<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:47:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="4113" stop="3177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3813" g_stop="3477" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3813" e_stop="3477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACGATGTCATAATCAATTACCGCCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGATACGTGACACTCCGATCCCCTACATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="5286" stop="4256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4986" g_stop="4579" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4986" e_stop="4579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAACTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGAGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGGAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGATAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAATTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGGCCTCTT</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="4321" stop="5474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4621" g_stop="5174" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4621" e_stop="5174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAATTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTATCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTCCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCTCGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAGTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTCCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATTATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="4948" stop="6956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5248" g_stop="5434" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5435" i_stop="6178" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6179" g_stop="6692" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5248" e_stop="5434"/>
          <exon e_start="6179" e_stop="6692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCTACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGTGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGAAGGTTACTCAGTCCGACCAATCCAGTCTTCACTACAGACTGTAGTTGGAGGACCACCTCAGACCGGTCAACACTTCTCTGAAAGACCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGTTGGTTATGGAAGAGGTCGTCATTCTGGAGGACGCAGTGGTCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGATAGGCAAACTGGAGCCACTATATCACAACATGGTAGGGGCAACGGATAGACAGGTGAGAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTTTGTATTGTTTGACCCTGGCTCTACAATTTCATATGTATCTTCCGCATTTGCTAATGGTCTTGATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATGTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTTGTGAGTTTCTAGATGTGTTCCCTACAGATATTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGAGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6748" stop="5606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6448" g_stop="5906" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6448" e_stop="5906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6975" stop="5618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6675" g_stop="5918" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6675" e_stop="5918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="6572" stop="5646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6272" g_stop="5942" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6272" e_stop="5942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7044" stop="5786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6744" g_stop="6086" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6744" e_stop="6086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="7561" stop="6252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7261" g_stop="6552" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7261" e_stop="6552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGATAACAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCC---ACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="9041" stop="8264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8741" g_stop="8565" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8741" e_stop="8565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330618" ref_strand="+" ref_description="SGN-U330618        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctcgtgccgtttaagtggtgcaaaaggggtactatcaaaaacccaatttagggtactgtatgttatataattggggttaggaattagtgctttttattggcatttttagctaacatatttcagaatatctgaaaagtcttgttggagtctattctttatcttgatacttgtggggctttgagttgttttttgattctaagcttcagctgagacaattggtatatttccttaacaagaaccttttttttctctttaacaaaccccatttctcatctccatattgaatttgctggaagataaaaagaacaggttaatgtgaagcttgtaactttctctttgctgtttttaatagtagtaaacaaaaggaatctgctttcttttctattagtgtgagctgttatttcaccaatgctttcatttctctactttatgctctgaaagtttcatactttcttgtctctgagaattaaactactttttattttccatgttattagactaggcttgatcctagggttcttgaaaacaaacaaggggggttaaagattttatgcctagtactttggattttttatttttttacctttgttgtgtgtctataagatgctgcattgagagatttcttttgctttaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="13904" stop="15132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14196" g_stop="14832" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U330618" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14196" e_stop="14832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGAA-TTTAAGTGGTGCAAAAGGGGTACTATCAAAAACCCAATTTAGGGTACTGTATGTTATATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTATTAGACTAGGCTTGATCCTAGGGTTCTTGAAAACAAACAAGGGGGGTTAAAGATTTTATGCCTAGTACTTTGGATTTTTTATTTTTTTACCTTTGTTGTGTGTCTATAGGATGCTGCATTGAGAGATTTCTTTTGCTTTAAAGCT</genome_strand>
