F  *  A  F  N  L  L  F  V  E  E  I  V  M  R  S  *  K  C  M  Q  T  L  R  C  *  C  I  V  *  G  R  S  P  A  E  I  V  G  K  N  L  C  L  N  R  F  S  N  L  *  Y  T  S  F  *  K  V  I  T  I  H  Q  R  C  L  R  K  D  F  W  V  K  R  G  A  L  G  K  L  Y  F  G  R  L  L  I  Q  E  L  T  I  V  H  N  *  K  A  F  R  K  N  C  I  S  H  Y  *  S  Q  L  *  L  L  I  E  A  V  *  H  Y  E  Y  G  C  P  L  L  N  F  G  S  I  P  C  S  F  P  A  V  S  L  F  L  S  M  V  E  G  L  N  E  V  P  S  V  K  L  V  F  L  R  F  P  C  T  L  S  Q  L  *  K  V  T  I  R  F  S  P  Q  C  E  C  S  V  I  C  Y  S  F  L  P  A  *  L  V  F  A  S  L  I  L  C  L  *  V  L  L  D  L  A  W  L  P  L  L  C  N  F  I  Y  R  P  G  A  S  S  L  C  *  V  E  L  G  D  *  D  C  A  F  C  H  N  D  G  S  I  C  C  E  P  N  T  C  L  V  P  T  P  M  S  V  *  Y  D  K  S  S  V  N  D  P  Q  N  L  R  D  L  N  C  S  L  S  F  W  S  C  C  I  S  L  L  S  P  S  I  L  N  L  L  S  W  C  S  K  A  P  K  G  E  G  G  S  *  S  R  K  E  G  Q  E  E  G  K  E  R  K  E  K  R  R  E  E  G  *  K  G  E  E  *  S  W  I  W  Q  G  H  S  *  V  Q  R  E  V  L  V  Q  M  F  R  R  *  T  *  A  V  G  E  E  Q  S  H  *  G  T  *  A  C  C  V  F  T  E  F  Q  L  L  I  R  Q  H  P  E  Q  *  *  K  E  E  A  Y  F  T  F  T  F  T  R  W  H  T  G  A  W :   *  H  Y  Q  N  *  I  V  *  K  G  C  A  R  *  N  I  S  I  Q  R  E  A  L  A  K  T  C  S  T  S  C  G  S  Y  C  Q  D  I  C  R  K  S  Q  P  F  V  E  N  Y  K  Q  T  K  L  S  S  S  C  S  S  F  R  A  K  Y  I  Q  L  W  V  G  *  P  C  G  *  R  Q  R  N  S  I  L  F  Q  S  A  R  E  Q  H  R  V  S  V  Q  E  F  D  *  E  L  A  S  T  K  S  A  K  *  *  S  R  F  G  G  *  S  I  M  A  V  S  K  K  T  *  A  S  S  S  *  G  K  K  L  R  R  R  *  Q  N  L  W  K  L  Q  F  I  V  A  A  A  T  G  T  I  P  S  *  C  *  V  V  C  I  A  L  H  S  S  F  L  N  H  I  T  V  C  I  E  D  V  L  A  G  Y  T  A  Q  G  I  L  *  L  F  S  G  N  *  C  S  L  N  R  I  *  A  R  *  Q  K  C  S  F  L  F  F  S  C  Q  L  L  S  S  E  I  H  C  S  T  S  M  K  M  I  N  I  V  L  D  I  F  F  L   </second_frame>
            <third_frame>   L  F  I  T  A  S  F  N  I  L  *  E  T  P  *  P  N  S  R  V  S  R  N  F  *  F  C  D  S  I  T  S  N  R  L  Y  R  A  K  S  I  *  N  L  N  H  S  V  V  F  F  A  I  Y  F  C  F  L  V  K  K  G  R  E  V  S  D  L  K  S  K  R  D  L  S  V  Y  *  G  C  L  G  A  S  H  T  H  H  L  A  I  R  *  I  D  P  A  M  K  P  *  S  N  R  L  R  F  V  E  T  K  S  T  *  I  Y  V  F  T  L  L  L  P  D  I  I  *  Q  G  S  I  L  Y  V  N  L  *  G  K  F  V  V  F  V  G  C  A  L  V  V  N  L  D  L  G  F  V  G  F  D  L  R  W  D  K  L  T  F  L  *  A  F  C  V  D  L  L  I  I  P  G  *  K  *  G  L  V  Y  T  F  L  C  S  P  C  G  F  N  S  I  *  *  I  L  R  E  *  V  M  R  N  L  S  N  L  I  S  F  *  P  L  V  K  E  R  *  *  V  *  A  T  F  R  L  S  I  C  C  L  W  R  K  S  *  *  E  V  R  S  V  C  K  H  *  G  V  N  V  L  F  E  E  E  V  Q  Q  K  L  *  A  K  T  C  A  *  I  D  F  L  T  C  N  I  L  L  F  K  K  *  S  L  Y  I  K  D  V  *  E  K  I  F  G  *  N  E  V  L  L  E  S  Y  I  L  A  D  C  S  Y  K  N  *  P  L  C  I  I  E  K  P  F  E  K  I  V  F  H  T  T  S  R  S  Y  N  Y  *  L  K  L  C  S  I  M  N  M  D  A  L  C  *  I  L  G  P  Y  H  V  P  F  L  L  S  L  C  F  F  P  W  *  K  V  *  M  R  F  R  L  *  N  W  F  S  *  D  S  P  V  P  C  H  N  Y  R  K  L  L  F  G  L  V  H  N  V  S  V  L  *  Y  V  I  L  F  Y  L  H  N  *  C  S  H  H  *  Y  F  V  C  K  S  C  L  I  *  L  G  Y  H  F  Y  A  T  S  S  I  D  Q  G  P  V  L  C  V  K  *  N  *  V  T  E  I  V  H  S  V  I  M  M  E  V  Y  V  V  N  P  T  H  V  W  C  L  H  P  C  L  F  D  M  I  K  V  Q  *  M  I  L  R  I  *  G  I  L  I  V  R  Y  P  S  G  H  A  V  L  V  F  Y  L  P  L  F  *  T  C  Y  P  G  A  L  K  L  Q  K  E  R  E  V  A  K  A  E  K  K  D  R  K  R  E  K  K  E  K  K  R  E  E  K  K  A  K  K  E  K  S  N  L  G  F  G  K  A  T  H  E  S  K  G  K  Y  L  F  K  C  F  E  D  E  P  E  Q  L  E  R  S  N  L  T  E  E  H  E  P  A  V  C  S  Q  N  S  S  C  S  S  D  S  T  Q  N  S  N  K  R  K  R  P  T  S  P  S  P  S  R  G  G  I  Q  A  H   : G  S  I  I  R  I  R  L  S  K  K  G  V  Q  G  E  I  S  V  S  K  E  K  H  L  P  K  P  A  Q  Q  V  A  E  V  T  V  R  T  S  A  E  R  A  N  P  L  L  K  T  T  N  K  R  S  C  P  P  P  V  A  V  S  E  P  S  T  S  N  C  G  W  V  D  R  V  A  E  D  N  A  T  P  S  C  S  K  V  H  E  N  S  I  E  F  Q  Y  K  N  L  I  E  N  W  L  P  P  S  L  P  S  D  N  L  D  L  E  D  D  Q  S  W  L  F  Q  R  K  P  K  Q  A  R  V  E  E  K  N  L  G  G  G  D  K  T  C  G  S  C  S  S  L  W  Q  Q  P  R  A  Q  Y  L  P  D  V  E  L  Y  A  L  P  Y  T  V  P  F  *  I  T  *  P  C  V  *  K  M  F  *  L  D  I  L  L  R  E  F  C  S  S  S  L  G  T  D  V  V  *  T  G  F  R  R  D  D  K  N  V  L  F  Y  F  L  A  A  S  C  Y  L  Q  K  S  I  V  L  H  Q  *  K  *  S  I  *  Y  W  I  F  S  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81295" stop="81643"/>
                    <exon start="81737" stop="82260"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCYPGALKLQKEREVAKAEKKDRKREKKEKKREEKKAKKEKSNLGFGKATHESKGKYLFKCFEDEPEQLERSNLTEEHEPAVCSQNSSCSSDSTQNSNKRKRPTSPSPSRGGIQAHGSIIRIRLSKKGVQGEISVSKEKHLPKPAQQVAEVTVRTSAERANPLLKTTNKRSCPPPVAVSEPSTSNCGWVDRVAEDNATPSCSKVHENSIEFQYKNLIENWLPPSLPSDNLDLEDDQSWLFQRKPKQARVEEKNLGGGDKTCGSCSSLWQQPRAQYLPDVELYALPYTVPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79722" e_stop="80027"/>
            <exon e_start="81319" e_stop="81643"/>
            <exon e_start="81737" e_stop="82477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79722" e_stop="80027" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.967">
            <gDNA_intron_boundary i_start="80028" i_stop="81318" i_length="1291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81319" e_stop="81643" e_length="325"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.934">
            <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81737" e_stop="82477" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79722" stop="80027"/>
              <exon start="81319" stop="81339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79731" stop="80027"/>
              <exon start="81319" stop="81643"/>
              <exon start="81737" stop="81914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79744" stop="80027"/>
              <exon start="81319" stop="81450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79745" stop="79994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="81643"/>
