<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:44:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="4113" stop="3177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3813" g_stop="3477" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3813" e_stop="3477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACGATGTCATAATCAATTACCGCCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGATACGTGACACTCCGATCCCCTACATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="3187" stop="4024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3487" g_stop="3724" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3487" e_stop="3724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTATCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGGCGGTAATTGATTATGACATCGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="5286" stop="4256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4986" g_stop="4579" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4986" e_stop="4579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAACTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGAGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGGAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGATAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAATTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGGCCTCTT</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="4321" stop="5474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4621" g_stop="5174" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4621" e_stop="5174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAATTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTATCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTCCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCTCGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAGTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTCCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATTATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="5644" stop="4325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5344" g_stop="4625" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5344" e_stop="4625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACATAGTAGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATAATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAACTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGAGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGGAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGATAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAATTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="5641" stop="4378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5341" g_stop="4678" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5341" e_stop="4678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACATAGTAGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATAATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAACTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGAGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGGAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGATAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTT-CCTCATTCTGCACTTGCTCAATTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="4948" stop="6956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5248" g_stop="5434" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5435" i_stop="6178" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6179" g_stop="6692" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5248" e_stop="5434"/>
          <exon e_start="6179" e_stop="6692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCTACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGTGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGAAGGTTACTCAGTCCGACCAATCCAGTCTTCACTACAGACTGTAGTTGGAGGACCACCTCAGACCGGTCAACACTTCTCTGAAAGACCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGTTGGTTATGGAAGAGGTCGTCATTCTGGAGGACGCAGTGGTCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGATAGGCAAACTGGAGCCACTATATCACAACATGGTAGGGGCAACGGATAGACAGGTGAGAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTTTGTATTGTTTGACCCTGGCTCTACAATTTCATATGTATCTTCCGCATTTGCTAATGGTCTTGATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATGTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTTGTGAGTTTCTAGATGTGTTCCCTACAGATATTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGAGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6748" stop="5606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6448" g_stop="5906" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6448" e_stop="5906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6975" stop="5614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6675" g_stop="5914" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6675" e_stop="5914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6572" stop="5646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6272" g_stop="5942" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6272" e_stop="5942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6975" stop="5715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6675" g_stop="6015" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6675" e_stop="6015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7044" stop="5786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6744" g_stop="6086" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6744" e_stop="6086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7490" stop="6215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7190" g_stop="6514" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7190" e_stop="6514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCC---ACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTTAAAA-TCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7561" stop="6252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7261" g_stop="6552" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7261" e_stop="6552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGATAACAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCC---ACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7561" stop="6369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7261" g_stop="6669" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7261" e_stop="6669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGATAACAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCC---ACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7561" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7261" g_stop="6739" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7261" e_stop="6739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGATAACAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCC---ACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7490" stop="6535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7190" g_stop="6835" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7190" e_stop="6835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCC---ACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTTAAAA-TCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="9041" stop="8264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8741" g_stop="8565" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8741" e_stop="8565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="9821" stop="11036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10120" g_stop="10434" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10435" i_stop="10718" i_length="284">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10719" g_stop="10806" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10120" e_stop="10434"/>
          <exon e_start="10719" e_stop="10806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCATAGTAAACTCTTAATAGCAAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTTTTAATAATGAGGCCTTGGTGTAAAAGAAGGCGTGATG-ACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTAATAGAAGGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGAAGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACATATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAATCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAACCAACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTC-TTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGG............................................................................................................................................................................................................................................................................................GTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="10598" stop="11675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="11375" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="11375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACATACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATGTACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGACTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATCGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTATCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAATAGTAACTCCAGCTAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATACTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310623" ref_strand="+" ref_description="SGN-E310623 [cLEZ-19-M9]">
      <seq>ctcgtgccgtttaagtggtgcaaaaggggtactatcaaaaacccaatttagggtactgtatgttatataattggggttaggaattagtgctttttattggcatttttagctaacatatttcagaatatctgaaaagtcttgttggagtctattctttatcttgatacttgtggggctttgagttgttttttgattctaagcttcagctgagacaattggtatatttccttaacaagaaccttttttttctctttaacaaaccccatttctcatctccatattgaatttgctggaagataaaaagaacaggttaatgtgaagcttgtaactttctctttgctgtttttaatagtagtaaacaaaaggaatctgctttcttttctattagtgtgagctgttatttcaccaatgctttcatttctctactttatgctctgaaagtttcatactttcttgtctctgagaattaaactactttttattttccatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="13904" stop="14987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14196" g_stop="14687" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E310623" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14196" e_stop="14687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGAA-TTTAAGTGGTGCAAAAGGGGTACTATCAAAAACCCAATTTAGGGTACTGTATGTTATATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTA</genome_strand>
        <mrna_strand>CTCGTGCCGTTTAAGTGGTGCAAAAGGGGTACTATCAAAAACCCAATTTAGGGTACTGTATGTTATATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316754" ref_strand="+" ref_description="SGN-E316754 [cTOB-5-P14]">
      <seq>tataattggggttatgaattagtgctttttattggcatttttagctaacatatttcagaatatctgaaaagtcttgttggagtctattctttatcttgatacttgtggggctttgagttgttttttgattctaagcttcagctgagacaattggtatatttccttaacaagaaccttttttttctctttaacaaaccccatttctcatctccatattgaatttgctggaagataaaaagaacaggttaatgtgaagcttgtaactttctctttgctgtttttaatagtagtaaacaaaaggaatctgctttcttttctattagtgtgagctgttatttcaccaatgctttcatttctctactttatgctctgaaagtttcatactttcttgtctctgagaattaaactactttttattttccatgttattagactaggcttgatcctagggttcttgaaaacaaacaaggggggttaaagattttatgcctagtactttggattttttatttttttacctttgttgtgtgtctataagatgctgcattgagagatttcttttgctttaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="13960" stop="15132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14260" g_stop="14832" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E316754" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14260" e_stop="14832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTATTAGACTAGGCTTGATCCTAGGGTTCTTGAAAACAAACAAGGGGGGTTAAAGATTTTATGCCTAGTACTTTGGATTTTTTATTTTTTTACCTTTGTTGTGTGTCTATAGGATGCTGCATTGAGAGATTTCTTTTGCTTTAAAGCT</genome_strand>
        <mrna_strand>TATAATTGGGGTTATGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTATTAGACTAGGCTTGATCCTAGGGTTCTTGAAAACAAACAAGGGGGGTTAAAGATTTTATGCCTAGTACTTTGGATTTTTTATTTTTTTACCTTTGTTGTGTGTCTATAAGATGCTGCATTGAGAGATTTCTTTTGCTTTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424833" ref_strand="-" ref_description="SGN-E424833 [STM-44-M3]">
      <seq>tttttttggggacaaatgttggggtggttttattatgatcagacgattggatttcccccaatggactgcaaaatgtgttttgcatacttggccagaagatatagtgaaaatttactttacttttttctggagttgtataggatattagctcctaactcattttggtgttcttcgagttttagcagaagagattattttagattggtaagaaatgactgtacattgaaaacaagaaacatcatttggggtatgatgtcttgtttcaattatgtttgtgcaagtgtaagaatttgtttgaggatttttcagagaaaaaaacattggtgattctcttgtaaagtcttgtcatatctgaaatgatcagcaatatagtggttgatcttttaaaaaaaaaaaattttgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="18029" stop="19018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18330" g_stop="18701" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="398"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E424833" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424833" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18330" e_stop="18701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCGGGACAGATGTTTGCGTTGTTTTACTATGATCAGACGATTCTATTTACCCCAATTGACTGCAAAATGTGTTTTGCATACTTGGACAGAAGATATAGTGAAAATTTACTTTTACTTTTTTCTGGAGTTGTATAGGATATTAGCTCCTAACTCATTTT-GTGTTCTTCGAGTTTTAGCAGAAGAGATTATTTTAGATTGGTAAGAAATGAACTGTACATTGAAAACAAGAAACATCATTTGGGGTAAAAGATGTCTTGTTTCAATTATGTTTGTGCAACCTGTAAGAATTTGTTTGAGGATTTCTGAGAGAAACAAACAGTGGTGATTTTCTTGTAAAGTCTTGTCATATCTGAAATGATCATCAAT</genome_strand>
        <mrna_strand>TTTTTTTGGGGACAAATGTTGGGGTGGTTTTATTATGATCAGACGATTGGATTTCCCCCAATGGACTGCAAAATGTGTTTTGCATACTTGGCCAGAAGATATAGTGAAAATTTAC-TTTACTTTTTTCTGGAGTTGTATAGGATATTAGCTCCTAACTCATTTTGGTGTTCTTCGAGTTTTAGCAGAAGAGATTATTTTAGATTGGTAAGAAATG-ACTGTACATTGAAAACAAGAAACATCATTTGGGGT--ATGATGTCTTGTTTCAATTATGTTTGTGCAA-GTGTAAGAATTTGTTTGAGGATTTTTCAGAGAAAAAAACATTGGTGATTCTCTTGTAAAGTCTTGTCATATCTGAAATGATCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217276" ref_strand="+" ref_description="SGN-E217276 [cLEL-21-A13](-)">
      <seq>cccaattgactgcaaaatgtgttttgcatacttggacagaagatatagtgaaaatttacttttacttttttctggagttgtataggatattagctcctaactcattttgtgttcttcgagttttagcagaagagattattttagattggtaagaaatgaactgtacattgaaaacaagaaacatcatttggggtaaaagatgtcttgtttcaattatgtttgtgcaacctgtaagaatttgtttgaggatttttgagagaaacaaacagtggtgattttcttgtaaagtcttgtcatatctgaaatgatcatcaatataattgtgtttttaaaaaaaaaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="18086" stop="74099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18386" g_stop="18709" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18710" i_stop="19785" i_length="1076">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19786" g_stop="19820" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="359" r_length="35" r_score="0.657"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E217276" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18386" e_stop="18709"/>
          <exon e_start="19786" e_stop="19820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTGACTGCAAAATGTGTTTTGCATACTTGGACAGAAGATATAGTGAAAATTTACTTTTACTTTTTTCTGGAGTTGTATAGGATATTAGCTCCTAACTCATTTTGTGTTCTTCGAGTTTTAGCAGAAGAGATTATTTTAGATTGGTAAGAAATGAACTGTACATTGAAAACAAGAAACATCATTTGGGGTAAAAGATGTCTTGTTTCAATTATGTTTGTGCAACCTGTAAGAATTTGTTTGAGGATTTCTGAGAGAAACAAACAGTGGTGATTTTCTTGTAAAGTCTTGTCATATCTGAAATGATCATCAATGTAATTGTGTTTTCTTTTTCTTAGTCTATTACCCCTAGTCAATTTCTTCTTTATGATGTTTTTGTACCTTGAGAGGCCACGGGCGGATCTAAGGTTTGACAAAATTCAGTAACTTTGGTCTAAATCTTCGATGGAAAAAGTAGTGATTTTTTTTGTGAAATCTTTATGGAACTCTTTGTAGAGAGTTGAAAAGGCAACAAGTACAATTTCACCATTTTTATAGTGATTATTGTGGCATTCAGGGGCAATTAATAGGAACTATTCTCAATATTTCGTATGTGTTAGCACATGAATAGTTTGGTGTTATGGCTTCCAGAAGATTTATTTGCAAAATTTTTACGAAACTCTTTAATAGGGAGTTGGGGAGCCCTACGTACAGTCTCACCATTCTTAGAATGATTTTTTGGTTTCTAGCGGTCAATTTACGAAAATTAGGCCATTTTCAGTTTGTTGTAAATATTAACCCATGAATATTTTTGTGATGACTTGGGATGATTTTTCTGCAATATCTTTACGGAACCTTCCATTGCGAATCGGGGAAACAATACATACAAGTCTCACCATATTTAGACTGTTTTTTGGATATTTATGGGCCTTTTTACATAAATATAGTGGTTTTCTCAAATTTTTTTATATTTTAGCTCATAAATATTTTTGTAATATGTCTTCTAGATGTTTTTTTTGCGAAACATTTTCGACTTGTTTAAATATTTAAAATAAATTTTGTTTCTTTATTTGTTTTGTTATAATCAAGAGAATTTATTTATTATGTGCAATTATAAATAATTTTTTTGATTAAAATTTGATAAGAAATTGGGAAGGCTACCCCTATAATCCTTTACTTAGCCCATTTTTTACCAAATTCATCTCAGCCCAACAAATTATTGGACAAAGTTGGGCTAAGAACCTTGAATTGGCGATCATGTTAAACATCTTGGGCCATGAAAACATTGGTTCACAATATTGTGTAAATGAGAGTCTTATCACTTCCTCGATTCACTTTTACTTATTACACTTTACTTTGTAAGAGATAATTTGACTAATTTTTAAAATAAAACTAAATTATCTTACTTTAACTTTTAAGATTTTAAATATAAATATTTAAAAAATTATACAAAA</genome_strand>
        <mrna_strand>CCCAATTGACTGCAAAATGTGTTTTGCATACTTGGACAGAAGATATAGTGAAAATTTACTTTTACTTTTTTCTGGAGTTGTATAGGATATTAGCTCCTAACTCATTTTGTGTTCTTCGAGTTTTAGCAGAAGAGATTATTTTAGATTGGTAAGAAATGAACTGTACATTGAAAACAAGAAACATCATTTGGGGTAAAAGATGTCTTGTTTCAATTATGTTTGTGCAACCTGTAAGAATTTGTTTGAGGATTTTTGAGAGAAACAAACAGTGGTGATTTTCTTGTAAAGTCTTGTCATATCTGAAATGATCATCAATATAATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAAAAAAAAAACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266368" ref_strand="+" ref_description="SGN-E266368 [cLEI-3-O7]">
      <seq>ttttttaatgtcaaaaaacttggacaacatgtacttgggaggaacaatatgcacctcaaaagacattataatactcctagttatgaaaaaatgtacaatattttggttacataatactcctcctgagagattctccaaacaagaaatgaaccagagggagatttatgtgtgaagaaaagctgcgtgcttgctatactctattcaacttacactaaattccttgtttaatgtttcaaagacaaattcttcttacaaaagaatatagccaaaagaaagaagaagaaaaaaaaaagaattcagaagataaagaaattacattgacacagtgggaggggggttttgcttaaaatgaacactattcaccatttcttaatggttttctctattcatagatgctgcatttgctcaaccatctgctctaatgtaactttgcttcatcatcttttacgggtttccaacggtttgcggagaggcgataagtctccacaatttccccccattgcttactcttctcatttacaggaatgtaccaaaggtcaggttcagcatctaattctttccaactaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="26800" stop="27970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27100" g_stop="27670" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E266368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27100" e_stop="27670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTAATGTCAAAAAACTTGGACAACATGTACTTTGGAGGAACAATATGCACCTCAAAAGACATTATAATACTCCTAGTTATGAAAAAATGTACAATATTTTGGTTACATAATACTCCTCCTGAGAGATTCTCCAAACAAGAAATGAACCAGAGGGAGATTTATGTGTGAAGAAAAGCTGCGTGCTTGCTATACTCTATTCAACTTCCACTAAATTCCTTGTTTAATGTTTCAAAGACAAATTCTTCTTACAAAAGAATATAGCCAAAAGAAAGAAGAAGAAAAAAAAAAGAATTCAGAAGATAAAGAAATTACATTGACACAGTGGGAGGGGGGTTTTGCTTAAAATGAACACTATTCACCATTTCTTAATGGTTTTCTCTATTCATAGATGCTGCATTTGCTCAACCATCTGCTCTAATGTAACTTTGCTTCATCATCTTTTACGGGTTTCCAACGGTTTGCGGAGAGGCGATAAGTCTCCACAATTTCCCCCCATTGCTTACTCTTCTCATTTACAGGAATGTACCAAAGGTCAGGTTCAGCATCTAATTCTTTCCAACTAATATT</genome_strand>
        <mrna_strand>TTTTTTAATGTCAAAAAACTTGGACAACATGTACTTGGGAGGAACAATATGCACCTCAAAAGACATTATAATACTCCTAGTTATGAAAAAATGTACAATATTTTGGTTACATAATACTCCTCCTGAGAGATTCTCCAAACAAGAAATGAACCAGAGGGAGATTTATGTGTGAAGAAAAGCTGCGTGCTTGCTATACTCTATTCAACTTACACTAAATTCCTTGTTTAATGTTTCAAAGACAAATTCTTCTTACAAAAGAATATAGCCAAAAGAAAGAAGAAGAAAAAAAAAAGAATTCAGAAGATAAAGAAATTACATTGACACAGTGGGAGGGGGGTTTTGCTTAAAATGAACACTATTCACCATTTCTTAATGGTTTTCTCTATTCATAGATGCTGCATTTGCTCAACCATCTGCTCTAATGTAACTTTGCTTCATCATCTTTTACGGGTTTCCAACGGTTTGCGGAGAGGCGATAAGTCTCCACAATTTCCCCCCATTGCTTACTCTTCTCATTTACAGGAATGTACCAAAGGTCAGGTTCAGCATCTAATTCTTTCCAACTAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369369" ref_strand="+" ref_description="SGN-E369369 [TUS-25-O8](-)">
      <seq>gttcattttaagcaaaacccccctccccctgtgtcaaagtaatttctttatcttttgaattcttttttttttttttttctttcttttggctatattcttttgtaaaaaaaatttgtctttgaaacattaaacaaggaatttagtggaagttgaataaagtatagcaagcacgcagcttttcttcacacataaatctccctttggttcattttttgtttggagaatctctcaggaggagtattatgtaaccaaaatattgtacattttttcataactaggagtattataatgtcttttgaggtgcatattgttcctcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="27753" stop="26829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27453" g_stop="27134" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="321" polyA_stop="349"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E369369" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27453" e_stop="27134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTAAGCAAAACCCCCCTCCCACTGTGTCAATGTAATTTCTTTATCTTCTGAATTCTTTTTTTTTTCTTCTTCTTTCTTTTGGCTATATTCTTTTGTAAGAAGAATTTGTCTTTGAAACATTAAACAAGGAATTTAGTGGAAGTTGAATAGAGTATAGCAAGCACGCAGCTTTTCTTCACACATAAATCTCCCTCTGGTTCATTTCTTGTTTGGAGAATCTCTCAGGAGGAGTATTATGTAACCAAAATATTGTACATTTTTTCATAACTAGGAGTATTATAATGTCTTTTGAGGTGCATATTGTTCCTCCAAA</genome_strand>
        <mrna_strand>GTTCATTTTAAGCAAAACCCCCCTCCCCCTGTGTCAAAGTAATTTCTTTATCTTTTGAATTCTTTTTTTTTTTTTTTTCTTTCTTTTGGCTATATTCTTTTGTAAAAAAAATTTGTCTTTGAAACATTAAACAAGGAATTTAGTGGAAGTTGAATAAAGTATAGCAAGCACGCAGCTTTTCTTCACACATAAATCTCCCTTTGGTTCATTTTTTGTTTGGAGAATCTCTCAGGAGGAGTATTATGTAACCAAAATATTGTACATTTTTTCATAACTAGGAGTATTATAATGTCTTTTGAGGTGCATATTGTTCCTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376885" ref_strand="+" ref_description="SGN-E376885 [TUS-19-F23]">
      <seq>gaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatatacacaaaagaattggctttagctttcttgctgttgacagcttcactaaggagcctactatcagctcaaggaatccacttttacttcttgctgtttcaaggtatatcattcctgctcgttggcctagacttgatcggtgaacaggtcgattaaatctttcatagcttagggataaatattagttggaaagaattagatgctgaacctgacctttggtacattcctgtaaatgagaagagtaagcaatggggggaaattgtggagacttatcgcctcttcgcaaaccgttggaaacccgtaaaagatgatgaagcaaagttacattagagcagatggttgagcaaatgcagcatctatgaatagagaaaaccatcaagaaatggtgaatagtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28253" stop="27150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27953" g_stop="27450" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E376885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27953" e_stop="27450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACCATTAAGAAATGGTGAATAGTGTTC</genome_strand>
        <mrna_strand>GAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTTCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACCATCAAGAAATGGTGAATAGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231226" ref_strand="+" ref_description="SGN-E231226 [cLED-5-F1]">
      <seq>gaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatatacacaaaagaattggctttagctttcttgctgttgacagcttcactaaggagcctactatcagctcaaggaatccacttttacttcttgctgtttcaaggtatatcattcctgctcgttggcctagacttgatcggtgaacaggtcgattaaatctttcatagcttagggataaatattagttggaaagaattagatgctgaacctgacctttggtacattcctgtaaatgagaagagtaagcaatggggggaaattgtggagacttatcgcctctccgcaaaccgttggaaacccgtaaaagatgatgaagcaaagttacattagagcagatggttgagcaaatgcagcatctatgaatagagaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28253" stop="27174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27953" g_stop="27474" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E231226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27953" e_stop="27474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACC</genome_strand>
        <mrna_strand>GAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228142" ref_strand="+" ref_description="SGN-E228142 [cLED-2-L18]">
      <seq>gaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatatacacaaaagaattggctttagctttcttgctgttgacagcttcactaaggagcctactatcagctcaaggaatccacttttacttcttgctgtttcaaggtatatcattcctgctcgttggcctagacttgatcggtgaacaggtcgattaaatctttcatagcttagggataaatattagttggaaagaattagatgctgaacctgacctttggtacattcctgtaaatgagaagagtaagcaatggggggaaattgtggagacttatcgcctctccgcaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28253" stop="27259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27953" g_stop="27559" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E228142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27953" e_stop="27559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACC</genome_strand>
        <mrna_strand>GAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369370" ref_strand="+" ref_description="SGN-E369370 [TUS-25-O8]">
      <seq>tcattcctgaggcgacgctcccatcatgggtcgtctcttacgtccctgccaccatgtcatttcttaatatacttccggcgcctaaatctttcccattcatcgtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatgggtagtcaccaagaaatcaggacgttcctctgagggcgatcttgcttcgttagctgaggaaaaaccaaaacaccagcgagttgcttcagaagaatggacagcgaccaagaaatcaggacgttcctctgagggcgatcttactttgttggtcgatgggaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatatacacaaaagaattggctttagctttcttgctgttgacagcttcactaaggagcctactatcagctcaaggaatccacttttacttcttgctgtttcaaggtatatcattcctgctcgttggcctagacttgatcggtgaacaggtcgattaaatctttcatagcttagggataaatattagttggaaagaattagatgctgaacctgacctttggtacattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28602" stop="27320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28302" g_stop="27620" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E369370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28302" e_stop="27620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCT</genome_strand>
        <mrna_strand>TCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255368" ref_strand="+" ref_description="SGN-E255368 [cLEG-30-F1]">
      <seq>tcattcctgaggcgacgctcccatcatgggtcgtctcttacgtccctgccaccatgtcatttcttaatatacttccggcgcctaaatctttcccattcatcgtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatgggtagtcaccaagaaatcaggacgttcctctgagggcgatcttgcttcgttagctgaggaaaaaccaaaacaccagcgagttgcttcagaagaatggacagcgaccaagaaatcaggacgttcctctgagggcgatcttactttgttggtcgatgggaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatatacacaaaagaattggctttagctttcttgctgttgacagcttcactaaggagcctactatcagctcaaggaatccacttttacttcttgctgtttcaaggtatatcattcctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28602" stop="27428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28302" g_stop="27728" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E255368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28302" e_stop="27728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTC</genome_strand>
        <mrna_strand>TCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208859" ref_strand="+" ref_description="SGN-E208859 [cLEC-51-I6]">
      <seq>ttcattcactctgttttgcataatcctcccaatgacaatgttcattcctgaggcgacgctcccatcatgggtcgtctcttacgtccctgccaccatgtcatttcttaatatacttccggcgcctaaatctttcccattcatcgtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatgggtagtcaccaagaaatcaggacgttcctctgagggcgatcttgcttcgttagctgaggaaaaaccaaaacaccagcgagttgcttcagaagaatggacagcgaccaagaaatcaggacgttcctctgagggcgatcttactttgttggtcgatgggaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatattcacaaaagaattggctttagctttcttgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28643" stop="27510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28343" g_stop="27810" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E208859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28343" e_stop="27810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTT</genome_strand>
        <mrna_strand>TTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATTCACAAAAGAATTGGCTTTAGCTTTCTTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471233" ref_strand="+" ref_description="SGN-E471233 [cSTB-23-C4]">
      <seq>gtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatgggtagtcaccaagaaatcaggacgttcctctgagggtgatcttgcttcgttagctgaggaaaaaccaaaacaccagcgagttgcttcggaagaatggacagcgaccaagaaatcaggacattcctctgagggtgatcttactttgttggtcgatgggaaaccaaaacaccaacgaggtgtttcagtgcctgatttggaggaactaagagaggaaattaaagagaaggagaagaaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28501" stop="27573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28201" g_stop="27872" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E471233" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28201" e_stop="27872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCT</genome_strand>
        <mrna_strand>GTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGTGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCGGAAGAATGGACAGCGACCAAGAAATCAGGACATTCCTCTGAGGGTGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCAGTGCCTGATTTGGAGGAACTAAGAGAGGAAATTAAAGAGAAGGAGAAGAAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205055" ref_strand="+" ref_description="SGN-E205055 [cLEC-16-F10]">
      <seq>attattaaatcaaagataagcatatggaagaagggcaatttgatatttcttttcttccttttgaggaagttggtattgccattttattcattcactctgttttgcataatcctcccaatgacaatgttcattcctgaggcgacgctcccatcatgggtcgtctcttacgtccctgccaccatgtcatttcttaatatacttccggcgcctaaatctttcccattcatcgtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatgggtagtcaccaagaaatcaggacgttcctctgagggcgatcttgcttcgttagctgaggaaaaaccaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="28716" stop="27737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28536" g_stop="28522" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107">
            <donor d_prob="0.859" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28414" g_stop="28037" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="393" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E205055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28536" e_stop="28522"/>
          <exon e_start="28414" e_stop="28037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTAAATCAAAGGTATTGTGGAATGCATCCATTCAAGTGATATCCGATTCTATTTGTTAAGTTTTAGCATATTTGGATGTTGTGCCTAACAATAATGCTTGCAATATGGTTGGATGCAGATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACAC</genome_strand>
        <mrna_strand>ATTATTAAATCAAAG...........................................................................................................ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588618" ref_strand="+" ref_description="SGN-E588618 [42174]">
      <seq>ttgaagtggagcagcaggtgaatggtatttttctgaatttctttggctttaatgggactgctggagtatggaggattaaggcattagaagaatctggtggttggttggagcggacgaccgttgaagatatggacattgcagtcagggctcatctccatgggtggaaatttatatttctcaatgatgtagagtgtcagtgtgagttaccggagatcatatgaagcgtataggaagcagcaacatagatggcattcggggccaatgcagttgtttcgtgtctgtttacctgccatcattaaatcgaagataagcatatggaagaagggcaatttgatatttcttttcttccttttgaggaaattgatattgccattttattcattcactctgttttgcataatcctcccaatgacaatgttcattcctgaggcgacgctcccatcatgggttgtctcttacgtccctgctaccatgtcatttctcaatatacttccgtcacctaaatctttcccattcattgtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="29221" stop="27810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28921" g_stop="28731" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28635" g_stop="28522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="306" r_length="115" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107">
            <donor d_prob="0.859" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28414" g_stop="28110" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="611" r_length="305" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E588618" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28921" e_stop="28731"/>
          <exon e_start="28635" e_stop="28522"/>
          <exon e_start="28414" e_stop="28110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAGGTAAAATTCATTGCAAAAGCTTCGTTTTCGAGTATAGCTTTATTGAAAGTAGTTGCTTTGTGTTGAGCCTAAAGAAGAATTTATTGGTACTTTAGTGTCAGTGTGAGTTACCGGA-ATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAGGTATTGTGGAATGCATCCATTCAAGTGATATCCGATTCTATTTGTTAAGTTTTAGCATATTTGGATGTTGTGCCTAACAATAATGCTTGCAATATGGTTGGATGCAGATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATG</genome_strand>
        <mrna_strand>TTGAAGTGGAGCAGCAGGTGAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTCCATGGGTGGAAATTTATATTTCTCAATGATGTAGAG...............................................................................................TGTCAGTGTGAGTTACCGGAGATCATATGAAGCGTATAGGAAGCAGCAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTGTCTGTTTACCTGCCATCATTAAATCGAAG...........................................................................................................ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAATTGATATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTTGTCTCTTACGTCCCTGCTACCATGTCATTTCTCAATATACTTCCGTCACCTAAATCTTTCCCATTCATTGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256317" ref_strand="+" ref_description="SGN-E256317 [cLEG-37-M7]">
      <seq>cagctatgtcaaagactacgaatttgttaccattttcgatgctgatttccagcctatgcctgattttcttaaaagaactgtcccttatttcaaggataatgatgacataggattggttcaagcaagatggtcttttgtgaacaaggatgaaaatctacttacaagattgcagcacattaatttggcttttcattttgaagtggagcagcaggttaatggtatttttctgaatttctttggctttaatgggactgctggagtatggaggattaaggcattagaagaatctggtggttggttggagcggacgaccgttgaagatatggacattgcagtcagggctcatctacatgggtggaaatttatctttctcaatgatgtagagtgtcagtgtgagttaccggaatcatatgaagcgtataggaagcaacaacatagatggcattcggggccaatgcagttgtttcgtctctgtttacctgccattattaaatcaaagataagcatatggaagaagggcaatttgatatttcttttcttccttttgaggaagttggtattgccattttattcattcactctgttttgcataatcctcccaatgacaatgttcattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="29512" stop="27996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29212" g_stop="29119" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29021" g_stop="28731" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="385" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28635" g_stop="28522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="499" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28414" g_stop="28296" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="618" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E256317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29212" e_stop="29119"/>