        <mrna_strand>CTCGTGCCGTTTAAGTGGTGCAAAAGGGGTACTATCAAAAACCCAATTTAGGGTACTGTATGTTATATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTATTAGACTAGGCTTGATCCTAGGGTTCTTGAAAACAAACAAGGGGGGTTAAAGATTTTATGCCTAGTACTTTGGATTTTTTATTTTTTTACCTTTGTTGTGTGTCTATAAGATGCTGCATTGAGAGATTTCTTTTGCTTTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339845" ref_strand="+" ref_description="SGN-U339845        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttttttttttgttttttttttaaaaacacaattatattgatgatcatttcagatatgacaagactttacaagaaaatcaccactgtttgtttctctcaaaaatcctcaaacaaattcttacaggttgcacaaacataattgaaacaagacatcttttaccccaaatgatgtttcttgttttcaatgtacagttcatttcttaccaatctaaaataatctcttctgctaaaactcgaagaacacaaaatgagttaggagctaatatcctatacaactccagaaaaaagtaaaagtaaattttcactatatcttctgtccaagtatgcaaaacacattttgcagtcaattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="74099" stop="18086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23656" g_stop="23627" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.767"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23626" i_stop="18715" i_length="4912">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18714" g_stop="18386" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="359" r_length="329" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U339845" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23656" e_stop="23627"/>
          <exon e_start="18714" e_stop="18386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCGTTTACTTTTATTTATTTATTAGTTTAATAATTCAAAATGTACAAATAAAAATAAACGGGATCGAATTAATCATGTAATTAATGAATTTGTAGCTGGAGTGTAATTACATGGATGTAACACTCTCATCAAATGAACATGAATATCAACATGACTGCATTTAATATAAATATTAGAAAGAGGGACACATCTAATATTATTTATGTAATGTTTGGTGTCACAACCTACTGGCTTTTATGTGACTTATTAACTACCCTATATATATATATATATATTATTTTTTTTTAAATATTTCTTGAGTACTTTATTTTATTTTTGTAAAAGAAATTTTAGTTTTTTTTTCTTCTTTATTAATAACGGTTGATCTAGGTGATTTTTTTTGCTTGTTTTATTAGTTAACAAACTTCCCTGATATCCGTGAATTTGACACGTAAATAGTGACGTGCCTTTATTATAATATAGAGACTTTGCATATATAAATTGCCAATTCATTATAGCTTCCATGTTACTTGTTACAGATATCATATTATACTATATATTATATTTATTTTATAATATATATATAAATTCGAATGAACATGACTCCAAATCGTTATAACTCGAACTAATGTCACCATCGATCATTGTTCTGTTTAACTTGTGACCTTCATGTTTATTCTCTGACAAAAATAACATATAGTATCAAAATAATATTAGAGGTAAAATAATATGACAATATGACACACTTACATTAGATTGGAATTGAACTCAGGTCTCATAGGTGATTTATTAACTTGTACTAGTGTCACAATGATTTTTTACGCTGTTCATATGTATATTGTTAATTACATCTTAATTTTTGTTAGTTTATCAAAATAGATTATACACATGATCTTTTTCAAAGTTAATGAGTTCACGTGCACTCACGTATAAAGGTGAATCCACCTCTGCTTTTGTTTTATTTGGAATATTTTAATTTAATCGTATTTCTCTTTTTAACGCTTTTTAATAAAAAAAATTTATATTTCAAACGAGTCTATGATAATTTTATGAGAAATAATACTAAATATTTTATCATTATTAGAAATAAAATAGATTATCATAACATTAATTATTAAACATGCATGTAGCTTTGATCAATTATTTACTTGTCTTTTATCTTACGTGGAACTTATCTCTTGAGAAATTATAGAATTTGACTAATGTCTTGACGAGGTCGTAAGGGAAGATTGAAAAAAAAAATTAAACATAACACGTGTGTCTAGACAATCATGTTCTAAAGTATTTAATTTGTAATGAAAAAAAAAAATCTTATCATTAACTGTATAAGTTCATGTAGTCAATTATCAATGCACATATAATAATTAATTTTCCTAATTTCATATTTTTTAAAACTAATGATTCTTTTGAAAGTTCGTATCGAACATTTTTCTATCATTCCCCTCAAGAGCTTCTGCTTTTGCTATTTTAATAATTTGAACTTATAAATTATAAATTATAAATTAAAAATGTAGAATATTTACCATTCAAATAACTCTTTCATTGTCTCGAATATCTGCGACAATTCAACGTGAAAAATAAGATTATGGTTTGTTTGGTTTCATGTGACATGTCCTACGAATAAAGAAATTTGATGGCTATATAACCATAAATTTGCCTAATGCTTACATTGCAATTGAGGTGATCTGCCGGCTTCTTATAACAACATATATATAGTAGTCAAGATCTGGTAAGCGAAATGAAATAAATAAAAATATTTAAAATTGTTTTTTTTTAATTTTGAGATAGTAATTCTATTTTTTTTAGAGAAATAAATATTTCAAAATAAATTAATACCTCCTATTAAATATGTAACAAAATTATTTTCAAATTTTATTTCAAAATTATTATCTCAAAACAACCAGAGCGTGTATTATTATTCGAAAATACAATGTCTATTGGCATATGAGTGACTTCAAATTTTTAAAAGAAATTACTAAAAGGAACATTTTTACTTTTGGCAAAAAGCTTTCGAAAGGGAAATGGATAAGAATGAACAAATTTACAACAATGATATCATCTCACTATTTTACTACAAAAATTCCACTCAATAGCCAAATAAAAACGTTGCTTTTAAGTTGAGGAAAATTAACCGCATGTTTTAGTTATATAAATTCAGAATTTACATAATTTAGTTTATAATTATATAGAGTCAGAATTATTGTAATTGCATAGACTATGAATTTATATATGTGTAACTAGCTTGTATATAATTATTCTATTTATACATTTGATTTATATAAGTTATGAATTTTTTTCTAAATGAAAAATTTGTATATACTTAGTATGTTTGTATATTGGCAAGCGAATTACACAAAGCAAATGAAACTACAATGTACAACGTAATTAGGCAAACTGTGGAAAAAGGCTTATTAAATGTAGTTTCTTTGTTATTTATGAAATTTCTTCAATTTGTGGAAAAAAATAATAGTTAAAGTTAGATTTAAACAATTTAAAATCGTGTTTAAGATAACACTACATTGTAAAGTGTATGTCTCATGTATCTACGCAATGGAGTGGTGCGGGCGGGGTGAGCTTAACCCGTAAAGCTTTTAACCCTCCCTGCTTCGTTCTGCATAATAATTTTTTTTTTCATTTTTTACTCGCCTCACCTCACCCTACATAACATTTTTAGGAAAAACTACATAATTAGATATACTTTAATTGATGACGACTTAAAATTTTATTTTCTAGAATGCGCAATCATATTAGTTTTGATTGAACCGTTTTCATGTATTATCTTAGTAATCTTAAGACATGTAAAAAGTTAAAATTTAAATTTAAATCCACATAAATCTGCAACCTGCCTCACAATAATTTTTAAAAAATCTACTGGGCTATATGGTACTTAATGTTTGAAAGTTACTCAAATTAGTTTCAGTATGTTAAGGGTCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTACTTTTGAAAGTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTAAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAACAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTGACATAATAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTTATTACAAATTATTTATAAGAGGAATATAAACTTATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTGTCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATTTTAATAATATATAATTTGAATAGATCACTGGAAAGATTTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACACGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTAGGTAATTTGAAAATTGTATAAAAATATTAAGGGCAAAAAGGTAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTGGAAAAAAAAAGGACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAATTTTTTTACTTAAAATAAGTTGTTTTGAGTATTGCCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACTAGCTTTTAAGCTGAACCAAACATGCTCTAAGACTCATGGCAGCAAACAGCTTAAATTGTTAGCTCAGAAGAATTGCAACTTGTAGTATTTTTTGTATAATTTTTTAAATATTTATATTTAAAATCTTAAAAGTTAAAGTAAGATAATTTAGTTTTATTTTAAAAATTAGTCAAATTATCTCTTACAAAGTAAAGTGTAATAAGTAAAAGTGAATCGAGGAAGTGATAAGACTCTCATTTACACAATATTGTGAACCAATGTTTTCATGGCCCAAGATGTTTAACATGATCGCCAATTCAAGGTTCTTAGCCCAACTTTGTCCAATAATTTGTTGGGCTGAGATGAATTTGGTAAAAAATGGGCTAAGTAAAGGATTATAGGGGTAGCCTTCCCAATTTCTTATCAAATTTTAATCAAAAAAATTATTTATAATTGCACATAATAAATAAATTCTCTTGATTATAACAAAACAAATAAAGAAACAAAATTTATTTTAAATATTTAAACAAGTCGAAAATGTTTCGCAAAAAAAACATCTAGAAGACATATTACAAAAATATTTATGAGCTAAAATATAAAAAAATTTGAGAAAACCACTATATTTATGTAAAAAGGCCCATAAATATCCAAAAAACAGTCTAAATATGGTGAGACTTGTATGTATTGTTTCCCCGATTCGCAATGGAAGGTTCCGTAAAGATATTGCAGAAAAATCATCCCAAGTCATCACAAAAATATTCATGGGTTAATATTTACAACAAACTGAAAATGGCCTAATTTTCGTAAATTGACCGCTAGAAACCAAAAAATCATTCTAAGAATGGTGAGACTGTACGTAGGGCTCCCCAACTCCCTATTAAAGAGTTTCGTAAAAATTTTGCAAATAAATCTTCTGGAAGCCATAACACCAAACTATTCATGTGCTAACACATACGAAATATTGAGAATAGTTCCTATTAATTGCCCCTGAATGCCACAATAATCACTATAAAAATGGTGAAATTGTACTTGTTGCCTTTTCAACTCTCTACAAAGAGTTCCATAAAGATTTCACAAAAAAAATCACTACTTTTTCCATCGAAGATTTAGACCAAAGTTACTGAATTTTGTCAAACCTTAGATCCGCCCGTGGCCTCTCAAGGTACAAAAACATCATAAAGAAGAAATTGACTAGGGGTAATAGACTAAGAAAAAGAAAACACAATTACATTGATGATCATTTCAGATATGACAAGACTTTACAAGAAAATCACCACTGTTTGTTTCTCTCAGAAATCCTCAAACAAATTCTTACAGGTTGCACAAACATAATTGAAACAAGACATCTTTTACCCCAAATGATGTTTCTTGTTTTCAATGTACAGTTCATTTCTTACCAATCTAAAATAATCTCTTCTGCTAAAACTCGAAGAACACAAAATGAGTTAGGAGCTAATATCCTATACAACTCCAGAAAAAAGTAAAAGTAAATTTTCACTATATCTTCTGTCCAAGTATGCAAAACACATTTTGCAGTCAATTGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGTTTTTTTTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACACAATTATATTGATGATCATTTCAGATATGACAAGACTTTACAAGAAAATCACCACTGTTTGTTTCTCTCAAAAATCCTCAAACAAATTCTTACAGGTTGCACAAACATAATTGAAACAAGACATCTTTTACCCCAAATGATGTTTCTTGTTTTCAATGTACAGTTCATTTCTTACCAATCTAAAATAATCTCTTCTGCTAAAACTCGAAGAACACAAAATGAGTTAGGAGCTAATATCCTATACAACTCCAGAAAAAAGTAAAAGTAAATTTTCACTATATCTTCTGTCCAAGTATGCAAAACACATTTTGCAGTCAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319688" ref_strand="+" ref_description="SGN-U319688        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl transferase family 2 protein, similar to cellulose synthase from Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter (gi:710493); contains Pfam glycosyl transferase, group 2 family protein domain PF00535 | chr4:4802338-4805644 REVERSE | Aliases: F1K3.3, F1K3_3(evalue: 0, score=707) genbank/nr: gi|15235900|ref|NP_192536.1| glycosyltransferase family 2 [Arabidopsis thaliana] gi|25407416|pir||B85078 probable glucosyltransferase [imported] - Arabidopsis thaliana gi|4309698|gb|AAD15482.1| putative glucosyltransferase [Arabidopsis thaliana] gi|7267435|emb|CAB77947.1| putative glucosyltransferase [Arabidopsis thaliana] gi|21592678|gb|AAM64627.1| putative glucosyltransferase [Arabidopsis thaliana] gi|26451988|dbj|BAC43084.1| putative glucosyltransferase [Arabidopsis thaliana] gi|31711706|gb|AAP68209.1| At4g07960 [Arabidopsis thaliana](evalue: 0, score=707)">
      <seq>tcagatccctatgtgtaatgaaaaagaggtttatcagcaatccattggtgctgtgtgttgtttggagtggcctaaatcaagattgttgattcaagttcttgatgattcagatgatccagttactcagacattgatcaatgaagaggttcgtaagtggcagaaggaaggtgccaatatcatatacaggcatagagtgatcagagagggttataaagctggtaatcttaagtcagctatgaattgcagctatgtcaaagactacgaatttgttaccattttcgatgctgatttccagcctatgcctgattttcttaaaagaactgtcccttatttcaaggataatgatgacataggattggttcaagcaagatggtcttttgtgaacaaggatgaaaatctacttacaagattgcagcacattaatttggcttttcattttgaagtggagcagcaggttaatggtatttttctgaatttctttggctttaatgggactgctggagtatggaggattaaggcattagaagaatctggtggttggttggagcggacgaccgttgaagatatggacattgcagtcagggctcatctacatgggtggaaatttatctttctcaatgatgtagagtgtcagtgtgagttaccggaatcatatgaagcgtataggaagcaacaacatagatggcattcggggccaatgcagttgtttcgtctctgtttacctgccattattaaatcaaagataagcatatggaagaagggcaatttgatatttcttttcttccttttgaggaagttggtattgccattttattcattcactctgttttgcataatcctcccaatgacaatgttcattcctgaggcgacgctcccatcatgggtcgtctcttacgtccctgccaccatgtcatttcttaatatacttccggcgcctaaatctttcccattcatcgtgccataccttctattcgagaacaccatgtccgttaccaagtttaatgccatggtctctggcctcttccaactaggaagtgcatacgaatgggtagtcaccaagaaatcaggacgttcctctgagggcgatcttgcttcgttagctgaggaaaaaccaaaacaccagcgagttgcttcagaagaatggacagcgaccaagaaatcaggacgttcctctgagggcgatcttactttgttggtcgatgggaaaccaaaacaccaacgaggtgtttccgtgcctgatttagaggaattaagagaggaaattaaagagaaggagaaaaaagcttcaagaaagaagaagcacaacagaatatacacaaaagaattggctttagctttcttgctgttgacagcttcactaaggagcctactatcagctcaaggaatccacttttacttcttgctgtttcaaggtatatcattcctgctcgttggcctagacttgatcggtgaacaggtcgattaaatctttcatagcttagggataaatattagttggaaagaattagatgctgaacctgacctttggtacattcctgtaaatgagaagagtaagcaatggggggaaattgtggagacttatcgcctctccgcaaaccgttggaaacccgtaaaagatgatgaagcaaagttacattagagcagatggttgagcaaatgcagcatctatgaatagagaaaaccattaagaaatggtgaatagtgttcattttaagcaaaacccccctcccactgtgtcaatgtaatttctttatcttctgaattcttttttttttcttcttctttcttttggctatattcttttgtaagaagaatttgtctttgaaacattaaacaaggaatttagtggaagttgaatagagtatagcaagcacgcagcttttcttcacacataaatctccctctggttcatttcttgtttggagaatctctcaggaggagtattatgtaaccaaaatattgtacattttttcataactaggagtattataatgtcttttgaggtgcatattgttcctcccaagtacatgttgtccaagttttttgacattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="29863" stop="26800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29563" g_stop="29536" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29535" i_stop="29428" i_length="108">