              <exon start="81737" stop="81968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81336" stop="81643"/>
              <exon start="81737" stop="82111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81337" stop="81643"/>
              <exon start="81737" stop="82024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81337" stop="81643"/>
              <exon start="81737" stop="81901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81342" stop="81643"/>
              <exon start="81737" stop="82046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81342" stop="81643"/>
              <exon start="81737" stop="81938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81349" stop="81643"/>
              <exon start="81737" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81363" stop="81643"/>
              <exon start="81737" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81373" stop="81643"/>
              <exon start="81737" stop="81886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81390" stop="81643"/>
              <exon start="81737" stop="81991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81464" stop="81643"/>
              <exon start="81737" stop="82098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81464" stop="81643"/>
              <exon start="81737" stop="82030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81521" stop="81643"/>
              <exon start="81737" stop="82146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81521" stop="81643"/>
              <exon start="81737" stop="82123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81532" stop="81643"/>
              <exon start="81737" stop="82238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81532" stop="81643"/>
              <exon start="81737" stop="81925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81559" stop="81643"/>
              <exon start="81737" stop="82386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81559" stop="81643"/>
              <exon start="81737" stop="82149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81559" stop="81643"/>
              <exon start="81737" stop="82146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81595" stop="81643"/>
              <exon start="81737" stop="81843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81603" stop="81643"/>
              <exon start="81737" stop="82196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81775" stop="82458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81782" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81789" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81795" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435931" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81817" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81863" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81880" stop="82472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81917" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416043" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81939" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82058" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82105" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAG : CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG : GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</gDNA_template>
            <first_frame> R  L  F  Q  Y  S  V  R  D  A  V  T  *  F  *  G  F  Q  K  F  L  I  L  R  F  N  H  K  *  S  F  V  S  R  Q  I  D  L  K  S  E  P  *  C  C  I  F  C  D  L  F  L  F  F  G  K  E  R  E  G  S  L  R  S  E  I  E  K  G  F  V  C  V  L  R  M  S  R  C  F  P  Y  P  P  P  G  Y  S  L  N  R  S  S  N  E  A  L  I  E  S  I  K  :  L  Q  K  E  R  E  V  A  K  A  E  K  K  D  R  K  R  E  K  K  E  K  K  R  E  E  K  K  A  K  K  E  K  S  N  L  G  F  G  K  A  T  H  E  S  K  G  K  Y  L  F  K  C  F  E  D  E  P  E  Q  L  E  R  S  N  L  T  E  E  H  E  P  A  V  C  S  Q  N  S  S  C  S  S  D  S  T  Q  N  S  N  K  R  K  R  P  T  S  P  S  P  S  R  G  G  I  Q  A  H   : G  S  I  I  R  I  R  L  S  K  K  G  V  Q  G  E  I  S  V  S  K  E  K  H  L  P  K  P  A  Q  Q  V  A  E  V  T  V  R  T  S  A  E  R  A  N  P  L  L  K  T  T  N  K  R  S  C  P  P  P  V  A  V  S  E  P  S  T  S  N  C  G  W  V  D  R  V  A  E  D  N  A  T  P  S  C  S  K  V  H  E  N  S  I  E  F  Q  Y  K  N  L  I  E  N  W  L  P  P  S  L  P  S  D  N  L  D  L  E  D  D  Q  S  W  L  F  Q  R  K  P  K  Q  A  R  V  E  E  K  N  L  G  G  G  D  K  T  C  G  S  C  S  S  L  W  Q  Q  P  R  A  Q  Y  L  P  D  V  E  L  Y  A  L  P  Y  T  V  P  F  *  I  T  *  P  C  V  *  K  M  F  *  L  D  I  L  L  R  E  F  C  S  S  S  L  G  T  D  V  V  *  T  G  F  R  R  D  D  K  N  V  L  F  Y  F  L  A  A  S  C  Y  L  Q  K  S  I  V  L  H  Q  *  K  *  S  I  *  Y  W  I  F  S  F  S  </first_frame>
            <second_frame>  A  S  F  N  I  L  *  E  T  P  *  P  N  S  R  V  S  R  N  F  *  F  C  D  S  I  T  S  N  R  L  Y  R  A  K  S  I  *  N  L  N  H  S  V  V  F  F  A  I  Y  F  C  F  L  V  K  K  G  R  E  V  S  D  L  K  S  K  R  D  L  S  V  Y  *  G  C  L  G  A  S  H  T  H  H  L  A  I  R  *  I  D  P  A  M  K  P  *  S  N  R  L  S :   S  K  R  R  G  R  *  L  K  Q  K  R  R  T  G  R  G  K  R  K  K  R  K  E  K  R  R  R  L  K  R  R  R  V  I  L  D  L  A  R  P  L  M  S  P  K  G  S  T  C  S  N  V  S  K  M  N  L  S  S  W  R  G  A  I  S  L  R  N  M  S  L  L  C  V  H  R  I  P  A  A  H  P  T  A  P  R  T  V  I  K  G  R  G  L  L  H  L  H  L  H  E  V  A  Y  R  R  M  :  V  A  L  S  E  L  D  C  L  K  R  V  C  K  V  K  Y  Q  Y  P  K  R  S  T  C  Q  N  L  L  N  K  L  R  K  L  L  S  G  H  L  P  K  E  P  T  L  C  *  K  L  Q  T  N  E  V  V  L  L  L  *  Q  F  Q  S  Q  V  H  P  I  V  G  G  L  T  V  W  L  K  T  T  Q  L  H  L  V  P  K  C  T  R  T  A  *  S  F  S  T  R  I  *  L  R  T  G  F  H  Q  V  C  Q  V  I  I  *  I  W  R  M  I  N  H  G  C  F  K  E  N  L  S  K  L  E  L  R  K  K  T  *  A  A  V  T  K  L  V  E  A  A  V  H  C  G  S  S  H  G  H  N  T  F  L  M  L  S  C  M  H  C  P  T  Q  F  L  F  E  S  H  N  R  V  Y  R  R  C  F  S  W  I  Y  C  S  G  N  F  V  A  L  L  W  E  L  M  *  F  E  Q  D  L  G  A  M  T  K  M  F  F  F  I  F  *  L  P  V  A  I  F  R  N  P  L  F  Y  I  N  E  N  D  Q  Y  S  I  G  Y  F  L  S  Q </second_frame>