          <exon e_start="29021" e_stop="28731"/>
          <exon e_start="28635" e_stop="28522"/>
          <exon e_start="28414" e_stop="28296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAGGTATATTCGATTACCTTCATATGTGATGTAATTTGTGTTGTATGCTATCACTTTAGTGTAGAATGTGGTGCTTATGATGTGAGTGGTTTGTTTGTAGGATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAGGTAAAATTCATTGCAAAAGCTTCGTTTTCGAGTATAGCTTTATTGAAAGTAGTTGCTTTGTGTTGAGCCTAAAGAAGAATTTATTGGTACTTTAGTGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAGGTATTGTGGAATGCATCCATTCAAGTGATATCCGATTCTATTTGTTAAGTTTTAGCATATTTGGATGTTGTGCCTAACAATAATGCTTGCAATATGGTTGGATGCAGATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCC</genome_strand>
        <mrna_strand>CAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG.................................................................................................GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAG...............................................................................................TGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAG...........................................................................................................ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202457" ref_strand="+" ref_description="SGN-E202457 [cLEC-6-E8]">
      <seq>taatcttaagtcagctatgaattgcagctatgtcaaagactacgaatttgttaccattttcgatgctgatttccagcctatgcctgattttcttaaaagaactgtcccttatttcaaggataatgatgacataggattggttcaagcaagatggtcttttgtgaacaaggatgaaaatctacttacaagattgcagcacattaatttggcttttcattttgaagtggagcagcaggttaatggtatttttctgaatttctttggctttaatgggactgctggagtatggaggattaaggcattagaagaatctggtggttggttggagcggacgaccgttgaagatatggacattgcagtcagggctcatctacatgggtggaaatttatctttctcaatgatgtagagtgtcagtgtgagttaccggaatcatatgaagcgtataggaagcaacaacatagatggcattcggggccaatgcagttgtttcgtctctgtttacctgccattattaaatcaaagataagcatatggaagaagggcaatttgatatttcttttcttccttttgaggaagttggtattgccattttattcattcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="29536" stop="28032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29236" g_stop="29119" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29021" g_stop="28731" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="409" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28635" g_stop="28522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="523" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28414" g_stop="28332" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="606" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E202457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29236" e_stop="29119"/>
          <exon e_start="29021" e_stop="28731"/>
          <exon e_start="28635" e_stop="28522"/>
          <exon e_start="28414" e_stop="28332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAGGTATATTCGATTACCTTCATATGTGATGTAATTTGTGTTGTATGCTATCACTTTAGTGTAGAATGTGGTGCTTATGATGTGAGTGGTTTGTTTGTAGGATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAGGTAAAATTCATTGCAAAAGCTTCGTTTTCGAGTATAGCTTTATTGAAAGTAGTTGCTTTGTGTTGAGCCTAAAGAAGAATTTATTGGTACTTTAGTGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAGGTATTGTGGAATGCATCCATTCAAGTGATATCCGATTCTATTTGTTAAGTTTTAGCATATTTGGATGTTGTGCCTAACAATAATGCTTGCAATATGGTTGGATGCAGATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCT</genome_strand>
        <mrna_strand>TAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG.................................................................................................GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAG...............................................................................................TGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAG...........................................................................................................ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697399" ref_strand="+" ref_description="SGN-E697399 [FA02DA07]">
      <seq>ccttgaaggaaggtgccaatatcatatacaggcatagagtgatcagagagggttataaagctggtaatcttaagtcagctatgaattgcagctatgtcaaagactacgaatttgttaccattttcgatgctgatttccagcctatgcctgattttcttaaaagaactgtcccttatttcaaggataatgatgacataggattggttcaagcaagatggtcttttgtgaacaaggatgaaaatctacttacaagattgcagcacattaatttggcttttcattttgaagtggagcagcaggttaatggtatttttctgaatttctttggctttaatgggactgctggagtatggaggattaaggcattagaagaatctggtggttggttggagcggacgaccgttgaagatatggacattgcagtcagggctcatctacatgggtggaaatttatctttctcaatgatgtagagtgtcagcgtgagttaccggaatcatatgaagcgtataggaagcaacaacatagatggcattcggggccaatgcagttgtttcgtctctgtttacctgccattattaaatccaagataagcatatggaagaagggcaatttgatatctccttttcttccttttgaggaacgtggtaattgccattttattcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="29596" stop="28037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29300" g_stop="29119" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29021" g_stop="28731" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="473" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28635" g_stop="28522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="587" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28414" g_stop="28337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="667" r_length="80" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E697399" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29300" e_stop="29119"/>
          <exon e_start="29021" e_stop="28731"/>
          <exon e_start="28635" e_stop="28522"/>
          <exon e_start="28414" e_stop="28337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAGGTATATTCGATTACCTTCATATGTGATGTAATTTGTGTTGTATGCTATCACTTTAGTGTAGAATGTGGTGCTTATGATGTGAGTGGTTTGTTTGTAGGATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAGGTAAAATTCATTGCAAAAGCTTCGTTTTCGAGTATAGCTTTATTGAAAGTAGTTGCTTTGTGTTGAGCCTAAAGAAGAATTTATTGGTACTTTAGTGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAGGTATTGTGGAATGCATCCATTCAAGTGATATCCGATTCTATTTGTTAAGTTTTAGCATATTTGGATGTTGTGCCTAACAATAATGCTTGCAATATGGTTGGATGCAGATAAGCATATGGAAGAAGGGCAATTTGATAT-TTCTTTTCTTCCTTTTGAGGAAGTTGGT-ATTGCCATTTTATTCATTC</genome_strand>
        <mrna_strand>CCTTGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG.................................................................................................GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAG...............................................................................................TGTCAGCGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCCAAG...........................................................................................................ATAAGCATATGGAAGAAGGGCAATTTGATATCTCCTTTTCTTCCTTTTGAGGAACGTGGTAATTGCCATTTTATTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213969" ref_strand="+" ref_description="SGN-E213969 [cLEC-80-G18]">
      <seq>tcagatccctatgtgtaatgaaaaagaggtttatcagcaatccattggtgctgtgtgttgtttggagtggcctaaatcaagattgttgattcaagttcttgatgattcagatgatccagttactcagacattgatcaatgaagaggttcgtaagtggcagaaggaaggtgccaatatcatatacaggcatagagtgatcagagagggttataaagctggtaatcttaagtcagctatgaattgcagctatgtcaaagactacgaatttgttaccattttcgatgctgatttccagcctatgcctgattttcttaaaagaactgtcccttatttcaaggataatgatgacataggattggttcaagcaagatggtcttttgtgaacaaggatgaaaatctacttacaagattgcagcacattaatttggcttttcattttgaagtggagcagcaggttaatggtatttttctgaatttctttggctttaatgggactgctggagtatggaggattaaggcattagaagaatctggtggttggttggagcggacgaccgttgaagatatggacattgcagtcagggctcatctacatgggtggaaatttatctttctncatgatgtagagtgtcagtgtgagttaccggaatcatatgaagcgtataggaagcaacaacatagatggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="29863" stop="28275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29563" g_stop="29536" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29535" i_stop="29428" i_length="108">
            <donor d_prob="0.946" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29427" g_stop="29119" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="337" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29021" g_stop="28731" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="628" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28635" g_stop="28575" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="689" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E213969" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29563" e_stop="29536"/>
          <exon e_start="29427" e_stop="29119"/>
          <exon e_start="29021" e_stop="28731"/>
          <exon e_start="28635" e_stop="28575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCCCTATGTGTAATGAAAAAGAGGTAAAACTATAGTAAATTTTTTTTTTGTCTTTCCAAGATTTTGTGTTTAATTGTTTATCAAGAACTCATTTTTATATTGTCGGTGGGAATTGTTGTTATTTTTATCAGGTTTATCAGCAATCCATTGGTGCTGTGTGTTGTTTGGAGTGGCCTAAATCAAGATTGTTGATTCAAGTTCTTGATGATTCAGATGATCCAGTTACTCAGACATTGATCAATGAAGAGGTTCGTAAGTGGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAGGTATATTCGATTACCTTCATATGTGATGTAATTTGTGTTGTATGCTATCACTTTAGTGTAGAATGTGGTGCTTATGATGTGAGTGGTTTGTTTGTAGGATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAGGTAAAATTCATTGCAAAAGCTTCGTTTTCGAGTATAGCTTTATTGAAAGTAGTTGCTTTGTGTTGAGCCTAAAGAAGAATTTATTGGTACTTTAGTGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATT</genome_strand>
        <mrna_strand>TCAGATCCCTATGTGTAATGAAAAAGAG............................................................................................................GTTTATCAGCAATCCATTGGTGCTGTGTGTTGTTTGGAGTGGCCTAAATCAAGATTGTTGATTCAAGTTCTTGATGATTCAGATGATCCAGTTACTCAGACATTGATCAATGAAGAGGTTCGTAAGTGGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG.................................................................................................GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTNCATGATGTAGAG...............................................................................................TGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438137" ref_strand="+" ref_description="SGN-E438137 [cSTA-6-C14]">
      <seq>ttcagcttaacctccgtcgtacgccgtcgtgtcgctgccggtcggactgattctaccgacaacagctccactgagaatccggctgtcaagaaccggctctatacttgcataaagatctttctatggttgtcggtaatactgttagggtttgaaataacagcttatatcaaaggctggtactttagcgcaacagatcttcaattacaggatttgtactcagtggatactcatacattcgctaatccattagctgtgcaaagcgtctttgattggatttactcaaaatgggtgttgattaggggggagtatcttgctcctcctcttcaatttttagctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30360" stop="29421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30060" g_stop="29721" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E438137" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30060" e_stop="29721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAGTATTTGTACTCATTGGATTTTCACAAATTTGCTAATCCATTAGCTGTGCAAAGTGTTTTTGATTGGTTTTACTCAAAATGGGTGTTGATTAGGGTGGAGTATCTTGCTCCTCCTCTTCAATTTTTAGCTAATG</genome_strand>
        <mrna_strand>TTCAGCTTAACCTCCGTCGTACGCCGTCGTGTCGCTGCCGGTCGGACTGATTCTACCGACAACAGCTCCACTGAGAATCCGGCTGTCAAGAACCGGCTCTATACTTGCATAAAGATCTTTCTATGGTTGTCGGTAATACTGTTAGGGTTTGAAATAACAGCTTATATCAAAGGCTGGTACTTTAGCGCAACAGATCTTCAATTACAGGATTTGTACTCAGTGGATACTCATACATTCGCTAATCCATTAGCTGTGCAAAGCGTCTTTGATTGGATTTACTCAAAATGGGTGTTGATTAGGGGGGAGTATCTTGCTCCTCCTCTTCAATTTTTAGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442022" ref_strand="+" ref_description="SGN-E442022 [cSTA-31-B24]">
      <seq>gtctcttcttatctcttctctttctggactctgaaatgagttcaagaattcaaaaatccaacaccctttagttttttccatctgggtttactagcattgtgttgatttgaggtgaaaaacagataaagattcaatctttacagtttttaagtgattttcccatctgggtctgtttcaagaatctcaacaatggcaccttcttttacctggtggggtaaagaaacccataggggtacaccagtagtagtaaaaatggagaatccaaacaattggtcaatggttgagcttgaaggaccatcagaagatgatttcttgttaccaaacgatgatgtttcttcaatgtctccttataaacgtgaaaaagtcagaaacaagaatgctaaacagcttacatgggttcttcttcttaaggctcataaagctgctggttgtttaacttctatagcatcagcattgttcagcttagcctccgtcgtacgccgccgtgtcgctgccggtcggactgattctaccgacaacagctccactgagaatccggctgtcaagaaccggttctatacttgcataaagatctttctttggttgtcggtaatcttgttagggtttgaaataacagcttatttcaagggctggtactttagcgcaacagatcttcaattacagtatttgtactcattggattttcatacatttgctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30808" stop="29517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30508" g_stop="29817" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E442022" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30508" e_stop="29817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAG---------AATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAGTATTTGTACTCATTGGATTTTCACAAATTTGCTAATC</genome_strand>
        <mrna_strand>GTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTT-TTTCCATCTGGGTTTACTAGCATTGTGTTGATTTGAGGTGAAAAACAGATAAAGATTCAATCTTTACAGTTTTTAAGTGATTTTCCCATCTGGGTCTGTTTCAAGAATCTCAACAATGGCACCTTCTTTTACCTGGTGGGGTAAAGAAACCCATAGGGGTACACCAGTAGTAGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTCAGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTACGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACCGACAACAGCTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAGGGCTGGTACTTTAGCGCAACAGATCTTCAATTACAGTATTTGTACTCATTGGATTTTCATACATTTGCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739566" ref_strand="+" ref_description="SGN-E739566 [LC17DG12]">
      <seq>cgtcttctctctctctctctctctctacattcaatatactgttttgcaaattttcatattccctttataaacctctgtgtgtgtgtgagtgagtgtgtgctttctgtgtctgtctcttcttatctcttctctttctggactctgaaatgagttcaagaattcaaaaatccaacaccctttagtttcttttcatctgggtttgctagcattgtgttgatttgagctgaaaaacagataaagattcaatctttacatctttaaagtgattttgccatctgggtctgtttcaagaatggcaccttcatttacctggtggggtaaagaaactcataggggtacaccagtagtggtaaaaatggagaatccaaacaattggtcaatggttgagcttgaaggaccatcagaagatgatttcttgttaccaaacgatgatgtttcttcaatgtctccttataaacgtgaaaaagttcgaaacaagaatgctaaacagcttacatgggttcttcttcttaaggctcataaagctgctggttgtttaacttctatagcatcagcattgttcagcttagcctccgtcgtgcgccgccgtgtcgctgccggtcggactgattctacagacaacagttccactgagaatccggctgtcaagaaccggttctatacttgcataaagatctttctttggttgtcggtaatcttgttagggtttgaaataacagcttatttcagaggctggtactttagtgcaccagatcttcaattacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30918" stop="29554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30619" g_stop="29854" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E739566" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30619" e_stop="29854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTCTCTCTCTCTCTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAGAATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAG</genome_strand>
        <mrna_strand>CGTCTTCTCTCTCTCTCTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAGAATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAGAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442023" ref_strand="+" ref_description="SGN-E442023 [cSTA-31-B24]">
      <seq>gtctcttcttatctcttctctttctggactctgaaatgagttcaagaattcaaaaatccaacaccctttagttttttccatctgggtttactagcattgtgttgatttgaggtgaaaaacagataaagattcaatctttacagtttttaagtgattttcccatctgggtctgtttcaagaatctcaacaatggcaccttcttttacctggtggggtaaagaaacccataggggtacaccagtagtagtaaaaatggagaatccaaacaattggtcaatggttgagcttgaaggaccatcagaagatgatttcttgttaccaaacgatgatgtttcttcaatgtctccttataaacgtgaaaaagtcagaaacaagaatgctaaacagcttacatgggttcttcttcttaaggctcataaagctgctggttgtttaacttctatagcatcagcattgttcagcttagcctccgtcgtacgccgccgtgtcgctgccggtcggactgattctaccgacaacagctccactgagaatccggctgtcaagaaccggttctatacttgcataaagatctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30808" stop="29638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30508" g_stop="29938" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E442023" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30508" e_stop="29938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAG---------AATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTT</genome_strand>
        <mrna_strand>GTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTT-TTTCCATCTGGGTTTACTAGCATTGTGTTGATTTGAGGTGAAAAACAGATAAAGATTCAATCTTTACAGTTTTTAAGTGATTTTCCCATCTGGGTCTGTTTCAAGAATCTCAACAATGGCACCTTCTTTTACCTGGTGGGGTAAAGAAACCCATAGGGGTACACCAGTAGTAGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTCAGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTACGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACCGACAACAGCTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483633" ref_strand="+" ref_description="SGN-E483633 [cSTE-10-E2]">
      <seq>ctctctctctacattcaatatactgttttgcaaattttcatattccctttataaacctgtgtgtgtgtgtgagtgtatttttgtgtctctgtgtctgtctcttcttatctcttctctttctggactctgaaatgagttcaagaattcaaaaatccaacaccctttagttttttccatctgggtttactagcattgtgttgatttgaggtgaaaaacagataaagattcaatctttacagtttttaagtgattttcccatctgggtctgtttcaagaatctcaacaatggcaccttcttttacctggtggggtaaagaaacccataggggtacaccagtagtagtaaaaatggagaatccaaacaattggtcaatggttgagcttgaaggaccatcagaagatgatttcttgttaccaaacgatgatgtttcttcaatgtctccttataaacgtgaaaaagtcagaaacaagaatgctaaacagcttacatgggttcttcttcttaaggctcataaagctgctggttgtttaacttctatagcatcagcattgttcagcttancctccgtcgtacgccgccgtgtcgctgcccggtcgactgattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30903" stop="29705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30603" g_stop="30005" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E483633" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30603" e_stop="30005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTT-TCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAG---------AATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTAC</genome_strand>
        <mrna_strand>CTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTGTGTGTGTGTGTGAGTGTATTTTTGTGTCTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTT-TTTCCATCTGGGTTTACTAGCATTGTGTTGATTTGAGGTGAAAAACAGATAAAGATTCAATCTTTACAGTTTTTAAGTGATTTTCCCATCTGGGTCTGTTTCAAGAATCTCAACAATGGCACCTTCTTTTACCTGGTGGGGTAAAGAAACCCATAGGGGTACACCAGTAGTAGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTCAGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTANCCTCCGTCGTACGCCGCCGTGTCGCTGCCCGGTCGACTGATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477102" ref_strand="+" ref_description="SGN-E477102 [cSTB-47-A14]">
      <seq>caatatactgttttgcaaattttcatattccctttataaacctctgtgtgtgtgtgagtgtgtgtatttttgtgtctctctgtgtctgtctcttctctttctggactctgaaatgagttcaagaattcaaaaatccaacaccctttagttttttccatctgggtttactagcattgtgttgatttgaggtgaaaaacagataaagattcaatctttacagtttttaagtgattttcccatctgggtctgtttcaagaatctcaacaatggcaccttcttttacctggtggggtaaagaaacccataggggtacaccagtagtagtaaaaatggagaatccaaacaattggtcaatggttgagcttgaaggaccatcagaagatgatttcttgttaccaaacgatgatgtttcttcaatgtctccttataaacgtgaaaaagtcagaaacaagaatgctaaacagcttacatgggttcttcttcttaaggctcataaagctgcaggttgtttaacttctatagcatcagcattattcagcttagcctccgtcgtacgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30888" stop="29735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30588" g_stop="30035" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E477102" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30588" e_stop="30035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAG---------AATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCG</genome_strand>
        <mrna_strand>CAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGT--GTGTGT-ATTTTTGTGTCTCTCTGTGTCTGTCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTT-TTTCCATCTGGGTTTACTAGCATTGTGTTGATTTGAGGTGAAAAACAGATAAAGATTCAATCTTTACAGTTTTTAAGTGATTTTCCCATCTGGGTCTGTTTCAAGAATCTCAACAATGGCACCTTCTTTTACCTGGTGGGGTAAAGAAACCCATAGGGGTACACCAGTAGTAGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTCAGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCAGGTTGTTTAACTTCTATAGCATCAGCATTATTCAGCTTAGCCTCCGTCGTACGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="35740" stop="36792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36040" g_stop="36486" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36040" e_stop="36486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAATACACACAAAAAAATAGTTTAATCTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTCATGTATGAAAAAAATTAAAATATACCTTGAATTTTGATAGAAGAATCATATATACCCCTAAATAATTCCTTT-TTTAAAAATTAGAAGTAATAAACATAAATTTAAAACTACTTTTTTAACTTCCGTTAAAGGAAGGGTATATGTGAGCCATTTTGTAACAGCAGAGGTATATGTGAGCCGTTTGTATAACGATAAGCGCATATATGAGCCACTTTTATAACGAGGGGTATATCATCTCCAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAAT-ACACACA-AAAAAAATATTTGAAT-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301272" ref_strand="+" ref_description="SGN-E301272 [cLEW-24-L17]">
      <seq>atcaacaatctcgggacccttgttgtctacatgatcatcatcggagatgttttgtctgggacttcatcagatggggtgcattattcgggtgtcacggaagaatggtttggccaacattggtggaattcgcgctccaacttactgcttcttacaacgctccttgtttttgctcctcttatttcattcaagcgtgttgattcattgagatacacatcagctttgtcagtcgctttggctgttgtatttgtggtgatcactgctggaatagtcattgttaaggtcattaatggaagcattgggatgccccgcttactgcctaaacttattgatcaagcgtctttctggaagcttttcacaactgttccagtacttgttactgcctatatttgccatcacaatagtaagttctagctgttcattacttacacagtattgtgtcaaagaatatcgttagtaacaaccccctctgtgattaagcagatagataatgcaattttcctttttaatgtgatcttaatacccaaatcaagctgaggacgtttcctcaaaggctttttggtatacatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="45847" stop="42334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45547" g_stop="45505" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45504" i_stop="45267" i_length="238">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45266" g_stop="45114" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="196" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45113" i_stop="43009" i_length="2105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43008" g_stop="42634" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="571" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E301272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45547" e_stop="45505"/>
          <exon e_start="45266" e_stop="45114"/>
          <exon e_start="43008" e_stop="42634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCGGTACTCTCTCTGGTTTCTTTTTGATCACTTTTTAATGTGTTTTTTTAAAAAATACATTTTATCTTTTAGTCGACTCTTTAATCTCTTCAATTTCAACTTTGCGTGACATGTTTAAGATCACGAGATTAAATGACATTTTGGTTCCCAGAGTGTTATCTCCATTTTGTGACCAGTTGCTAAATGTAGTAGCTCTGGAGTTATCTGTGTAGGCTAATGAAAGTGGTCTGTTTGATTGCAGGAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTGGTGAGCATTCGTACTAACTCATCTCTTCTTCCCAATGTTTCATAGTGTTATTCTCGTTTTATATCCTTACTATGAACTGTGACACGGATACTTGAAAAAAAAAAGGAAAGTAGTTTGATGTGCTGAACTTGCAAAGATGGAAATGAACTGTATCTGTAGTCACAAATATGGAATCTTTCTCTGCATTTGATGATTGTTATCTTCGAAATGTTTACATTTTATAGCTAATACCAAGTTAAACTGTTACCCTTGGAATTTCTGGAGTTCTCTATAATGCTGATATAACATAGCTAATCCCACTGTGAATCAACATGACACTACTAATTTACTCTTCATGCTAGTACTATCCCTGTTTCTCCCCACTTTCTTTCCCAAACAAACTTGTTCCGCATCCCAAAGTTTCCATGTATGTTTACGTTCCATTTATACATATGTCAAGTAAAACGGATTTGTGTATCTGGATTGGTATTTATTGGGTATTACTCGTAATGGTGTTTCCTCTTGAAAATATTTATAGCACACATTTGATACTGAATACCAATGAGACACCTTTAGCAATCAAAATGAAATTGGTTATAGAGTATCAGGTGTTATTTTATGCGTGTCCAACACATTCTAATGATACCACACTCTCCATTTAAAAAGTTGTTTGTCCATCTACAATATGACTAGATTATAAAATGAAATATTTGCTTAGCATTTGTTGGATCAATTTATTTATTTTTGAATGGTAAGAGAGTAGAAGAGGATGAACTTGTGAAGCGTAAATTGAGGCTCTTAAAACTTTCATAGTATTTAAAATTACAAATGCCTTCGGCGTAAGGTTAGTAGACAACAATTAGAAATAACCCTAATCTTACCTCATCAAAAAGTATAAGAAAAAAGAAACAACCCAAACTGTAAAAACAGGACAAGCATTTTAAGACAAAGAGAGTTCTGCTTAGGTTTTAATAATCATTTAACATAAATGAGCTGATCCTTACTGTATAAGAATTTGAACTGAGATACTTGCTGCTTTTCATTAGCGGCTCTTCTATCAGTCTATGACTACTTCCTGAAATTAAGGAAAGAAGTACAATTTATAGTACTAGAGTCAGATAAATTCAAAATAAGACGCGAAAACACCCGATCCCATTCCGACCGATGGTATCCAGGAAAATGTCATGTCAAAGGATCTGCAATATGAAGTAGCAATACTTTGAAGTTACGAAGATATGATAACGGACTGACTTTTTATTTAGATCCAAATTTTGTTGTAAATTCTGACAGAATAGAGGAGTTTTATTTTCTCCTGATAGAATTATGGTTATAAGTTAACAAAAAGTAGTGGGTCACATGGAATGGAAGTAGGGAGTAAGTTTCTATATCATGAATTTTGACAAATTAATTACAAATAGGTTCTCCTTTTTGATAAAGGCATTTCTCCTCTTTTTTTCATTCATGAAAAGATGTGTTAACGGATAAACTCTAATATGAGTTGAAGGATTTAGTTCCAATCTGTGAGTGTATTGGTTGTGAAATTCATCTTTAAGTTGATTATGGATGTGTGTATTACCTAAATGTGACTTCATGAGAATCAACAAATATGTTGTGGTAAAAATGATTTTAAGGGATATTTAGGGTGAGATATTACCTCATAGTGGAACATGCCAATTATGTATATGAGGTTAAGGGCTGTTGATGTGATGTGGTGGTTAACCGAATTATGACAATATGAAGTAGAAGGGCATCTTGTGTTTGGTTACACTTTAGCCAAGTTAGAACCATTTAAAGTACAATAATTTTGTGAAATTTTCAATGTACAATCTCTTCCACTATGCCCAGGTTCATAAGGTTATTAACTTATTATTGCATAATCACGCAGTCTAAATTCTTATGATGTGACATCACCTTAAATGAAGGAGGTGGTTCTCCTTGTCTATGGGATGAAACTCGGATTGTATTGCATGTAGTGTACAGTTTCTTATCGAAATCAGCCAGCAATACGATATTATTACACCTTCATTATATTTGTTTTCCTACTTTTCAGATGGTATACTTGCCTGTGAAGGCACTATCTGCAGTCAGTCACTAATATGGATTACTTTTTTTATTGTATTGGGCAGATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCTGTTGTATTTGTGGTGATCACTGCTGGAATAGTCATTGTTAAGGTCATTAATGGAAGCATTGGGATGCCCCGCTTACTGCCTAAACTTATTGATCAAGCGTCTTTCTGGAAGCTTTTCACAACTGTTCCAGTACTTGTTACTGCCTATATTTGCCATCACAATAGTAAGTTCTAGCTGTTCATTACTTACACAGTATTGTGTCAAAGAATATCGTTAGTAACAACCCCCTCTGTGATTAAGCAGATAGATAATGCAATTTTCCTTTTTAATGTGATCTTAATACCCAAATCAAGCTGAGGACGTTTCCTCAAAGGCTTTTTGGTATACATGCTTT</genome_strand>
        <mrna_strand>ATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCG..............................................................................................................................................................................................................................................GAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCTGTTGTATTTGTGGTGATCACTGCTGGAATAGTCATTGTTAAGGTCATTAATGGAAGCATTGGGATGCCCCGCTTACTGCCTAAACTTATTGATCAAGCGTCTTTCTGGAAGCTTTTCACAACTGTTCCAGTACTTGTTACTGCCTATATTTGCCATCACAATAGTAAGTTCTAGCTGTTCATTACTTACACAGTATTGTGTCAAAGAATATCGTTAGTAACAACCCCCTCTGTGATTAAGCAGATAGATAATGCAATTTTCCTTTTTAATGTGATCTTAATACCCAAATCAAGCTGAGGACGTTTCCTCAAAGGCTTTTTGGTATACATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303021" ref_strand="+" ref_description="SGN-E303021 [cLEW-26-I2]">
      <seq>tttcccccaaatttaccagaatgacttactccgaccggaaacaccgtcggagctataaaaccgcccctcttctgcctcaaaaggatgatgctttcagtcactccgaggccggattcgatggagcttccttttccggagccgtcttcaacctgtcaactacaattgtcggcgccggaatcatggctcttccggctacgctcaagcaacttggtgcaattccaggtcttatcgttatcatacttgctgctatactgacagaaaagtcgattgagatgttactgaggttcaccagagcttccaaatgctcctcctactctggcctcgctggcgatgcgttcggtggctttggtcgtacattgctgcaagcttgtgtcgtgatcaacaatctcgggacccttgttgtctacatgatcatcatcggagatgttttgtctgggacttcatcagatggggtgcattattcgggtgtcacggaagaatggtttggccaacattggtggaattcgcgctccaacttactgcttcttacaacgctccttgtttttgctcctcttatttcattcaagcgtgttgattcattgagatacacatcagctttgtcagtcgctttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="46224" stop="42668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45924" g_stop="45505" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45504" i_stop="45267" i_length="238">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45266" g_stop="45114" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="573" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45113" i_stop="43009" i_length="2105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43008" g_stop="42968" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="614" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E303021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45924" e_stop="45505"/>
          <exon e_start="45266" e_stop="45114"/>
          <exon e_start="43008" e_stop="42968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCCAAATTTACCAGAATGACTTACTCCGACCGGAAACACCGTCGGAGCTATAAAACCGCCCCTCTTCTGCCTCAAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCGGTACTCTCTCTGGTTTCTTTTTGATCACTTTTTAATGTGTTTTTTTAAAAAATACATTTTATCTTTTAGTCGACTCTTTAATCTCTTCAATTTCAACTTTGCGTGACATGTTTAAGATCACGAGATTAAATGACATTTTGGTTCCCAGAGTGTTATCTCCATTTTGTGACCAGTTGCTAAATGTAGTAGCTCTGGAGTTATCTGTGTAGGCTAATGAAAGTGGTCTGTTTGATTGCAGGAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTGGTGAGCATTCGTACTAACTCATCTCTTCTTCCCAATGTTTCATAGTGTTATTCTCGTTTTATATCCTTACTATGAACTGTGACACGGATACTTGAAAAAAAAAAGGAAAGTAGTTTGATGTGCTGAACTTGCAAAGATGGAAATGAACTGTATCTGTAGTCACAAATATGGAATCTTTCTCTGCATTTGATGATTGTTATCTTCGAAATGTTTACATTTTATAGCTAATACCAAGTTAAACTGTTACCCTTGGAATTTCTGGAGTTCTCTATAATGCTGATATAACATAGCTAATCCCACTGTGAATCAACATGACACTACTAATTTACTCTTCATGCTAGTACTATCCCTGTTTCTCCCCACTTTCTTTCCCAAACAAACTTGTTCCGCATCCCAAAGTTTCCATGTATGTTTACGTTCCATTTATACATATGTCAAGTAAAACGGATTTGTGTATCTGGATTGGTATTTATTGGGTATTACTCGTAATGGTGTTTCCTCTTGAAAATATTTATAGCACACATTTGATACTGAATACCAATGAGACACCTTTAGCAATCAAAATGAAATTGGTTATAGAGTATCAGGTGTTATTTTATGCGTGTCCAACACATTCTAATGATACCACACTCTCCATTTAAAAAGTTGTTTGTCCATCTACAATATGACTAGATTATAAAATGAAATATTTGCTTAGCATTTGTTGGATCAATTTATTTATTTTTGAATGGTAAGAGAGTAGAAGAGGATGAACTTGTGAAGCGTAAATTGAGGCTCTTAAAACTTTCATAGTATTTAAAATTACAAATGCCTTCGGCGTAAGGTTAGTAGACAACAATTAGAAATAACCCTAATCTTACCTCATCAAAAAGTATAAGAAAAAAGAAACAACCCAAACTGTAAAAACAGGACAAGCATTTTAAGACAAAGAGAGTTCTGCTTAGGTTTTAATAATCATTTAACATAAATGAGCTGATCCTTACTGTATAAGAATTTGAACTGAGATACTTGCTGCTTTTCATTAGCGGCTCTTCTATCAGTCTATGACTACTTCCTGAAATTAAGGAAAGAAGTACAATTTATAGTACTAGAGTCAGATAAATTCAAAATAAGACGCGAAAACACCCGATCCCATTCCGACCGATGGTATCCAGGAAAATGTCATGTCAAAGGATCTGCAATATGAAGTAGCAATACTTTGAAGTTACGAAGATATGATAACGGACTGACTTTTTATTTAGATCCAAATTTTGTTGTAAATTCTGACAGAATAGAGGAGTTTTATTTTCTCCTGATAGAATTATGGTTATAAGTTAACAAAAAGTAGTGGGTCACATGGAATGGAAGTAGGGAGTAAGTTTCTATATCATGAATTTTGACAAATTAATTACAAATAGGTTCTCCTTTTTGATAAAGGCATTTCTCCTCTTTTTTTCATTCATGAAAAGATGTGTTAACGGATAAACTCTAATATGAGTTGAAGGATTTAGTTCCAATCTGTGAGTGTATTGGTTGTGAAATTCATCTTTAAGTTGATTATGGATGTGTGTATTACCTAAATGTGACTTCATGAGAATCAACAAATATGTTGTGGTAAAAATGATTTTAAGGGATATTTAGGGTGAGATATTACCTCATAGTGGAACATGCCAATTATGTATATGAGGTTAAGGGCTGTTGATGTGATGTGGTGGTTAACCGAATTATGACAATATGAAGTAGAAGGGCATCTTGTGTTTGGTTACACTTTAGCCAAGTTAGAACCATTTAAAGTACAATAATTTTGTGAAATTTTCAATGTACAATCTCTTCCACTATGCCCAGGTTCATAAGGTTATTAACTTATTATTGCATAATCACGCAGTCTAAATTCTTATGATGTGACATCACCTTAAATGAAGGAGGTGGTTCTCCTTGTCTATGGGATGAAACTCGGATTGTATTGCATGTAGTGTACAGTTTCTTATCGAAATCAGCCAGCAATACGATATTATTACACCTTCATTATATTTGTTTTCCTACTTTTCAGATGGTATACTTGCCTGTGAAGGCACTATCTGCAGTCAGTCACTAATATGGATTACTTTTTTTATTGTATTGGGCAGATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCT</genome_strand>
        <mrna_strand>TTTCCCCCAAATTTACCAGAATGACTTACTCCGACCGGAAACACCGTCGGAGCTATAAAACCGCCCCTCTTCTGCCTCAAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCG..............................................................................................................................................................................................................................................GAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209977" ref_strand="+" ref_description="SGN-E209977 [cLEC-40-A10]">
      <seq>aaaaggatgatgctttcattcactccgaggccggattcgatggagcttcctttttcggagccgtcttcaacctgtcaactacaattgtcggcgccggaatcatggctcttccggctacgctcaagcaacttggtgcaattccaggtcttatcgttatcatacttgctgctatactgacagaaaagtcgattgagatgttactgaggttcaccagagcttccaaatgctcctcctactctggcctcgctggcgatgcgttcggtggctttggtcgtacattgctgcaagcttgtgtcgtgatcaacaatctcgggacccttgttgtctacatgatcatcatcggagatgttttgtctgggacttcatcaaatggggtgcattattcgggtgtcacggaagaatggtttggccaacattggtggaattcgcgctccaacttactgcttcttacaacgctccttgtttttgctcctcttatttcattcaagcgtgttgattcattgagatacacatcagctttgtcagtcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="46146" stop="42673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45846" g_stop="45505" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45504" i_stop="45267" i_length="238">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45266" g_stop="45114" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="495" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45113" i_stop="43009" i_length="2105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43008" g_stop="42973" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="531" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E209977" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45846" e_stop="45505"/>
          <exon e_start="45266" e_stop="45114"/>