            <donor d_prob="0.946" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29427" g_stop="29119" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="337" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29021" g_stop="28731" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="628" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28635" g_stop="28522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="742" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28414" g_stop="27100" g_length="1315"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="2057" r_length="1315" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U319688" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2057</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29563" e_stop="29536"/>
          <exon e_start="29427" e_stop="29119"/>
          <exon e_start="29021" e_stop="28731"/>
          <exon e_start="28635" e_stop="28522"/>
          <exon e_start="28414" e_stop="27100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCCCTATGTGTAATGAAAAAGAGGTAAAACTATAGTAAATTTTTTTTTTGTCTTTCCAAGATTTTGTGTTTAATTGTTTATCAAGAACTCATTTTTATATTGTCGGTGGGAATTGTTGTTATTTTTATCAGGTTTATCAGCAATCCATTGGTGCTGTGTGTTGTTTGGAGTGGCCTAAATCAAGATTGTTGATTCAAGTTCTTGATGATTCAGATGATCCAGTTACTCAGACATTGATCAATGAAGAGGTTCGTAAGTGGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAGGTATATTCGATTACCTTCATATGTGATGTAATTTGTGTTGTATGCTATCACTTTAGTGTAGAATGTGGTGCTTATGATGTGAGTGGTTTGTTTGTAGGATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAGGTAAAATTCATTGCAAAAGCTTCGTTTTCGAGTATAGCTTTATTGAAAGTAGTTGCTTTGTGTTGAGCCTAAAGAAGAATTTATTGGTACTTTAGTGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAGGTATTGTGGAATGCATCCATTCAAGTGATATCCGATTCTATTTGTTAAGTTTTAGCATATTTGGATGTTGTGCCTAACAATAATGCTTGCAATATGGTTGGATGCAGATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACCATTAAGAAATGGTGAATAGTGTTCATTTTAAGCAAAACCCCCCTCCCACTGTGTCAATGTAATTTCTTTATCTTCTGAATTCTTTTTTTTTTCTTCTTCTTTCTTTTGGCTATATTCTTTTGTAAGAAGAATTTGTCTTTGAAACATTAAACAAGGAATTTAGTGGAAGTTGAATAGAGTATAGCAAGCACGCAGCTTTTCTTCACACATAAATCTCCCTCTGGTTCATTTCTTGTTTGGAGAATCTCTCAGGAGGAGTATTATGTAACCAAAATATTGTACATTTTTTCATAACTAGGAGTATTATAATGTCTTTTGAGGTGCATATTGTTCCTCCAAAGTACATGTTGTCCAAGTTTTTTGACATTACACAA</genome_strand>
        <mrna_strand>TCAGATCCCTATGTGTAATGAAAAAGAG............................................................................................................GTTTATCAGCAATCCATTGGTGCTGTGTGTTGTTTGGAGTGGCCTAAATCAAGATTGTTGATTCAAGTTCTTGATGATTCAGATGATCCAGTTACTCAGACATTGATCAATGAAGAGGTTCGTAAGTGGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG.................................................................................................GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAG...............................................................................................TGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAG...........................................................................................................ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACCATTAAGAAATGGTGAATAGTGTTCATTTTAAGCAAAACCCCCCTCCCACTGTGTCAATGTAATTTCTTTATCTTCTGAATTCTTTTTTTTTTCTTCTTCTTTCTTTTGGCTATATTCTTTTGTAAGAAGAATTTGTCTTTGAAACATTAAACAAGGAATTTAGTGGAAGTTGAATAGAGTATAGCAAGCACGCAGCTTTTCTTCACACATAAATCTCCCTCTGGTTCATTTCTTGTTTGGAGAATCTCTCAGGAGGAGTATTATGTAACCAAAATATTGTACATTTTTTCATAACTAGGAGTATTATAATGTCTTTTGAGGTGCATATTGTTCCTCCCAAGTACATGTTGTCCAAGTTTTTTGACATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344197" ref_strand="+" ref_description="SGN-U344197        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl transferase family 2 protein, similar to cellulose synthase from Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter (gi:710493); contains Pfam glycosyl transferase, group 2 family protein domain PF00535 | chr4:4802338-4805644 REVERSE | Aliases: F1K3.3, F1K3_3(evalue: 7e-54, score=207) genbank/nr: gi|15235900|ref|NP_192536.1| glycosyltransferase family 2 [Arabidopsis thaliana] gi|25407416|pir||B85078 probable glucosyltransferase [imported] - Arabidopsis thaliana gi|4309698|gb|AAD15482.1| putative glucosyltransferase [Arabidopsis thaliana] gi|7267435|emb|CAB77947.1| putative glucosyltransferase [Arabidopsis thaliana] gi|21592678|gb|AAM64627.1| putative glucosyltransferase [Arabidopsis thaliana] gi|26451988|dbj|BAC43084.1| putative glucosyltransferase [Arabidopsis thaliana] gi|31711706|gb|AAP68209.1| At4g07960 [Arabidopsis thaliana](evalue: 5e-52, score=207)">