            <third_frame>   P  L  S  I  F  C  E  R  R  R  N  L  I  L  G  F  P  E  I  F  D  S  A  I  Q  S  Q  V  I  V  C  I  A  P  N  R  S  E  I  *  T  I  V  L  Y  F  L  R  F  I  F  V  F  W  *  R  K  G  G  K  S  Q  I  *  N  R  K  G  I  C  L  C  I  E  D  V  S  V  L  P  I  P  T  T  W  L  F  A  E  *  I  Q  Q  *  S  L  D  R  I  D  *   : A  P  K  G  E  G  G  S  *  S  R  K  E  G  Q  E  E  G  K  E  R  K  E  K  R  R  E  E  G  *  K  G  E  E  *  S  W  I  W  Q  G  H  S  *  V  Q  R  E  V  L  V  Q  M  F  R  R  *  T  *  A  V  G  E  E  Q  S  H  *  G  T  *  A  C  C  V  F  T  E  F  Q  L  L  I  R  Q  H  P  E  Q  *  *  K  E  E  A  Y  F  T  F  T  F  T  R  W  H  T  G  A  W :   *  H  Y  Q  N  *  I  V  *  K  G  C  A  R  *  N  I  S  I  Q  R  E  A  L  A  K  T  C  S  T  S  C  G  S  Y  C  Q  D  I  C  R  K  S  Q  P  F  V  E  N  Y  K  Q  T  K  L  S  S  S  C  S  S  F  R  A  K  Y  I  Q  L  W  V  G  *  P  C  G  *  R  Q  R  N  S  I  L  F  Q  S  A  R  E  Q  H  R  V  S  V  Q  E  F  D  *  E  L  A  S  T  K  S  A  K  *  *  S  R  F  G  G  *  S  I  M  A  V  S  K  K  T  *  A  S  S  S  *  G  K  K  L  R  R  R  *  Q  N  L  W  K  L  Q  F  I  V  A  A  A  T  G  T  I  P  S  *  C  *  V  V  C  I  A  L  H  S  S  F  L  N  H  I  T  V  C  I  E  D  V  L  A  G  Y  T  A  Q  G  I  L  *  L  F  S  G  N  *  C  S  L  N  R  I  *  A  R  *  Q  K  C  S  F  L  F  F  S  C  Q  L  L  S  S  E  I  H  C  S  T  S  M  K  M  I  N  I  V  L  D  I  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79851" stop="80027"/>
                    <exon start="81319" stop="81643"/>
                    <exon start="81737" stop="82260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCIFCDLFLFFGKEREGSLRSEIEKGFVCVLRMSRCFPYPPPGYSLNRSSNEALIESIKLQKEREVAKAEKKDRKREKKEKKREEKKAKKEKSNLGFGKATHESKGKYLFKCFEDEPEQLERSNLTEEHEPAVCSQNSSCSSDSTQNSNKRKRPTSPSPSRGGIQAHGSIIRIRLSKKGVQGEISVSKEKHLPKPAQQVAEVTVRTSAERANPLLKTTNKRSCPPPVAVSEPSTSNCGWVDRVAEDNATPSCSKVHENSIEFQYKNLIENWLPPSLPSDNLDLEDDQSWLFQRKPKQARVEEKNLGGGDKTCGSCSSLWQQPRAQYLPDVELYALPYTVPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81627" e_stop="81628"/>
            <exon e_start="81737" e_stop="82477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81627" e_stop="81628" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.934">
            <gDNA_intron_boundary i_start="81629" i_stop="81736" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81737" e_stop="82477" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81627" stop="81628"/>
              <exon start="81737" stop="82198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81775" stop="82458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81782" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415571" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81789" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81795" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435931" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81817" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81863" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81880" stop="82472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81917" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416043" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81939" stop="82454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82058" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82105" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TG : GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</gDNA_template>
            <first_frame> W :   *  H  Y  Q  N  *  I  V  *  K  G  C  A  R  *  N  I  S  I  Q  R  E  A  L  A  K  T  C  S  T  S  C  G  S  Y  C  Q  D  I  C  R  K  S  Q  P  F  V  E  N  Y  K  Q  T  K  L  S  S  S  C  S  S  F  R  A  K  Y  I  Q  L  W  V  G  *  P  C  G  *  R  Q  R  N  S  I  L  F  Q  S  A  R  E  Q  H  R  V  S  V  Q  E  F  D  *  E  L  A  S  T  K  S  A  K  *  *  S  R  F  G  G  *  S  I  M  A  V  S  K  K  T  *  A  S  S  S  *  G  K  K  L  R  R  R  *  Q  N  L  W  K  L  Q  F  I  V  A  A  A  T  G  T  I  P  S  *  C  *  V  V  C  I  A  L  H  S  S  F  L  N  H  I  T  V  C  I  E  D  V  L  A  G  Y  T  A  Q  G  I  L  *  L  F  S  G  N  *  C  S  L  N  R  I  *  A  R  *  Q  K  C  S  F  L  F  F  S  C  Q  L  L  S  S  E  I  H  C  S  T  S  M  K  M  I  N  I  V  L  D  I  F  F  L   </first_frame>
            <second_frame>   : G  S  I  I  R  I  R  L  S  K  K  G  V  Q  G  E  I  S  V  S  K  E  K  H  L  P  K  P  A  Q  Q  V  A  E  V  T  V  R  T  S  A  E  R  A  N  P  L  L  K  T  T  N  K  R  S  C  P  P  P  V  A  V  S  E  P  S  T  S  N  C  G  W  V  D  R  V  A  E  D  N  A  T  P  S  C  S  K  V  H  E  N  S  I  E  F  Q  Y  K  N  L  I  E  N  W  L  P  P  S  L  P  S  D  N  L  D  L  E  D  D  Q  S  W  L  F  Q  R  K  P  K  Q  A  R  V  E  E  K  N  L  G  G  G  D  K  T  C  G  S  C  S  S  L  W  Q  Q  P  R  A  Q  Y  L  P  D  V  E  L  Y  A  L  P  Y  T  V  P  F  *  I  T  *  P  C  V  *  K  M  F  *  L  D  I  L  L  R  E  F  C  S  S  S  L  G  T  D  V  V  *  T  G  F  R  R  D  D  K  N  V  L  F  Y  F  L  A  A  S  C  Y  L  Q  K  S  I  V  L  H  Q  *  K  *  S  I  *  Y  W  I  F  S  F  S  </second_frame>
            <third_frame>   :  V  A  L  S  E  L  D  C  L  K  R  V  C  K  V  K  Y  Q  Y  P  K  R  S  T  C  Q  N  L  L  N  K  L  R  K  L  L  S  G  H  L  P  K  E  P  T  L  C  *  K  L  Q  T  N  E  V  V  L  L  L  *  Q  F  Q  S  Q  V  H  P  I  V  G  G  L  T  V  W  L  K  T  T  Q  L  H  L  V  P  K  C  T  R  T  A  *  S  F  S  T  R  I  *  L  R  T  G  F  H  Q  V  C  Q  V  I  I  *  I  W  R  M  I  N  H  G  C  F  K  E  N  L  S  K  L  E  L  R  K  K  T  *  A  A  V  T  K  L  V  E  A  A  V  H  C  G  S  S  H  G  H  N  T  F  L  M  L  S  C  M  H  C  P  T  Q  F  L  F  E  S  H  N  R  V  Y  R  R  C  F  S  W  I  Y  C  S  G  N  F  V  A  L  L  W  E  L  M  *  F  E  Q  D  L  G  A  M  T  K  M  F  F  F  I  F  *  L  P  V  A  I  F  R  N  P  L  F  Y  I  N  E  N  D  Q  Y  S  I  G  Y  F  L  