          <exon e_start="43008" e_stop="42973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCGGTACTCTCTCTGGTTTCTTTTTGATCACTTTTTAATGTGTTTTTTTAAAAAATACATTTTATCTTTTAGTCGACTCTTTAATCTCTTCAATTTCAACTTTGCGTGACATGTTTAAGATCACGAGATTAAATGACATTTTGGTTCCCAGAGTGTTATCTCCATTTTGTGACCAGTTGCTAAATGTAGTAGCTCTGGAGTTATCTGTGTAGGCTAATGAAAGTGGTCTGTTTGATTGCAGGAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTGGTGAGCATTCGTACTAACTCATCTCTTCTTCCCAATGTTTCATAGTGTTATTCTCGTTTTATATCCTTACTATGAACTGTGACACGGATACTTGAAAAAAAAAAGGAAAGTAGTTTGATGTGCTGAACTTGCAAAGATGGAAATGAACTGTATCTGTAGTCACAAATATGGAATCTTTCTCTGCATTTGATGATTGTTATCTTCGAAATGTTTACATTTTATAGCTAATACCAAGTTAAACTGTTACCCTTGGAATTTCTGGAGTTCTCTATAATGCTGATATAACATAGCTAATCCCACTGTGAATCAACATGACACTACTAATTTACTCTTCATGCTAGTACTATCCCTGTTTCTCCCCACTTTCTTTCCCAAACAAACTTGTTCCGCATCCCAAAGTTTCCATGTATGTTTACGTTCCATTTATACATATGTCAAGTAAAACGGATTTGTGTATCTGGATTGGTATTTATTGGGTATTACTCGTAATGGTGTTTCCTCTTGAAAATATTTATAGCACACATTTGATACTGAATACCAATGAGACACCTTTAGCAATCAAAATGAAATTGGTTATAGAGTATCAGGTGTTATTTTATGCGTGTCCAACACATTCTAATGATACCACACTCTCCATTTAAAAAGTTGTTTGTCCATCTACAATATGACTAGATTATAAAATGAAATATTTGCTTAGCATTTGTTGGATCAATTTATTTATTTTTGAATGGTAAGAGAGTAGAAGAGGATGAACTTGTGAAGCGTAAATTGAGGCTCTTAAAACTTTCATAGTATTTAAAATTACAAATGCCTTCGGCGTAAGGTTAGTAGACAACAATTAGAAATAACCCTAATCTTACCTCATCAAAAAGTATAAGAAAAAAGAAACAACCCAAACTGTAAAAACAGGACAAGCATTTTAAGACAAAGAGAGTTCTGCTTAGGTTTTAATAATCATTTAACATAAATGAGCTGATCCTTACTGTATAAGAATTTGAACTGAGATACTTGCTGCTTTTCATTAGCGGCTCTTCTATCAGTCTATGACTACTTCCTGAAATTAAGGAAAGAAGTACAATTTATAGTACTAGAGTCAGATAAATTCAAAATAAGACGCGAAAACACCCGATCCCATTCCGACCGATGGTATCCAGGAAAATGTCATGTCAAAGGATCTGCAATATGAAGTAGCAATACTTTGAAGTTACGAAGATATGATAACGGACTGACTTTTTATTTAGATCCAAATTTTGTTGTAAATTCTGACAGAATAGAGGAGTTTTATTTTCTCCTGATAGAATTATGGTTATAAGTTAACAAAAAGTAGTGGGTCACATGGAATGGAAGTAGGGAGTAAGTTTCTATATCATGAATTTTGACAAATTAATTACAAATAGGTTCTCCTTTTTGATAAAGGCATTTCTCCTCTTTTTTTCATTCATGAAAAGATGTGTTAACGGATAAACTCTAATATGAGTTGAAGGATTTAGTTCCAATCTGTGAGTGTATTGGTTGTGAAATTCATCTTTAAGTTGATTATGGATGTGTGTATTACCTAAATGTGACTTCATGAGAATCAACAAATATGTTGTGGTAAAAATGATTTTAAGGGATATTTAGGGTGAGATATTACCTCATAGTGGAACATGCCAATTATGTATATGAGGTTAAGGGCTGTTGATGTGATGTGGTGGTTAACCGAATTATGACAATATGAAGTAGAAGGGCATCTTGTGTTTGGTTACACTTTAGCCAAGTTAGAACCATTTAAAGTACAATAATTTTGTGAAATTTTCAATGTACAATCTCTTCCACTATGCCCAGGTTCATAAGGTTATTAACTTATTATTGCATAATCACGCAGTCTAAATTCTTATGATGTGACATCACCTTAAATGAAGGAGGTGGTTCTCCTTGTCTATGGGATGAAACTCGGATTGTATTGCATGTAGTGTACAGTTTCTTATCGAAATCAGCCAGCAATACGATATTATTACACCTTCATTATATTTGTTTTCCTACTTTTCAGATGGTATACTTGCCTGTGAAGGCACTATCTGCAGTCAGTCACTAATATGGATTACTTTTTTTATTGTATTGGGCAGATTCATTGAGATACACATCAGCTTTGTCAGTCGCTT</genome_strand>
        <mrna_strand>AAAAGGATGATGCTTTCATTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTTCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCG..............................................................................................................................................................................................................................................GAGATGTTTTGTCTGGGACTTCATCAAATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTGAGATACACATCAGCTTTGTCAGTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323262" ref_strand="+" ref_description="SGN-E323262 [cTOB-28-J11]">
      <seq>ttcctctttattcgccggcgatggacttcaaatgctccgatttagaacagtggaaggaggccttatcttcttacgaagccagtatagagtcacttaacaagcctaatctcgtctctctcgatgatttctaccggaatgagcttcccggcgttctccggcaacgaaaccctagttacatcacaactcccgaactctccaagctcatgcaatggaagcttacaagaggcaaatggaggcctaggttgctggattttgtatcatcactggacgatgctgctgtgagatctgcttcggagaaagcatttcagtctctacctgatatctcaagagctatttcggcactcactgtcttgaaaggcgttggtcccgctactgcctccgctgttctggctgcttatgcaccggatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="50036" stop="48546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49736" g_stop="49502" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49501" i_stop="49021" i_length="481">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49020" g_stop="48846" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="410" r_length="175" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-E323262" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49736" e_stop="49502"/>
          <exon e_start="49020" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTTTATTCGCCGGCGATGGACTTCAAATGCTCCGATTTAGAACAGTGGAAGGAGGCCTTATCTTCTTACGAAGCCAGTATAGAGTCACTTAACAAGCCTAATCTCGTCTCTCTCGATGATTTCTACCGGAATGAGCTTCCCGGCGTTCTCCGGCAACGAAACCCTAGTTACATCACAACTCCCGAACTCTCCAAGCTCATGCAATGGAAGCTTACAAGAGGCAAATGGAGGTTGCTACTTCTCTCTTCATCTAGCATTTGCCAAAATATATGTATTTACTTTTGATAATTGCTATGGTATATTGATTGAATAGTAATATTGTTATGTGTAAGTATTTCTAGTTTTATGCAACTTTTTTTTTGTAGTTAATTTGCTGTATTTTGAAGGTTTGACTACATAATATGTCACTCCTTTAAATTTGTTTGTCTGGTTTTCAAAGTATACTTTTTGAATCTGTGGTCTTATATTTAAAAATACGTTCAATGTATTTAAATACCTTATAATTCTATGATCTTAAACATGTCACGTAGAGAGTTAGAATTAAAGAGTTCTAATAAAGGAAAAAGATGGAAAGTAAGACAAGTAAGTTGAGATGGAGTGAGTATATTTAGATGTGGTACTTAAGGCAATGAGAAAATTCCACATTACCGTTTTCAAAAAAAAAAAAGGCTATGAGAAAATTCCAAGTATCATATGATAATTGTCATTCAGGCCTAGGTTGTTGGATTTTGTATCATCACTGGACGATGCTGTTGTGAGATCTGCTTCGGAGAAGGCATTTCAGTCTCTACCTGATATCTCAAAAGCTATTTCGGCACTCACTGTCTTGAAAGGCGTTGGTCCAGCTACTGCCTCTGCTGTTCTGGCTGCTTATGCACCGGATACT</genome_strand>
        <mrna_strand>TTCCTCTTTATTCGCCGGCGATGGACTTCAAATGCTCCGATTTAGAACAGTGGAAGGAGGCCTTATCTTCTTACGAAGCCAGTATAGAGTCACTTAACAAGCCTAATCTCGTCTCTCTCGATGATTTCTACCGGAATGAGCTTCCCGGCGTTCTCCGGCAACGAAACCCTAGTTACATCACAACTCCCGAACTCTCCAAGCTCATGCAATGGAAGCTTACAAGAGGCAAATGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGGTTGCTGGATTTTGTATCATCACTGGACGATGCTGCTGTGAGATCTGCTTCGGAGAAAGCATTTCAGTCTCTACCTGATATCTCAAGAGCTATTTCGGCACTCACTGTCTTGAAAGGCGTTGGTCCCGCTACTGCCTCCGCTGTTCTGGCTGCTTATGCACCGGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316482" ref_strand="+" ref_description="SGN-E316482 [cTOA-25-G21]">
      <seq>atttagtatatgtggcttgttctgtttaattcgtaaaaaagtgtgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttncaggatggaaagagtacacgtctttcttatcccctggagaatttcactctgatgtttctgggaagagcttnncacatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttncccatgtcaaactcgagcaaggcactgttacgtctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58911" stop="60977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59211" g_stop="59676" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="578" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="752" r_length="174" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60677" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="787" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E316482" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59211" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTT-CCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGC</genome_strand>
        <mrna_strand>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTNCAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAG-AATTTCACTCTGATGTTTCTGGGAAGAGCTTNNCAC-ATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTNCCCA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745613" ref_strand="+" ref_description="SGN-E745613 [GI|47105257]">
      <seq>gggtaaaaaagtgtgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgtgatccaaaggtagaagtcccttcttgttttgttggtctggtcctggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattgagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58943" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59241" g_stop="59676" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="548" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="723" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="892" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1111" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1387" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1388" r_stop="1666" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1667" r_stop="1960" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1963" polyA_stop="1978"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E745613" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1960</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59241" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>GGGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTGAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327540" ref_strand="+" ref_description="SGN-E327540 [cTOC-20-I23]">
      <seq>tgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58954" stop="60706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59254" g_stop="59676" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="535" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="710" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E327540" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59254" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA</genome_strand>
        <mrna_strand>TGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315613" ref_strand="+" ref_description="SGN-E315613 [cTOA-22-F1]">
      <seq>tgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58954" stop="59989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59254" g_stop="59671" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E315613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59254" e_stop="59671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTG</genome_strand>
        <mrna_strand>TGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309496" ref_strand="+" ref_description="SGN-E309496 [cTOA-2-O20]">
      <seq>tgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58954" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59254" g_stop="59626" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E309496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59254" e_stop="59626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCA</genome_strand>
        <mrna_strand>TGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317962" ref_strand="+" ref_description="SGN-E317962 [cTOA-30-M10]">
      <seq>gaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcatcactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttctaggatggaaagagtacacgtctttcttatcccctggagaatttcactctgatgtttctggaaagagcttccaccatgggcgtttcattcagagaatgcgagagaaagctgcagctcttcccatgtcaaactcgagcaggcactgttacgtctctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58967" stop="60980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59267" g_stop="59676" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="522" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="695" r_length="173" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60680" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="732" r_length="37" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E317962" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59267" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTG</genome_strand>
        <mrna_strand>GAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCATCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCTAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAG-AATTTCACTCTGATGTTTCTGGAAAGAGCTTCCACCATGGGCGTTTCATTCAGAGAATGCGAGAGAAAGCTGCAGCTCTTCCC-A............................................................................................................................................................................................................................................TGTCAAACTCGAGC-AGGCACTGTTACGTCTCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317996" ref_strand="+" ref_description="SGN-E317996 [cTOA-30-N11]">
      <seq>gaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcatcactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaattcactctgatggttctggaaggagcttccacatgggcgtttcattcaagaatgcgagagaaagctgcagctctttccaatgtcaaactcgagcagggcactgttacgtctctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58967" stop="60979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59267" g_stop="59676" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="522" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="694" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60679" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="731" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E317996" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59267" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTT</genome_strand>
        <mrna_strand>GAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCATCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAA-TTCACTCTGATGGTTCTGGAAGGAGCTTCCAC-ATGGGCGTTTCATTC-AAGAATGCGAGAGAAAGCTGCAGCTCTTTCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAGGGCACTGTTACGTCTCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366696" ref_strand="+" ref_description="SGN-E366696 [cLPT-17-M19]">
      <seq>gaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatatagagagattcacgggcattgttagagaagcacgtcgtcgtttctcttgctccgtttccgtttcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctctccggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggccgcagcaaaagtaaaactgatggctcggcaactagcaccactacaactacgctgtataacggagagtccatatcaaaggatggaaccgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58967" stop="59966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59267" g_stop="59666" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E366696" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59267" e_stop="59666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAG--ATATATAGA--GATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACAC</genome_strand>
        <mrna_strand>GAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATATAGAGAGATTCACGGGCATTGTTAGAGAAGC-ACGTCGTCGTTTCTCTTGCTCCGTTTCCGTTTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTCCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGCCGCAGCAAAAGTAAAACTGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAACGGAGAGTCCATATCAAAGGATGGAACCGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730988" ref_strand="+" ref_description="SGN-E730988 [LA25DC07]">
      <seq>ccgtttccagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctacgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggccgcagcaaaagtaaaactgatggctcggcaactagcaccactacaactacgctgtgtaatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtgggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagctgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtctgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagacctttccctctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58960" stop="61024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59268" g_stop="59676" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="423" r_length="413" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="535" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="710" r_length="175" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60724" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="792" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E730988" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59268" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAG--ATATATA--GAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCC</genome_strand>
        <mrna_strand>AAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTACGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGCCGCAGCAAAAGTAAAACTGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTGTAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTGGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGCTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTCTGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGACCTTTCCCTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337916" ref_strand="+" ref_description="SGN-E337916 [cTOE-14-D18]">
      <seq>acagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58984" stop="60388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59284" g_stop="59676" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60088" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="486" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E337916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59284" e_stop="59676"/>
          <exon e_start="59996" e_stop="60088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTG</genome_strand>
        <mrna_strand>ACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330647" ref_strand="+" ref_description="SGN-E330647 [cTOD-8-L18]">
      <seq>aaatctttcatcatatacagcctaataatactactggttgggttttcatttttagatatataaacattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcacatttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccacatcaaaggatggaaacgaagacgttgatatcatcatcctcggtgccggtgctgccggtgctgctcttgctcacactcttggcaaggaggggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58989" stop="59979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59289" g_stop="59671" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E330647" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59289" e_stop="59671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTG</genome_strand>
        <mrna_strand>AAATCTTTCATCATATACAGCCTAATAATACTACTGGTTGGGTTTTCATTTTTAGATATATAAACATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCACATTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCACATCAAAGGATGGAAACGAAGACGTTGATATCATCATCCTCGGTGCCGGTGCTGCCGGTGCTGCTCTTGCTCACACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336248" ref_strand="+" ref_description="SGN-E336248 [cTOE-10-D10]">
      <seq>catcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58997" stop="59979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59297" g_stop="59671" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E336248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59297" e_stop="59671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTG</genome_strand>
        <mrna_strand>CATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484196" ref_strand="+" ref_description="SGN-E484196 [cSTE-12-O4]">
      <seq>atcaaatacagcctaataataatactctttctattttcatttttagatatatagagagattcacgggcattgttagagaagcaacgacgtcgtttctcttgctccgtccccgtttcccgtcctttttcttcattgtcgccggcgacaatggtggatttgggtctctccggatctcttcttgcagtggtgttggggttcgttgcagttttctgttttttcattcagaaaaatggttgctgcagcaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaagtcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaggatggaaagagtacacgtctttcttatcccctggagaagttcactccgatgtttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58998" stop="60643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59298" g_stop="59676" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="505" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60343" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="615" r_length="110" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E484196" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59298" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATAT--AGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCA-T--------TGG-T-C-GTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGG</genome_strand>
        <mrna_strand>ATCAAATACAGCCTAATAATAATACTCTTTCTATTTTCATTTTTAGATATATAGAGAGATTCACGGGCATTGTTAGAGAAGCAACGACGTCGTTTCTCTTGCTCCGTCCCCGTTTCCCGTCCTTTTTCTTCATTGTCGCCGGCGACAATGGTGGATTTGGGTCTCTCCGGATCTCTTCTTGCAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTCAGAAAAATGGTTGCTGCAGCAAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAAGTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTC-AGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAG-AAGTTCACTCCGATGTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485265" ref_strand="+" ref_description="SGN-E485265 [cSTE-17-C22]">
      <seq>atcaaatacagcctaataataatactctttctattttcatttttagatatatagagagattcacgggcattgttagagaagcaacgacgtcgtttctcttgctccgtccccgtttcccgtcctttttcttcattgtcgccggcgacaatggtggatttgggtctctccggatctcttcttgcagtggtgttggggttcgttgcagttttctgttttttcattcagaaaaatggttgctgcagcaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaagtcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagttcactccgatgtttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58998" stop="60643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59298" g_stop="59676" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="505" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60343" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="616" r_length="111" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E485265" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59298" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATAT--AGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCA-T--------TGG-T-C-GTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGG</genome_strand>
        <mrna_strand>ATCAAATACAGCCTAATAATAATACTCTTTCTATTTTCATTTTTAGATATATAGAGAGATTCACGGGCATTGTTAGAGAAGCAACGACGTCGTTTCTCTTGCTCCGTCCCCGTTTCCCGTCCTTTTTCTTCATTGTCGCCGGCGACAATGGTGGATTTGGGTCTCTCCGGATCTCTTCTTGCAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTCAGAAAAATGGTTGCTGCAGCAAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAAGTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAG-AAGTTCACTCCGATGTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419510" ref_strand="+" ref_description="SGN-E419510 [STM-29-B10]">
      <seq>cagcctaataataatactctttctattttcatttttagatatatagagagattcacgggcattgttagagaagcaacgacgtcgtttctcttgctccgtccccgtttcccgtcctttttcttcattgtcgccggcgacaatggtggatttgggtctctccggatctcttcttgcagtggtgttggggttcgttgcagttttctgttttttcattcagaaaaatggttgctgcagcaaaagtaaaattgatgattcagcaactagcaccactacaactacggtgtacagtggaaagtcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctctttccaatgtcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59006" stop="60708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59306" g_stop="59676" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="497" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="672" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60651" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="681" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E419510" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59306" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATAT--AGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCA-T--------TGG-T-C-GTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACT</genome_strand>
        <mrna_strand>CAGCCTAATAATAATACTCTTTCTATTTTCATTTTTAGATATATAGAGAGATTCACGGGCATTGTTAGAGAAGCAACGACGTCGTTTCTCTTGCTCCGTCCCCGTTTCCCGTCCTTTTTCTTCATTGTCGCCGGCGACAATGGTGGATTTGGGTCTCTCCGGATCTCTTCTTGCAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTCAGAAAAATGGTTGCTGCAGCAAAAGTAAAATTGATGATTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAAGTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTTCCAA............................................................................................................................................................................................................................................TGTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340292" ref_strand="+" ref_description="SGN-E340292 [cTOF-2-I15]">
      <seq>cattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59063" stop="60680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59363" g_stop="59676" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="426" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60380" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="575" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E340292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59363" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATG</genome_strand>
        <mrna_strand>CATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330700" ref_strand="+" ref_description="SGN-E330700 [cTOD-8-C14]">
      <seq>ttgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagttcagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggtcaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59065" stop="60356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59365" g_stop="59676" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60056" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="373" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E330700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59365" e_stop="59676"/>
          <exon e_start="59996" e_stop="60056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAG</genome_strand>
        <mrna_strand>TTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTTCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGTCAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456248" ref_strand="+" ref_description="SGN-E456248 [cSTS-28-P22]">
      <seq>gaagcaacgacgtcgtttctcttgctccgtccccgtttcccgtcctttttcttcattgtcgccggcgacaatggtggatttgggtctctccggatctcttcttgcagtggtgttggggttcgttgcagttttctgttttttcattcagagaaatggtggctgcagcaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaactcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaagaagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagcccttcccaatgtcaaactagagcaaggcactgttacgtctctgcttgaagaaaacgggatcattagaggtgttcagtacaagactaaatctggtgaagagttgaaagcgtatgcacctttaactgtagtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59073" stop="61067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59373" g_stop="59676" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="428" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="603" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60767" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="728" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E456248" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59373" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATT--G-G---TCG----T--AACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTG</genome_strand>
        <mrna_strand>GAAGCAACGACGTCGTTTCTCTTGCTCCGTCCCCGTTTCCCGTCCTTTTTCTTCATTGTCGCCGGCGACAATGGTGGATTTGGGTCTCTCCGGATCTCTTCTTGCAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTCAGAGAAATGGTGGCTGCAGCAAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAACTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGAAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCCCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTAGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAACGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCTGGTGAAGAGTTGAAAGCGTATGCACCTTTAACTGTAGTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437125" ref_strand="+" ref_description="SGN-E437125 [cSTA-2-F2]">
      <seq>aagcaacgacgtcgtttctcttgctccgtccccgtttcccgtcctttttcttcattgtcgccggcgacaatggtggatttgggtctctccggatctcttcttgcagtggtgttggggttcgttgcagttttctgttttttcattcagaaaaatggttgctgcaccaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaagtcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgcgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59074" stop="60680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59374" g_stop="59676" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.858"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="427" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60380" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="576" r_length="149" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E437125" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59374" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCA-T--------TGG-T-C-GTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATG</genome_strand>
        <mrna_strand>AAGCAACGACGTCGTTTCTCTTGCTCCGTCCCCGTTTCCCGTCCTTTTTCTTCATTGTCGCCGGCGACAATGGTGGATTTGGGTCTCTCCGGATCTCTTCTTGCAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTCAGAAAAATGGTTGCTGCACCAAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAAGTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGCGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366202" ref_strand="+" ref_description="SGN-E366202 [cLPT-1-K15]">
      <seq>aagcacgtcgtcgtttctcttgctccgtttccgtttcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctctccggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggccgcagcaaaagtaaaactgatggctcggcaactagcaccactacaactacgctgtataacggagagtccagatcaaaggatggaaccgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59074" stop="60650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59374" g_stop="59676" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="414" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60350" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="533" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E366202" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59374" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGC</genome_strand>
        <mrna_strand>AAGCA-CGTCGTCGTTTCTCTTGCTCCGTTTCCGTTTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTCCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGCCGCAGCAAAAGTAAAACTGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAACGGAGAGTCCAGATCAAAGGATGGAACCGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729017" ref_strand="+" ref_description="SGN-E729017 [LA19CH02]">
      <seq>tcttgctacgttcccgtctcccgtncctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggccgcagcaaaagtaaaactgatggctcggcaactagcaccactacaactacgctgtgtaatggatagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtgggtgccggtgccgccggtgctgctcttgctcacactcttggcaaggaggggcgtcttgtaacagtactcgaaacatatttgacggagcctgatcgaattgttggagaactcctacaacccgctggttatctcaaattgcaagagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59092" stop="60396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59392" g_stop="59676" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60096" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="387" r_length="101" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E729017" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59392" e_stop="59676"/>
          <exon e_start="59996" e_stop="60096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCTCCGTTCCCGTCTCCCGT-CCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTT</genome_strand>
        <mrna_strand>TCTTGCTACGTTCCCGTCTCCCGTNCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGCCGCAGCAAAAGTAAAACTGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTGTAATGGATAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTGGGTGCCGGTGCCGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCTTGTAACAGTACTCGAAACATATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCCGCTGGTTATCTCAAATTGCAAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479266" ref_strand="+" ref_description="SGN-E479266 [cSTD-9-E14]">
      <seq>cgagtggtttcccgtcctttttcttcatttgtcgccggcgacaatggtggatttgggtctctccggatctcttcttgcagtggtgttggggttcgttgcagttttctgttttttcattcagagaaatggtggctgcagcaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaactcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaagaagcttcccaatgggcgtttcattcaaagaatgcgagagaaagctgcagcccttcccaatgtcaaactagagcaaggcactgttacgtctctgcttgaagaaaacgggatcattagaggtgttcagtacaagactaaatctggtgaagagttgaaagcgtatgcacctttaactgtagtatgtgatgggttgtttctcgaatctacgacgtaccctttgcgaccccaaggtagaagtcccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59107" stop="61416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59400" g_stop="59676" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.823"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="401" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="575" r_length="174" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="745" r_length="170" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.754" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61101" g_stop="61116" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="761" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E479266" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59400" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCCCGTCTCCCGTCCTTTTTCTGCA-TTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATT--G-G---TCGT-A----A-CAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGAT-GGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTT</genome_strand>
        <mrna_strand>CG-AGTGGTTTCCCGTCCTTTTTCTTCATTTGTCGCCGGCGACAATGGTGGATTTGGGTCTCTCCGGATCTCTTCTTGCAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTCAGAGAAATGGTGGCTGCAGCAAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAACTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGAAGCTTCC-CAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCCCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTAGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAACGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCTGGTGAAGAGTTGAAAGCGTATGCACCTTTAACTGTAGTATGTGATGGGTTGTTTCTCGAATCTACGACGTACCCTTTGCGACCCCAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692161" ref_strand="+" ref_description="SGN-E692161 [LH_Ea07P23]">