      <seq>cgtcttctctctctctctctctctctacattcaatatactgttttgcaaattttcatattccctttataaacctctgtgtgtgtgtgagtgagtgtgtgctttctgtgtctgtctcttcttatctcttctctttctggactctgaaatgagttcaagaattcaaaaatccaacaccctttagtttcttttcatctgggtttgctagcattgtgttgatttgagctgaaaaacagataaagattcaatctttacatctttaaagtgattttgccatctgggtctgtttcaagaatggcaccttcatttacctggtggggtaaagaaactcataggggtacaccagtagtggtaaaaatggagaatccaaacaattggtcaatggttgagcttgaaggaccatcagaagatgatttcttgttaccaaacgatgatgtttcttcaatgtctccttataaacgtgaaaaagttcgaaacaagaatgctaaacagcttacatgggttcttcttcttaaggctcataaagctgctggttgtttaacttctatagcatcagcattgttcagcttagcctccgtcgtgcgccgccgtgtcgctgccggtcggactgattctacagacaacagttccactgagaatccggctgtcaagaaccggttctatacttgcataaagatctttctttggttgtcggtaatcttgttagggtttgaaataacagcttatttcagaggctggtactttagtgcaccagatcttcaattacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="30918" stop="29554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30619" g_stop="29854" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U344197" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30619" e_stop="29854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTCTCTCTCTCTCTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAGAATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAG</genome_strand>
        <mrna_strand>CGTCTTCTCTCTCTCTCTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAGAATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAGAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="35740" stop="36792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36040" g_stop="36486" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36040" e_stop="36486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAATACACACAAAAAAATAGTTTAATCTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTCATGTATGAAAAAAATTAAAATATACCTTGAATTTTGATAGAAGAATCATATATACCCCTAAATAATTCCTTT-TTTAAAAATTAGAAGTAATAAACATAAATTTAAAACTACTTTTTTAACTTCCGTTAAAGGAAGGGTATATGTGAGCCATTTTGTAACAGCAGAGGTATATGTGAGCCGTTTGTATAACGATAAGCGCATATATGAGCCACTTTTATAACGAGGGGTATATCATCTCCAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAAT-ACACACA-AAAAAAATATTTGAAT-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328438" ref_strand="+" ref_description="SGN-U328438        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:At5g38820.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:NP_910699.1); similar to putative system A transporter isoform 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD37809.1); contains InterPro domain Amino acid/polyamine transporter, family II (InterPro:IPR002422); contains InterPro domain Aromatic amino acid permease (InterPro:IPR002091) | chr3:11979316-11982100 REVERSE | Aliases: None(evalue: 6e-74, score=274) genbank/nr: gi|51535770|dbj|BAD37809.1| putative system A transporter isoform 2 [Oryza sativa (japonica cultivar-group)] (evalue: 4e-75, score=284)">
      <seq>tttcccccaaatttaccagaatgacttactccgaccggaaacaccgtcggagctataaaaccgcccctcttctgcctcaaaaggatgatgctttcagtcactccgaggccggattcgatggagcttccttttccggagccgtcttcaacctgtcaactacaattgtcggcgccggaatcatggctcttccggctacgctcaagcaacttggtgcaattccaggtcttatcgttatcatacttgctgctatactgacagaaaagtcgattgagatgttactgaggttcaccagagcttccaaatgctcctcctactctggcctcgctggcgatgcgttcggtggctttggtcgtacattgctgcaagcttgtgtcgtgatcaacaatctcgggacccttgttgtctacatgatcatcatcggagatgttttgtctgggacttcatcagatggggtgcattattcgggtgtcacggaagaatggtttggccaacattggtggaattcgcgctccaacttactgcttcttacaacgctccttgtttttgctcctcttatttcattcaagcgtgttgattcattgagatacacatcagctttgtcagtcgctttggctgttgtatttgtggtgatcactgctggaatagtcattgttaaggtcattaatggaagcattgggatgccccgcttactgcctaaacttattgatcaagcgtctttctggaagcttttcacaactgttccagtacttgttactgcctatatttgccatcacaatagtaagttctagctgttcattacttacacagtattgtgtcaaagaatatcgttagtaacaaccccctctgtgattaagcagatagataatgcaattttcctttttaatgtgatcttaatacccaaatcaagctgaggacgtttcctcaaaggctttttggtatacatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="-" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="46224" stop="42334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45924" g_stop="45505" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45504" i_stop="45267" i_length="238">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45266" g_stop="45114" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="573" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45113" i_stop="43009" i_length="2105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43008" g_stop="42634" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="948" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="-" ref_id="SGN-U328438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45924" e_stop="45505"/>
          <exon e_start="45266" e_stop="45114"/>