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81628" stop="82260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSIIRIRLSKKGVQGEISVSKEKHLPKPAQQVAEVTVRTSAERANPLLKTTNKRSCPPPVAVSEPSTSNCGWVDRVAEDNATPSCSKVHENSIEFQYKNLIENWLPPSLPSDNLDLEDDQSWLFQRKPKQARVEEKNLGGGDKTCGSCSSLWQQPRAQYLPDVELYALPYTVPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="91975" PGL_stop="92424"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91975" e_stop="92424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="91975" e_stop="92424" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91975" stop="92298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91975" stop="92282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91975" stop="92127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91976" stop="92424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATATATATTGCATAATTATAAGTGTATACCAAGAAGATATATGTTTTTCTCTCGCTTTATGCAAAAACACAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTAGCAATTGTATTATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAAATAAGCGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTTTCTTTATACAAAACATAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGACGAACGAGATTTCTGGGAGAGAGACGCTGGCAAATTTTAGCTAACGTTCGCTATGGAGCACAATTAAATCAAACCCTGGCTATTCCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  Y  I  L  H  N  Y  K  C  I  P  R  R  Y  M  F  F  S  R  F  M  Q  K  H  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  L  A  I  V  L  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  N  K  R  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  S  L  Y  K  T  *  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  *  R  T  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  R  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  I  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  I  Y  C  I  I  I  S  V  Y  Q  E  D  I  C  F  S  L  A  L  C  K  N  T  N  T  I  Y  T  L  L  L  Y  K  V  R  E  N  C  I  S  L  Q  L  Y  N  *  Q  L  Y  Y  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  I  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  F  L  Y  T  K  H  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  D  E  R  D  F  W  E  R  D  A  G  K  F  *  L  T  F  A  M  E  H  N  *  I  K  P  W  L  F  H  L  F  *  V  I   </second_frame>
            <third_frame>   K  C  I  Y  I  A  *  L  *  V  Y  T  K  K  I  Y  V  F  L  S  L  Y  A  K  T  Q  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  S  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  K  *  A  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  F  F  I  Q  N  I  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  T  N  E  I  S  G  R  E  T  L  A  N  F  S  *  R  S  L  W  S  T  I  K  S  N  P  G  Y  S  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="109899" PGL_stop="110146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109899" e_stop="110146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="109899" e_stop="110146" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109899" stop="110146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATTTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGTTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGATTTTTATTA</gDNA_template>
            <first_frame> S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  Y  S  *  F  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  M  I  S  F  E  L  *  K  L  I  I  D  F  Y   </first_frame>
            <second_frame>  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  F  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  V  S  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  V  L  S  Y  R  S  *  L  L  I  F  I  </second_frame>
            <third_frame>   *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  F  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  F  L  R  I  L  L  V  *  *  F  D  Y  R  C  S  C  D  D  D  F  Q  I  L  G  N  D  K  F  *  V  I  E  V  D  Y  *  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="114424" PGL_stop="110411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111170" e_stop="110411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="111170" e_stop="110411" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111170" stop="110411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111167" stop="110443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111166" stop="110732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111164" stop="110446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111164" stop="110505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111164" stop="110588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111160" stop="110438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111160" stop="110571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111160" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111107" stop="110465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTTCGAATCACTAATTTTTCTTATTGAA</gDNA_template>
            <first_frame> *  L  F  I  L  L  L  S  S  *  H  I  L  *  F  *  I  C  V  V  F  C  C  *  D  F  L  N  L  V  *  G  L  L  S  L  Q  L  L  S  F  V  H  F  V  W  S  Y  C  H  F  V  F  L  T  V  F  A  I  F  Y  Y  K  D  N  I  N  L  *  L  R  S  H  F  I  H  L  *  L  M  L  Y  I  P  F  G  F  L  I  F  F  H  *  F  S  I  L  F  *  Y  D  K  M  *  C  L  C  Y  S  G  *  H  Y  L  A  K  *  S  I  Y  D  I  V  L  K  K  N  N  I  L  L  F  I  L  V  L  L  Y  K  M  S  Y  V  N  R  E  I  G  I  Q  R  *  G  L  V  E  A  *  C  C  H  I  F  Y  H  F  V  L  *  K  L  C  D  A  I  L  C  *  Q  V  I  F  Y  Q  R  *  S  R  R  S  K  H  E  R  C  I  C  F  S  I  Q  Y  V  N  V  C  N  *  Y  S  H  I  *  K  C  *  T  M  *  V  S  H  F  D  I  Q  *  Y  D  M  H  M  K  I  Y  Y  E  Q  I  W  Q  L  *  C  V  R  I  T  N  F  S  Y  *  </first_frame>
            <second_frame>  N  S  S  F  Y  F  S  L  L  N  I  Y  F  N  F  K  F  V  W  S  S  V  V  K  I  F  L  I  L  Y  E  G  C  Y  L  Y  N  Y  *  A  L  F  T  L  F  G  H  I  V  T  L  F  S  *  L  F  L  Q  S  F  T  I  K  I  I  L  I  F  N  *  D  L  I  S  Y  I  C  N  *  C  F  T  F  H  L  A  F  L  F  S  S  T  N  S  L  F  Y  S  N  T  T  K  C  S  V  Y  A  I  L  V  D  I  T  L  L  N  D  L  S  M  T  *  F  *  K  K  I  T  Y  F  C  S  Y  W  C  Y  Y  I  K  C  L  M  S  I  V  K  *  E  F  K  D  E  A  *  L  K  L  N  V  A  T  F  F  I  I  L  C  C  K  S  Y  V  M  R  F  C  A  N  R  *  F  F  I  K  D  D  P  E  D  P  S  M  K  D  A  S  V  F  L  Y  S  M  *  M  Y  V  I  S  I  P  T  Y  E  N  V  K  L  C  K  Y  L  T  S  T  F  S  S  M  T  C  T  *  K  Y  I  M  N  K  F  G  S  Y  N  V  F  E  S  L  I  F  L  I  E </second_frame>