      <seq>cctgtttcctttttctgcattgtcaccggcgacaatggtggatttatgtctctccggatctcttcttgtcatggtgttggggttcgttgcagttttctgttttttcattggccgcagcaaaagtaaaaatgatggctcggcaactagcaccgctacaactacgctgtataatggagagtccggatcaaaggatggaaacgaaaacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaagaggggcgtcattgtaaaagtaattgaaagatatttgacggagcctgatcaaattgttggacaactcctacaaccgggtggttatctcaaattgcaggagttgggattgaaagattgtgttgagaaaattgatgctcaacacgattttgggtatgcccttttcaaggatggaaagattacacatctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaacaatgcaatagagagctgcgcctcttcccaatgtcaaactcaagcaaggtactgatacgtctctgcttgaaaagaatgggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59115" stop="60996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59409" g_stop="59676" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="381" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="556" r_length="175" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60696" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="610" r_length="54" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E692161" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59409" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTC-GTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCAT</genome_strand>
        <mrna_strand>CCTGTTTCCTTTTTCTGCATTGTCACCGGCGACAATGGTGGATTTATGTCTCTCCGGATCTCTTCTTGTCATGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGCCGCAGCAAAAGTAAAAATGATGGCTCGGCAACTAGCACCGCTACAACTACGCTGTATAATGGAGAGTCCGGATCAAAGGATGGAAACGAAAACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAA...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCATTGTAAAAGTAATTGAAAGATATTTGACGGAGCCTGATCAAATTGTTGGACAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGAAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACACGATTTTGGGTATGCCCTTTTCAAGGATGGAAAGATTACACATCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAACAATGCAATAGAGAGCTGCGCCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCAAGCAAGGTACTGATACGTCTCTGCTTGAAAAGAATGGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315488" ref_strand="+" ref_description="SGN-E315488 [cTOA-22-F2]">
      <seq>tgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggaattgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59124" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59424" g_stop="59676" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="365" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60280" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="414" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E315488" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59424" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTT</genome_strand>
        <mrna_strand>TGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAATTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725815" ref_strand="+" ref_description="SGN-E725815 [LA05DC08]">
      <seq>gtagtggtgttggggttcgttgcagttttctgttttttcattggccgcagcaaaagtaaaactgatggctcggcaacttgcaccactacaactacgctgtgtaatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtgggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagaattgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcatattgcaggagttgggattggaagaatgtgttgagaaaattgatgctcaacgcgtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59176" stop="60568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59476" g_stop="59676" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="313" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60268" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="350" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E725815" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59476" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGG</genome_strand>
        <mrna_strand>GTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGCCGCAGCAAAAGTAAAACTGATGGCTCGGCAACTTGCACCACTACAACTACGCTGTGTAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTGGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGAATTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCATATTGCAGGAGTTGGGATTGGAAG............................................................................................................................AATGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487111" ref_strand="+" ref_description="SGN-E487111 [cSTE-24-C16]">
      <seq>gcaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaactcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaagaagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagcccttcccaatgtcaaactagagcaaggcactgttacgtctctgcttgaagaaaacgggatcattagaggtgttcagtacaagactaaatctggtgaagagttgacagcgtatgcacctttaactgtagtatgtgatggttgtttctcgaatctacgacgtaccctttgcgacccaaaggtagaagtcccttcttggtttgttggtctggtcctggagaactgccagcttnccacatgaaatcatggacatgtcattttggctgatccatcacctatcttgttctatcccataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59226" stop="61518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59525" g_stop="59676" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="264" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="439" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="608" r_length="169" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.754" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61101" g_stop="61218" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="726" r_length="118" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E487111" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59525" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTT-CCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCA</genome_strand>
        <mrna_strand>GCAAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAACTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGAAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCCCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTAGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAACGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCTGGTGAAGAGTTGACAGCGTATGCACCTTTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTACGACGTACCCTTTGCGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGGTTTGTTGGTCTGGTCCTGGAGAACTGCCAGCTTNCCACATG-AAATCATGGACATGTCATTTTGGCTGATCCATCACCTATCTTGTTCTATCCCATAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334526" ref_strand="+" ref_description="SGN-E334526 [cTOD-23-B24]">
      <seq>acaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgtgatccaaaggtagaagtcccttcttgttttgttggtctggtcctggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59225" stop="61510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59525" g_stop="59676" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="264" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="439" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="608" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61101" g_stop="61210" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="718" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E334526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59525" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCC</genome_strand>
        <mrna_strand>ACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472154" ref_strand="+" ref_description="SGN-E472154 [cSTB-27-B12]">
      <seq>gttttttcattcagagaaatggtggctgcagcaaaagtaaaattgatgactcagcaactagcaccactacaactacggtgtacagtggaaactcccgatcaaaggatggaaacgacgacgttgatatcatcatcgtcggtgccggagttgccggtgctgctcttgctcacactcttggcaaggaagggcgtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaagaagcttccacaatgggcgtttcattcaaagaatgcgagagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59217" stop="60691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59527" g_stop="59676" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="182" r_length="150" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="294" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="454" r_length="160" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E472154" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59527" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGC</genome_strand>
        <mrna_strand>AAAAGTAAAATTGATGACTCAGCAACTAGCACCACTACAACTACGGTGTACAGTGGAAACTCCCGATCAAAGGATGGAAACGACGACGTTGATATCATCATCGTCGGTGCCGGAGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAAGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGAAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307571" ref_strand="+" ref_description="SGN-E307571 [cLEY-16-C15]">
      <seq>gctcggcaactagcaccactacagcggacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59243" stop="61015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59543" g_stop="59676" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="247" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="422" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60715" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="495" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E307571" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59543" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGGCAACTAGCACCACTACAAC-TACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAG</genome_strand>
        <mrna_strand>GCTCGGCAACTAGCACCACTACAGCGGACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355831" ref_strand="+" ref_description="SGN-E355831 [cLHT-12-N14]">
      <seq>ggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaatgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggtactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59247" stop="61064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59547" g_stop="59676" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="242" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="417" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60764" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E355831" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59547" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTAT</genome_strand>
        <mrna_strand>GGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAATGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGTACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439755" ref_strand="+" ref_description="SGN-E439755 [cSTA-13-M22]">
      <seq>gtcgtgtaaaagtaattgaaagagatttgacagagcctgatcgaattgttggagaactcctacaaccgggtggttacctcaaattgcaggagttgggattggaagattgtgtggagaaaattgatgctcaacgagtgtttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaagtttcactccgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactagagcaaggcactgttacgtctctgcttgaagaaaacgggatcattagaggtgttcagtacaagactaaatctggtgaagagttgaaagcgtatgcacctttaactgtagtatgtgatggttgtttctcgaatctacgacgtaccctttgtgacccaaaggtagaagtcccctcttgttttgttggtctggtcctggagaactgccagcttccacatgaaaatcatggacatgtcattttggctgatccatcacctatcttgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59703" stop="61507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60003" g_stop="60107" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="280" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="449" r_length="169" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.754" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61101" g_stop="61207" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="556" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E439755" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60003" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTA</genome_strand>
        <mrna_strand>GTCGTGTAAAAGTAATTGAAAGAGATTTGACAGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTACCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTGGAGAAAATTGATGCTCAACGAGTGTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAGTTTCACTCCGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTAGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAACGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCTGGTGAAGAGTTGAAAGCGTATGCACCTTTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTACGACGTACCCTTTGTGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCCTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGCCAGCTTCCACATGAAAATCATGGACATGTCATTTTGGCTGATCCATCACCTATCTTGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359515" ref_strand="+" ref_description="SGN-E359515 [cLHT-31-H8]">
      <seq>gggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggtactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgcgacccaaaggtagaagtcccttcttgttttgttggtctggtactggagaactgtcagcttccacatgaaaatcacggacatgtcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59928" stop="61481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60097" g_stop="60107" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="186" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="355" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.754" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61101" g_stop="61181" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E359515" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60097" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTG</genome_strand>
        <mrna_strand>GGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGTACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGCGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTACTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707296" ref_strand="+" ref_description="SGN-E707296 [FA32CD09]">
      <seq>caaatagacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgcgacccaaaggtagaagtcccttcttgttttgttggtctggtactggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggctaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="59990" stop="62445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60289" g_stop="60406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="286" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.754" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="505" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="781" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62088" g_stop="62145" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="839" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E707296" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60289" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTT</genome_strand>
        <mrna_strand>CAAATAG-ACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGCGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTACTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCTAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703864" ref_strand="+" ref_description="SGN-E703864 [FA22CG03]">
      <seq>gaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgcgacccaaaggtagaagtcccttcttgttttgttggtctggtactggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggctaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaagagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggctaaaacctcgtccattaagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60086" stop="62615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60386" g_stop="60406" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="190" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.754" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="409" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="685" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62088" g_stop="62315" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="912" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E703864" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60386" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTG</genome_strand>
        <mrna_strand>GAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGCGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTACTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCTAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAAGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGC-TAAAACCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477128" ref_strand="+" ref_description="SGN-E477128 [cSTB-47-E18]">
      <seq>tgcagctcttcccaatgtcaaactagagcaaggcactgtgacgtctctgcttgaagaaaacgggatcattagaggtgttcagtacaagactaaatctggtgaagagttgaaagcgtatgcacctttaactgtagtatgtgatggttgtttctcgaatctacgacgtaccctttgcgacccaaaggtagaagtcccttcttgttttgttggtctggtcctggagaactgccagcttccacatgaaaatcatggacatgtcattttggctgatccatcacctatcttgttctatcccataagcagtactgaggtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggcgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattaccgcaattgataaaggaaacatcaggacaatgccaaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggagatgcattcaatatgcgccaccccttgactggtggaggaatgactgtagcattatctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60329" stop="61901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60392" g_stop="60406" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="184" r_length="169" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.754" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="403" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61421" g_stop="61598" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="581" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E477128" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60392" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTG</genome_strand>
        <mrna_strand>TGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTAGAGCAAGGCACTGTGACGTCTCTGCTTGAAGAAAACGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCTGGTGAAGAGTTGAAAGCGTATGCACCTTTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTACGACGTACCCTTTGCGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGCCAGCTTCCACATGAAAATCATGGACATGTCATTTTGGCTGATCCATCACCTATCTTGTTCTATCCCATAAGCAGTACTGAGGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGCGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTACCGCAATTGATAAAGGAAACATCAGGACAATGCCAAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGAGATGCATTCAATATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252792" ref_strand="+" ref_description="SGN-E252792 [cLEG-16-A21]">
      <seq>ctaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgtgatccaaaagtagaagtcccttcttgttttgttggtctggtcctggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtcccctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggccaaatatttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60417" stop="61602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60717" g_stop="60811" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61101" g_stop="61302" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="297" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E252792" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60717" e_stop="60811"/>
          <exon e_start="61101" e_stop="61302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAA</genome_strand>
        <mrna_strand>CTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAA.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCCCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616117" ref_strand="+" ref_description="SGN-E616117 [65923]">
      <seq>gaagagttgaaagcgtatgcacctttaactgtagtatgtgatggttgtttctcgaatctacgacgtaccctttgtgacccaaaggtagaagtcccctcttgttttgttggtctggtcctggagaactgccagcttccacatgaaaatcatggacatgtcattttggctgatccatcacctatcttgttctatcccataagcagtactgaggtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggcgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgccaaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggagatgcattcaatatgcgccaccccttgactggtggaggaatgactgtagcattatctgatattgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacgttggctggtgccttgtataaggtgttttgtgcttcacctgatcaaggctaggaaggagatgcgtgaagcatgctttgatttatttgagcctcggtggaagtattctcagatggaccagtatctttgctttcctggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60428" stop="62546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60728" g_stop="60811" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.754" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="303" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="579" r_length="276" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62088" g_stop="62246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="742" r_length="163" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E616117" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60728" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAA-GCTAGGAAGGAGATGCGTGAAGCATGCTTTGA-TTATTTGAGCCTCGGTGG-AGTATTCTCAGAAGGACCAGTATCTTTGCTTT-CTGGCTTA</genome_strand>
        <mrna_strand>GAAGAGTTGAAAGCGTATGCACCTTTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTACGACGTACCCTTTGTGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCCTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGCCAGCTTCCACATGAAAATCATGGACATGTCATTTTGGCTGATCCATCACCTATCTTGTTCTATCCCATAAGCAGTACTGAGGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGCGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCAAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGAGATGCATTCAATATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATTGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACGTTGGCTGGTGCCTTGTATAAGGTGTTTTGTGCTTCACCTGATCAAGGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTTATTTGAGCCTCGGTGGAAGTATTCTCAGATGGACCAGTATCTTTGCTTTCCTGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454296" ref_strand="+" ref_description="SGN-E454296 [cSTS-22-F18]">
      <seq>gaagagttgaaagcgtatgcacctttaactgtagtatgtgatggttgtttctcgaatctacgacgtaccctttgtgacccaaaggtagaagtcccctcttgttttgttggtctggtcctggagaactgccagcttccacatgaaaatcatggacatgtcattttggctgatccatcacctatcttgttctatcccataagcagtactgaggtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggcgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgccaaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggagatgcattcaatatgcgccaccccttgactggtggaggaatgactgtagcattatctgatattgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctncaccatcaatacnttggctggtgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60428" stop="61996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60728" g_stop="60811" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.754" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="303" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="579" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E454296" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60728" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG</genome_strand>
        <mrna_strand>GAAGAGTTGAAAGCGTATGCACCTTTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTACGACGTACCCTTTGTGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCCTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGCCAGCTTCCACATGAAAATCATGGACATGTCATTTTGGCTGATCCATCACCTATCTTGTTCTATCCCATAAGCAGTACTGAGGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGCGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCAAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGAGATGCATTCAATATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATTGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373914" ref_strand="+" ref_description="SGN-E373914 [TUS-33-A11]">
      <seq>gcgacgtaccctctgtgatccaaaggtagaagtcccttcttgttttgttggtctggtcctggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaagaccagtatctttgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60794" stop="62539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60794" g_stop="60811" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="25" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="244" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="520" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62088" g_stop="62239" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="672" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E373914" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60794" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTC</genome_strand>
        <mrna_strand>ACCCTCTGTGATCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAAGACCAGTATCTTTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298627" ref_strand="+" ref_description="SGN-E298627 [cLET-44-M11]">
      <seq>gcgacgtaccctctgtgatccaaaggtagaagtcccttcttgttttgttggtctgggcctggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60794" stop="61896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60794" g_stop="60811" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="25" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.754" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="244" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61421" g_stop="61596" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="420" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E298627" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60794" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATC</genome_strand>
        <mrna_strand>ACCCTCTGTGATCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGGCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730728" ref_strand="+" ref_description="SGN-E730728 [LA25AA08]">
      <seq>caattatcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggctaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaatgtatatggattggagcccggctaatatcgagtgcatctgcaatcatttttcctatcatcaangcagaaggggtcagacagatgttcttccctgctactgttcccgcatactacaggaagcccctctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60840" stop="62899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61139" g_stop="61319" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="457" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="736" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62454" g_stop="62599" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="882" r_length="146" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E730728" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61139" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTAC</genome_strand>
        <mrna_strand>CAATTATCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCTAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAATGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTTCCTATCATCAANGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATACTACAGGAAGCCCCTCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469587" ref_strand="+" ref_description="SGN-E469587 [cSTB-12-J13]">
      <seq>tctggttgatgtacctggtcaaaaagtgccttctatttcgaatggcgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgccgcaattgataaaggaaacatcaggacaatgccaaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggagatgcattcaatatgcgccaccccttgactggtggaggaatgactgtagcattatctgatattgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatttggagtcattttacaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="60935" stop="61991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61235" g_stop="61319" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61421" g_stop="61691" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="356" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E469587" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61235" e_stop="61319"/>
          <exon e_start="61421" e_stop="61691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGC</genome_strand>
        <mrna_strand>TCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGCGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCCGCAATTGATAAAGGAAACATCAGGACAATGCCAAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGAGATGCATTCAATATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATTGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATTTGGAGTCATTTTACACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321387" ref_strand="+" ref_description="SGN-E321387 [cTOB-23-A13]">
      <seq>agatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaaggtaaaaatcttttgaaatccttccttgcataagcaacatatttggttgctgtaagcaccacattttctactttgagaatccttagtgaagtaaaaactctatgttgactagtgagtaattaaggatctggaaccacaaaactgacattcctttgatgatttcaccagctatcaatctaccaataacaatgtaatgtaaaaaggcttggttcattacgatgttttaggactttttgaactcactcaattctcctataatttgccttctacataaaaaaaaaaagggagagcaaaagaggatgactcaattctcctgcagcactttcagacttaactagaatattattacctttatagatattgacttgttctgctcgcatatttatctgcagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61138" stop="62390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61438" g_stop="62090" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E321387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61438" e_stop="62090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCT</genome_strand>
        <mrna_strand>AGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591736" ref_strand="+" ref_description="SGN-E591736 [45455]">
      <seq>attcattgccgcaattgataaaggaaacatcaggacaatgccaaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggagatgcattcaatatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacgttggctggtgccttgtataaggtgttttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagatggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcacccaaacgtatatgggattggagcccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61144" stop="62657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61444" g_stop="61696" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62088" g_stop="62358" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="525" r_length="272" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E591736" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61444" e_stop="61696"/>
          <exon e_start="62088" e_stop="62358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATAT-GGATTGGAGCCCGGC</genome_strand>
        <mrna_strand>ATTCATTGCCGCAATTGATAAAGGAAACATCAGGACAATGCCAAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGAGATGCATTCAATATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACGTTGGCTGGTGCCTTGTATAAGGTGTTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGATGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCCAAACGTATATGGGATTGGAGCCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615022" ref_strand="+" ref_description="SGN-E615022 [64816]">
      <seq>ctcatcctactcctggtgctcttctcatgggagatgcattcaatatgcgccaccccttgactggtggaggaatgactgtagcattatctgatattgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacgttggctggtgccttgtataaggtgttttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagatggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgtttgtcacttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcacccaaacgtatatggattggagcccggctaatatcgagtgcatcggcaatcattttccctatcatcaaggcacaaggggtcaggcagatgttcttccccgcaactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgtcattgtaccagctccatcaggtatttctggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61209" stop="62921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61509" g_stop="61696" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="467" r_length="279" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62454" g_stop="62621" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="637" r_length="170" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E615022" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61509" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCA-GTA-TTCTGGTT</genome_strand>
        <mrna_strand>CTCATCCTACTCCTGGTGCTCTTCTCATGGGAGATGCATTCAATATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATTGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACGTTGGCTGGTGCCTTGTATAAGGTGTTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGATGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCACTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCCAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCGGCAATCATTTTCCCTATCATCAAGGCACAAGGGGTCAGGCAGATGTTCTTCCCCGCAACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGTCATTGTACCAGCTCCATCAGGTATTTCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555488" ref_strand="-" ref_description="SGN-E555488 [cTSC-4-D8]">
      <seq>catgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattgagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtataccttatcttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61234" stop="63063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61534" g_stop="61696" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="442" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62454" g_stop="62772" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="761" r_length="319" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E555488" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555488" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61534" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTATACCTTATCTCTTCTCTGTACA</genome_strand>