          <exon e_start="43008" e_stop="42634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCCAAATTTACCAGAATGACTTACTCCGACCGGAAACACCGTCGGAGCTATAAAACCGCCCCTCTTCTGCCTCAAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCGGTACTCTCTCTGGTTTCTTTTTGATCACTTTTTAATGTGTTTTTTTAAAAAATACATTTTATCTTTTAGTCGACTCTTTAATCTCTTCAATTTCAACTTTGCGTGACATGTTTAAGATCACGAGATTAAATGACATTTTGGTTCCCAGAGTGTTATCTCCATTTTGTGACCAGTTGCTAAATGTAGTAGCTCTGGAGTTATCTGTGTAGGCTAATGAAAGTGGTCTGTTTGATTGCAGGAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTGGTGAGCATTCGTACTAACTCATCTCTTCTTCCCAATGTTTCATAGTGTTATTCTCGTTTTATATCCTTACTATGAACTGTGACACGGATACTTGAAAAAAAAAAGGAAAGTAGTTTGATGTGCTGAACTTGCAAAGATGGAAATGAACTGTATCTGTAGTCACAAATATGGAATCTTTCTCTGCATTTGATGATTGTTATCTTCGAAATGTTTACATTTTATAGCTAATACCAAGTTAAACTGTTACCCTTGGAATTTCTGGAGTTCTCTATAATGCTGATATAACATAGCTAATCCCACTGTGAATCAACATGACACTACTAATTTACTCTTCATGCTAGTACTATCCCTGTTTCTCCCCACTTTCTTTCCCAAACAAACTTGTTCCGCATCCCAAAGTTTCCATGTATGTTTACGTTCCATTTATACATATGTCAAGTAAAACGGATTTGTGTATCTGGATTGGTATTTATTGGGTATTACTCGTAATGGTGTTTCCTCTTGAAAATATTTATAGCACACATTTGATACTGAATACCAATGAGACACCTTTAGCAATCAAAATGAAATTGGTTATAGAGTATCAGGTGTTATTTTATGCGTGTCCAACACATTCTAATGATACCACACTCTCCATTTAAAAAGTTGTTTGTCCATCTACAATATGACTAGATTATAAAATGAAATATTTGCTTAGCATTTGTTGGATCAATTTATTTATTTTTGAATGGTAAGAGAGTAGAAGAGGATGAACTTGTGAAGCGTAAATTGAGGCTCTTAAAACTTTCATAGTATTTAAAATTACAAATGCCTTCGGCGTAAGGTTAGTAGACAACAATTAGAAATAACCCTAATCTTACCTCATCAAAAAGTATAAGAAAAAAGAAACAACCCAAACTGTAAAAACAGGACAAGCATTTTAAGACAAAGAGAGTTCTGCTTAGGTTTTAATAATCATTTAACATAAATGAGCTGATCCTTACTGTATAAGAATTTGAACTGAGATACTTGCTGCTTTTCATTAGCGGCTCTTCTATCAGTCTATGACTACTTCCTGAAATTAAGGAAAGAAGTACAATTTATAGTACTAGAGTCAGATAAATTCAAAATAAGACGCGAAAACACCCGATCCCATTCCGACCGATGGTATCCAGGAAAATGTCATGTCAAAGGATCTGCAATATGAAGTAGCAATACTTTGAAGTTACGAAGATATGATAACGGACTGACTTTTTATTTAGATCCAAATTTTGTTGTAAATTCTGACAGAATAGAGGAGTTTTATTTTCTCCTGATAGAATTATGGTTATAAGTTAACAAAAAGTAGTGGGTCACATGGAATGGAAGTAGGGAGTAAGTTTCTATATCATGAATTTTGACAAATTAATTACAAATAGGTTCTCCTTTTTGATAAAGGCATTTCTCCTCTTTTTTTCATTCATGAAAAGATGTGTTAACGGATAAACTCTAATATGAGTTGAAGGATTTAGTTCCAATCTGTGAGTGTATTGGTTGTGAAATTCATCTTTAAGTTGATTATGGATGTGTGTATTACCTAAATGTGACTTCATGAGAATCAACAAATATGTTGTGGTAAAAATGATTTTAAGGGATATTTAGGGTGAGATATTACCTCATAGTGGAACATGCCAATTATGTATATGAGGTTAAGGGCTGTTGATGTGATGTGGTGGTTAACCGAATTATGACAATATGAAGTAGAAGGGCATCTTGTGTTTGGTTACACTTTAGCCAAGTTAGAACCATTTAAAGTACAATAATTTTGTGAAATTTTCAATGTACAATCTCTTCCACTATGCCCAGGTTCATAAGGTTATTAACTTATTATTGCATAATCACGCAGTCTAAATTCTTATGATGTGACATCACCTTAAATGAAGGAGGTGGTTCTCCTTGTCTATGGGATGAAACTCGGATTGTATTGCATGTAGTGTACAGTTTCTTATCGAAATCAGCCAGCAATACGATATTATTACACCTTCATTATATTTGTTTTCCTACTTTTCAGATGGTATACTTGCCTGTGAAGGCACTATCTGCAGTCAGTCACTAATATGGATTACTTTTTTTATTGTATTGGGCAGATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCTGTTGTATTTGTGGTGATCACTGCTGGAATAGTCATTGTTAAGGTCATTAATGGAAGCATTGGGATGCCCCGCTTACTGCCTAAACTTATTGATCAAGCGTCTTTCTGGAAGCTTTTCACAACTGTTCCAGTACTTGTTACTGCCTATATTTGCCATCACAATAGTAAGTTCTAGCTGTTCATTACTTACACAGTATTGTGTCAAAGAATATCGTTAGTAACAACCCCCTCTGTGATTAAGCAGATAGATAATGCAATTTTCCTTTTTAATGTGATCTTAATACCCAAATCAAGCTGAGGACGTTTCCTCAAAGGCTTTTTGGTATACATGCTTT</genome_strand>
        <mrna_strand>TTTCCCCCAAATTTACCAGAATGACTTACTCCGACCGGAAACACCGTCGGAGCTATAAAACCGCCCCTCTTCTGCCTCAAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCG..............................................................................................................................................................................................................................................GAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCTGTTGTATTTGTGGTGATCACTGCTGGAATAGTCATTGTTAAGGTCATTAATGGAAGCATTGGGATGCCCCGCTTACTGCCTAAACTTATTGATCAAGCGTCTTTCTGGAAGCTTTTCACAACTGTTCCAGTACTTGTTACTGCCTATATTTGCCATCACAATAGTAAGTTCTAGCTGTTCATTACTTACACAGTATTGTGTCAAAGAATATCGTTAGTAACAACCCCCTCTGTGATTAAGCAGATAGATAATGCAATTTTCCTTTTTAATGTGATCTTAATACCCAAATCAAGCTGAGGACGTTTCCTCAAAGGCTTTTTGGTATACATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315272" ref_strand="+" ref_description="SGN-U315272        Tomato 200607 #1 [38 ESTs aligned] arabidopsis/peptide: | Symbol: None | squalene monooxygenase, putative / squalene epoxidase, putative, similar to SP:O65404 (SE 1,1), SP:O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021 | chr1:21717507-21720955 REVERSE | Aliases: F9K23.3, F9K23_3(evalue: 0, score=736) genbank/nr: gi|62945915|gb|AAY22200.1| squalene monooxygenase [Datura innoxia] (evalue: 0, score=872)">
      <seq>atttagtatatgtggcttgttctgtttaattcgtaaaaaagtgtgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgtgacccaaaggtagaagtcccttcttgttttgttggtctggtactggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggctaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtgatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattaagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcataatttttggttgctagtcttcccttgtaatctttttccttttttagtttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtaaaaaaaaaaaaaaccttatcttttctctggacattcatttttttttccttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58911" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59211" g_stop="59676" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="578" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="753" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="922" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.754" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1141" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1417" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1418" r_stop="1696" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1697" r_stop="1998" r_length="302" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2056" polyA_stop="2088"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U315272" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1990</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59211" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCC--------TTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGACCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTACTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCTAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCATAATTTTTGGTTGCTAGTCTTCCCTTGTAATCTTTTTCCTTTTTTAGTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315271" ref_strand="+" ref_description="SGN-U315271        