            <third_frame>   T  L  H  F  T  S  L  F  L  T  Y  T  L  I  L  N  L  C  G  L  L  L  L  R  F  S  *  S  C  M  R  V  V  I  F  T  T  I  E  L  C  S  L  C  L  V  I  L  S  L  C  F  L  D  C  F  C  N  L  L  L  *  R  *  Y  *  S  L  I  K  I  S  F  H  T  F  V  I  D  A  L  H  S  I  W  L  S  Y  F  L  P  L  I  L  Y  S  I  L  I  R  Q  N  V  V  F  M  L  F  W  L  T  L  P  C  *  M  I  Y  L  *  H  S  F  K  K  K  *  H  T  F  V  H  I  G  V  I  I  *  N  V  L  C  Q  S  *  N  R  N  S  K  M  R  L  S  *  S  L  M  L  P  H  F  L  S  F  C  V  V  K  V  M  *  C  D  S  V  L  T  G  D  F  L  S  K  M  I  Q  K  I  Q  A  *  K  M  H  L  F  F  Y  T  V  C  K  C  M  *  L  V  F  P  H  M  K  M  L  N  Y  V  S  I  S  L  R  H  S  V  V  *  H  A  H  E  N  I  L  *  T  N  L  A  A  I  M  C  S  N  H  *  F  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112821" e_stop="111841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="112821" e_stop="111841" e_length="981"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112821" stop="112256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112820" stop="112243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112527" stop="111841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTTTTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAA</gDNA_template>
            <first_frame> S  V  Y  N  F  F  F  F  L  D  *  Y  L  N  L  K  *  K  K  K  R  *  G  K  W  L  *  *  L  H  K  M  Y  Y  N  S  K  N  D  T  C  L  K  K  I  I  Y  C  F  I  H  *  Q  M  E  *  C  S  S  C  F  L  C  F  *  Q  *  C  N  F  H  F  F  D  F  *  Q  N  F  S  S  F  F  *  F  Y  F  L  S  T  L  I  F  K  F  K  I  N  F  F  N  F  *  Y  V  H  *  F  C  L  N  H  K  Y  L  K  Q  K  K  N  M  N  N  N  L  *  L  *  L  V  *  *  I  N  K  N  M  K  H  R  D  I  Y  V  Q  E  V  F  I  I  S  F  S  L  *  I  N  V  *  I  *  N  K  Q  K  K  R  *  G  K  W  L  *  *  L  F  F  Y  I  F  Y  S  *  Y  *  I  L  I  R  *  I  I  L  R  P  N  T  L  L  N  I  I  N  R  N  S  I  V  K  Y  V  N  N  Y  F  L  I  V  Y  Q  I  K  *  *  L  I  K  I  N  E  S  N  I  *  L  T  *  H  I  M  S  L  I  M  I  K  E  D  R  C  K  L  L  F  T  F  C  F  L  F  S  *  E  F  H  F  L  H  Y  T  *  P  L  L  F  I  F  L  F  S  F  Y  I  N  I  *  I  *  N  K  N  F  Q  F  L  I  C  S  L  I  L  S  E  S  Q  I  S  Q  T  K  K  K  Y  E  *  *  F  I  I  I  I  Y  I  I  N  K  K </first_frame>
            <second_frame>  V  F  I  I  S  F  S  F  *  I  N  I  *  I  *  N  K  K  R  K  D  R  G  S  G  Y  N  N  Y  I  R  C  T  T  T  V  K  M  I  R  V  L  K  K  L  Y  I  V  L  Y  T  N  K  W  S  D  V  A  P  A  F  Y  A  F  S  S  S  V  I  F  I  F  L  T  F  S  K  T  F  P  P  F  F  N  F  I  F  F  L  H  *  Y  L  N  L  K  *  I  F  L  I  S  D  M  F  I  D  F  V  *  I  T  N  I  S  N  K  K  K  I  *  I  I  I  Y  N  Y  N  *  Y  N  K  *  I  K  I  *  N  I  E  I  Y  M  Y  K  K  C  L  *  F  L  F  L  C  R  L  M  F  K  F  K  I  N  K  R  K  D  R  G  S  G  Y  N  N  Y  F  F  I  Y  F  T  L  N  I  K  Y  L  F  D  K  L  F  *  D  L  I  L  Y  *  T  S  S  I  E  I  V  *  *  N  T  L  I  I  I  F  *  L  C  I  K  L  N  N  N  *  *  K  L  T  K  V  I  Y  D  *  L  D  T  L  *  V  *  *  *  L  K  K  T  G  V  N  C  F  S  L  F  V  F  F  F  L  R  N  F  T  S  Y  I  T  R  S  P  S  F  L  F  F  Y  F  L  S  T  L  I  F  K  F  R  I  K  T  F  N  F  *  Y  V  H  *  F  C  L  N  H  K  Y  R  K  Q  K  K  N  M  N  N  N  L  *  L  *  F  I  *  *  I  K   </second_frame>
            <third_frame>   C  L  *  F  L  F  L  S  R  L  I  F  K  F  K  I  K  K  E  K  I  G  E  V  V  I  I  I  T  *  D  V  L  Q  Q  *  K  *  Y  V  S  *  K  N  Y  I  L  F  Y  T  L  T  N  G  V  M  *  L  L  L  F  M  L  L  A  V  V  *  F  S  F  F  *  L  L  A  K  L  F  L  L  F  L  I  L  F  S  F  Y  I  N  I  *  I  *  N  K  F  F  *  F  L  I  C  S  L  I  L  S  E  S  Q  I  S  Q  T  K  K  K  Y  E  *  *  F  I  I  I  I  S  I  I  N  K  *  K  Y  E  T  *  R  Y  I  C  T  R  S  V  Y  N  F  F  F  F  V  D  *  C  L  N  L  K  *  T  K  E  K  I  G  E  V  V  I  I  I  I  F  L  Y  I  L  L  L  I  L  N  T  Y  S  I  N  Y  F  K  T  *  Y  S  T  K  H  H  Q  *  K  *  Y  S  K  I  R  *  *  L  F  F  N  C  V  S  N  *  I  I  T  N  K  N  *  R  K  *  Y  M  I  N  L  T  H  Y  E  F  N  N  D  *  R  R  Q  V  *  I  A  F  H  F  L  F  S  F  F  L  G  I  S  L  P  T  L  H  V  A  P  P  F  Y  F  F  I  F  F  L  H  *  Y  L  N  L  E  *  K  L  S  I  S  D  M  F  I  D  F  V  *  I  T  N  I  A  N  K  K  K  I  *  I  I  I  Y  N  Y  N  L  Y  N  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112775" stop="112548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKKRKDRGSGYNNYIRCTTTVKMIRVLKKLYIVLYTNKWSDVAPAFYAFSSSVIFIFLTFSKTFPPFFNFIFFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114424" e_stop="114389"/>
            <exon e_start="114295" e_stop="114228"/>
            <exon e_start="113720" e_stop="113679"/>
            <exon e_start="113315" e_stop="113248"/>
            <exon e_start="110633" e_stop="110431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.844" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.976"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114424" e_stop="114389" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.844" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114388" i_stop="114296" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114295" e_stop="114228" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="114227" i_stop="113721" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="113720" e_stop="113679" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113678" i_stop="113316" i_length="363"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113315" e_stop="113248" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113247" i_stop="110634" i_length="2614"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="110633" e_stop="110431" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114424" stop="114389"/>
              <exon start="114295" stop="114228"/>
              <exon start="113720" stop="113679"/>
              <exon start="113315" stop="113248"/>
              <exon start="110633" stop="110431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114421" stop="114389"/>
              <exon start="114295" stop="114228"/>
              <exon start="113720" stop="113679"/>
              <exon start="113315" stop="113248"/>
              <exon start="110633" stop="110436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114421" stop="114389"/>
              <exon start="114295" stop="114228"/>
              <exon start="113720" stop="113679"/>
              <exon start="113315" stop="113248"/>