        <mrna_strand>CATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTGAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTATACCTTATCTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373913" ref_strand="+" ref_description="SGN-E373913 [TUS-33-A11](-)">
      <seq>cattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattgagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61245" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61545" g_stop="61696" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="431" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="725" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="739"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E373913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61545" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>CATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTGAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696001" ref_strand="+" ref_description="SGN-E696001 [LH_Ea07P23](-)">
      <seq>gtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaataccttggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgttcgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgagattgtaactgatataaacagaataaggctatgccattgtaccacctccgtcagtattctggttgtgagtttcaagagtttagtccaactgttgcataatttttggttgctagtcttcccttgtaataagtttccttttttagtttgttcccatgattaattacttaagtgactgcaaagtaaatataagtgtaaaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61272" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61572" g_stop="61696" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="404" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62454" g_stop="62695" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="646" r_length="242" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="717"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E696001" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61572" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTT</genome_strand>
        <mrna_strand>GTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACCTTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTCGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGATTGTAACTGATATAAACAGAATAAGGCTATGCCATTGTACCACCTCCGTCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCATAATTTTTGGTTGCTAGTCTTCCCTTGTAATAAGTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618189" ref_strand="+" ref_description="SGN-E618189 [68864]">
      <seq>gcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacgttggctggtgcctggtataaggtgttttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagatggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgtttgtcacttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcacccaaacgtatatggattggagcccggctaatatcgagtgcatcggcaatcattttccctatcatcaaggcagaaggggtcaggcagatgttcttccccgcaactgttcccgcatattacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61362" stop="62840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61662" g_stop="61696" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="314" r_length="279" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62454" g_stop="62540" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="401" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E618189" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61662" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGG</genome_strand>
        <mrna_strand>GCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACGTTGGCTGGTGCCTGGTATAAGGTGTTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGATGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCACTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCCAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCGGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGGCAGATGTTCTTCCCCGCAACTGTTCCCGCATATTACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620081" ref_strand="+" ref_description="SGN-E620081 [70778]">
      <seq>ttanatcagctaggaaggagatgcgtgaagcatgctttgaattatttagagcctcggtggagtattctcagatggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgtttgtcatttctttgctgtggctatctttggtgttggcgcttgctgcttcctttcccatcacccaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcaggcagatgttcttccccgcaactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaatagaataagcgctatgccattgtaccagctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcataatttttggttgctagtgatcccttgtaatctttttcctttttagtttgttcccatgattgattacactattaactggaaagtaaatataagttgtacaatcatacatttgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61852" stop="63061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62148" g_stop="62366" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="521" r_length="302" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E620081" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62148" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTG-ATTATTT-GAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAG-GCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCC-TTT------GTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>TTANATC-AGCTAGGAAGGAGATGCGTGAAGCATGCTTTGAATTATTTAGAGCCTCGGTGGAGTATTCTCAGATGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGG-CGCTTGCTGCTTCCTTTCCCATCACCCAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGGCAGATGTTCTTCCCCGCAACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAATAGAATAAGCGCTATGCCATTGTACCAGCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCATAATTTTTGGTTGCTAGTGATCCCTTGTAATCTTTTTCCTTTTTAGTTTGTTCCCATGATTGATTACACTATTAACTGGAAAGTAAATATAAGTTGTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554105" ref_strand="-" ref_description="SGN-E554105 [cTSC-3-D8]">
      <seq>tattctcagaaggaccagtatctttgctttctggcttaaaccatcgtccattgagtctagtttgtcatttctttcctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggaatggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttgtagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtataccttatctcttaaaaaaaaacctgcagcccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61909" stop="63063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62209" g_stop="62366" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62454" g_stop="62763" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="468" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E554105" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62209" e_stop="62366"/>
          <exon e_start="62454" e_stop="62763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTATACCTTATCTCTT</genome_strand>
        <mrna_strand>TATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCATCGTCCATTGAGTCTAGTTTGTCATTTCTTTCCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGAATGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTGTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTATACCTTATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218216" ref_strand="+" ref_description="SGN-E218216 [cLEL-23-H9](-)">
      <seq>gtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcacccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61963" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62263" g_stop="62366" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="399" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="419"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E218216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62263" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACC-GAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>GTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217860" ref_strand="+" ref_description="SGN-E217860 [cLEL-23-H9](-)">
      <seq>gtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61963" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62263" g_stop="62366" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="398" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="418"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E217860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62263" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>GTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230612" ref_strand="+" ref_description="SGN-E230612 [cLEL-35-H12](-)">
      <seq>gtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtatcccttaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61963" stop="63059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62263" g_stop="62366" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="398" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E230612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62263" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>GTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366203" ref_strand="+" ref_description="SGN-E366203 [cLPT-1-K15](-)">
      <seq>tcctttcccatccccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcacaaggggtcagacaaatgtttttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccccctccatcagtattctggttgtgagtttcaaaagtttagtccaactgttgcataatttttggttgctagtcttccctggtaatctttttccttttttagtttgttcccatgattgattaccctattaactgcaaagtaaatataagttgtaaaagtaaaccttatcttttctctggacattcatttttttttccttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="62018" stop="63092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62318" g_stop="62366" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62454" g_stop="62792" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="396" r_length="347" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="430"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E366203" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62318" e_stop="62366"/>
          <exon e_start="62454" e_stop="62792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCC--------TTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTATACCTTATCTCTTCTCTGTACATTCATTTTTTTCTCCTTTTT</genome_strand>
        <mrna_strand>TCCTTTCCCATCCCCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCACAAGGGGTCAGACAAATGTTTTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCCCCTCCATCAGTATTCTGGTTGTGAGTTTCAAAAGTTTAGTCCAACTGTTGCATAATTTTTGGTTGCTAGTCTTCCCTGGTAATCTTTTTCCTTTTTTAGTTTGTTCCCATGATTGATTACCCTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTAAACCTTATCTTTTCTCTGGACATTCATTTTTTTTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287788" ref_strand="+" ref_description="SGN-E287788 [cLES-19-M1]">
      <seq>gagtgcatctgcagtcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgtgaccgcatattacaggatgccctcctgaagtgaggttgaaactgctataaacagaataaggctatgccattgtaccaccttcatcagtattatggttgcgagttttaagagtttagtccaactgttgcacaattatgggtttctagtcttcccttgtaatctgtttcctttgttcccatgattgattacactatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="62153" stop="63023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62453" g_stop="62723" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E287788" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62453" e_stop="62723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACT</genome_strand>
        <mrna_strand>GAGTGCATCTGCAGTCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTGACCGCATATTACAGGATGCCCTCCTGAAGTGAGGTTGAAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTTCATCAGTATTATGGTTGCGAGTTTTAAGAGTTTAGTCCAACTGTTGCACAATTATGGGTTTCTAGTCTTCCCTTGTAATCTGTTTCCTTTGTTCCCATGATTGATTACACTATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418448" ref_strand="+" ref_description="SGN-E418448 [STM-27-F13]">
      <seq>gagagagagagagaacaattttcaattttttttttttgtattcatcaaatacatatccattgtgtaccggaattaccaaacctttgtaaattacggatctttaacgttgttcactactgattcaggaaattagttttttttggttacaagaacctacaatgatgtcaaggaggcctatcaacccatctcgacgtgtagcagacaatggagcttctttgttagaaggctcaattcggtcaaagacacggtctcccccatatttaacaattggacttattattgtgggtgcatttcttctcatagggtatttttatcgtgacacaggtacttttgccagtattaaaggagctatcagtagagtggaaggggattttttatgtactgtagaagttcaaaaggccattcctgttttgaagaaagcatatggtgatagcatgcataaggtgctgcatgttggtcctgatacttgctcggtagtggctaaattgttagaagaggaagataccgaaacttggggtatagaaccatatgatatagaggatgcaggtcttttctgcaagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcattctcntcttgtgatcatctcagatgcattggactacttgtctccaaagtatcttaataggactcttcccgaactggcgagagtgtcatctgatggactcgttattttcacaggttatccacgccaccataaagttaagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="75091" stop="80599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75394" g_stop="75505" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="125" r_length="109" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75506" i_stop="76404" i_length="899">
            <donor d_prob="0.597" d_score="0.92"/>
            <acceptor a_prob="0.845" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76405" g_stop="76562" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="284" r_length="159" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76702" g_stop="76741" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="324" r_length="40" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77392" g_stop="77433" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="366" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78498" g_stop="78872" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="742" r_length="376" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80270" g_stop="80299" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="772" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E418448" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75394" e_stop="75505"/>
          <exon e_start="76405" e_stop="76562"/>
          <exon e_start="76702" e_stop="76741"/>
          <exon e_start="77392" e_stop="77433"/>
          <exon e_start="78498" e_stop="78872"/>
          <exon e_start="80270" e_stop="80299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCAATTTTCTTTTTTTTGTATTCATCAAATACACATATCCATTGTGTACCAGAATTACCAATCATTTGTAAACTACGGATCTTTAACGTTGTTGACTACTGATTCAGGTACAAATGATGTTTTGCCATTGCCTATTTATTTGAAGCAAAGACCTCAAAGCTTCCCTTTTTCCCCCTTGTATCAAAATGGGTACAATTTTGTTTTCTTGCTCTTTGTGTTTGCTAATTGTAGTAAAAGATTGAATTTTTTTTTGTCTCTCCTATTAGTTTCCATTCATGGGTTAGGTTAACAAATACTAGACTGTTAAATGCTTCACCACAATCATTTTTTTTCCTCATATCAAAATGGGTTTAAATGTTGTTTTACTTGCTCCCTAATTATAGTTAAAGATTGAATTTTTGGTCTCTTTCTTGAAACCCTTTTAATTTCTATTCATGGGCGTGGTTAACAAATACTAGTATATGATTAAATGCTTCACCACAATCCTTTGTGGTTTTTAGTTTCCTCATATCAAAATGGGTTTAAATGTTGTTTTCTTACTCTTTTTGCTCCATAATTATAGTTAAAGATTGAATTTTTTTCTCTCTTTCTGGACATCCTTTTAGTTTCCATTCATGGGTGTGGTTAACAAATTCTATAACCAGAATCCTTTGTGTTTTTCCTCATATCAAAATGGGTTGAAGTGTTGTTTTCTTGCTCTTTTTGCTCCCTAATTGTAATGAAAGATTGGATTTTTTGGCTCTTTCTGGACACCCTTTTAGTGTCTGTCATGGGGTGTGGTTAACAAATATCCTTACATGTAAATCCATAGTTACTAATCATTGTTTGCTTAAAAGACTGGTCTTTTCCTAATATTGTGATAATGCCATATTTAGCAACTTCTGTGAAAAAGTCGAAGCTGGCAGATTTAAGAAATTTACCAGCTTTTGGTATCTAGTTTTGATTTTTGACGTAATAAGTTCTTGATTAATTTTTAATAATTAGAATTTGTCTTAATATTACCCAGGAAATTAG-ATTTTTTGGTTACAAGAACCTAAAATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTGGTACTTATTCCCGGATTCTGATGCTATTTGTTATTTAACTGTTATCATTCTGGATGACAGTGGATAAACTTTGGAATATTACTAGCCTCTAGTCATTTAACAGTAATTGTAACTCAATTTTTCCTTTTGGATATTCCAGGTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAGGTTTGTATCTGAATCCTTGGTATTTTATGAATTATTTTTATCTTCGGAAATATAGTGAGATGCCCCCCAAAAATGATGCAAAAAGAAAACAAAATATTTTGGCTGATTGCTCAACACTGGAGTCTGGAGCTGTCTGGTAGCCTATAATTTCTAGTTTAAAATATATACTAACAGCTACGCTCTTTAGTTGACTTGGAGGACTCCTATAGATTCTTTATTTAGAGTAAATTGTATATTGAAAAGAACGATAATACTTGTGCATGAAAGTCTTCCCTTCTCGAGGAAAGAAGATATCGGCATCCACATATGCACAAGTAAAAGATGGCTCATGTGTATTGTTTTCGATATATTTTTTATTTTTTTATCTGCAAACAAATAATGGTCTGTCTTCCCTTTAAACATTTTAGCAAAGGAAAACTGGCCCTACCTCATGTTTTGATGAATGTTTTCTAAATAAAAATCTCAAATGAATCTCTGCTCTCAGTAATGGTCATGCAGATGCAGGTGATTTAATTACACGTCGTGTTTCCTTCTTTCAACTTGAACATTTTGTTCTGCCTAAGTATTGTTCTTTACTTCATTCTTTGTGCTTCTGAGTCTTGTTCCTTACTTTAGTCTGACACTGATAGAGGGATTATCATCGGTTGTAGGTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAGGTAATTACTCGTGCATTATTCTAGAGGATTTGAGTTTTGACGTATTTATATATCAAATGCCACATGAATTATGTGATTTAATTGAAGTACTGAGACTTTTCTTTTAATTGCTTAGTGCTAATGGTTCTAACTATGGACTCATGATCACCTCATATTTGTATCAAGAACTTCAGTTTGGTCCTTAATGATAATCACTGTCACTTCTCTGCCTGGGGCTTTACTCTAACAATCATTATAATAATCTATTATAAGAAGGCTCGTGTAGTAGGAACCATCTAAAATTACTTAAAACAAATGTCTGTTGAGACATAATAAAACCATCTAACGTATCTCTCTAACAGCTCAAGCCTTTGGCAAGTTGGTCAACATGATATCTGAGCAGACTAGAGGTCCTGGGTTCAAATCTCGCAGCCATCCAAAAAGAAAAAAACGTGTTTGGTCCATGAAAACGAATAGGGCCAACAAGTGAGGGTGTGTATTGAGACATTATGAAATCAAGTCACTTAGTTGCTACAACTTAAGCTTTTAGTTTTAGATGAGATGGTCTCACACTTCAGCAATGTCTTTGGAGATGACATGCTGTATTCTTGTGTTCCACAAGGAAACCTATGTGCATTGTTATCATGCAGTCAGTCTGTATACCAACTTCAATAAACTAATATCAACCCAGAAACTTCACGTCTTTGATATCTGTTCTCTTATTGATTTGCTGAATAATTCTTTATTCTGGTGAGCATCTGGAACATCTGTAAACTTTCCCCCCATACTTTATACATCATTTACTCATAAAGGCATAGAGGAGGTAACAAGATTAGTAATTTTCATTTGTCACTCTAGGTGGGTGGAGTGACTGCATTATACCTATCAAGAATCTTGATATAGTCTATACACAGAGCTACTGACTTCCATTCTTTATATTAGAAGATACCTGAATTCTATTGCTTTTGTTTAGTTTGGGTAATACGGTATGTCAGTTTATTTGCCTTGACATTTTTGAAGATTAAGTTACTGCTATTTTTACATTAGAGTTGACTTAGGATCTACCACCTGTTTTACCTCTGCAGGGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTC-TCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAGGTAAGAAGAGTTTGTATTGGTTGTTGTGTTTGTATGATTGCCAGTCCAAAATGGAAGTTTATTTTGCATTCATTGTACTGTCCGAGCTAAGCTGCTTCCTATCCTCACTTCCTGTCAATCTGTATTTTGGTGTTTGCCCCTTTGGGTTACAGACATGAGTAGGGAGTATTTATCTCAATCCTAGATAGATGCCTTTTTACCATGTGAAACATATTTTTTTTTATCTTCAGTACTTGGTCATACTAGCACATTTTTCTCGTTGATCAACAAATCTATTTAGAAACTTGATCATTTGTTGCCTTAATTTCAATTTCCTTCCACCTGACGTATCTTATACAGTATGCTTTCAATAGGTTTCAAACCCCCCCTCTTTACTAGGTCCAAAATTGCCCTATTCAGTTTTCTCCTTTGAAGTTGGATTTAAGTTGACTGGGAGAAGTTCTTGTTATCACCATCCTTTCTGCGGCGGAGGATAAAGTACATCACCACTTCTCGTTAGTTACCTAAATATATCAAGAAAAGCTGAATATCTGTAAGATTTTATAGCAGGGACATTAAGGACAAATGTTGGATTTCACACACTAACACACACACGGAAAAGAAGAGGACATCCGTGGTTTTTTTTTTTTTTTAATAAATGGCATTAAACTGCTATCTCATATATGAACATAACAGATGCAGAAGTGAGGAGATTTTGCAATTGGGGGAAATTAGATGACCAGGGTCTATTTATAACTGAAAGAGAGAACCTGTATTTGTAGAACTTAGAAGAATTTAGCAGCAACAGCATGGCTTTTCCCTTTCCTTTTACTGGAAAGGAACAACTTCATTTCTGAATTAATGCAACAGTTGTTTGTTACTGTGAAATAGGATACTTGAGAATTCGTCTCCTTTCCTGTTTATCAGTGATAATATTTTTAAAGAATGATATGGTGATAGTTGGATCTAGTTTTGATGATACCTCACACATACATATCCATCTCCAGTACATGAATGGTTCACAATTGATTCCAAATAGATGCAATGTAGCGTACTTTCAATTCAGCTAGTGTGCTTTTATTCTTGTATAACTTTTGGTCAGTTGACCTCTATAGAGTAACATTTTGTATTTTGGTTGCGTTTGGCGAGTCTGATCACCTTGCTTTCATAGAGCTGTTAACTCCGTCAGTTTTCTCCTTTAAGATTTGACCATGTCACTAAATTACTCCATGCATGGGCTTTCTAAGGAGTTAGAAATGCCTTTAGGGTATTTTGCTACCTTCATCCTTTATACTCCATGATTGCTCAATATAAGACATTGGCTGCATTCTGCATATAAAGACAAGTTAATATGGGAAACCTTGTAATCCAGAGAATTCTTCTGGTGTTAATCTGATGTTAATATCTGATAATTGCAGGTTATCCACGCCACCATAAAGTTAAGTTTG</genome_strand>
        <mrna_strand>AATTTTCAATTTT-TTTTTTTTGTATTCATCAAAT--ACATATCCATTGTGTACCGGAATTACCAAACCTTTGTAAATTACGGATCTTTAACGTTGTTCACTACTGATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAGTTTTTTTTGGTTACAAGAACCTACAATGATGTCAAGGAGGCCTATCAACCCATCTCGACGTGTAGCAGACAATGGAGCTTCTTTGTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG...........................................................................................................................................GGTGCATTTCTTCTCATAGGGTATTTTTATCGTGACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTTTTATGTACTGTAGAAGTTCAAAAGGCCATTCCTGTTTTGAAGAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTGGCTAAATTGTTAGAAGAGGAAGATACCGAAACTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCTTTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCATTCTCNTCTTGTGATCATCTCAGATGCATTGGACTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGAGTGTCATCTGATGGACTCGTTATTTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCACGCCACCATAAAGTTAAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441700" ref_strand="+" ref_description="SGN-E441700 [cSTA-31-M15]">
      <seq>gagagagagagagaacaattttcaattttttttttttgtattcatcaaatacatatccattgtgtaccggaattaccaaacctttgtaaattacggatctttaacgttgttcactactgattcaggaaattagttttttttggttacaagaacctacaatgatgtcaaggaggcctatcaacccatctcgacgtgtagcagacaatggagcttctttgttagaaggctcaattcggtcaaagacacggtctcccccatatttaacaattggacttattattgtgggtgcatttcttctcatagggtatttttatcgtgacacaggtacttttgccagtattaaaggagctatcagtagagtggaaggggattttttatgtactgtagaagttcaaaaggccattcctgttttgaagaaagcatatggtgatagcatgcataaggtgctgcatgttggtcctgatacttgctcggtagtggctaaattgttagaagaggaagataccgaaacttggggtatagaaccatatgatatagaggatgcaggtcttttctgcaagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="75091" stop="79037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75394" g_stop="75505" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="125" r_length="109" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75506" i_stop="76404" i_length="899">
            <donor d_prob="0.597" d_score="0.92"/>
            <acceptor a_prob="0.845" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76405" g_stop="76562" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="284" r_length="159" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76702" g_stop="76741" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="324" r_length="40" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77392" g_stop="77433" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="366" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78498" g_stop="78737" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="606" r_length="240" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E441700" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75394" e_stop="75505"/>
          <exon e_start="76405" e_stop="76562"/>
          <exon e_start="76702" e_stop="76741"/>
          <exon e_start="77392" e_stop="77433"/>
          <exon e_start="78498" e_stop="78737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCAATTTTCTTTTTTTTGTATTCATCAAATACACATATCCATTGTGTACCAGAATTACCAATCATTTGTAAACTACGGATCTTTAACGTTGTTGACTACTGATTCAGGTACAAATGATGTTTTGCCATTGCCTATTTATTTGAAGCAAAGACCTCAAAGCTTCCCTTTTTCCCCCTTGTATCAAAATGGGTACAATTTTGTTTTCTTGCTCTTTGTGTTTGCTAATTGTAGTAAAAGATTGAATTTTTTTTTGTCTCTCCTATTAGTTTCCATTCATGGGTTAGGTTAACAAATACTAGACTGTTAAATGCTTCACCACAATCATTTTTTTTCCTCATATCAAAATGGGTTTAAATGTTGTTTTACTTGCTCCCTAATTATAGTTAAAGATTGAATTTTTGGTCTCTTTCTTGAAACCCTTTTAATTTCTATTCATGGGCGTGGTTAACAAATACTAGTATATGATTAAATGCTTCACCACAATCCTTTGTGGTTTTTAGTTTCCTCATATCAAAATGGGTTTAAATGTTGTTTTCTTACTCTTTTTGCTCCATAATTATAGTTAAAGATTGAATTTTTTTCTCTCTTTCTGGACATCCTTTTAGTTTCCATTCATGGGTGTGGTTAACAAATTCTATAACCAGAATCCTTTGTGTTTTTCCTCATATCAAAATGGGTTGAAGTGTTGTTTTCTTGCTCTTTTTGCTCCCTAATTGTAATGAAAGATTGGATTTTTTGGCTCTTTCTGGACACCCTTTTAGTGTCTGTCATGGGGTGTGGTTAACAAATATCCTTACATGTAAATCCATAGTTACTAATCATTGTTTGCTTAAAAGACTGGTCTTTTCCTAATATTGTGATAATGCCATATTTAGCAACTTCTGTGAAAAAGTCGAAGCTGGCAGATTTAAGAAATTTACCAGCTTTTGGTATCTAGTTTTGATTTTTGACGTAATAAGTTCTTGATTAATTTTTAATAATTAGAATTTGTCTTAATATTACCCAGGAAATTAG-ATTTTTTGGTTACAAGAACCTAAAATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTGGTACTTATTCCCGGATTCTGATGCTATTTGTTATTTAACTGTTATCATTCTGGATGACAGTGGATAAACTTTGGAATATTACTAGCCTCTAGTCATTTAACAGTAATTGTAACTCAATTTTTCCTTTTGGATATTCCAGGTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAGGTTTGTATCTGAATCCTTGGTATTTTATGAATTATTTTTATCTTCGGAAATATAGTGAGATGCCCCCCAAAAATGATGCAAAAAGAAAACAAAATATTTTGGCTGATTGCTCAACACTGGAGTCTGGAGCTGTCTGGTAGCCTATAATTTCTAGTTTAAAATATATACTAACAGCTACGCTCTTTAGTTGACTTGGAGGACTCCTATAGATTCTTTATTTAGAGTAAATTGTATATTGAAAAGAACGATAATACTTGTGCATGAAAGTCTTCCCTTCTCGAGGAAAGAAGATATCGGCATCCACATATGCACAAGTAAAAGATGGCTCATGTGTATTGTTTTCGATATATTTTTTATTTTTTTATCTGCAAACAAATAATGGTCTGTCTTCCCTTTAAACATTTTAGCAAAGGAAAACTGGCCCTACCTCATGTTTTGATGAATGTTTTCTAAATAAAAATCTCAAATGAATCTCTGCTCTCAGTAATGGTCATGCAGATGCAGGTGATTTAATTACACGTCGTGTTTCCTTCTTTCAACTTGAACATTTTGTTCTGCCTAAGTATTGTTCTTTACTTCATTCTTTGTGCTTCTGAGTCTTGTTCCTTACTTTAGTCTGACACTGATAGAGGGATTATCATCGGTTGTAGGTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAGGTAATTACTCGTGCATTATTCTAGAGGATTTGAGTTTTGACGTATTTATATATCAAATGCCACATGAATTATGTGATTTAATTGAAGTACTGAGACTTTTCTTTTAATTGCTTAGTGCTAATGGTTCTAACTATGGACTCATGATCACCTCATATTTGTATCAAGAACTTCAGTTTGGTCCTTAATGATAATCACTGTCACTTCTCTGCCTGGGGCTTTACTCTAACAATCATTATAATAATCTATTATAAGAAGGCTCGTGTAGTAGGAACCATCTAAAATTACTTAAAACAAATGTCTGTTGAGACATAATAAAACCATCTAACGTATCTCTCTAACAGCTCAAGCCTTTGGCAAGTTGGTCAACATGATATCTGAGCAGACTAGAGGTCCTGGGTTCAAATCTCGCAGCCATCCAAAAAGAAAAAAACGTGTTTGGTCCATGAAAACGAATAGGGCCAACAAGTGAGGGTGTGTATTGAGACATTATGAAATCAAGTCACTTAGTTGCTACAACTTAAGCTTTTAGTTTTAGATGAGATGGTCTCACACTTCAGCAATGTCTTTGGAGATGACATGCTGTATTCTTGTGTTCCACAAGGAAACCTATGTGCATTGTTATCATGCAGTCAGTCTGTATACCAACTTCAATAAACTAATATCAACCCAGAAACTTCACGTCTTTGATATCTGTTCTCTTATTGATTTGCTGAATAATTCTTTATTCTGGTGAGCATCTGGAACATCTGTAAACTTTCCCCCCATACTTTATACATCATTTACTCATAAAGGCATAGAGGAGGTAACAAGATTAGTAATTTTCATTTGTCACTCTAGGTGGGTGGAGTGACTGCATTATACCTATCAAGAATCTTGATATAGTCTATACACAGAGCTACTGACTTCCATTCTTTATATTAGAAGATACCTGAATTCTATTGCTTTTGTTTAGTTTGGGTAATACGGTATGTCAGTTTATTTGCCTTGACATTTTTGAAGATTAAGTTACTGCTATTTTTACATTAGAGTTGACTTAGGATCTACCACCTGTTTTACCTCTGCAGGGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTC</genome_strand>
        <mrna_strand>AATTTTCAATTTT-TTTTTTTTGTATTCATCAAAT--ACATATCCATTGTGTACCGGAATTACCAAACCTTTGTAAATTACGGATCTTTAACGTTGTTCACTACTGATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAGTTTTTTTTGGTTACAAGAACCTACAATGATGTCAAGGAGGCCTATCAACCCATCTCGACGTGTAGCAGACAATGGAGCTTCTTTGTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG...........................................................................................................................................GGTGCATTTCTTCTCATAGGGTATTTTTATCGTGACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTTTTATGTACTGTAGAAGTTCAAAAGGCCATTCCTGTTTTGAAGAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTGGCTAAATTGTTAGAAGAGGAAGATACCGAAACTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCTTTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441701" ref_strand="+" ref_description="SGN-E441701 [cSTA-31-M15]">
      <seq>gagagagagagagaacaattttcaattttttttttttgtattcatcaaatacatatccattgtgtaccggaattaccaaacctttgtaaattacggatctttaacgttgttcactactgattcaggaaattagttttttttggttacaagaacctacaatgatgtcaaggaggcctatcaacccatctcgacgtgtagcagacaatggagcttctttgttagaaggctcaattcggtcaaagacacggtctcccccatatttaacaattggacttattattgtgggtgcatttcttctcatagggtatttttatcgtgacacaggtacttttgccagtattaaaggagctatcagtagagtggaaggggattttttatgtactgtagaagttcaaaaggccattcctgttttgaagaaagcatatggtgatagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="75091" stop="78868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75394" g_stop="75505" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="125" r_length="109" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75506" i_stop="76404" i_length="899">
            <donor d_prob="0.597" d_score="0.92"/>
            <acceptor a_prob="0.845" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76405" g_stop="76562" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="284" r_length="159" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76702" g_stop="76741" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="324" r_length="40" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77392" g_stop="77433" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="366" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78498" g_stop="78568" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="437" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E441701" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75394" e_stop="75505"/>
          <exon e_start="76405" e_stop="76562"/>
          <exon e_start="76702" e_stop="76741"/>
          <exon e_start="77392" e_stop="77433"/>
          <exon e_start="78498" e_stop="78568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCAATTTTCTTTTTTTTGTATTCATCAAATACACATATCCATTGTGTACCAGAATTACCAATCATTTGTAAACTACGGATCTTTAACGTTGTTGACTACTGATTCAGGTACAAATGATGTTTTGCCATTGCCTATTTATTTGAAGCAAAGACCTCAAAGCTTCCCTTTTTCCCCCTTGTATCAAAATGGGTACAATTTTGTTTTCTTGCTCTTTGTGTTTGCTAATTGTAGTAAAAGATTGAATTTTTTTTTGTCTCTCCTATTAGTTTCCATTCATGGGTTAGGTTAACAAATACTAGACTGTTAAATGCTTCACCACAATCATTTTTTTTCCTCATATCAAAATGGGTTTAAATGTTGTTTTACTTGCTCCCTAATTATAGTTAAAGATTGAATTTTTGGTCTCTTTCTTGAAACCCTTTTAATTTCTATTCATGGGCGTGGTTAACAAATACTAGTATATGATTAAATGCTTCACCACAATCCTTTGTGGTTTTTAGTTTCCTCATATCAAAATGGGTTTAAATGTTGTTTTCTTACTCTTTTTGCTCCATAATTATAGTTAAAGATTGAATTTTTTTCTCTCTTTCTGGACATCCTTTTAGTTTCCATTCATGGGTGTGGTTAACAAATTCTATAACCAGAATCCTTTGTGTTTTTCCTCATATCAAAATGGGTTGAAGTGTTGTTTTCTTGCTCTTTTTGCTCCCTAATTGTAATGAAAGATTGGATTTTTTGGCTCTTTCTGGACACCCTTTTAGTGTCTGTCATGGGGTGTGGTTAACAAATATCCTTACATGTAAATCCATAGTTACTAATCATTGTTTGCTTAAAAGACTGGTCTTTTCCTAATATTGTGATAATGCCATATTTAGCAACTTCTGTGAAAAAGTCGAAGCTGGCAGATTTAAGAAATTTACCAGCTTTTGGTATCTAGTTTTGATTTTTGACGTAATAAGTTCTTGATTAATTTTTAATAATTAGAATTTGTCTTAATATTACCCAGGAAATTAG-ATTTTTTGGTTACAAGAACCTAAAATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTGGTACTTATTCCCGGATTCTGATGCTATTTGTTATTTAACTGTTATCATTCTGGATGACAGTGGATAAACTTTGGAATATTACTAGCCTCTAGTCATTTAACAGTAATTGTAACTCAATTTTTCCTTTTGGATATTCCAGGTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAGGTTTGTATCTGAATCCTTGGTATTTTATGAATTATTTTTATCTTCGGAAATATAGTGAGATGCCCCCCAAAAATGATGCAAAAAGAAAACAAAATATTTTGGCTGATTGCTCAACACTGGAGTCTGGAGCTGTCTGGTAGCCTATAATTTCTAGTTTAAAATATATACTAACAGCTACGCTCTTTAGTTGACTTGGAGGACTCCTATAGATTCTTTATTTAGAGTAAATTGTATATTGAAAAGAACGATAATACTTGTGCATGAAAGTCTTCCCTTCTCGAGGAAAGAAGATATCGGCATCCACATATGCACAAGTAAAAGATGGCTCATGTGTATTGTTTTCGATATATTTTTTATTTTTTTATCTGCAAACAAATAATGGTCTGTCTTCCCTTTAAACATTTTAGCAAAGGAAAACTGGCCCTACCTCATGTTTTGATGAATGTTTTCTAAATAAAAATCTCAAATGAATCTCTGCTCTCAGTAATGGTCATGCAGATGCAGGTGATTTAATTACACGTCGTGTTTCCTTCTTTCAACTTGAACATTTTGTTCTGCCTAAGTATTGTTCTTTACTTCATTCTTTGTGCTTCTGAGTCTTGTTCCTTACTTTAGTCTGACACTGATAGAGGGATTATCATCGGTTGTAGGTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAGGTAATTACTCGTGCATTATTCTAGAGGATTTGAGTTTTGACGTATTTATATATCAAATGCCACATGAATTATGTGATTTAATTGAAGTACTGAGACTTTTCTTTTAATTGCTTAGTGCTAATGGTTCTAACTATGGACTCATGATCACCTCATATTTGTATCAAGAACTTCAGTTTGGTCCTTAATGATAATCACTGTCACTTCTCTGCCTGGGGCTTTACTCTAACAATCATTATAATAATCTATTATAAGAAGGCTCGTGTAGTAGGAACCATCTAAAATTACTTAAAACAAATGTCTGTTGAGACATAATAAAACCATCTAACGTATCTCTCTAACAGCTCAAGCCTTTGGCAAGTTGGTCAACATGATATCTGAGCAGACTAGAGGTCCTGGGTTCAAATCTCGCAGCCATCCAAAAAGAAAAAAACGTGTTTGGTCCATGAAAACGAATAGGGCCAACAAGTGAGGGTGTGTATTGAGACATTATGAAATCAAGTCACTTAGTTGCTACAACTTAAGCTTTTAGTTTTAGATGAGATGGTCTCACACTTCAGCAATGTCTTTGGAGATGACATGCTGTATTCTTGTGTTCCACAAGGAAACCTATGTGCATTGTTATCATGCAGTCAGTCTGTATACCAACTTCAATAAACTAATATCAACCCAGAAACTTCACGTCTTTGATATCTGTTCTCTTATTGATTTGCTGAATAATTCTTTATTCTGGTGAGCATCTGGAACATCTGTAAACTTTCCCCCCATACTTTATACATCATTTACTCATAAAGGCATAGAGGAGGTAACAAGATTAGTAATTTTCATTTGTCACTCTAGGTGGGTGGAGTGACTGCATTATACCTATCAAGAATCTTGATATAGTCTATACACAGAGCTACTGACTTCCATTCTTTATATTAGAAGATACCTGAATTCTATTGCTTTTGTTTAGTTTGGGTAATACGGTATGTCAGTTTATTTGCCTTGACATTTTTGAAGATTAAGTTACTGCTATTTTTACATTAGAGTTGACTTAGGATCTACCACCTGTTTTACCTCTGCAGGGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATG</genome_strand>
        <mrna_strand>AATTTTCAATTTT-TTTTTTTTGTATTCATCAAAT--ACATATCCATTGTGTACCGGAATTACCAAACCTTTGTAAATTACGGATCTTTAACGTTGTTCACTACTGATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAGTTTTTTTTGGTTACAAGAACCTACAATGATGTCAAGGAGGCCTATCAACCCATCTCGACGTGTAGCAGACAATGGAGCTTCTTTGTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG...........................................................................................................................................GGTGCATTTCTTCTCATAGGGTATTTTTATCGTGACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTTTTATGTACTGTAGAAGTTCAAAAGGCCATTCCTGTTTTGAAGAAAGCATATGGTGATAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338663" ref_strand="+" ref_description="SGN-E338663 [cTOE-15-D12]">
      <seq>aatgatgtcaaggaggcctatcaatccatctcgacgtgtaacagacaatggagcttcttccttagaaggctcaattcggtcaaagacacggtctcccccatatttaacaattggacttattattgtggtatcatttcttctcatagggtatttttaccgtgacacaggtacttttgccagtattaaaggagctatcagtagagtggaaggggattttttatgtactgtagaggttcaaaaggccatttctgttttgaacaaagcatatggtgatagcatgcataaggtgctgcatgttggtcctgatacttgctcggtagttgctaaattgttagaagaggaagataccgaagcttggggtatagaaccatatgatatagaggatgcaggtcatttctgcaagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcgttctctcttgtgatcatctcagatgcgttggattacttgtcttcaaagtatcttaataggactcttcccgaactggccggggtgtcatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="76136" stop="79153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76436" g_stop="76562" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76702" g_stop="76741" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="167" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77392" g_stop="77433" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="209" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78498" g_stop="78853" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="565" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E338663" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76436" e_stop="76562"/>