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | squalene monooxygenase, putative / squalene epoxidase, putative, similar to SP:O65404 (SE 1,1), SP:O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021 | chr1:21717507-21720955 REVERSE | Aliases: F9K23.3, F9K23_3(evalue: 0, score=734) genbank/nr: gi|62945915|gb|AAY22200.1| squalene monooxygenase [Datura innoxia] (evalue: 0, score=870)">
      <seq>gtaaaaaagtgtgctttgtgtctagaaatctctctgtattgacagcaaagcattcatcagatacagcctaataatactactctttctattttcatttttagatatatagagattcacgggcattgttagagaagcaacgtcgtcgtttctcttgctccgttcccgtctcccgtcctttttctgcattgtcgccggcgacaatggtggatttaggtctcttcggatctcttcttgtagtggtgttggggttcgttgcagttttctgttttttcattggtcgtaacaaaagtaaaaatgatggctcggcaactagcaccactacaactacgctgtataatggagagtccagatcaaaggatggaaacgaagacgttgatatcatcatcgtcggtgccggtgttgccggtgctgctcttgctcacactcttggcaaggaggggcgtcgtgtaaaagtaattgaaagagatttgacggagcctgatcgaattgttggagaactcctacaaccgggtggttatctcaaattgcaggagttgggattggaagattgtgttgagaaaattgatgctcaacgcgtttttgggtatgcccttttcaaggatggaaagagtacacgtctttcttatcccctggagaaatttcactctgatgtttctggaaggagcttccacaatgggcgtttcattcaaagaatgcgagagaaagctgcagctcttcccaatgtcaaactcgagcaaggcactgttacgtctctgcttgaagaaaaggggatcattagaggtgttcagtacaagactaaatccggtgaagagttgaaagcatatgcaccattaactgtagtatgtgatggttgtttctcgaatctgcgacgtaccctctgtgatccaaaggtagaagtcccttcttgttttgttggtctggtcctggagaactgtcagcttccacatgaaaatcacggacatgtcattttggctgatccgtcacctatcttgttctatcccataagcagtactgaagtccgctgtctggttgatgtacctggtcaaaaagtgccttctatttcgaatggtgaaatggccaaatatttgaaaagtgtagttgctccccaggtccctcctgagataaaagatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaagcctgtggcctccaccatcaatacattggctggtgccttgtataaggtattttgtgcttcacctgatcaagctaggaaggagatgcgtgaagcatgctttgattatttgagcctcggtggagtattctcagaaggaccagtatctttgctttctggcttaaaccctcgtccattgagtctcgtttgtcatttctttgctgtggctatctttggtgttggccgcttgctgcttcctttcccatcaccgaaacgtatatggattggagcccggctaatatcgagtgcatctgcaatcattttccctatcatcaaggcagaaggggtcagacagatgttcttccctgctactgttcccgcatattacaggaagccctcctgaagtgaggttgtaactgctataaacagaataaggctatgccattgtaccacctccatcagtattctggttgtgagtttcaagagtttagtccaactgttgcacaatttttggtttctagtcttcccttgtaatctttttcctttgttcccatgattgattacactattaactgcaaagtaaatataagttgtaaaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="58943" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59243" g_stop="59676" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59996" g_stop="60107" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="546" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60232" g_stop="60406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="721" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60643" g_stop="60811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="890" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61101" g_stop="61319" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1109" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61421" g_stop="61696" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1385" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62088" g_stop="62366" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1386" r_stop="1664" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62454" g_stop="62747" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1665" r_stop="1958" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1961" polyA_stop="1978"/>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U315271" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1958</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59243" e_stop="59676"/>
          <exon e_start="59996" e_stop="60107"/>
          <exon e_start="60232" e_stop="60406"/>
          <exon e_start="60643" e_stop="60811"/>
          <exon e_start="61101" e_stop="61319"/>
          <exon e_start="61421" e_stop="61696"/>
          <exon e_start="62088" e_stop="62366"/>