              <exon start="110633" stop="110436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTTGTCATGCTTTTCTTCTTTGTTTCTCATG : GTGTAGGAACCAGCAGAAAAATGGTGGGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACCAG : GGTTCTTTTTCACATGGAGACACCCGTGGAGTTCTACACTAG : GTGTAGGAACCGGCAGAAAAATGGTGGGTTCTTTATCACATGGAGACACCCGTGGAGTTTTACACCAG : GTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCTATAATGTGTTCGAAT</gDNA_template>
            <first_frame> L  F  L  S  C  F  S  S  L  F  L  M  :  V  *  E  P  A  E  K  W  W  V  L  F  H  M  E  T  P  V  E  F  Y  T  R :   V  L  F  H  M  E  T  P  V  E  F  Y  T  R :   C  R  N  R  Q  K  N  G  G  F  F  I  T  W  R  H  P  W  S  F  T  P   : G  D  F  L  S  K  M  I  Q  K  I  Q  A  *  K  M  H  L  F  F  Y  T  V  C  K  C  M  *  L  V  F  P  H  M  K  M  L  N  Y  V  S  I  S  L  R  H  S  V  V  *  H  A  H  E  N  I  L  *  T  N  L  A  A  I  M  C  S  N </first_frame>
            <second_frame>  C  F  C  H  A  F  L  L  C  F  S  W :   C  R  N  Q  Q  K  N  G  G  F  F  F  T  W  R  H  P  W  S  S  T  P   : G  F  F  F  T  W  R  H  P  W  S  S  T  L   : G  V  G  T  G  R  K  M  V  G  S  L  S  H  G  D  T  R  G  V  L  H  Q  :  V  I  F  Y  Q  R  *  S  R  R  S  K  H  E  R  C  I  C  F  S  I  Q  Y  V  N  V  C  N  *  Y  S  H  I  *  K  C  *  T  M  *  V  S  H  F  D  I  Q  *  Y  D  M  H  M  K  I  Y  Y  E  Q  I  W  Q  L  *  C  V  R   </second_frame>
            <third_frame>   V  F  V  M  L  F  F  F  V  S  H   : G  V  G  T  S  R  K  M  V  G  S  F  S  H  G  D  T  R  G  V  L  H  Q  :  G  S  F  S  H  G  D  T  R  G  V  L  H  *  :  V  *  E  P  A  E  K  W  W  V  L  Y  H  M  E  T  P  V  E  F  Y  T  R :   *  F  F  I  K  D  D  P  E  D  P  S  M  K  D  A  S  V  F  L  Y  S  M  *  M  Y  V  I  S  I  P  T  Y  E  N  V  K  L  C  K  Y  L  T  S  T  F  S  S  M  T  C  T  *  K  Y  I  M  N  K  F  G  S  Y  N  V  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114423" stop="114389"/>
                    <exon start="114295" stop="114228"/>
                    <exon start="113720" stop="113679"/>
                    <exon start="113315" stop="113248"/>
                    <exon start="110633" stop="110613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFCHAFLLCFSWCRNQQKNGGFFFTWRHPWSSTPGFFFTWRHPWSSTLGVGTGRKMVGSLSHGDTRGVLHQVIFYQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114289" stop="114228"/>
                    <exon start="113720" stop="113679"/>
                    <exon start="113315" stop="113248"/>
                    <exon start="110633" stop="110593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPAEKWWVLFHMETPVEFYTRVLFHMETPVEFYTRCRNRQKNGGFFITWRHPWSFTPGDFLSKMIQKIQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="110431" PGL_stop="111082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110431" e_stop="111082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="110431" e_stop="111082" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110431" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGAACACATTATAGCTGCCAAATTTGTTCATAATATATTTTCATGTGCATGTCATACTACTGAATGTCGAAGTGAGATACTTACATAGTTTAACATTTTCATATGTGGGAATACTAATTACATACATTTACATACTGTATAGAAAAACAGATGCATCTTTCATGCTTGGATCTTCTGGATCATCTTTGATAAAAAATCACCTGTTAGCACAGAATCGCATCACATAACTTTTACAACACAAAATGATAAAAAATGTGGCAACATTAAGCTTCAACTAAGCCTCATCTTTGAATTCCTATTTCACGATTGACATAAGACATTTTATATAATAACACCAATATGAACAAAAGTATGTTATTTTTTTTTAAAACTATGTCATAGATAGATCATTTAGCAAGGTAATGTCAACCAGAATAGCATAAACACTACATTTTGTCGTATTAGAATAGAATAGAGAATTAGTGGAAGAAAATAAGAAAGCCAAATGGAATGTAAAGCATCAATTACAAATGTATGAAATGAGATCTTAATTAAAGATTAATATTATCTTTATAGTAAAAGATTGCAAAAACAGTCAAGAAAACAAAGTGACAATATGACCAAACAAAGTGAACAAAGCTCAATAGTTGTAAAGATAACAACCCTCATA</gDNA_template>
            <first_frame> I  R  T  H  Y  S  C  Q  I  C  S  *  Y  I  F  M  C  M  S  Y  Y  *  M  S  K  *  D  T  Y  I  V  *  H  F  H  M  W  E  Y  *  L  H  T  F  T  Y  C  I  E  K  Q  M  H  L  S  C  L  D  L  L  D  H  L  *  *  K  I  T  C  *  H  R  I  A  S  H  N  F  Y  N  T  K  *  *  K  M  W  Q  H  *  A  S  T  K  P  H  L  *  I  P  I  S  R  L  T  *  D  I  L  Y  N  N  T  N  M  N  K  S  M  L  F  F  F  K  T  M  S  *  I  D  H  L  A  R  *  C  Q  P  E  *  H  K  H  Y  I  L  S  Y  *  N  R  I  E  N  *  W  K  K  I  R  K  P  N  G  M  *  S  I  N  Y  K  C  M  K  *  D  L  N  *  R  L  I  L  S  L  *  *  K  I  A  K  T  V  K  K  T  K  *  Q  Y  D  Q  T  K  *  T  K  L  N  S  C  K  D  N  N  P  H  </first_frame>
            <second_frame>  F  E  H  I  I  A  A  K  F  V  H  N  I  F  S  C  A  C  H  T  T  E  C  R  S  E  I  L  T  *  F  N  I  F  I  C  G  N  T  N  Y  I  H  L  H  T  V  *  K  N  R  C  I  F  H  A  W  I  F  W  I  I  F  D  K  K  S  P  V  S  T  E  S  H  H  I  T  F  T  T  Q  N  D  K  K  C  G  N  I  K  L  Q  L  S  L  I  F  E  F  L  F  H  D  *  H  K  T  F  Y  I  I  T  P  I  *  T  K  V  C  Y  F  F  L  K  L  C  H  R  *  I  I  *  Q  G  N  V  N  Q  N  S  I  N  T  T  F  C  R  I  R  I  E  *  R  I  S  G  R  K  *  E  S  Q  M  E  C  K  A  S  I  T  N  V  *  N  E  I  L  I  K  D  *  Y  Y  L  Y  S  K  R  L  Q  K  Q  S  R  K  Q  S  D  N  M  T  K  Q  S  E  Q  S  S  I  V  V  K  I  T  T  L  I </second_frame>
            <third_frame>   S  N  T  L  *  L  P  N  L  F  I  I  Y  F  H  V  H  V  I  L  L  N  V  E  V  R  Y  L  H  S  L  T  F  S  Y  V  G  I  L  I  T  Y  I  Y  I  L  Y  R  K  T  D  A  S  F  M  L  G  S  S  G  S  S  L  I  K  N  H  L  L  A  Q  N  R  I  T  *  L  L  Q  H  K  M  I  K  N  V  A  T  L  S  F  N  *  A  S  S  L  N  S  Y  F  T  I  D  I  R  H  F  I  *  *  H  Q  Y  E  Q  K  Y  V  I  F  F  *  N  Y  V  I  D  R  S  F  S  K  V  M  S  T  R  I  A  *  T  L  H  F  V  V  L  E  *  N  R  E  L  V  E  E  N  K  K  A  K  W  N  V  K  H  Q  L  Q  M  Y  E  M  R  S  *  L  K  I  N  I  I  F  I  V  K  D  C  K  N  S  Q  E  N  K  V  T  I  *  P  N  K  V  N  K  A  Q  *  L  *  R  *  Q  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110448" stop="110660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPNLFIIYFHVHVILLNVEVRYLHSLTFSYVGILITYIYILYRKTDASFMLGSSGSSLIKNHLLAQNRIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="117575" PGL_stop="125306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117575" e_stop="117621"/>
            <exon e_start="120411" e_stop="120455"/>
            <exon e_start="122061" e_stop="122184"/>
            <exon e_start="122609" e_stop="122787"/>
            <exon e_start="123552" e_stop="123669"/>