          <exon e_start="76702" e_stop="76741"/>
          <exon e_start="77392" e_stop="77433"/>
          <exon e_start="78498" e_stop="78853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTGGTACTTATTCCCGGATTCTGATGCTATTTGTTATTTAACTGTTATCATTCTGGATGACAGTGGATAAACTTTGGAATATTACTAGCCTCTAGTCATTTAACAGTAATTGTAACTCAATTTTTCCTTTTGGATATTCCAGGTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAGGTTTGTATCTGAATCCTTGGTATTTTATGAATTATTTTTATCTTCGGAAATATAGTGAGATGCCCCCCAAAAATGATGCAAAAAGAAAACAAAATATTTTGGCTGATTGCTCAACACTGGAGTCTGGAGCTGTCTGGTAGCCTATAATTTCTAGTTTAAAATATATACTAACAGCTACGCTCTTTAGTTGACTTGGAGGACTCCTATAGATTCTTTATTTAGAGTAAATTGTATATTGAAAAGAACGATAATACTTGTGCATGAAAGTCTTCCCTTCTCGAGGAAAGAAGATATCGGCATCCACATATGCACAAGTAAAAGATGGCTCATGTGTATTGTTTTCGATATATTTTTTATTTTTTTATCTGCAAACAAATAATGGTCTGTCTTCCCTTTAAACATTTTAGCAAAGGAAAACTGGCCCTACCTCATGTTTTGATGAATGTTTTCTAAATAAAAATCTCAAATGAATCTCTGCTCTCAGTAATGGTCATGCAGATGCAGGTGATTTAATTACACGTCGTGTTTCCTTCTTTCAACTTGAACATTTTGTTCTGCCTAAGTATTGTTCTTTACTTCATTCTTTGTGCTTCTGAGTCTTGTTCCTTACTTTAGTCTGACACTGATAGAGGGATTATCATCGGTTGTAGGTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAGGTAATTACTCGTGCATTATTCTAGAGGATTTGAGTTTTGACGTATTTATATATCAAATGCCACATGAATTATGTGATTTAATTGAAGTACTGAGACTTTTCTTTTAATTGCTTAGTGCTAATGGTTCTAACTATGGACTCATGATCACCTCATATTTGTATCAAGAACTTCAGTTTGGTCCTTAATGATAATCACTGTCACTTCTCTGCCTGGGGCTTTACTCTAACAATCATTATAATAATCTATTATAAGAAGGCTCGTGTAGTAGGAACCATCTAAAATTACTTAAAACAAATGTCTGTTGAGACATAATAAAACCATCTAACGTATCTCTCTAACAGCTCAAGCCTTTGGCAAGTTGGTCAACATGATATCTGAGCAGACTAGAGGTCCTGGGTTCAAATCTCGCAGCCATCCAAAAAGAAAAAAACGTGTTTGGTCCATGAAAACGAATAGGGCCAACAAGTGAGGGTGTGTATTGAGACATTATGAAATCAAGTCACTTAGTTGCTACAACTTAAGCTTTTAGTTTTAGATGAGATGGTCTCACACTTCAGCAATGTCTTTGGAGATGACATGCTGTATTCTTGTGTTCCACAAGGAAACCTATGTGCATTGTTATCATGCAGTCAGTCTGTATACCAACTTCAATAAACTAATATCAACCCAGAAACTTCACGTCTTTGATATCTGTTCTCTTATTGATTTGCTGAATAATTCTTTATTCTGGTGAGCATCTGGAACATCTGTAAACTTTCCCCCCATACTTTATACATCATTTACTCATAAAGGCATAGAGGAGGTAACAAGATTAGTAATTTTCATTTGTCACTCTAGGTGGGTGGAGTGACTGCATTATACCTATCAAGAATCTTGATATAGTCTATACACAGAGCTACTGACTTCCATTCTTTATATTAGAAGATACCTGAATTCTATTGCTTTTGTTTAGTTTGGGTAATACGGTATGTCAGTTTATTTGCCTTGACATTTTTGAAGATTAAGTTACTGCTATTTTTACATTAGAGTTGACTTAGGATCTACCACCTGTTTTACCTCTGCAGGGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGAT</genome_strand>
        <mrna_strand>AATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG...........................................................................................................................................GTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTTCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCCGGGGTGTCATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262584" ref_strand="+" ref_description="SGN-E262584 [cLEG-63-O20]">
      <seq>ctgatacttgctcggtagttgctaaattgttagaagaggaagataccgaagcttggggtatagaaccatatgatatagaggatgcaggtcatttctgcaagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcgttctctcttgtgatcatctcagatgcgttggattacttgtctccaaagtatcttaataggactcttcccgaactggcgagggtgtcatctgatggactcgttattttcacaggttatccacgccaccataaagttaagtttgcagagaagtccagatttggggggctggctaaattgaggagctcaacgtggtgggtgcgatattttgttcaaacaagtttagaggaaaatgaaattgccatcaagaaattcgagcaagctgcttcgaagaagtcttatgttcctagctgccaaatttttcacttgaaatcttaccgttgatataaatactcaaaatttatacacagtaggactcacgcagagctcgtggatgatggtcaagatatgttgtgacaactttcaagtttcagctgtgttgataagttgtttagaatagcagttgtctccttgaaaattattgagtatgccatcatcttcattagtgtagtcttgttagatatatggaagtatggcagtttgttgatttattgcaaaatggggaattaatttgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="78291" stop="81548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78591" g_stop="78872" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80270" g_stop="80325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="338" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80326" i_stop="80860" i_length="535">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80861" g_stop="81248" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="725" r_length="387" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E262584" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78591" e_stop="78872"/>
          <exon e_start="80270" e_stop="80325"/>
          <exon e_start="80861" e_stop="81248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAGGTAAGAAGAGTTTGTATTGGTTGTTGTGTTTGTATGATTGCCAGTCCAAAATGGAAGTTTATTTTGCATTCATTGTACTGTCCGAGCTAAGCTGCTTCCTATCCTCACTTCCTGTCAATCTGTATTTTGGTGTTTGCCCCTTTGGGTTACAGACATGAGTAGGGAGTATTTATCTCAATCCTAGATAGATGCCTTTTTACCATGTGAAACATATTTTTTTTTATCTTCAGTACTTGGTCATACTAGCACATTTTTCTCGTTGATCAACAAATCTATTTAGAAACTTGATCATTTGTTGCCTTAATTTCAATTTCCTTCCACCTGACGTATCTTATACAGTATGCTTTCAATAGGTTTCAAACCCCCCCTCTTTACTAGGTCCAAAATTGCCCTATTCAGTTTTCTCCTTTGAAGTTGGATTTAAGTTGACTGGGAGAAGTTCTTGTTATCACCATCCTTTCTGCGGCGGAGGATAAAGTACATCACCACTTCTCGTTAGTTACCTAAATATATCAAGAAAAGCTGAATATCTGTAAGATTTTATAGCAGGGACATTAAGGACAAATGTTGGATTTCACACACTAACACACACACGGAAAAGAAGAGGACATCCGTGGTTTTTTTTTTTTTTTAATAAATGGCATTAAACTGCTATCTCATATATGAACATAACAGATGCAGAAGTGAGGAGATTTTGCAATTGGGGGAAATTAGATGACCAGGGTCTATTTATAACTGAAAGAGAGAACCTGTATTTGTAGAACTTAGAAGAATTTAGCAGCAACAGCATGGCTTTTCCCTTTCCTTTTACTGGAAAGGAACAACTTCATTTCTGAATTAATGCAACAGTTGTTTGTTACTGTGAAATAGGATACTTGAGAATTCGTCTCCTTTCCTGTTTATCAGTGATAATATTTTTAAAGAATGATATGGTGATAGTTGGATCTAGTTTTGATGATACCTCACACATACATATCCATCTCCAGTACATGAATGGTTCACAATTGATTCCAAATAGATGCAATGTAGCGTACTTTCAATTCAGCTAGTGTGCTTTTATTCTTGTATAACTTTTGGTCAGTTGACCTCTATAGAGTAACATTTTGTATTTTGGTTGCGTTTGGCGAGTCTGATCACCTTGCTTTCATAGAGCTGTTAACTCCGTCAGTTTTCTCCTTTAAGATTTGACCATGTCACTAAATTACTCCATGCATGGGCTTTCTAAGGAGTTAGAAATGCCTTTAGGGTATTTTGCTACCTTCATCCTTTATACTCCATGATTGCTCAATATAAGACATTGGCTGCATTCTGCATATAAAGACAAGTTAATATGGGAAACCTTGTAATCCAGAGAATTCTTCTGGTGTTAATCTGATGTTAATATCTGATAATTGCAGGTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTGGTAAGTGACCAGTCCTGCATCGTATAAATTCTTATATATTTTTGTTTCACTGTATGGACATTTGATCTCTCATAAATTTTAGGGATGAGGAGCCAAGACTTTAATCCTAGTTTGGAGCCTTCGACCCTTATATGACGTCTTATGGTTATCTATTCTTGCTCTTTTAGTTTAGTTGATCTGAATTCTTAATGGTGTCTTGAAGAAATTGAGTTTATGTCAGCAGTTCATTTGAAACCTCATTATAACATCACCATTCATGCAGTAGCATATCGCTGCTAGTCAAAAGTCAGATTTTCTAGTTTCCGGTGAATAGGAAAGTGTTTATATACATTTCTTGAAGAATGACTTCATGCTGCAATGGTGCTAGCCCAATAAATTGGCAGCCAAAGTTGTATGGTGAAATGTTTTAGTGAATGCCCTGCTCATGATATCTTTCTCTCCGTCTATTTTCCACAGTAACATTGACTTAAATGAACCTTCAATTTTGAAACCTGATGCCATCTAATTCCACCTTTCCTTTATGTTCTCTCCAAAGGCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGATATAAATACTCAAAATTTATACACAGTAGGACTCACGCAGAGCTCGTGGATGATGGTCAAGATATGTTGTGACAACTTTCAAGTTTCAGCTGTGTTGATAAGTTGTTTAGAATAGCAGTTGTCTCCTTGAAAAATTATTGAGTATGCCATCATCTTCATTAGTGTAGTCTTGTTAGATATATGGAGTTATGGCAGTTTGTTGATTTATTGCAAAAATGGGAATTAAATTGCTGTT</genome_strand>
        <mrna_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGATATAAATACTCAAAATTTATACACAGTAGGACTCACGCAGAGCTCGTGGATGATGGTCAAGATATGTTGTGACAACTTTCAAGTTTCAGCTGTGTTGATAAGTTGTTTAGAATAGCAGTTGTCTCCTTG-AAAATTATTGAGTATGCCATCATCTTCATTAGTGTAGTCTTGTTAGATATATGGAAGTATGGCAGTTTGTTGATTTATTGCAAAATGGGGAATTAATTTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262802" ref_strand="+" ref_description="SGN-E262802 [cLEG-63-P20]">
      <seq>ctgatacttgctcggtagttgctaaattgttagaagaggaagataccgaagcttggggtatagaaccatatgatatagaggatgcaggtcatttctgcgagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcattctctcttgtgatcatctcagatgcgttggattacttgtctccaaagtatcttaataggactcttcccgaactggcgagggtgtcatctgatggactcgttattttcacaggttatccacgccaccataaagttaagtttgcagagaagtccacatttggggggctggctaaattgatgagctcaacgtggtgggtgcgatattttgttctgactagtttataggacaatgaagttgtcatcaagaaattctagcaagctgcttcgaagaagacttatgttcctagctgccagatttttcgcttgagatcttaccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="78291" stop="81313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78591" g_stop="78872" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80270" g_stop="80325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="338" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80326" i_stop="80860" i_length="535">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80861" g_stop="81013" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E262802" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78591" e_stop="78872"/>
          <exon e_start="80270" e_stop="80325"/>
          <exon e_start="80861" e_stop="81013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAGGTAAGAAGAGTTTGTATTGGTTGTTGTGTTTGTATGATTGCCAGTCCAAAATGGAAGTTTATTTTGCATTCATTGTACTGTCCGAGCTAAGCTGCTTCCTATCCTCACTTCCTGTCAATCTGTATTTTGGTGTTTGCCCCTTTGGGTTACAGACATGAGTAGGGAGTATTTATCTCAATCCTAGATAGATGCCTTTTTACCATGTGAAACATATTTTTTTTTATCTTCAGTACTTGGTCATACTAGCACATTTTTCTCGTTGATCAACAAATCTATTTAGAAACTTGATCATTTGTTGCCTTAATTTCAATTTCCTTCCACCTGACGTATCTTATACAGTATGCTTTCAATAGGTTTCAAACCCCCCCTCTTTACTAGGTCCAAAATTGCCCTATTCAGTTTTCTCCTTTGAAGTTGGATTTAAGTTGACTGGGAGAAGTTCTTGTTATCACCATCCTTTCTGCGGCGGAGGATAAAGTACATCACCACTTCTCGTTAGTTACCTAAATATATCAAGAAAAGCTGAATATCTGTAAGATTTTATAGCAGGGACATTAAGGACAAATGTTGGATTTCACACACTAACACACACACGGAAAAGAAGAGGACATCCGTGGTTTTTTTTTTTTTTTAATAAATGGCATTAAACTGCTATCTCATATATGAACATAACAGATGCAGAAGTGAGGAGATTTTGCAATTGGGGGAAATTAGATGACCAGGGTCTATTTATAACTGAAAGAGAGAACCTGTATTTGTAGAACTTAGAAGAATTTAGCAGCAACAGCATGGCTTTTCCCTTTCCTTTTACTGGAAAGGAACAACTTCATTTCTGAATTAATGCAACAGTTGTTTGTTACTGTGAAATAGGATACTTGAGAATTCGTCTCCTTTCCTGTTTATCAGTGATAATATTTTTAAAGAATGATATGGTGATAGTTGGATCTAGTTTTGATGATACCTCACACATACATATCCATCTCCAGTACATGAATGGTTCACAATTGATTCCAAATAGATGCAATGTAGCGTACTTTCAATTCAGCTAGTGTGCTTTTATTCTTGTATAACTTTTGGTCAGTTGACCTCTATAGAGTAACATTTTGTATTTTGGTTGCGTTTGGCGAGTCTGATCACCTTGCTTTCATAGAGCTGTTAACTCCGTCAGTTTTCTCCTTTAAGATTTGACCATGTCACTAAATTACTCCATGCATGGGCTTTCTAAGGAGTTAGAAATGCCTTTAGGGTATTTTGCTACCTTCATCCTTTATACTCCATGATTGCTCAATATAAGACATTGGCTGCATTCTGCATATAAAGACAAGTTAATATGGGAAACCTTGTAATCCAGAGAATTCTTCTGGTGTTAATCTGATGTTAATATCTGATAATTGCAGGTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTGGTAAGTGACCAGTCCTGCATCGTATAAATTCTTATATATTTTTGTTTCACTGTATGGACATTTGATCTCTCATAAATTTTAGGGATGAGGAGCCAAGACTTTAATCCTAGTTTGGAGCCTTCGACCCTTATATGACGTCTTATGGTTATCTATTCTTGCTCTTTTAGTTTAGTTGATCTGAATTCTTAATGGTGTCTTGAAGAAATTGAGTTTATGTCAGCAGTTCATTTGAAACCTCATTATAACATCACCATTCATGCAGTAGCATATCGCTGCTAGTCAAAAGTCAGATTTTCTAGTTTCCGGTGAATAGGAAAGTGTTTATATACATTTCTTGAAGAATGACTTCATGCTGCAATGGTGCTAGCCCAATAAATTGGCAGCCAAAGTTGTATGGTGAAATGTTTTAGTGAATGCCCTGCTCATGATATCTTTCTCTCCGTCTATTTTCCACAGTAACATTGACTTAAATGAACCTTCAATTTTGAAACCTGATGCCATCTAATTCCACCTTTCCTTTATGTTCTCTCCAAAGGCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGA</genome_strand>
        <mrna_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCGAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCATTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCACATTTGGGGGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATTGATGAGCTCAACGTGGTGGGTGCGATATTTTGTTCTGACTAGTTTATAGGACAATGAAGTTGTCATCAAGAAATTCTAGCAAGCTGCTTCGAAGAAGACTTATGTTCCTAGCTGCCAGATTTTTCGCTTGAGATCTTACCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262700" ref_strand="+" ref_description="SGN-E262700 [cLEG-63-O21]">
      <seq>ctgatacttgctcggtagttgctaaattgttagaagaggaagataccgaagcttggggtatagaaccatatgatatagaggatgcaggtcatttctgcaagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcgttctctcttgtgatcatctcagatgcgttggattacttgtctccaaagtatcttaataggactcttcccgaactggcgagggtgtcatctgatggactcgttattttcacaggttatccacgccaccataaagttaagtttgcagaaaagtccagaattggggggctggctaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="78291" stop="80631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78591" g_stop="78872" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80270" g_stop="80325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="338" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-E262700" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78591" e_stop="78872"/>
          <exon e_start="80270" e_stop="80325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAGGTAAGAAGAGTTTGTATTGGTTGTTGTGTTTGTATGATTGCCAGTCCAAAATGGAAGTTTATTTTGCATTCATTGTACTGTCCGAGCTAAGCTGCTTCCTATCCTCACTTCCTGTCAATCTGTATTTTGGTGTTTGCCCCTTTGGGTTACAGACATGAGTAGGGAGTATTTATCTCAATCCTAGATAGATGCCTTTTTACCATGTGAAACATATTTTTTTTTATCTTCAGTACTTGGTCATACTAGCACATTTTTCTCGTTGATCAACAAATCTATTTAGAAACTTGATCATTTGTTGCCTTAATTTCAATTTCCTTCCACCTGACGTATCTTATACAGTATGCTTTCAATAGGTTTCAAACCCCCCCTCTTTACTAGGTCCAAAATTGCCCTATTCAGTTTTCTCCTTTGAAGTTGGATTTAAGTTGACTGGGAGAAGTTCTTGTTATCACCATCCTTTCTGCGGCGGAGGATAAAGTACATCACCACTTCTCGTTAGTTACCTAAATATATCAAGAAAAGCTGAATATCTGTAAGATTTTATAGCAGGGACATTAAGGACAAATGTTGGATTTCACACACTAACACACACACGGAAAAGAAGAGGACATCCGTGGTTTTTTTTTTTTTTTAATAAATGGCATTAAACTGCTATCTCATATATGAACATAACAGATGCAGAAGTGAGGAGATTTTGCAATTGGGGGAAATTAGATGACCAGGGTCTATTTATAACTGAAAGAGAGAACCTGTATTTGTAGAACTTAGAAGAATTTAGCAGCAACAGCATGGCTTTTCCCTTTCCTTTTACTGGAAAGGAACAACTTCATTTCTGAATTAATGCAACAGTTGTTTGTTACTGTGAAATAGGATACTTGAGAATTCGTCTCCTTTCCTGTTTATCAGTGATAATATTTTTAAAGAATGATATGGTGATAGTTGGATCTAGTTTTGATGATACCTCACACATACATATCCATCTCCAGTACATGAATGGTTCACAATTGATTCCAAATAGATGCAATGTAGCGTACTTTCAATTCAGCTAGTGTGCTTTTATTCTTGTATAACTTTTGGTCAGTTGACCTCTATAGAGTAACATTTTGTATTTTGGTTGCGTTTGGCGAGTCTGATCACCTTGCTTTCATAGAGCTGTTAACTCCGTCAGTTTTCTCCTTTAAGATTTGACCATGTCACTAAATTACTCCATGCATGGGCTTTCTAAGGAGTTAGAAATGCCTTTAGGGTATTTTGCTACCTTCATCCTTTATACTCCATGATTGCTCAATATAAGACATTGGCTGCATTCTGCATATAAAGACAAGTTAATATGGGAAACCTTGTAATCCAGAGAATTCTTCTGGTGTTAATCTGATGTTAATATCTGATAATTGCAGGTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTG</genome_strand>
        <mrna_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAAAAGTCCAGAATTGGGGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>113</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3813" PGL_stop="3477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3813" e_stop="3477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="3813" e_stop="3477" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3813" stop="3477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACGATGTCATAATCAATTACCGCCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGATACGTGACACTCCGATCCCCTACATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  A  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  D  T  *  H  S  D  P  L  H  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  R  C  H  N  Q  L  P  P  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  S  P  L  V  S  I  R  D  T  P  I  P  Y  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  D  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  V  L  L  C  R  Y  V  T  L  R  S  P  T  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3487" PGL_stop="3724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3487" e_stop="3724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="3487" e_stop="3724" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3487" stop="3724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTATCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGGCGGTAATTGATTATGACATCGTACTTGTTGTT</gDNA_template>
            <first_frame> S  R  T  D  T  *  M  *  G  I  G  V  S  R  I  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  G  G  N  *  L  *  H  R  T  C  C  </first_frame>
            <second_frame>  H  E  P  T  R  R  C  R  G  S  E  C  H  V  S  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  A  V  I  D  Y  D  I  V  L  V  V </second_frame>
            <third_frame>   T  N  R  H  V  D  V  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  W  R  *  L  I  M  T  S  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="5344" PGL_stop="4579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5344" e_stop="4579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="5344" e_stop="4579" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5344" stop="4625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5341" stop="4678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4986" stop="4579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACATAGTAGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATAATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAACTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGAGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGGAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGATAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAATTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGGCCTCTT</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  *  *  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  K  F  I  S  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  S  L  E  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  N  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  R  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  D  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  H  L  L  N  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  L  S  S  S  S  R  G  R  P  P  T  A  S  </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  H  S  R  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  N  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  W  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  T  S  C  *  S  F  V  I  I  G  P  V  V  K  R  G  N  V  P  I  S  N  G  T  F  M  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  G  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  I  T  *  L  I  I  S  G  V  G  W  G  G  S  S  S  F  C  T  C  S  I  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  A  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  I  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  K  I  H  L  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  I  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  F  L  G  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  L  H  A  D  H  L  S  L  *  A  Q  *  S  N  E  E  T  C  L  F  P  M  E  H  S  C  G  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  E  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  *  P  D  *  S  S  L  G  *  V  G  V  V  V  P  H  S  A  L  A  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  H  Q  M  G  *  V  F  V  L  F  L  *  R  T  S  S  H  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5343" stop="5134"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKHSRVAYRDNARNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENNAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5032" stop="4832"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTENFMLIICHYRPSSQTRKRAYFQWNIHAGSHSGCMLYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="4621" PGL_stop="5174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4621" e_stop="5174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="4621" e_stop="5174" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4621" stop="5174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAATTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTATCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTCCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCTCGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAGTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTCCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATTATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  T  T  T  P  T  Y  P  R  D  D  Q  S  G  Y  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  S  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  P  H  E  C  S  I  G  N  R  H  V  S  S  F  D  Y  W  A  Y  N  D  K  *  S  A  *  S  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  P  R  K  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  I  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  I  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  P  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  N  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  V  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  L  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  L  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  P  A  *  M  F  H  W  K  *  A  R  F  L  V  *  L  L  G  L  *  *  Q  M  I  S  M  K  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  S  K  E  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4622" stop="5173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDARAVTPPPTEEVVREGEEGEIEQVQNEELPPQPTPEMINQVIAYLSGLSDQGQAPPVFPAPTPPVSEVQHAATMAPRMNVPLEIGTFPRLTTGPIMTNDQHEVFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWALF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="5248" PGL_stop="6692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5248" e_stop="5434"/>
            <exon e_start="6179" e_stop="6692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="5248" e_stop="5434" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5435" i_stop="6178" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="6179" e_stop="6692" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5248" stop="5434"/>
              <exon start="6179" stop="6692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCTACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTTGTGAGTTTCTAGATGTGTTCCCTACAGATATTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGAGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  V  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  I  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  L  *  V  S  R  C  V  P  Y  R  Y  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  *  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  L  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  C  E  F  L  D  V  F  P  T  D  I  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  Y  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  H  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  F  V  S  F  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5249" stop="5434"/>
                    <exon start="6179" stop="6691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATLLCFSPQERIRRFVKGLRSELWISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVCEFLDVFPTDIPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDESFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="7261" PGL_stop="5906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7261" e_stop="5906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="7261" e_stop="5906" e_length="1356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7261" stop="6552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7261" stop="6669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7261" stop="6739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7190" stop="6514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7190" stop="6835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6744" stop="6086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6675" stop="5914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6675" stop="6015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6448" stop="5906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6272" stop="5942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGATAACAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  I  T  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  F  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  Y  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  S  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  L  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  N  I  C  R  E  H  I  *  K  L  T  N  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  C  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  H  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  N  C  R  A  R  V  K  Q  Y  K  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  C  L  R </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  Q  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  H  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  S  K  V  P  F  I  K  L  M  N  A  A  G  A  F  V  K  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  L  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  I  S  V  G  N  T  S  R  N  S  Q  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  N  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  S  R  P  L  A  N  A  E  D  T  Y  E  I  V  E  P  G  S  N  N  T  K  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  D  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  F  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  T  H  T  *  R  T  W  H  K  A  F  S  P  S  I  F  P  I  P  F  S  N  A  P  H  V  P  S  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  Q  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  N  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  Y  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  Y  L  *  G  T  H  L  E  T  H  K  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  M  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  T  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  Q  D  H  *  Q  M  R  K  I  H  M  K  L  *  S  Q  G  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L  M  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7096" stop="6761"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTLRELGIKLFLPQYFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKSPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6537" stop="6292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGISVGNTSRNSQTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6141" stop="5908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKFTKQDLYTFSTTTDSPTGVETRIGMSSNSQCKSRPLANAEDTYEIVEPGSNNTKAMQSQTERLPVMTASDVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="8741" PGL_stop="8565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8741" e_stop="8565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="8741" e_stop="8565" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8741" stop="8565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="10120" PGL_stop="10806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10120" e_stop="10434"/>
            <exon e_start="10719" e_stop="10806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.886"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="10120" e_stop="10434" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10435" i_stop="10718" i_length="284"/>
          </intron>
          <exon e_serial="2" e_score="0.886">
            <gDNA_exon_boundary e_start="10719" e_stop="10806" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10120" stop="10434"/>
              <exon start="10719" stop="10806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCATAGTAAACTCTTAATAGCAAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTTTTAATAATGAGGCCTTGGTGTAAAAGAAGGCGTGATGACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTAATAGAAGGAGATTAGGGGATCGG : GTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAACCAACACA</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  S  Y  D  I  H  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  T  L  I  S  F  L  I  M  R  P  W  C  K  R  R  R  D  D  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  N  R  R  R  L  G  D  R  :  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  R  R  I  S  G  T  G  V  T  N  Q  H  </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  I  V  N  S  *  *  Q  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  P  *  S  L  F  *  *  *  G  L  G  V  K  E  G  V  M  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G :   C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  V  E  L  V  G  R  V  S  R  T  N  T </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  K  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  F  N  N  E  A  L  V  *  K  K  A  *  *  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S   : G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="10898" PGL_stop="11375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10898" e_stop="11375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="10898" e_stop="11375" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10898" stop="11375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACATACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATGTACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGACTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATCGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTATCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAATAGTAACTCCAGCTAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATACTTCTAGCTTGGACT</gDNA_template>
            <first_frame> H  E  P  T  R  R  C  R  G  S  E  C  H  I  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  C  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  D  Y  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  S  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  *  S  S  L  L  R  I  S  G  *  A  N  T  S  S  L  D  </first_frame>
            <second_frame>  T  N  R  H  V  D  V  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  V  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  D  L  S  P  H  V  *  T  *  R  *  L  I  M  T  S  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  I  V  T  P  A  S  L  H  Y  S  G  Y  Q  G  E  L  I  L  L  A  W  T </second_frame>
            <third_frame>   R  T  D  T  *  M  *  G  I  G  V  S  H  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  M  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  T  *  V  L  M  C  E  L  D  G  N  *  L  *  H  R  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  I  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  *  *  L  Q  L  V  F  I  T  P  D  I  R  V  S  *  Y  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11160" stop="11375"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFDSIVTPASLHYSGYQGELILLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="14196" PGL_stop="14832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14196" e_stop="14832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="14196" e_stop="14832" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14196" stop="14687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14260" stop="14832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGTGAATTTAAGTGGTGCAAAAGGGGTACTATCAAAAACCCAATTTAGGGTACTGTATGTTATATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTATTAGACTAGGCTTGATCCTAGGGTTCTTGAAAACAAACAAGGGGGGTTAAAGATTTTATGCCTAGTACTTTGGATTTTTTATTTTTTTACCTTTGTTGTGTGTCTATAGGATGCTGCATTGAGAGATTTCTTTTGCTTTAAAGCT</gDNA_template>
            <first_frame> L  V  N  L  S  G  A  K  G  V  L  S  K  T  Q  F  R  V  L  Y  V  I  *  L  G  L  G  I  S  A  F  Y  W  H  F  *  L  T  Y  F  R  I  S  E  K  S  C  W  S  L  F  F  I  L  I  L  V  G  L  *  V  V  F  *  F  *  A  S  A  E  T  I  G  I  F  P  *  Q  E  P  F  F  S  L  *  Q  T  P  F  L  I  S  I  L  N  L  L  E  D  K  K  N  R  L  M  *  S  L  *  L  S  L  C  C  F  *  *  *  *  T  K  G  I  C  F  L  F  Y  *  C  E  L  L  F  H  Q  C  F  H  F  S  T  L  C  S  E  S  F  I  L  S  C  L  *  E  L  N  Y  F  L  F  S  M  L  L  D  *  A  *  S  *  G  S  *  K  Q  T  R  G  V  K  D  F  M  P  S  T  L  D  F  L  F  F  Y  L  C  C  V  S  I  G  C  C  I  E  R  F  L  L  L  *  S  </first_frame>
            <second_frame>  W  *  I  *  V  V  Q  K  G  Y  Y  Q  K  P  N  L  G  Y  C  M  L  Y  N  W  G  *  E  L  V  L  F  I  G  I  F  S  *  H  I  S  E  Y  L  K  S  L  V  G  V  Y  S  L  S  *  Y  L  W  G  F  E  L  F  F  D  S  K  L  Q  L  R  Q  L  V  Y  F  L  N  K  N  L  F  F  L  F  N  K  P  H  F  S  S  P  Y  *  I  C  W  K  I  K  R  T  G  *  C  E  A  C  N  F  L  F  A  V  F  N  S  S  K  Q  K  E  S  A  F  F  S  I  S  V  S  C  Y  F  T  N  A  F  I  S  L  L  Y  A  L  K  V  S  Y  F  L  V  S  E  N  *  T  T  F  Y  F  P  C  Y  *  T  R  L  D  P  R  V  L  E  N  K  Q  G  G  L  K  I  L  C  L  V  L  W  I  F  Y  F  F  T  F  V  V  C  L  *  D  A  A  L  R  D  F  F  C  F  K  A </second_frame>