            <exon e_start="125198" e_stop="125306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117575" e_stop="117621" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="117622" i_stop="120410" i_length="2789"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120411" e_stop="120455" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="120456" i_stop="122060" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="122061" e_stop="122184" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="122185" i_stop="122608" i_length="424"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122609" e_stop="122787" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122788" i_stop="123551" i_length="764"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123552" e_stop="123669" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="123670" i_stop="125197" i_length="1528"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125198" e_stop="125306" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117575" stop="117621"/>
              <exon start="120411" stop="120455"/>
              <exon start="122061" stop="122184"/>
              <exon start="122609" stop="122787"/>
              <exon start="123552" stop="123669"/>
              <exon start="125198" stop="125306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCCTCTGTGTTTCTGTTGGTTGTTTGCTGTATTGGGTTCTCTCT : ATTTCTCCAGCTGAGGAAACAAAGGAAACACTCTTCACTGACAAA : GGTCACAGAGAACAAAGGAACACTTCATTTACTTTGAGGAGCACATCCAAATCTGGATCTCTCATCTCCGTTACAGTAGATGGAAGAAGTTATTCGAATTGCTAACATTGAACCCCAAGAAGAC : AAAGGTGAAGATCAAGGACGTCCAAGGGTAGAATAGTAAATTTAACCTGACAAGTACACACTCTCATGATTTTAGAACGCTCCATCTTACTCATTAGCACAGAATAGACGCAATATTTTCAACACGAGAATCAGTTCTTCCATTTCTCTTGCTCCAACTCCAACAGCAACGAATTTCAG : GAGCTGGTGTCTTCATTTTATATTTGGTACGGTATTCGAATAATTTATCAAGAGCTTGACGCATGTAGAGAATGCCTAGGGGATCCACAGACTCTGGACAACAGATGCAGTTATTCTA : GTGTACCAGGAACCGATATAAAGTTGAAGGAGATCGGTCATGAACCATGTAGGCATTGAAGCAGCTGCCAATGATTTCAATGGTAACCGGTCTCTCTCAAGTCTGGATG</gDNA_template>
            <first_frame> F  S  S  V  F  L  L  V  V  C  C  I  G  F  S  L :   F  L  Q  L  R  K  Q  R  K  H  S  S  L  T  K :   V  T  E  N  K  G  T  L  H  L  L  *  G  A  H  P  N  L  D  L  S  S  P  L  Q  *  M  E  E  V  I  R  I  A  N  I  E  P  Q  E  D  :  K  G  E  D  Q  G  R  P  R  V  E  *  *  I  *  P  D  K  Y  T  L  S  *  F  *  N  A  P  S  Y  S  L  A  Q  N  R  R  N  I  F  N  T  R  I  S  S  S  I  S  L  A  P  T  P  T  A  T  N  F  R :   S  W  C  L  H  F  I  F  G  T  V  F  E  *  F  I  K  S  L  T  H  V  E  N  A  *  G  I  H  R  L  W  T  T  D  A  V  I  L  :  V  Y  Q  E  P  I  *  S  *  R  R  S  V  M  N  H  V  G  I  E  A  A  A  N  D  F  N  G  N  R  S  L  S  S  L  D  </first_frame>
            <second_frame>  S  P  L  C  F  C  W  L  F  A  V  L  G  S  L   : Y  F  S  S  *  G  N  K  G  N  T  L  H  *  Q   : R  S  Q  R  T  K  E  H  F  I  Y  F  E  E  H  I  Q  I  W  I  S  H  L  R  Y  S  R  W  K  K  L  F  E  L  L  T  L  N  P  K  K  T :   K  V  K  I  K  D  V  Q  G  *  N  S  K  F  N  L  T  S  T  H  S  H  D  F  R  T  L  H  L  T  H  *  H  R  I  D  A  I  F  S  T  R  E  S  V  L  P  F  L  L  L  Q  L  Q  Q  Q  R  I  S   : G  A  G  V  F  I  L  Y  L  V  R  Y  S  N  N  L  S  R  A  *  R  M  *  R  M  P  R  G  S  T  D  S  G  Q  Q  M  Q  L  F  * :   C  T  R  N  R  Y  K  V  E  G  D  R  S  *  T  M  *  A  L  K  Q  L  P  M  I  S  M  V  T  G  L  S  Q  V  W  M </second_frame>
            <third_frame>   L  L  C  V  S  V  G  C  L  L  Y  W  V  L  S  :  I  S  P  A  E  E  T  K  E  T  L  F  T  D  K  :  G  H  R  E  Q  R  N  T  S  F  T  L  R  S  T  S  K  S  G  S  L  I  S  V  T  V  D  G  R  S  Y  S  N  C  *  H  *  T  P  R  R   : Q  R  *  R  S  R  T  S  K  G  R  I  V  N  L  T  *  Q  V  H  T  L  M  I  L  E  R  S  I  L  L  I  S  T  E  *  T  Q  Y  F  Q  H  E  N  Q  F  F  H  F  S  C  S  N  S  N  S  N  E  F  Q  :  E  L  V  S  S  F  Y  I  W  Y  G  I  R  I  I  Y  Q  E  L  D  A  C  R  E  C  L  G  D  P  Q  T  L  D  N  R  C  S  Y  S   : S  V  P  G  T  D  I  K  L  K  E  I  G  H  E  P  C  R  H  *  S  S  C  Q  *  F  Q  W  *  P  V  S  L  K  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122716" stop="122787"/>
                    <exon start="123552" stop="123669"/>
                    <exon start="125198" stop="125256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQYFQHENQFFHFSCSNSNSNEFQELVSSFYIWYGIRIIYQELDACRECLGDPQTLDNRCSYSSVPGTDIKLKEIGHEPCRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117577" stop="117621"/>
                    <exon start="120411" stop="120455"/>
                    <exon start="122061" stop="122165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLCVSVGCLLYWVLSISPAEETKETLFTDKGHREQRNTSFTLRSTSKSGSLISVTVDGRSYSNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="125627" PGL_stop="126739"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125627" e_stop="125662"/>
            <exon e_start="125753" e_stop="125803"/>
            <exon e_start="126339" e_stop="126472"/>
            <exon e_start="126635" e_stop="126739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.898" e_score="0.972"/>
          <exon-intron don_prob="0.973" acc_prob="0.971" e_score="0.902"/>
          <exon-intron don_prob="0.000" acc_prob="0.929" e_score="0.933"/>
          <exon-only e_score="0.876"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="125627" e_stop="125662" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.898">
            <gDNA_intron_boundary i_start="125663" i_stop="125752" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="125753" e_stop="125803" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.971">
            <gDNA_intron_boundary i_start="125804" i_stop="126338" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.933">
            <gDNA_exon_boundary e_start="126339" e_stop="126472" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="126473" i_stop="126634" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="0.876">
            <gDNA_exon_boundary e_start="126635" e_stop="126739" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125627" stop="125662"/>
              <exon start="125753" stop="125803"/>
              <exon start="126339" stop="126472"/>
              <exon start="126635" stop="126739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACATCATACTCATTTGCTACTCCAGAAAATCTTG : ACATCTTAGATGGACCATTGTCAAATCGCTACTTTAGCTACTAAGGGAATG : GACAAGCAACTATTTGAAAAATACAAAGCAACGAAATATTTCTGGCAATGGACAATATTTGCAATACTGTTATGTGATTTATGTTTCCATGGTGCAAAGTACGAACAGTGGTAATAATACATTTTGTTGATCAT : AGTCTACGCATATGTGAATGCAAAATCAGACACAAATAAATGACATCAAAATTCATGTTGTTAGGCCCGTGCATAGCACGAGCAATACTCATCTTGTCTATATAT</gDNA_template>
            <first_frame> R  H  H  T  H  L  L  L  Q  K  I  L  :  T  S  *  M  D  H  C  Q  I  A  T  L  A  T  K  G  M  :  D  K  Q  L  F  E  K  Y  K  A  T  K  Y  F  W  Q  W  T  I  F  A  I  L  L  C  D  L  C  F  H  G  A  K  Y  E  Q  W  *  *  Y  I  L  L  I  I :   V  Y  A  Y  V  N  A  K  S  D  T  N  K  *  H  Q  N  S  C  C  *  A  R  A  *  H  E  Q  Y  S  S  C  L  Y   </first_frame>
            <second_frame>  D  I  I  L  I  C  Y  S  R  K  S  * :   H  L  R  W  T  I  V  K  S  L  L  *  L  L  R  E  W :   T  S  N  Y  L  K  N  T  K  Q  R  N  I  S  G  N  G  Q  Y  L  Q  Y  C  Y  V  I  Y  V  S  M  V  Q  S  T  N  S  G  N  N  T  F  C  *  S   : *  S  T  H  M  *  M  Q  N  Q  T  Q  I  N  D  I  K  I  H  V  V  R  P  V  H  S  T  S  N  T  H  L  V  Y  I  </second_frame>
            <third_frame>   T  S  Y  S  F  A  T  P  E  N  L   : D  I  L  D  G  P  L  S  N  R  Y  F  S  Y  *  G  N   : G  Q  A  T  I  *  K  I  Q  S  N  E  I  F  L  A  M  D  N  I  C  N  T  V  M  *  F  M  F  P  W  C  K  V  R  T  V  V  I  I  H  F  V  D  H  :  S  L  R  I  C  E  C  K  I  R  H  K  *  M  T  S  K  F  M  L  L  G  P  C  I  A  R  A  I  L  I  L  S  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="135809" PGL_stop="136814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135809" e_stop="136058"/>
            <exon e_start="136199" e_stop="136258"/>
            <exon e_start="136353" e_stop="136493"/>
            <exon e_start="136577" e_stop="136639"/>
            <exon e_start="136768" e_stop="136814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.548" acc_prob="1.000" e_score="0.920"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.950"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.887"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.889"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="135809" e_stop="136058" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.548" acc_prob="1.000">
            <gDNA_intron_boundary i_start="136059" i_stop="136198" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="136199" e_stop="136258" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="136259" i_stop="136352" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.887">
            <gDNA_exon_boundary e_start="136353" e_stop="136493" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136494" i_stop="136576" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.889">
            <gDNA_exon_boundary e_start="136577" e_stop="136639" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136640" i_stop="136767" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="0.915">
            <gDNA_exon_boundary e_start="136768" e_stop="136814" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135809" stop="136058"/>
              <exon start="136199" stop="136258"/>
              <exon start="136353" stop="136493"/>
              <exon start="136577" stop="136639"/>
              <exon start="136768" stop="136814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGGTGTGGCATGTGTAGACATATATCTGATGTTCATGATTAAATTTTATATACCCCTTTCCCAAATCCGCTCTTTTTAATGAATCCCAACAAAATAAATCAGTAGAGGAACACTTCTTTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATCTTTTCGGGTTGTTTCCACTCAAAGATCTGATCTTTTTCATCTAGTGTTGATCAAGTTTTCAG : TGAAGATGGTTGGATCAGATGAGAATTAGCCAGGAGTGATTAGGCCTTCAAATCTTCAAG : GAGGATTGAGGCCTGGTGTTGGAGGAAAAGTGACCGGATGGTTGGGCAAAATAGGAGGGCACTAAGCAAAATCAATAGAAATGTAATGGGAGGTCCCCCATTACACACTGCTGTTGTTCCCAAGAGAAATGACATTACTGA : AAACAAAGTCAATGCTGCTACTAACAAGATCCCTCCTGTTCTGATTCACCGTCCGGTTACAAG : GAAGTTAGCTGCGCAAATCTCAAGCCAACAGCGTCATCCAGCAGTCG</gDNA_template>
            <first_frame> R  R  C  G  M  C  R  H  I  S  D  V  H  D  *  I  L  Y  T  P  F  P  N  P  L  F  L  M  N  P  N  K  I  N  Q  *  R  N  T  S  F  L  K  I  F  D  *  F  H  G  V  L  Q  L  L  V  F  N  R  F  L  G  S  F  R  V  V  S  T  Q  R  S  D  L  F  H  L  V  L  I  K  F  S   : V  K  M  V  G  S  D  E  N  *  P  G  V  I  R  P  S  N  L  Q   : G  G  L  R  P  G  V  G  G  K  V  T  G  W  L  G  K  I  G  G  H  *  A  K  S  I  E  M  *  W  E  V  P  H  Y  T  L  L  L  F  P  R  E  M  T  L  L   : K  T  K  S  M  L  L  L  T  R  S  L  L  F  *  F  T  V  R  L  Q   : G  S  *  L  R  K  S  Q  A  N  S  V  I  Q  Q  S </first_frame>
            <second_frame>  E  G  V  A  C  V  D  I  Y  L  M  F  M  I  K  F  Y  I  P  L  S  Q  I  R  S  F  *  *  I  P  T  K  *  I  S  R  G  T  L  L  F  *  K  S  L  I  S  F  M  G  F  F  N  Y  *  S  L  I  D  F  W  D  L  F  G  L  F  P  L  K  D  L  I  F  F  I  *  C  *  S  S  F  Q  :  *  R  W  L  D  Q  M  R  I  S  Q  E  *  L  G  L  Q  I  F  K  :  E  D  *  G  L  V  L  E  E  K  *  P  D  G  W  A  K  *  E  G  T  K  Q  N  Q  *  K  C  N  G  R  S  P  I  T  H  C  C  C  S  Q  E  K  *  H  Y  *  :  K  Q  S  Q  C  C  Y  *  Q  D  P  S  C  S  D  S  P  S  G  Y  K  :  E  V  S  C  A  N  L  K  P  T  A  S  S  S  S   </second_frame>
            <third_frame>   K  V  W  H  V  *  T  Y  I  *  C  S  *  L  N  F  I  Y  P  F  P  K  S  A  L  F  N  E  S  Q  Q  N  K  S  V  E  E  H  F  F  F  E  N  L  *  L  V  S  W  G  S  S  I  T  S  L  *  S  I  S  G  I  F  S  G  C  F  H  S  K  I  *  S  F  S  S  S  V  D  Q  V  F  S :   E  D  G  W  I  R  *  E  L  A  R  S  D  *  A  F  K  S  S  R :   R  I  E  A  W  C  W  R  K  S  D  R  M  V  G  Q  N  R  R  A  L  S  K  I  N  R  N  V  M  G  G  P  P  L  H  T  A  V  V  P  K  R  N  D  I  T  E :   N  K  V  N  A  A  T  N  K  I  P  P  V  L  I  H  R  P  V  T  R :   K  L  A  A  Q  I  S  S  Q  Q  R  H  P  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136242" stop="136258"/>
                    <exon start="136353" stop="136493"/>
                    <exon start="136577" stop="136639"/>
                    <exon start="136768" stop="136813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKSSRRIEAWCWRKSDRMVGQNRRALSKINRNVMGGPPLHTAVVPKRNDITENKVNAATNKIPPVLIHRPVTRKLAAQISSQQRHPAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 437 chains have been computed
$ 
$ memory statistics:
$ 792880 bytes spliced alignments in total
$ 286 spliced alignments have been stored
$ 2772 bytes was the average size of a spliced alignment
$ 41168 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1715 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 485 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:31:00
-->