            <third_frame>   G  E  F  K  W  C  K  R  G  T  I  K  N  P  I  *  G  T  V  C  Y  I  I  G  V  R  N  *  C  F  L  L  A  F  L  A  N  I  F  Q  N  I  *  K  V  L  L  E  S  I  L  Y  L  D  T  C  G  A  L  S  C  F  L  I  L  S  F  S  *  D  N  W  Y  I  S  L  T  R  T  F  F  F  S  L  T  N  P  I  S  H  L  H  I  E  F  A  G  R  *  K  E  Q  V  N  V  K  L  V  T  F  S  L  L  F  L  I  V  V  N  K  R  N  L  L  S  F  L  L  V  *  A  V  I  S  P  M  L  S  F  L  Y  F  M  L  *  K  F  H  T  F  L  S  L  R  I  K  L  L  F  I  F  H  V  I  R  L  G  L  I  L  G  F  L  K  T  N  K  G  G  *  R  F  Y  A  *  Y  F  G  F  F  I  F  L  P  L  L  C  V  Y  R  M  L  H  *  E  I  S  F  A  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="18330" PGL_stop="19820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18330" e_stop="18709"/>
            <exon e_start="19786" e_stop="19820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.927"/>
          <exon-only e_score="0.657"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="18330" e_stop="18709" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18710" i_stop="19785" i_length="1076"/>
          </intron>
          <exon e_serial="2" e_score="0.657">
            <gDNA_exon_boundary e_start="19786" e_stop="19820" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18330" stop="18701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424833" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18386" stop="18709"/>
              <exon start="19786" stop="19820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTCGGGACAGATGTTTGCGTTGTTTTACTATGATCAGACGATTCTATTTACCCCAATTGACTGCAAAATGTGTTTTGCATACTTGGACAGAAGATATAGTGAAAATTTACTTTTACTTTTTTCTGGAGTTGTATAGGATATTAGCTCCTAACTCATTTTGTGTTCTTCGAGTTTTAGCAGAAGAGATTATTTTAGATTGGTAAGAAATGAACTGTACATTGAAAACAAGAAACATCATTTGGGGTAAAAGATGTCTTGTTTCAATTATGTTTGTGCAACCTGTAAGAATTTGTTTGAGGATTTCTGAGAGAAACAAACAGTGGTGATTTTCTTGTAAAGTCTTGTCATATCTGAAATGATCATCAATGTAATTGT : ATTTTAAATATAAATATTTAAAAAATTATACAAAA</gDNA_template>
            <first_frame> S  F  S  G  Q  M  F  A  L  F  Y  Y  D  Q  T  I  L  F  T  P  I  D  C  K  M  C  F  A  Y  L  D  R  R  Y  S  E  N  L  L  L  L  F  S  G  V  V  *  D  I  S  S  *  L  I  L  C  S  S  S  F  S  R  R  D  Y  F  R  L  V  R  N  E  L  Y  I  E  N  K  K  H  H  L  G  *  K  M  S  C  F  N  Y  V  C  A  T  C  K  N  L  F  E  D  F  *  E  K  Q  T  V  V  I  F  L  *  S  L  V  I  S  E  M  I  I  N  V  I  V :   F  *  I  *  I  F  K  K  L  Y  K  </first_frame>
            <second_frame>  L  F  R  D  R  C  L  R  C  F  T  M  I  R  R  F  Y  L  P  Q  L  T  A  K  C  V  L  H  T  W  T  E  D  I  V  K  I  Y  F  Y  F  F  L  E  L  Y  R  I  L  A  P  N  S  F  C  V  L  R  V  L  A  E  E  I  I  L  D  W  *  E  M  N  C  T  L  K  T  R  N  I  I  W  G  K  R  C  L  V  S  I  M  F  V  Q  P  V  R  I  C  L  R  I  S  E  R  N  K  Q  W  *  F  S  C  K  V  L  S  Y  L  K  *  S  S  M  *  L   : Y  F  K  Y  K  Y  L  K  N  Y  T  K </second_frame>
            <third_frame>   F  F  G  T  D  V  C  V  V  L  L  *  S  D  D  S  I  Y  P  N  *  L  Q  N  V  F  C  I  L  G  Q  K  I  *  *  K  F  T  F  T  F  F  W  S  C  I  G  Y  *  L  L  T  H  F  V  F  F  E  F  *  Q  K  R  L  F  *  I  G  K  K  *  T  V  H  *  K  Q  E  T  S  F  G  V  K  D  V  L  F  Q  L  C  L  C  N  L  *  E  F  V  *  G  F  L  R  E  T  N  S  G  D  F  L  V  K  S  C  H  I  *  N  D  H  Q  C  N  C  :  I  L  N  I  N  I  *  K  I  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18331" stop="18537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFRDRCLRCFTMIRRFYLPQLTAKCVLHTWTEDIVKIYFYFFLELYRILAPNSFCVLRVLAEEIILDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="27100" PGL_stop="27670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27100" e_stop="27670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="27100" e_stop="27670" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27100" stop="27670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTAATGTCAAAAAACTTGGACAACATGTACTTTGGAGGAACAATATGCACCTCAAAAGACATTATAATACTCCTAGTTATGAAAAAATGTACAATATTTTGGTTACATAATACTCCTCCTGAGAGATTCTCCAAACAAGAAATGAACCAGAGGGAGATTTATGTGTGAAGAAAAGCTGCGTGCTTGCTATACTCTATTCAACTTCCACTAAATTCCTTGTTTAATGTTTCAAAGACAAATTCTTCTTACAAAAGAATATAGCCAAAAGAAAGAAGAAGAAAAAAAAAAGAATTCAGAAGATAAAGAAATTACATTGACACAGTGGGAGGGGGGTTTTGCTTAAAATGAACACTATTCACCATTTCTTAATGGTTTTCTCTATTCATAGATGCTGCATTTGCTCAACCATCTGCTCTAATGTAACTTTGCTTCATCATCTTTTACGGGTTTCCAACGGTTTGCGGAGAGGCGATAAGTCTCCACAATTTCCCCCCATTGCTTACTCTTCTCATTTACAGGAATGTACCAAAGGTCAGGTTCAGCATCTAATTCTTTCCAACTAATATT</gDNA_template>
            <first_frame> L  C  N  V  K  K  L  G  Q  H  V  L  W  R  N  N  M  H  L  K  R  H  Y  N  T  P  S  Y  E  K  M  Y  N  I  L  V  T  *  Y  S  S  *  E  I  L  Q  T  R  N  E  P  E  G  D  L  C  V  K  K  S  C  V  L  A  I  L  Y  S  T  S  T  K  F  L  V  *  C  F  K  D  K  F  F  L  Q  K  N  I  A  K  R  K  K  K  K  K  K  R  I  Q  K  I  K  K  L  H  *  H  S  G  R  G  V  L  L  K  M  N  T  I  H  H  F  L  M  V  F  S  I  H  R  C  C  I  C  S  T  I  C  S  N  V  T  L  L  H  H  L  L  R  V  S  N  G  L  R  R  G  D  K  S  P  Q  F  P  P  I  A  Y  S  S  H  L  Q  E  C  T  K  G  Q  V  Q  H  L  I  L  S  N  *  Y  </first_frame>
            <second_frame>  C  V  M  S  K  N  L  D  N  M  Y  F  G  G  T  I  C  T  S  K  D  I  I  I  L  L  V  M  K  K  C  T  I  F  W  L  H  N  T  P  P  E  R  F  S  K  Q  E  M  N  Q  R  E  I  Y  V  *  R  K  A  A  C  L  L  Y  S  I  Q  L  P  L  N  S  L  F  N  V  S  K  T  N  S  S  Y  K  R  I  *  P  K  E  R  R  R  K  K  K  E  F  R  R  *  R  N  Y  I  D  T  V  G  G  G  F  C  L  K  *  T  L  F  T  I  S  *  W  F  S  L  F  I  D  A  A  F  A  Q  P  S  A  L  M  *  L  C  F  I  I  F  Y  G  F  P  T  V  C  G  E  A  I  S  L  H  N  F  P  P  L  L  T  L  L  I  Y  R  N  V  P  K  V  R  F  S  I  *  F  F  P  T  N  I </second_frame>
            <third_frame>   V  *  C  Q  K  T  W  T  T  C  T  L  E  E  Q  Y  A  P  Q  K  T  L  *  Y  S  *  L  *  K  N  V  Q  Y  F  G  Y  I  I  L  L  L  R  D  S  P  N  K  K  *  T  R  G  R  F  M  C  E  E  K  L  R  A  C  Y  T  L  F  N  F  H  *  I  P  C  L  M  F  Q  R  Q  I  L  L  T  K  E  Y  S  Q  K  K  E  E  E  K  K  K  N  S  E  D  K  E  I  T  L  T  Q  W  E  G  G  F  A  *  N  E  H  Y  S  P  F  L  N  G  F  L  Y  S  *  M  L  H  L  L  N  H  L  L  *  C  N  F  A  S  S  S  F  T  G  F  Q  R  F  A  E  R  R  *  V  S  T  I  S  P  H  C  L  L  F  S  F  T  G  M  Y  Q  R  S  G  S  A  S  N  S  F  Q  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27421" stop="27666"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSGRGVLLKMNTIHHFLMVFSIHRCCICSTICSNVTLLHHLLRVSNGLRRGDKSPQFPPIAYSSHLQECTKGQVQHLILSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="29563" PGL_stop="27134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29563" e_stop="29536"/>
            <exon e_start="29427" e_stop="29119"/>
            <exon e_start="29021" e_stop="28731"/>
            <exon e_start="28635" e_stop="28522"/>
            <exon e_start="28414" e_stop="27134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29563" e_stop="29536" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.971">
            <gDNA_intron_boundary i_start="29535" i_stop="29428" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29427" e_stop="29119" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29021" e_stop="28731" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.426">
            <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28635" e_stop="28522" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.859" acc_prob="0.965">
            <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28414" e_stop="27134" e_length="1281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29563" stop="29536"/>
              <exon start="29427" stop="29119"/>
              <exon start="29021" stop="28731"/>
              <exon start="28635" stop="28575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29300" stop="29119"/>
              <exon start="29021" stop="28731"/>
              <exon start="28635" stop="28522"/>
              <exon start="28414" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29236" stop="29119"/>
              <exon start="29021" stop="28731"/>
              <exon start="28635" stop="28522"/>
              <exon start="28414" stop="28332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29212" stop="29119"/>
              <exon start="29021" stop="28731"/>
              <exon start="28635" stop="28522"/>
              <exon start="28414" stop="28296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28921" stop="28731"/>
              <exon start="28635" stop="28522"/>
              <exon start="28414" stop="28110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28536" stop="28522"/>
              <exon start="28414" stop="28037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28343" stop="27810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28302" stop="27620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28302" stop="27728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28201" stop="27872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27953" stop="27450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27953" stop="27474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27953" stop="27559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27453" stop="27134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGATCCCTATGTGTAATGAAAAAGAG : GTTTATCAGCAATCCATTGGTGCTGTGTGTTGTTTGGAGTGGCCTAAATCAAGATTGTTGATTCAAGTTCTTGATGATTCAGATGATCCAGTTACTCAGACATTGATCAATGAAGAGGTTCGTAAGTGGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG : GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAG : TGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAG : ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACCATTAAGAAATGGTGAATAGTGTTCATTTTAAGCAAAACCCCCCTCCCACTGTGTCAATGTAATTTCTTTATCTTCTGAATTCTTTTTTTTTTCTTCTTCTTTCTTTTGGCTATATTCTTTTGTAAGAAGAATTTGTCTTTGAAACATTAAACAAGGAATTTAGTGGAAGTTGAATAGAGTATAGCAAGCACGCAGCTTTTCTTCACACATAAATCTCCCTCTGGTTCATTTCTTGTTTGGAGAATCTCTCAGGAGGAGTATTATGTAACCAAAATATTGTACATTTTTTCATAACTAGGAGTATTATAATGTCTTTTGAGGTGCATATTGTTCCTCCAAA</gDNA_template>
            <first_frame> S  D  P  Y  V  *  *  K  R   : G  L  S  A  I  H  W  C  C  V  L  F  G  V  A  *  I  K  I  V  D  S  S  S  *  *  F  R  *  S  S  Y  S  D  I  D  Q  *  R  G  S  *  V  A  E  G  R  C  Q  Y  H  I  Q  A  *  S  D  Q  R  G  L  *  S  W  *  S  *  V  S  Y  E  L  Q  L  C  Q  R  L  R  I  C  Y  H  F  R  C  *  F  P  A  Y  A  *  F  S  *  K  N  C  P  L  F  Q   : G  *  *  *  H  R  I  G  S  S  K  M  V  F  C  E  Q  G  *  K  S  T  Y  K  I  A  A  H  *  F  G  F  S  F  *  S  G  A  A  G  *  W  Y  F  S  E  F  L  W  L  *  W  D  C  W  S  M  E  D  *  G  I  R  R  I  W  W  L  V  G  A  D  D  R  *  R  Y  G  H  C  S  Q  G  S  S  T  W  V  E  I  Y  L  S  Q  *  C  R   : V  S  V  *  V  T  G  I  I  *  S  V  *  E  A  T  T  *  M  A  F  G  A  N  A  V  V  S  S  L  F  T  C  H  Y  *  I  K   : D  K  H  M  E  E  G  Q  F  D  I  S  F  L  P  F  E  E  V  G  I  A  I  L  F  I  H  S  V  L  H  N  P  P  N  D  N  V  H  S  *  G  D  A  P  I  M  G  R  L  L  R  P  C  H  H  V  I  S  *  Y  T  S  G  A  *  I  F  P  I  H  R  A  I  P  S  I  R  E  H  H  V  R  Y  Q  V  *  C  H  G  L  W  P  L  P  T  R  K  C  I  R  M  G  S  H  Q  E  I  R  T  F  L  *  G  R  S  C  F  V  S  *  G  K  T  K  T  P  A  S  C  F  R  R  M  D  S  D  Q  E  I  R  T  F  L  *  G  R  S  Y  F  V  G  R  W  E  T  K  T  P  T  R  C  F  R  A  *  F  R  G  I  K  R  G  N  *  R  E  G  E  K  S  F  K  K  E  E  A  Q  Q  N  I  H  K  R  I  G  F  S  F  L  A  V  D  S  F  T  K  E  P  T  I  S  S  R  N  P  L  L  L  L  A  V  S  R  Y  I  I  P  A  R  W  P  R  L  D  R  *  T  G  R  L  N  L  S  *  L  R  D  K  Y  *  L  E  R  I  R  C  *  T  *  P  L  V  H  S  C  K  *  E  E  *  A  M  G  G  N  C  G  D  L  S  P  L  R  K  P  L  E  T  R  K  R  *  *  S  K  V  T  L  E  Q  M  V  E  Q  M  Q  H  L  *  I  E  K  T  I  K  K  W  *  I  V  F  I  L  S  K  T  P  L  P  L  C  Q  C  N  F  F  I  F  *  I  L  F  F  F  F  F  F  L  L  A  I  F  F  C  K  K  N  L  S  L  K  H  *  T  R  N  L  V  E  V  E  *  S  I  A  S  T  Q  L  F  F  T  H  K  S  P  S  G  S  F  L  V  W  R  I  S  Q  E  E  Y  Y  V  T  K  I  L  Y  I  F  S  *  L  G  V  L  *  C  L  L  R  C  I  L  F  L  Q  </first_frame>
            <second_frame>  Q  I  P  M  C  N  E  K  E  :  V  Y  Q  Q  S  I  G  A  V  C  C  L  E  W  P  K  S  R  L  L  I  Q  V  L  D  D  S  D  D  P  V  T  Q  T  L  I  N  E  E  V  R  K  W  Q  K  E  G  A  N  I  I  Y  R  H  R  V  I  R  E  G  Y  K  A  G  N  L  K  S  A  M  N  C  S  Y  V  K  D  Y  E  F  V  T  I  F  D  A  D  F  Q  P  M  P  D  F  L  K  R  T  V  P  Y  F  K  :  D  N  D  D  I  G  L  V  Q  A  R  W  S  F  V  N  K  D  E  N  L  L  T  R  L  Q  H  I  N  L  A  F  H  F  E  V  E  Q  Q  V  N  G  I  F  L  N  F  F  G  F  N  G  T  A  G  V  W  R  I  K  A  L  E  E  S  G  G  W  L  E  R  T  T  V  E  D  M  D  I  A  V  R  A  H  L  H  G  W  K  F  I  F  L  N  D  V  E  :  C  Q  C  E  L  P  E  S  Y  E  A  Y  R  K  Q  Q  H  R  W  H  S  G  P  M  Q  L  F  R  L  C  L  P  A  I  I  K  S  K  :  I  S  I  W  K  K  G  N  L  I  F  L  F  F  L  L  R  K  L  V  L  P  F  Y  S  F  T  L  F  C  I  I  L  P  M  T  M  F  I  P  E  A  T  L  P  S  W  V  V  S  Y  V  P  A  T  M  S  F  L  N  I  L  P  A  P  K  S  F  P  F  I  V  P  Y  L  L  F  E  N  T  M  S  V  T  K  F  N  A  M  V  S  G  L  F  Q  L  G  S  A  Y  E  W  V  V  T  K  K  S  G  R  S  S  E  G  D  L  A  S  L  A  E  E  K  P  K  H  Q  R  V  A  S  E  E  W  T  A  T  K  K  S  G  R  S  S  E  G  D  L  T  L  L  V  D  G  K  P  K  H  Q  R  G  V  S  V  P  D  L  E  E  L  R  E  E  I  K  E  K  E  K  K  A  S  R  K  K  K  H  N  R  I  Y  T  K  E  L  A  L  A  F  L  L  L  T  A  S  L  R  S  L  L  S  A  Q  G  I  H  F  Y  F  L  L  F  Q  G  I  S  F  L  L  V  G  L  D  L  I  G  E  Q  V  D  *  I  F  H  S  L  G  I  N  I  S  W  K  E  L  D  A  E  P  D  L  W  Y  I  P  V  N  E  K  S  K  Q  W  G  E  I  V  E  T  Y  R  L  S  A  N  R  W  K  P  V  K  D  D  E  A  K  L  H  *  S  R  W  L  S  K  C  S  I  Y  E  *  R  K  P  L  R  N  G  E  *  C  S  F  *  A  K  P  P  S  H  C  V  N  V  I  S  L  S  S  E  F  F  F  F  S  S  S  F  F  W  L  Y  S  F  V  R  R  I  C  L  *  N  I  K  Q  G  I  *  W  K  L  N  R  V  *  Q  A  R  S  F  S  S  H  I  N  L  P  L  V  H  F  L  F  G  E  S  L  R  R  S  I  M  *  P  K  Y  C  T  F  F  H  N  *  E  Y  Y  N  V  F  *  G  A  Y  C  S  S  K </second_frame>
            <third_frame>   R  S  L  C  V  M  K  K  R :   F  I  S  N  P  L  V  L  C  V  V  W  S  G  L  N  Q  D  C  *  F  K  F  L  M  I  Q  M  I  Q  L  L  R  H  *  S  M  K  R  F  V  S  G  R  R  K  V  P  I  S  Y  T  G  I  E  *  S  E  R  V  I  K  L  V  I  L  S  Q  L  *  I  A  A  M  S  K  T  T  N  L  L  P  F  S  M  L  I  S  S  L  C  L  I  F  L  K  E  L  S  L  I  S  R :   I  M  M  T  *  D  W  F  K  Q  D  G  L  L  *  T  R  M  K  I  Y  L  Q  D  C  S  T  L  I  W  L  F  I  L  K  W  S  S  R  L  M  V  F  F  *  I  S  L  A  L  M  G  L  L  E  Y  G  G  L  R  H  *  K  N  L  V  V  G  W  S  G  R  P  L  K  I  W  T  L  Q  S  G  L  I  Y  M  G  G  N  L  S  F  S  M  M  *  S :   V  S  V  S  Y  R  N  H  M  K  R  I  G  S  N  N  I  D  G  I  R  G  Q  C  S  C  F  V  S  V  Y  L  P  L  L  N  Q  R :   *  A  Y  G  R  R  A  I  *  Y  F  F  S  S  F  *  G  S  W  Y  C  H  F  I  H  S  L  C  F  A  *  S  S  Q  *  Q  C  S  F  L  R  R  R  S  H  H  G  S  S  L  T  S  L  P  P  C  H  F  L  I  Y  F  R  R  L  N  L  S  H  S  S  C  H  T  F  Y  S  R  T  P  C  P  L  P  S  L  M  P  W  S  L  A  S  S  N  *  E  V  H  T  N  G  *  S  P  R  N  Q  D  V  P  L  R  A  I  L  L  R  *  L  R  K  N  Q  N  T  S  E  L  L  Q  K  N  G  Q  R  P  R  N  Q  D  V  P  L  R  A  I  L  L  C  W  S  M  G  N  Q  N  T  N  E  V  F  P  C  L  I  *  R  N  *  E  R  K  L  K  R  R  R  K  K  L  Q  E  R  R  S  T  T  E  Y  T  Q  K  N  W  L  *  L  S  C  C  *  Q  L  H  *  G  A  Y  Y  Q  L  K  E  S  T  F  T  S  C  C  F  K  V  Y  H  S  C  S  L  A  *  T  *  S  V  N  R  S  I  K  S  F  I  A  *  G  *  I  L  V  G  K  N  *  M  L  N  L  T  F  G  T  F  L  *  M  R  R  V  S  N  G  G  K  L  W  R  L  I  A  S  P  Q  T  V  G  N  P  *  K  M  M  K  Q  S  Y  I  R  A  D  G  *  A  N  A  A  S  M  N  R  E  N  H  *  E  M  V  N  S  V  H  F  K  Q  N  P  P  P  T  V  S  M  *  F  L  Y  L  L  N  S  F  F  F  L  L  L  S  F  G  Y  I  L  L  *  E  E  F  V  F  E  T  L  N  K  E  F  S  G  S  *  I  E  Y  S  K  H  A  A  F  L  H  T  *  I  S  L  W  F  I  S  C  L  E  N  L  S  G  G  V  L  C  N  Q  N  I  V  H  F  F  I  T  R  S  I  I  M  S  F  E  V  H  I  V  P  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29562" stop="29536"/>
                    <exon start="29427" stop="29119"/>
                    <exon start="29021" stop="28731"/>
                    <exon start="28635" stop="28522"/>
                    <exon start="28414" stop="27692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPMCNEKEVYQQSIGAVCCLEWPKSRLLIQVLDDSDDPVTQTLINEEVRKWQKEGANIIYRHRVIREGYKAGNLKSAMNCSYVKDYEFVTIFDADFQPMPDFLKRTVPYFKDNDDIGLVQARWSFVNKDENLLTRLQHINLAFHFEVEQQVNGIFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIKSKISIWKKGNLIFLFFLLRKLVLPFYSFTLFCIILPMTMFIPEATLPSWVVSYVPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLASLAEEKPKHQRVASEEWTATKKSGRSSEGDLTLLVDGKPKHQRGVSVPDLEELREEIKEKEKKASRKKKHNRIYTKELALAFLLLTASLRSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="30619" PGL_stop="29721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30619" e_stop="29721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="30619" e_stop="29721" e_length="899"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30619" stop="29854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30603" stop="30005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30588" stop="30035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30508" stop="29817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30508" stop="29938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30060" stop="29721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCTCTCTCTCTCTCTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAGAATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAGTATTTGTACTCATTGGATTTTCACAAATTTGCTAATCCATTAGCTGTGCAAAGTGTTTTTGATTGGTTTTACTCAAAATGGGTGTTGATTAGGGTGGAGTATCTTGCTCCTCCTCTTCAATTTTTAGCTAATG</gDNA_template>
            <first_frame> G  P  L  S  L  S  L  S  L  H  S  I  Y  C  F  A  N  F  H  I  P  F  I  N  L  C  V  C  V  S  E  C  V  L  S  V  S  V  S  S  Y  L  F  S  F  W  T  L  K  *  V  Q  E  F  K  N  P  T  P  F  S  F  F  S  S  G  F  A  S  I  V  L  I  *  A  E  K  Q  I  K  I  Q  S  L  H  L  *  S  D  F  A  I  W  V  C  F  K  N  G  T  F  I  Y  L  V  G  *  R  N  S  *  G  Y  T  S  S  G  K  N  G  E  S  K  Q  L  V  N  G  *  A  *  R  T  I  R  R  *  F  L  V  T  K  R  *  C  F  F  N  V  S  L  *  T  *  K  S  S  K  Q  E  C  *  T  A  Y  M  G  S  S  S  *  G  S  *  S  C  W  L  F  N  F  Y  S  I  S  I  V  Q  L  S  L  R  R  A  P  P  C  R  C  R  S  D  *  F  Y  R  Q  Q  F  H  *  E  S  G  C  Q  E  P  V  L  Y  L  H  K  D  L  S  L  V  V  G  N  L  V  R  V  *  N  N  S  L  F  Q  R  L  V  L  *  C  T  R  S  S  I  T  V  F  V  L  I  G  F  S  Q  I  C  *  S  I  S  C  A  K  C  F  *  L  V  L  L  K  M  G  V  D  *  G  G  V  S  C  S  S  S  S  I  F  S  *   </first_frame>
            <second_frame>  V  L  S  L  S  L  S  L  Y  I  Q  Y  T  V  L  Q  I  F  I  F  P  L  *  T  S  V  C  V  *  V  S  V  C  F  L  C  L  S  L  L  I  S  S  L  S  G  L  *  N  E  F  K  N  S  K  I  Q  H  P  L  V  S  F  H  L  G  L  L  A  L  C  *  F  E  L  K  N  R  *  R  F  N  L  Y  I  F  K  V  I  L  P  S  G  S  V  S  R  M  A  P  S  F  T  W  W  G  K  E  T  H  R  G  T  P  V  V  V  K  M  E  N  P  N  N  W  S  M  V  E  L  E  G  P  S  E  D  D  F  L  L  P  N  D  D  V  S  S  M  S  P  Y  K  R  E  K  V  R  N  K  N  A  K  Q  L  T  W  V  L  L  L  K  A  H  K  A  A  G  C  L  T  S  I  A  S  A  L  F  S  L  A  S  V  V  R  R  R  V  A  A  G  R  T  D  S  T  D  N  S  S  T  E  N  P  A  V  K  N  R  F  Y  T  C  I  K  I  F  L  W  L  S  V  I  L  L  G  F  E  I  T  A  Y  F  K  G  W  Y  F  S  A  P  D  L  Q  L  Q  Y  L  Y  S  L  D  F  H  K  F  A  N  P  L  A  V  Q  S  V  F  D  W  F  Y  S  K  W  V  L  I  R  V  E  Y  L  A  P  P  L  Q  F  L  A  N  </second_frame>
            <third_frame>   S  S  L  S  L  S  L  S  T  F  N  I  L  F  C  K  F  S  Y  S  L  Y  K  P  L  C  V  C  E  *  V  C  A  F  C  V  C  L  F  L  S  L  L  F  L  D  S  E  M  S  S  R  I  Q  K  S  N  T  L  *  F  L  F  I  W  V  C  *  H  C  V  D  L  S  *  K  T  D  K  D  S  I  F  T  S  L  K  *  F  C  H  L  G  L  F  Q  E  W  H  L  H  L  P  G  G  V  K  K  L  I  G  V  H  Q  *  W  *  K  W  R  I  Q  T  I  G  Q  W  L  S  L  K  D  H  Q  K  M  I  S  C  Y  Q  T  M  M  F  L  Q  C  L  L  I  N  V  K  K  F  E  T  R  M  L  N  S  L  H  G  F  F  F  L  R  L  I  K  L  L  V  V  *  L  L  *  H  Q  H  C  S  A  *  P  P  S  C  A  A  V  S  L  P  V  G  L  I  L  Q  T  T  V  P  L  R  I  R  L  S  R  T  G  S  I  L  A  *  R  S  F  F  G  C  R  *  S  C  *  G  L  K  *  Q  L  I  S  K  A  G  T  L  V  H  Q  I  F  N  Y  S  I  C  T  H  W  I  F  T  N  L  L  I  H  *  L  C  K  V  F  L  I  G  F  T  Q  N  G  C  *  L  G  W  S  I  L  L  L  L  F  N  F  *  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30381" stop="29722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFNLYIFKVILPSGSVSRMAPSFTWWGKETHRGTPVVVKMENPNNWSMVELEGPSEDDFLLPNDDVSSMSPYKREKVRNKNAKQLTWVLLLKAHKAAGCLTSIASALFSLASVVRRRVAAGRTDSTDNSSTENPAVKNRFYTCIKIFLWLSVILLGFEITAYFKGWYFSAPDLQLQYLYSLDFHKFANPLAVQSVFDWFYSKWVLIRVEYLAPPLQFLAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="36040" PGL_stop="36486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36040" e_stop="36486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="36040" e_stop="36486" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36040" stop="36486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAATACACACAAAAAAATAGTTTAATCTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTCATGTATGAAAAAAATTAAAATATACCTTGAATTTTGATAGAAGAATCATATATACCCCTAAATAATTCCTTTTTTAAAAATTAGAAGTAATAAACATAAATTTAAAACTACTTTTTTAACTTCCGTTAAAGGAAGGGTATATGTGAGCCATTTTGTAACAGCAGAGGTATATGTGAGCCGTTTGTATAACGATAAGCGCATATATGAGCCACTTTTATAACGAGGGGTATATCATCTCCAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  I  H  T  K  K  *  F  N  L  L  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  S  C  M  K  K  I  K  I  Y  L  E  F  *  *  K  N  H  I  Y  P  *  I  I  P  F  L  K  I  R  S  N  K  H  K  F  K  T  T  F  L  T  S  V  K  G  R  V  Y  V  S  H  F  V  T  A  E  V  Y  V  S  R  L  Y  N  D  K  R  I  Y  E  P  L  L  *  R  G  V  Y  H  L  Q  M  T  K  L  R  G  I  S  N  P  F  P  F </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  *  Y  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  H  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  L  F  *  K  L  E  V  I  N  I  N  L  K  L  L  F  *  L  P  L  K  E  G  Y  M  *  A  I  L  *  Q  Q  R  Y  M  *  A  V  C  I  T  I  S  A  Y  M  S  H  F  Y  N  E  G  Y  I  I  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  N  T  H  K  K  I  V  *  S  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  I  L  I  E  E  S  Y  I  P  L  N  N  S  F  F  K  N  *  K  *  *  T  *  I  *  N  Y  F  F  N  F  R  *  R  K  G  I  C  E  P  F  C  N  S  R  G  I  C  E  P  F  V  *  R  *  A  H  I  *  A  T  F  I  T  R  G  I  S  S  P  N  D  K  V  E  G  Y  I  K  P  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="45924" PGL_stop="42634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45924" e_stop="45505"/>
            <exon e_start="45266" e_stop="45114"/>
            <exon e_start="43008" e_stop="42634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45924" e_stop="45505" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45504" i_stop="45267" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45266" e_stop="45114" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.957">
            <gDNA_intron_boundary i_start="45113" i_stop="43009" i_length="2105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43008" e_stop="42634" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45924" stop="45505"/>
              <exon start="45266" stop="45114"/>
              <exon start="43008" stop="42968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45846" stop="45505"/>
              <exon start="45266" stop="45114"/>
              <exon start="43008" stop="42973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45547" stop="45505"/>
              <exon start="45266" stop="45114"/>
              <exon start="43008" stop="42634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCCCAAATTTACCAGAATGACTTACTCCGACCGGAAACACCGTCGGAGCTATAAAACCGCCCCTCTTCTGCCTCAAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCG : GAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTG : ATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCTGTTGTATTTGTGGTGATCACTGCTGGAATAGTCATTGTTAAGGTCATTAATGGAAGCATTGGGATGCCCCGCTTACTGCCTAAACTTATTGATCAAGCGTCTTTCTGGAAGCTTTTCACAACTGTTCCAGTACTTGTTACTGCCTATATTTGCCATCACAATAGTAAGTTCTAGCTGTTCATTACTTACACAGTATTGTGTCAAAGAATATCGTTAGTAACAACCCCCTCTGTGATTAAGCAGATAGATAATGCAATTTTCCTTTTTAATGTGATCTTAATACCCAAATCAAGCTGAGGACGTTTCCTCAAAGGCTTTTTGGTATACATGCTTT</gDNA_template>
            <first_frame> F  P  P  N  L  P  E  *  L  T  P  T  G  N  T  V  G  A  I  K  P  P  L  F  C  L  K  R  M  M  L  S  V  T  P  R  P  D  S  M  E  L  P  F  P  E  P  S  S  T  C  Q  L  Q  L  S  A  P  E  S  W  L  F  R  L  R  S  S  N  L  V  Q  F  Q  V  L  S  L  S  Y  L  L  L  Y  *  Q  K  S  R  L  R  C  Y  *  G  S  P  E  L  P  N  A  P  P  T  L  A  S  L  A  M  R  S  V  A  L  V  V  H  C  C  K  L  V  S  *  S  T  I  S  G  P  L  L  S  T  *  S  S  S  :  E  M  F  C  L  G  L  H  Q  M  G  C  I  I  R  V  S  R  K  N  G  L  A  N  I  G  G  I  R  A  P  T  Y  C  F  L  Q  R  S  L  F  L  L  L  L  F  H  S  S  V  L  :  I  H  *  D  T  H  Q  L  C  Q  S  L  W  L  L  Y  L  W  *  S  L  L  E  *  S  L  L  R  S  L  M  E  A  L  G  C  P  A  Y  C  L  N  L  L  I  K  R  L  S  G  S  F  S  Q  L  F  Q  Y  L  L  L  P  I  F  A  I  T  I  V  S  S  S  C  S  L  L  T  Q  Y  C  V  K  E  Y  R  *  *  Q  P  P  L  *  L  S  R  *  I  M  Q  F  S  F  L  M  *  S  *  Y  P  N  Q  A  E  D  V  S  S  K  A  F  W  Y  T  C  F </first_frame>
            <second_frame>  F  P  Q  I  Y  Q  N  D  L  L  R  P  E  T  P  S  E  L  *  N  R  P  S  S  A  S  K  G  *  C  F  Q  S  L  R  G  R  I  R  W  S  F  L  F  R  S  R  L  Q  P  V  N  Y  N  C  R  R  R  N  H  G  S  S  G  Y  A  Q  A  T  W  C  N  S  R  S  Y  R  Y  H  T  C  C  Y  T  D  R  K  V  D  *  D  V  T  E  V  H  Q  S  F  Q  M  L  L  L  L  W  P  R  W  R  C  V  R  W  L  W  S  Y  I  A  A  S  L  C  R  D  Q  Q  S  R  D  P  C  C  L  H  D  H  H  R :   R  C  F  V  W  D  F  I  R  W  G  A  L  F  G  C  H  G  R  M  V  W  P  T  L  V  E  F  A  L  Q  L  T  A  S  Y  N  A  P  C  F  C  S  S  Y  F  I  Q  A  C  * :   F  I  E  I  H  I  S  F  V  S  R  F  G  C  C  I  C  G  D  H  C  W  N  S  H  C  *  G  H  *  W  K  H  W  D  A  P  L  T  A  *  T  Y  *  S  S  V  F  L  E  A  F  H  N  C  S  S  T  C  Y  C  L  Y  L  P  S  Q  *  *  V  L  A  V  H  Y  L  H  S  I  V  S  K  N  I  V  S  N  N  P  L  C  D  *  A  D  R  *  C  N  F  P  F  *  C  D  L  N  T  Q  I  K  L  R  T  F  P  Q  R  L  F  G  I  H  A   </second_frame>
            <third_frame>   S  P  K  F  T  R  M  T  Y  S  D  R  K  H  R  R  S  Y  K  T  A  P  L  L  P  Q  K  D  D  A  F  S  H  S  E  A  G  F  D  G  A  S  F  S  G  A  V  F  N  L  S  T  T  I  V  G  A  G  I  M  A  L  P  A  T  L  K  Q  L  G  A  I  P  G  L  I  V  I  I  L  A  A  I  L  T  E  K  S  I  E  M  L  L  R  F  T  R  A  S  K  C  S  S  Y  S  G  L  A  G  D  A  F  G  G  F  G  R  T  L  L  Q  A  C  V  V  I  N  N  L  G  T  L  V  V  Y  M  I  I  I   : G  D  V  L  S  G  T  S  S  D  G  V  H  Y  S  G  V  T  E  E  W  F  G  Q  H  W  W  N  S  R  S  N  L  L  L  L  T  T  L  L  V  F  A  P  L  I  S  F  K  R  V   : D  S  L  R  Y  T  S  A  L  S  V  A  L  A  V  V  F  V  V  I  T  A  G  I  V  I  V  K  V  I  N  G  S  I  G  M  P  R  L  L  P  K  L  I  D  Q  A  S  F  W  K  L  F  T  T  V  P  V  L  V  T  A  Y  I  C  H  H  N  S  K  F  *  L  F  I  T  Y  T  V  L  C  Q  R  I  S  L  V  T  T  P  S  V  I  K  Q  I  D  N  A  I  F  L  F  N  V  I  L  I  P  K  S  S  *  G  R  F  L  K  G  F  L  V  Y  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45922" stop="45505"/>
                    <exon start="45266" stop="45114"/>
                    <exon start="43008" stop="42794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKFTRMTYSDRKHRRSYKTAPLLPQKDDAFSHSEAGFDGASFSGAVFNLSTTIVGAGIMALPATLKQLGAIPGLIVIILAAILTEKSIEMLLRFTRASKCSSYSGLAGDAFGGFGRTLLQACVVINNLGTLVVYMIIIGDVLSGTSSDGVHYSGVTEEWFGQHWWNSRSNLLLLTTLLVFAPLISFKRVDSLRYTSALSVALAVVFVVITAGIVIVKVINGSIGMPRLLPKLIDQASFWKLFTTVPVLVTAYICHHNSKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="49736" PGL_stop="48846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49736" e_stop="49502"/>
            <exon e_start="49020" e_stop="48846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.667" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49736" e_stop="49502" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.667">
            <gDNA_intron_boundary i_start="49501" i_stop="49021" i_length="481"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="49020" e_stop="48846" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49736" stop="49502"/>
              <exon start="49020" stop="48846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTCTTTATTCGCCGGCGATGGACTTCAAATGCTCCGATTTAGAACAGTGGAAGGAGGCCTTATCTTCTTACGAAGCCAGTATAGAGTCACTTAACAAGCCTAATCTCGTCTCTCTCGATGATTTCTACCGGAATGAGCTTCCCGGCGTTCTCCGGCAACGAAACCCTAGTTACATCACAACTCCCGAACTCTCCAAGCTCATGCAATGGAAGCTTACAAGAGGCAAATGGAG : GCCTAGGTTGTTGGATTTTGTATCATCACTGGACGATGCTGTTGTGAGATCTGCTTCGGAGAAGGCATTTCAGTCTCTACCTGATATCTCAAAAGCTATTTCGGCACTCACTGTCTTGAAAGGCGTTGGTCCAGCTACTGCCTCTGCTGTTCTGGCTGCTTATGCACCGGATACT</gDNA_template>
            <first_frame> F  L  F  I  R  R  R  W  T  S  N  A  P  I  *  N  S  G  R  R  P  Y  L  L  T  K  P  V  *  S  H  L  T  S  L  I  S  S  L  S  M  I  S  T  G  M  S  F  P  A  F  S  G  N  E  T  L  V  T  S  Q  L  P  N  S  P  S  S  C  N  G  S  L  Q  E  A  N  G   : G  L  G  C  W  I  L  Y  H  H  W  T  M  L  L  *  D  L  L  R  R  R  H  F  S  L  Y  L  I  S  Q  K  L  F  R  H  S  L  S  *  K  A  L  V  Q  L  L  P  L  L  F  W  L  L  M  H  R  I   </first_frame>
            <second_frame>  S  S  L  F  A  G  D  G  L  Q  M  L  R  F  R  T  V  E  G  G  L  I  F  L  R  S  Q  Y  R  V  T  *  Q  A  *  S  R  L  S  R  *  F  L  P  E  *  A  S  R  R  S  P  A  T  K  P  *  L  H  H  N  S  R  T  L  Q  A  H  A  M  E  A  Y  K  R  Q  M  E  :  A  *  V  V  G  F  C  I  I  T  G  R  C  C  C  E  I  C  F  G  E  G  I  S  V  S  T  *  Y  L  K  S  Y  F  G  T  H  C  L  E  R  R  W  S  S  Y  C  L  C  C  S  G  C  L  C  T  G  Y  </second_frame>
            <third_frame>   P  L  Y  S  P  A  M  D  F  K  C  S  D  L  E  Q  W  K  E  A  L  S  S  Y  E  A  S  I  E  S  L  N  K  P  N  L  V  S  L  D  D  F  Y  R  N  E  L  P  G  V  L  R  Q  R  N  P  S  Y  I  T  T  P  E  L  S  K  L  M  Q  W  K  L  T  R  G  K  W  R :   P  R  L  L  D  F  V  S  S  L  D  D  A  V  V  R  S  A  S  E  K  A  F  Q  S  L  P  D  I  S  K  A  I  S  A  L  T  V  L  K  G  V  G  P  A  T  A  S  A  V  L  A  A  Y  A  P  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49734" stop="49502"/>
                    <exon start="49020" stop="48846"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLYSPAMDFKCSDLEQWKEALSSYEASIESLNKPNLVSLDDFYRNELPGVLRQRNPSYITTPELSKLMQWKLTRGKWRPRLLDFVSSLDDAVVRSASEKAFQSLPDISKAISALTVLKGVGPATASAVLAAYAPDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="59211" PGL_stop="62792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59211" e_stop="59676"/>
            <exon e_start="59996" e_stop="60107"/>
            <exon e_start="60232" e_stop="60406"/>
            <exon e_start="60643" e_stop="60811"/>
            <exon e_start="61101" e_stop="61319"/>
            <exon e_start="61421" e_stop="61696"/>
            <exon e_start="62088" e_stop="62366"/>
            <exon e_start="62454" e_stop="62792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59211" e_stop="59676" e_length="466"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59996" e_stop="60107" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60232" e_stop="60406" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60643" e_stop="60811" e_length="169"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.754">
            <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61101" e_stop="61319" e_length="219"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61421" e_stop="61696" e_length="276"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="62088" e_stop="62366" e_length="279"/>
          </exon>
          <intron i_serial="7" don_prob="0.928" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="62454" e_stop="62792" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59211" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59241" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59254" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59254" stop="59671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59254" stop="59626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59267" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59267" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59267" stop="59666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59268" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59284" stop="59676"/>
              <exon start="59996" stop="60088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59289" stop="59671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59297" stop="59671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59298" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59298" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59306" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59363" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59365" stop="59676"/>
              <exon start="59996" stop="60056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59373" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59374" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59374" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59392" stop="59676"/>
              <exon start="59996" stop="60096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59400" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59409" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59424" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59476" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59525" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59525" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59527" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59543" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59547" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60003" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60097" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60289" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60386" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60392" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60717" stop="60811"/>
              <exon start="61101" stop="61302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60728" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60728" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60794" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60794" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61139" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61235" stop="61319"/>
              <exon start="61421" stop="61691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61444" stop="61696"/>
              <exon start="62088" stop="62358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61509" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61534" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61545" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61572" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61662" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62148" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62209" stop="62366"/>
              <exon start="62454" stop="62763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62263" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62263" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62263" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62318" stop="62366"/>
              <exon start="62454" stop="62792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG : GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG : ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA : TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAG : GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG : GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG : CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG : AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAAGTATACCTTATCTCTTCTCTGTACATTCATTTTTTTCTCCTTTTT</gDNA_template>
            <first_frame> I  *  Y  M  W  L  V  L  F  N  S  *  K  S  V  L  C  V  *  K  S  L  C  I  D  S  K  A  F  I  R  Y  S  L  I  I  L  L  F  L  F  S  F  L  D  I  *  R  F  T  G  I  V  R  E  A  T  S  S  F  L  L  L  R  S  R  L  P  S  F  F  C  I  V  A  G  D  N  G  G  F  R  S  L  R  I  S  S  C  S  G  V  G  V  R  C  S  F  L  F  F  H  W  S  *  Q  K  *  K  *  W  L  G  N  *  H  H  Y  N  Y  A  V  *  W  R  V  Q  I  K  G  W  K  R  R  R  *  Y  H  H  R  R  C  R  C  C  R  C  C  S  C  S  H  S  W  Q   : G  G  A  S  C  K  S  N  *  K  R  F  D  G  A  *  S  N  C  W  R  T  P  T  T  G  W  L  S  Q  I  A  G  V  G  I  G  R :   L  C  *  E  N  *  C  S  T  R  F  W  V  C  P  F  Q  G  W  K  E  Y  T  S  F  L  S  P  G  E  I  S  L  *  C  F  W  K  E  L  P  Q  W  A  F  H  S  K  N  A  R  E  S  C  S  S  S  Q  :  C  Q  T  R  A  R  H  C  Y  V  S  A  *  R  K  G  D  H  *  R  C  S  V  Q  D  *  I  R  *  R  V  E  S  I  C  T  I  N  C  S  M  *  W  L  F  L  E  S  A  T  Y  P  L  *  S  K   : G  R  S  P  F  L  F  C  W  S  G  P  G  E  L  S  A  S  T  *  K  S  R  T  C  H  F  G  *  S  V  T  Y  L  V  L  S  H  K  Q  Y  *  S  P  L  S  G  *  C  T  W  S  K  S  A  F  Y  F  E  W  *  N  G  Q  I  F  E  K  C  S  C  S  P   : G  P  S  *  D  K  R  C  I  H  C  C  N  *  *  R  K  H  Q  D  N  A  Q  P  K  H  A  S  C  S  S  S  Y  S  W  C  S  S  H  G  *  C  I  Q  H  A  P  P  L  D  W  W  R  N  D  C  S  I  I  *  Y  R  C  I  A  *  S  S  Q  T  S  S  *  F  E  *  C  I  Y  S  L  Q  I  S  G  V  I  L  H  L  A  *   : A  C  G  L  H  H  Q  Y  I  G  W  C  L  V  *  G  I  L  C  F  T  *  S  S  *  E  G  D  A  *  S  M  L  *  L  F  E  P  R  W  S  I  L  R  R  T  S  I  F  A  F  W  L  K  P  S  S  I  K  S  R  L  S  F  L  C  C  G  Y  L  W  C  W  P  L  A  A  S  F  P  I  T  E  T  Y  M  D  W  S  P  A  N  I   : E  C  I  C  N  H  F  P  Y  H  Q  G  R  R  G  Q  T  D  V  L  P  C  Y  C  S  R  I  L  Q  E  A  L  L  K  *  G  C  N  C  Y  K  Q  N  K  A  M  P  L  Y  H  L  H  Q  Y  S  G  C  E  F  Q  E  F  S  P  T  V  A  Q  F  L  V  S  S  L  P  L  *  S  F  S  F  V  P  M  I  D  Y  T  I  N  C  K  V  N  I  S  C  K  S  I  P  Y  L  F  S  V  H  S  F  F  S  P  F  </first_frame>
            <second_frame>  F  S  I  C  G  L  F  C  L  I  R  K  K  V  C  F  V  S  R  N  L  S  V  L  T  A  K  H  S  S  D  T  A  *  *  Y  Y  S  F  Y  F  H  F  *  I  Y  R  D  S  R  A  L  L  E  K  Q  R  R  R  F  S  C  S  V  P  V  S  R  P  F  S  A  L  S  P  A  T  M  V  D  L  G  L  F  G  S  L  L  V  V  V  L  G  F  V  A  V  F  C  F  F  I  G  R  N  K  S  K  N  D  G  S  A  T  S  T  T  T  T  T  L  Y  N  G  E  S  R  S  K  D  G  N  E  D  V  D  I  I  I  V  G  A  G  V  A  G  A  A  L  A  H  T  L  G  K  :  E  G  R  R  V  K  V  I  E  R  D  L  T  E  P  D  R  I  V  G  E  L  L  Q  P  G  G  Y  L  K  L  Q  E  L  G  L  E   : D  C  V  E  K  I  D  A  Q  R  V  F  G  Y  A  L  F  K  D  G  K  S  T  R  L  S  Y  P  L  E  K  F  H  S  D  V  S  G  R  S  F  H  N  G  R  F  I  Q  R  M  R  E  K  A  A  A  L  P  N :   V  K  L  E  Q  G  T  V  T  S  L  L  E  E  K  G  I  I  R  G  V  Q  Y  K  T  K  S  G  E  E  L  K  A  Y  A  P  L  T  V  V  C  D  G  C  F  S  N  L  R  R  T  L  C  D  P  K  :  V  E  V  P  S  C  F  V  G  L  V  L  E  N  C  Q  L  P  H  E  N  H  G  H  V  I  L  A  D  P  S  P  I  L  F  Y  P  I  S  S  T  E  V  R  C  L  V  D  V  P  G  Q  K  V  P  S  I  S  N  G  E  M  A  K  Y  L  K  S  V  V  A  P  Q  :  V  P  P  E  I  K  D  A  F  I  A  A  I  D  K  G  N  I  R  T  M  P  N  R  S  M  P  A  A  P  H  P  T  P  G  A  L  L  M  G  D  A  F  N  M  R  H  P  L  T  G  G  G  M  T  V  A  L  S  D  I  V  V  L  R  D  L  L  K  P  L  R  D  L  N  D  A  S  T  L  C  R  Y  L  E  S  F  Y  T  L  R  K  :  P  V  A  S  T  I  N  T  L  A  G  A  L  Y  K  V  F  C  A  S  P  D  Q  A  R  K  E  M  R  E  A  C  F  D  Y  L  S  L  G  G  V  F  S  E  G  P  V  S  L  L  S  G  L  N  P  R  P  L  S  L  V  C  H  F  F  A  V  A  I  F  G  V  G  R  L  L  L  P  F  P  S  P  K  R  I  W  I  G  A  R  L  I  S  :  S  A  S  A  I  I  F  P  I  I  K  A  E  G  V  R  Q  M  F  F  P  A  T  V  P  A  Y  Y  R  K  P  S  *  S  E  V  V  T  A  I  N  R  I  R  L  C  H  C  T  T  S  I  S  I  L  V  V  S  F  K  S  L  V  Q  L  L  H  N  F  W  F  L  V  F  P  C  N  L  F  P  L  F  P  *  L  I  T  L  L  T  A  K  *  I  *  V  V  K  V  Y  L  I  S  S  L  Y  I  H  F  F  L  L  F </second_frame>
            <third_frame>   L  V  Y  V  A  C  S  V  *  F  V  K  K  C  A  L  C  L  E  I  S  L  Y  *  Q  Q  S  I  H  Q  I  Q  P  N  N  T  T  L  S  I  F  I  F  R  Y  I  E  I  H  G  H  C  *  R  S  N  V  V  V  S  L  A  P  F  P  S  P  V  L  F  L  H  C  R  R  R  Q  W  W  I  *  V  S  S  D  L  F  L  *  W  C  W  G  S  L  Q  F  S  V  F  S  L  V  V  T  K  V  K  M  M  A  R  Q  L  A  P  L  Q  L  R  C  I  M  E  S  P  D  Q  R  M  E  T  K  T  L  I  S  S  S  S  V  P  V  L  P  V  L  L  L  L  T  L  L  A  R :   R  G  V  V  *  K  *  L  K  E  I  *  R  S  L  I  E  L  L  E  N  S  Y  N  R  V  V  I  S  N  C  R  S  W  D  W  K  :  I  V  L  R  K  L  M  L  N  A  F  L  G  M  P  F  S  R  M  E  R  V  H  V  F  L  I  P  W  R  N  F  T  L  M  F  L  E  G  A  S  T  M  G  V  S  F  K  E  C  E  R  K  L  Q  L  F  P   : M  S  N  S  S  K  A  L  L  R  L  C  L  K  K  R  G  S  L  E  V  F  S  T  R  L  N  P  V  K  S  *  K  H  M  H  H  *  L  *  Y  V  M  V  V  S  R  I  C  D  V  P  S  V  I  Q  R :   *  K  S  L  L  V  L  L  V  W  S  W  R  T  V  S  F  H  M  K  I  T  D  M  S  F  W  L  I  R  H  L  S  C  S  I  P  *  A  V  L  K  S  A  V  W  L  M  Y  L  V  K  K  C  L  L  F  R  M  V  K  W  P  N  I  *  K  V  *  L  L  P  R :   S  L  L  R  *  K  M  H  S  L  L  Q  L  I  K  E  T  S  G  Q  C  P  T  E  A  C  Q  L  L  L  I  L  L  L  V  L  F  S  W  V  M  H  S  T  C  A  T  P  *  L  V  E  E  *  L  *  H  Y  L  I  S  L  Y  C  V  I  F  S  N  L  F  V  I  *  M  M  H  L  L  F  A  D  I  W  S  H  F  T  P  C  V  S :   L  W  P  P  P  S  I  H  W  L  V  P  C  I  R  Y  F  V  L  H  L  I  K  L  G  R  R  C  V  K  H  A  L  I  I  *  A  S  V  E  Y  S  Q  K  D  Q  Y  L  C  F  L  A  *  T  L  V  H  *  V  S  F  V  I  S  L  L  W  L  S  L  V  L  A  A  C  C  F  L  S  H  H  R  N  V  Y  G  L  E  P  G  *  Y  R :   V  H  L  Q  S  F  S  L  S  S  R  Q  K  G  S  D  R  C  S  S  L  L  L  F  P  H  I  T  G  S  P  P  E  V  R  L  *  L  L  *  T  E  *  G  Y  A  I  V  P  P  P  S  V  F  W  L  *  V  S  R  V  *  S  N  C  C  T  I  F  G  F  *  S  S  L  V  I  F  F  L  C  S  H  D  *  L  H  Y  *  L  Q  S  K  Y  K  L  *  K  Y  T  L  S  L  L  C  T  F  I  F  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59344" stop="59676"/>
                    <exon start="59996" stop="60107"/>
                    <exon start="60232" stop="60406"/>
                    <exon start="60643" stop="60811"/>
                    <exon start="61101" stop="61319"/>
                    <exon start="61421" stop="61696"/>
                    <exon start="62088" stop="62366"/>
                    <exon start="62454" stop="62552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1659</number_coding_nucleotides>
                  <number_encoded_amino_acids>553</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYRDSRALLEKQRRRFSCSVPVSRPFSALSPATMVDLGLFGSLLVVVLGFVAVFCFFIGRNKSKNDGSATSTTTTTLYNGESRSKDGNEDVDIIIVGAGVAGAALAHTLGKEGRRVKVIERDLTEPDRIVGELLQPGGYLKLQELGLEDCVEKIDAQRVFGYALFKDGKSTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAAALPNVKLEQGTVTSLLEEKGIIRGVQYKTKSGEELKAYAPLTVVCDGCFSNLRRTLCDPKVEVPSCFVGLVLENCQLPHENHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAKYLKSVVAPQVPPEIKDAFIAAIDKGNIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDLNDASTLCRYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMREACFDYLSLGGVFSEGPVSLLSGLNPRPLSLVCHFFAVAIFGVGRLLLPFPSPKRIWIGARLISSASAIIFPIIKAEGVRQMFFPATVPAYYRKPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59211" e_stop="59676"/>
            <exon e_start="59996" e_stop="60107"/>
            <exon e_start="60232" e_stop="60406"/>
            <exon e_start="60643" e_stop="60811"/>
            <exon e_start="61101" e_stop="61319"/>
            <exon e_start="61421" e_stop="62090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59211" e_stop="59676" e_length="466"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59996" e_stop="60107" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60232" e_stop="60406" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60643" e_stop="60811" e_length="169"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.754">
            <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="61101" e_stop="61319" e_length="219"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="61421" e_stop="62090" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59211" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59254" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59254" stop="59671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59254" stop="59626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59267" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59267" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59267" stop="59666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59268" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59284" stop="59676"/>
              <exon start="59996" stop="60088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59289" stop="59671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59297" stop="59671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59298" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59298" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59306" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59363" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59365" stop="59676"/>
              <exon start="59996" stop="60056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59373" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59374" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59374" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59392" stop="59676"/>
              <exon start="59996" stop="60096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59400" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59409" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59424" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59476" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59525" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59525" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59527" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59543" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59547" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60003" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60097" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60392" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60717" stop="60811"/>
              <exon start="61101" stop="61302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60728" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60794" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61235" stop="61319"/>
              <exon start="61421" stop="61691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61438" stop="62090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG : GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG : ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA : TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAG : GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG : GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCT</gDNA_template>
            <first_frame> I  *  Y  M  W  L  V  L  F  N  S  *  K  S  V  L  C  V  *  K  S  L  C  I  D  S  K  A  F  I  R  Y  S  L  I  I  L  L  F  L  F  S  F  L  D  I  *  R  F  T  G  I  V  R  E  A  T  S  S  F  L  L  L  R  S  R  L  P  S  F  F  C  I  V  A  G  D  N  G  G  F  R  S  L  R  I  S  S  C  S  G  V  G  V  R  C  S  F  L  F  F  H  W  S  *  Q  K  *  K  *  W  L  G  N  *  H  H  Y  N  Y  A  V  *  W  R  V  Q  I  K  G  W  K  R  R  R  *  Y  H  H  R  R  C  R  C  C  R  C  C  S  C  S  H  S  W  Q   : G  G  A  S  C  K  S  N  *  K  R  F  D  G  A  *  S  N  C  W  R  T  P  T  T  G  W  L  S  Q  I  A  G  V  G  I  G  R :   L  C  *  E  N  *  C  S  T  R  F  W  V  C  P  F  Q  G  W  K  E  Y  T  S  F  L  S  P  G  E  I  S  L  *  C  F  W  K  E  L  P  Q  W  A  F  H  S  K  N  A  R  E  S  C  S  S  S  Q  :  C  Q  T  R  A  R  H  C  Y  V  S  A  *  R  K  G  D  H  *  R  C  S  V  Q  D  *  I  R  *  R  V  E  S  I  C  T  I  N  C  S  M  *  W  L  F  L  E  S  A  T  Y  P  L  *  S  K   : G  R  S  P  F  L  F  C  W  S  G  P  G  E  L  S  A  S  T  *  K  S  R  T  C  H  F  G  *  S  V  T  Y  L  V  L  S  H  K  Q  Y  *  S  P  L  S  G  *  C  T  W  S  K  S  A  F  Y  F  E  W  *  N  G  Q  I  F  E  K  C  S  C  S  P   : G  P  S  *  D  K  R  C  I  H  C  C  N  *  *  R  K  H  Q  D  N  A  Q  P  K  H  A  S  C  S  S  S  Y  S  W  C  S  S  H  G  *  C  I  Q  H  A  P  P  L  D  W  W  R  N  D  C  S  I  I  *  Y  R  C  I  A  *  S  S  Q  T  S  S  *  F  E  *  C  I  Y  S  L  Q  I  S  G  V  I  L  H  L  A  *  G  K  N  L  L  K  S  F  L  A  *  A  T  Y  L  V  A  V  S  T  T  F  S  T  L  R  I  L  S  E  V  K  T  L  C  *  L  V  S  N  *  G  S  G  T  T  K  L  T  F  L  *  *  F  H  Q  L  S  I  Y  Q  *  Q  C  N  V  K  R  L  G  S  L  R  C  F  R  T  F  *  T  H  S  I  L  L  *  F  A  F  Y  I  K  K  K  R  E  S  K  R  G  *  L  N  S  P  A  A  L  S  D  L  T  R  I  L  L  P  L  *  I  L  T  C  S  A  R  I  F  I  C  S   </first_frame>
            <second_frame>  F  S  I  C  G  L  F  C  L  I  R  K  K  V  C  F  V  S  R  N  L  S  V  L  T  A  K  H  S  S  D  T  A  *  *  Y  Y  S  F  Y  F  H  F  *  I  Y  R  D  S  R  A  L  L  E  K  Q  R  R  R  F  S  C  S  V  P  V  S  R  P  F  S  A  L  S  P  A  T  M  V  D  L  G  L  F  G  S  L  L  V  V  V  L  G  F  V  A  V  F  C  F  F  I  G  R  N  K  S  K  N  D  G  S  A  T  S  T  T  T  T  T  L  Y  N  G  E  S  R  S  K  D  G  N  E  D  V  D  I  I  I  V  G  A  G  V  A  G  A  A  L  A  H  T  L  G  K  :  E  G  R  R  V  K  V  I  E  R  D  L  T  E  P  D  R  I  V  G  E  L  L  Q  P  G  G  Y  L  K  L  Q  E  L  G  L  E   : D  C  V  E  K  I  D  A  Q  R  V  F  G  Y  A  L  F  K  D  G  K  S  T  R  L  S  Y  P  L  E  K  F  H  S  D  V  S  G  R  S  F  H  N  G  R  F  I  Q  R  M  R  E  K  A  A  A  L  P  N :   V  K  L  E  Q  G  T  V  T  S  L  L  E  E  K  G  I  I  R  G  V  Q  Y  K  T  K  S  G  E  E  L  K  A  Y  A  P  L  T  V  V  C  D  G  C  F  S  N  L  R  R  T  L  C  D  P  K  :  V  E  V  P  S  C  F  V  G  L  V  L  E  N  C  Q  L  P  H  E  N  H  G  H  V  I  L  A  D  P  S  P  I  L  F  Y  P  I  S  S  T  E  V  R  C  L  V  D  V  P  G  Q  K  V  P  S  I  S  N  G  E  M  A  K  Y  L  K  S  V  V  A  P  Q  :  V  P  P  E  I  K  D  A  F  I  A  A  I  D  K  G  N  I  R  T  M  P  N  R  S  M  P  A  A  P  H  P  T  P  G  A  L  L  M  G  D  A  F  N  M  R  H  P  L  T  G  G  G  M  T  V  A  L  S  D  I  V  V  L  R  D  L  L  K  P  L  R  D  L  N  D  A  S  T  L  C  R  Y  L  E  S  F  Y  T  L  R  K  V  K  I  F  *  N  P  S  L  H  K  Q  H  I  W  L  L  *  A  P  H  F  L  L  *  E  S  L  V  K  *  K  L  Y  V  D  *  *  V  I  K  D  L  E  P  Q  N  *  H  S  F  D  D  F  T  S  Y  Q  S  T  N  N  N  V  M  *  K  G  L  V  H  Y  D  V  L  G  L  F  E  L  T  Q  F  S  Y  N  L  P  S  T  *  K  K  K  G  R  A  K  E  D  D  S  I  L  L  Q  H  F  Q  T  *  L  E  Y  Y  Y  L  Y  R  Y  *  L  V  L  L  A  Y  L  S  A  A  </second_frame>
            <third_frame>   L  V  Y  V  A  C  S  V  *  F  V  K  K  C  A  L  C  L  E  I  S  L  Y  *  Q  Q  S  I  H  Q  I  Q  P  N  N  T  T  L  S  I  F  I  F  R  Y  I  E  I  H  G  H  C  *  R  S  N  V  V  V  S  L  A  P  F  P  S  P  V  L  F  L  H  C  R  R  R  Q  W  W  I  *  V  S  S  D  L  F  L  *  W  C  W  G  S  L  Q  F  S  V  F  S  L  V  V  T  K  V  K  M  M  A  R  Q  L  A  P  L  Q  L  R  C  I  M  E  S  P  D  Q  R  M  E  T  K  T  L  I  S  S  S  S  V  P  V  L  P  V  L  L  L  L  T  L  L  A  R :   R  G  V  V  *  K  *  L  K  E  I  *  R  S  L  I  E  L  L  E  N  S  Y  N  R  V  V  I  S  N  C  R  S  W  D  W  K  :  I  V  L  R  K  L  M  L  N  A  F  L  G  M  P  F  S  R  M  E  R  V  H  V  F  L  I  P  W  R  N  F  T  L  M  F  L  E  G  A  S  T  M  G  V  S  F  K  E  C  E  R  K  L  Q  L  F  P   : M  S  N  S  S  K  A  L  L  R  L  C  L  K  K  R  G  S  L  E  V  F  S  T  R  L  N  P  V  K  S  *  K  H  M  H  H  *  L  *  Y  V  M  V  V  S  R  I  C  D  V  P  S  V  I  Q  R :   *  K  S  L  L  V  L  L  V  W  S  W  R  T  V  S  F  H  M  K  I  T  D  M  S  F  W  L  I  R  H  L  S  C  S  I  P  *  A  V  L  K  S  A  V  W  L  M  Y  L  V  K  K  C  L  L  F  R  M  V  K  W  P  N  I  *  K  V  *  L  L  P  R :   S  L  L  R  *  K  M  H  S  L  L  Q  L  I  K  E  T  S  G  Q  C  P  T  E  A  C  Q  L  L  L  I  L  L  L  V  L  F  S  W  V  M  H  S  T  C  A  T  P  *  L  V  E  E  *  L  *  H  Y  L  I  S  L  Y  C  V  I  F  S  N  L  F  V  I  *  M  M  H  L  L  F  A  D  I  W  S  H  F  T  P  C  V  R  *  K  S  F  E  I  L  P  C  I  S  N  I  F  G  C  C  K  H  H  I  F  Y  F  E  N  P  *  *  S  K  N  S  M  L  T  S  E  *  L  R  I  W  N  H  K  T  D  I  P  L  M  I  S  P  A  I  N  L  P  I  T  M  *  C  K  K  A  W  F  I  T  M  F  *  D  F  L  N  S  L  N  S  P  I  I  C  L  L  H  K  K  K  K  G  E  Q  K  R  M  T  Q  F  S  C  S  T  F  R  L  N  *  N  I  I  T  F  I  D  I  D  L  F  C  S  H  I  Y  L  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59344" stop="59676"/>
                    <exon start="59996" stop="60107"/>
                    <exon start="60232" stop="60406"/>
                    <exon start="60643" stop="60811"/>
                    <exon start="61101" stop="61319"/>
                    <exon start="61421" stop="61711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYRDSRALLEKQRRRFSCSVPVSRPFSALSPATMVDLGLFGSLLVVVLGFVAVFCFFIGRNKSKNDGSATSTTTTTLYNGESRSKDGNEDVDIIIVGAGVAGAALAHTLGKEGRRVKVIERDLTEPDRIVGELLQPGGYLKLQELGLEDCVEKIDAQRVFGYALFKDGKSTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAAALPNVKLEQGTVTSLLEEKGIIRGVQYKTKSGEELKAYAPLTVVCDGCFSNLRRTLCDPKVEVPSCFVGLVLENCQLPHENHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAKYLKSVVAPQVPPEIKDAFIAAIDKGNIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDLNDASTLCRYLESFYTLRKVKIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62453" e_stop="62723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="62453" e_stop="62723" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62453" stop="62723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACT</gDNA_template>
            <first_frame> E  C  I  C  N  H  F  P  Y  H  Q  G  R  R  G  Q  T  D  V  L  P  C  Y  C  S  R  I  L  Q  E  A  L  L  K  *  G  C  N  C  Y  K  Q  N  K  A  M  P  L  Y  H  L  H  Q  Y  S  G  C  E  F  Q  E  F  S  P  T  V  A  Q  F  L  V  S  S  L  P  L  *  S  F  S  F  V  P  M  I  D  Y  T  I  N  </first_frame>
            <second_frame>  S  A  S  A  I  I  F  P  I  I  K  A  E  G  V  R  Q  M  F  F  P  A  T  V  P  A  Y  Y  R  K  P  S  *  S  E  V  V  T  A  I  N  R  I  R  L  C  H  C  T  T  S  I  S  I  L  V  V  S  F  K  S  L  V  Q  L  L  H  N  F  W  F  L  V  F  P  C  N  L  F  P  L  F  P  *  L  I  T  L  L  T </second_frame>
            <third_frame>   V  H  L  Q  S  F  S  L  S  S  R  Q  K  G  S  D  R  C  S  S  L  L  L  F  P  H  I  T  G  S  P  P  E  V  R  L  *  L  L  *  T  E  *  G  Y  A  I  V  P  P  P  S  V  F  W  L  *  V  S  R  V  *  S  N  C  C  T  I  F  G  F  *  S  S  L  V  I  F  F  L  C  S  H  D  *  L  H  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="75394" PGL_stop="81248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75394" e_stop="75505"/>
            <exon e_start="76405" e_stop="76562"/>
            <exon e_start="76702" e_stop="76741"/>
            <exon e_start="77392" e_stop="77433"/>
            <exon e_start="78498" e_stop="78872"/>
            <exon e_start="80270" e_stop="80325"/>
            <exon e_start="80861" e_stop="81248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.597" acc_prob="0.845" e_score="0.929"/>
          <exon-intron don_prob="0.779" acc_prob="0.925" e_score="0.949"/>
          <exon-intron don_prob="0.980" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.738" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="75394" e_stop="75505" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.597" acc_prob="0.845">
            <gDNA_intron_boundary i_start="75506" i_stop="76404" i_length="899"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="76405" e_stop="76562" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.779" acc_prob="0.925">
            <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76702" e_stop="76741" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.907">
            <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77392" e_stop="77433" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="78498" e_stop="78872" e_length="375"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80270" e_stop="80325" e_length="56"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.738">
            <gDNA_intron_boundary i_start="80326" i_stop="80860" i_length="535"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="80861" e_stop="81248" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75394" stop="75505"/>
              <exon start="76405" stop="76562"/>
              <exon start="76702" stop="76741"/>
              <exon start="77392" stop="77433"/>
              <exon start="78498" stop="78872"/>
              <exon start="80270" stop="80299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75394" stop="75505"/>
              <exon start="76405" stop="76562"/>
              <exon start="76702" stop="76741"/>
              <exon start="77392" stop="77433"/>
              <exon start="78498" stop="78737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75394" stop="75505"/>
              <exon start="76405" stop="76562"/>
              <exon start="76702" stop="76741"/>
              <exon start="77392" stop="77433"/>
              <exon start="78498" stop="78568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76436" stop="76562"/>
              <exon start="76702" stop="76741"/>
              <exon start="77392" stop="77433"/>
              <exon start="78498" stop="78853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78591" stop="78872"/>
              <exon start="80270" stop="80325"/>
              <exon start="80861" stop="81248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78591" stop="78872"/>
              <exon start="80270" stop="80325"/>
              <exon start="80861" stop="81013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78591" stop="78872"/>
              <exon start="80270" stop="80325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTCAATTTTCTTTTTTTTGTATTCATCAAATACACATATCCATTGTGTACCAGAATTACCAATCATTTGTAAACTACGGATCTTTAACGTTGTTGACTACTGATTCAG : GAAATTAGATTTTTTGGTTACAAGAACCTAAAATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG : GTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAG : GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG : GGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG : GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTG : GCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGATATAAATACTCAAAATTTATACACAGTAGGACTCACGCAGAGCTCGTGGATGATGGTCAAGATATGTTGTGACAACTTTCAAGTTTCAGCTGTGTTGATAAGTTGTTTAGAATAGCAGTTGTCTCCTTGAAAAATTATTGAGTATGCCATCATCTTCATTAGTGTAGTCTTGTTAGATATATGGAGTTATGGCAGTTTGTTGATTTATTGCAAAAATGGGAATTAAATTGCTGTT</gDNA_template>
            <first_frame> N  F  Q  F  S  F  F  C  I  H  Q  I  H  I  S  I  V  Y  Q  N  Y  Q  S  F  V  N  Y  G  S  L  T  L  L  T  T  D  S   : G  N  *  I  F  W  L  Q  E  P  K  M  M  S  R  R  P  I  N  P  S  R  R  V  T  D  N  G  A  S  S  L  E  G  S  I  R  S  K  T  R  S  P  P  Y  L  T  I  G  L  I  I  V  :  V  S  F  L  L  I  G  Y  F  Y  R  D  T   : G  T  F  A  S  I  K  G  A  I  S  R  V  E   : G  D  F  L  C  T  V  E  V  Q  K  A  I  S  V  L  N  K  A  Y  G  D  S  M  H  K  V  L  H  V  G  P  D  T  C  S  V  V  A  K  L  L  E  E  E  D  T  E  A  W  G  I  E  P  Y  D  I  E  D  A  G  H  F  C  K  K  L  V  H  K  G  I  V  R  V  A  D  I  K  F  P  L  P  Y  R  A  K  S  F  S  L  V  I  I  S  D  A  L  D  Y  L  S  P  K  Y  L  N  R  T  L  P  E  L  A  R  V  S  S  D  G  L  V  I  F  T   : G  Y  P  R  H  H  K  V  K  F  A  E  K  S  R  F  G  G  L  :  A  K  L  R  S  S  T  W  W  V  R  Y  F  V  Q  T  S  L  E  E  N  E  I  A  I  K  K  F  E  Q  A  A  S  K  K  S  Y  V  P  S  C  Q  I  F  H  L  K  S  Y  R  *  Y  K  Y  S  K  F  I  H  S  R  T  H  A  E  L  V  D  D  G  Q  D  M  L  *  Q  L  S  S  F  S  C  V  D  K  L  F  R  I  A  V  V  S  L  K  N  Y  *  V  C  H  H  L  H  *  C  S  L  V  R  Y  M  E  L  W  Q  F  V  D  L  L  Q  K  W  E  L  N  C  C  </first_frame>
            <second_frame>  I  F  N  F  L  F  F  V  F  I  K  Y  T  Y  P  L  C  T  R  I  T  N  H  L  *  T  T  D  L  *  R  C  *  L  L  I  Q  :  E  I  R  F  F  G  Y  K  N  L  K  *  C  Q  G  G  L  S  I  H  L  D  V  *  Q  T  M  E  L  L  P  *  K  A  Q  F  G  Q  R  H  G  L  P  H  I  *  Q  L  D  L  L  L  W :   Y  H  F  F  S  *  G  I  F  T  V  T  Q  :  V  L  L  P  V  L  K  E  L  S  V  E  W  K  :  G  I  F  Y  V  L  *  R  F  K  R  P  F  L  F  *  T  K  H  M  V  I  A  C  I  R  C  C  M  L  V  L  I  L  A  R  *  L  L  N  C  *  K  R  K  I  P  K  L  G  V  *  N  H  M  I  *  R  M  Q  V  I  S  A  R  N  S  C  I  R  A  L  F  V  W  L  T  *  N  F  L  S  H  I  V  Q  N  R  S  L  L  *  S  S  Q  M  R  W  I  T  C  L  Q  S  I  L  I  G  L  F  P  N  W  R  G  C  H  L  M  D  S  L  F  S  Q  :  V  I  H  A  T  I  K  L  S  L  Q  R  S  P  D  L  G  G  W :   L  N  *  G  A  Q  R  G  G  C  D  I  L  F  K  Q  V  *  R  K  M  K  L  P  S  R  N  S  S  K  L  L  R  R  S  L  M  F  L  A  A  K  F  F  T  *  N  L  T  V  D  I  N  T  Q  N  L  Y  T  V  G  L  T  Q  S  S  W  M  M  V  K  I  C  C  D  N  F  Q  V  S  A  V  L  I  S  C  L  E  *  Q  L  S  P  *  K  I  I  E  Y  A  I  I  F  I  S  V  V  L  L  D  I  W  S  Y  G  S  L  L  I  Y  C  K  N  G  N  *  I  A  V </second_frame>
            <third_frame>   F  S  I  F  F  F  L  Y  S  S  N  T  H  I  H  C  V  P  E  L  P  I  I  C  K  L  R  I  F  N  V  V  D  Y  *  F  R :   K  L  D  F  L  V  T  R  T  *  N  D  V  K  E  A  Y  Q  S  I  S  T  C  N  R  Q  W  S  F  F  L  R  R  L  N  S  V  K  D  T  V  S  P  I  F  N  N  W  T  Y  Y  C   : G  I  I  S  S  H  R  V  F  L  P  *  H  R :   Y  F  C  Q  Y  *  R  S  Y  Q  *  S  G  R :   G  F  F  M  Y  C  R  G  S  K  G  H  F  C  F  E  Q  S  I  W  *  *  H  A  *  G  A  A  C  W  S  *  Y  L  L  G  S  C  *  I  V  R  R  G  R  Y  R  S  L  G  Y  R  T  I  *  Y  R  G  C  R  S  F  L  Q  E  T  R  A  *  G  H  C  S  C  G  *  H  K  I  S  S  P  I  S  C  K  I  V  L  S  C  D  H  L  R  C  V  G  L  L  V  S  K  V  S  *  *  D  S  S  R  T  G  E  G  V  I  *  W  T  R  Y  F  H  R :   L  S  T  P  P  *  S  *  V  C  R  E  V  Q  I  W  G  A   : G  *  I  E  E  L  N  V  V  G  A  I  F  C  S  N  K  F  R  G  K  *  N  C  H  Q  E  I  R  A  S  C  F  E  E  V  L  C  S  *  L  P  N  F  S  L  E  I  L  P  L  I  *  I  L  K  I  Y  T  Q  *  D  S  R  R  A  R  G  *  W  S  R  Y  V  V  T  T  F  K  F  Q  L  C  *  *  V  V  *  N  S  S  C  L  L  E  K  L  L  S  M  P  S  S  S  L  V  *  S  C  *  I  Y  G  V  M  A  V  C  *  F  I  A  K  M  G  I  K  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76413" stop="76562"/>
                    <exon start="76702" stop="76741"/>
                    <exon start="77392" stop="77433"/>
                    <exon start="78498" stop="78872"/>
                    <exon start="80270" stop="80325"/>
                    <exon start="80861" stop="81013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFWLQEPKMMSRRPINPSRRVTDNGASSLEGSIRSKTRSPPYLTIGLIIVVSFLLIGYFYRDTGTFASIKGAISRVEGDFLCTVEVQKAISVLNKAYGDSMHKVLHVGPDTCSVVAKLLEEEDTEAWGIEPYDIEDAGHFCKKLVHKGIVRVADIKFPLPYRAKSFSLVIISDALDYLSPKYLNRTLPELARVSSDGLVIFTGYPRHHKVKFAEKSRFGGLAKLRSSTWWVRYFVQTSLEENEIAIKKFEQAASKKSYVPSCQIFHLKSYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 280 chains have been computed
$ 
$ memory statistics:
$ 349480 bytes spliced alignments in total
$ 113 spliced alignments have been stored
$ 3092 bytes was the average size of a spliced alignment
$ 28792 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1515 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 377 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:47:25
-->