          <exon e_start="62454" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAGGTGTTGTTTCTATCTTTGTAATCCTTTTTTAAAAGTTATTGTTCAACTTTGGTCCTTTAACTATTTTTTTTATGTACATATGTGAGGAAACTGTATTTGTTTAGTGAGAAGTAATTAGGTTGATAAGTTGATGTGGTTATTGTTCATTGAAGACTTGAACTTGATTGTTAATTTGATGAAATCATAGAAATGAAAGATGCATTGATGATGAAAGCGTTTGGTGTCGCTGCAAATAATTTTATTGGAGTTCTTTGTTGATAATTCTCTATAAAAAAAGTTCTTTGTTGTGAGATTTATGATTATACATTTGGGACTACAGGAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAGGTAAAGTTCCTAAATGATGTGATTTGTGTCAATTCTGGTTAATTTACTCTCTTGAAGAGAAAAAAAAGGATGTTAGTCTGTCTGTTTTTCGCATTTCTCATGTTTGTATTTGTGTCTGCTGCAGATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAAGTATTCCTTCTTACTATTTTTTCTTTTTCCCTTGGCAGATCTATTTCTCTCTTTCTCTTATATGTTATGAAGTATTTGATCTTCAAATAATTTCCTGTTTGATCTTATAGTGAGGATTCATATTGTCGAGTCTTACTAGTTTGGATGGAAGCTTAGTTGATTGATTGAAATAGTTTCCTGTTGAATTATCTCTGCTTTGATTGACTAAATGCATATCGGCTTTGATTTTTTAACAGTGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAGGTAAGGGCGCTTATCTATATTTCTCTTGATTTTTGTTAAGATAAGAAGGATGATACTGGGTGATTAATTTTTTTCTGAGAAGGATCTTTTGTTTAAAAAGCTCGTCTGTGAAATCGTTTGCTTTTACTTACTGTATATCATCTTTTGCTTTTTTACTTACTGTGTGAGACAATAAGAATTAGTGTACCGAAGTTGTTTGAATGAACAAATATCTTTAAATGAACATCAACTTTGTTGTCCCCTCCTTATGTTTCTCTCAACACTCAGAATGACATGTAACATTGCACAGGTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAGGTAAAGAATTGTTGAAAAAGTTATCCTGAATGACATACCATGTCATTATAGTAGTATACATACTTATTATGTTCAATGAGATGTTTGTGTGGTTGTTCCAGGTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCGGTAGGTGTCAATCTTGCTTTTGCTCAAGTATTTACAATCTTACTCGTGTTCTTGTATTTTGACAATTTCATGTTGATTCAAATGCAGAGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</genome_strand>
        <mrna_strand>GTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG...............................................................................................................................................................................................................................................................................................................................GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG............................................................................................................................ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA............................................................................................................................................................................................................................................TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAG.................................................................................................................................................................................................................................................................................................GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG.....................................................................................................GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTGAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG.......................................................................................AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335064" ref_strand="+" ref_description="SGN-U335064        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | squalene monooxygenase, putative / squalene epoxidase, putative, similar to SP:O65404 (SE 1,1), SP:O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021 | chr1:21717507-21720955 REVERSE | Aliases: F9K23.3, F9K23_3(evalue: 4e-38, score=155) genbank/nr: gi|62945915|gb|AAY22200.1| squalene monooxygenase [Datura innoxia] (evalue: 7e-41, score=170)">
      <seq>agatgcattcattgctgcaattgataaaggaaacatcaggacaatgcccaaccgaagcatgccagctgctcctcatcctactcctggtgctcttctcatgggtgatgcattcaacatgcgccaccccttgactggtggaggaatgactgtagcattatctgatatcgttgtattgcgtgatcttctcaaacctcttcgtaatttgaatgatgcatctactctttgcagatatctggagtcattttacaccttgcgtaaggtaaaaatcttttgaaatccttccttgcataagcaacatatttggttgctgtaagcaccacattttctactttgagaatccttagtgaagtaaaaactctatgttgactagtgagtaattaaggatctggaaccacaaaactgacattcctttgatgatttcaccagctatcaatctaccaataacaatgtaatgtaaaaaggcttggttcattacgatgttttaggactttttgaactcactcaattctcctataatttgccttctacataaaaaaaaaaagggagagcaaaagaggatgactcaattctcctgcagcactttcagacttaactagaatattattacctttatagatattgacttgttctgctcgcatatttatctgcagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="61138" stop="62390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61438" g_stop="62090" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U335064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61438" e_stop="62090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCT</genome_strand>
        <mrna_strand>AGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTAATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326502" ref_strand="+" ref_description="SGN-U326502        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:18450988-18453182 REVERSE | Aliases: T16K5.70(evalue: 2e-94, score=342) genbank/nr: gi|18408931|ref|NP_566924.1| expressed protein [Arabidopsis thaliana] gi|11285664|pir||T46038 hypothetical protein T16K5.70 - Arabidopsis thaliana gi|6723417|emb|CAB66910.1| hypothetical protein [Arabidopsis thaliana] gi|21593048|gb|AAM64997.1| unknown [Arabidopsis thaliana](evalue: 2e-92, score=342)">
      <seq>aatgatgtcaaggaggcctatcaatccatctcgacgtgtaacagacaatggagcttcttccttagaaggctcaattcggtcaaagacacggtctcccccatatttaacaattggacttattattgtggtatcatttcttctcatagggtatttttaccgtgacacaggtacttttgccagtattaaaggagctatcagtagagtggaaggggattttttatgtactgtagaggttcaaaaggccatttctgttttgaacaaagcatatggtgatagcatgcataaggtgctgcatgttggtcctgatacttgctcggtagttgctaaattgttagaagaggaagataccgaagcttggggtatagaaccatatgatatagaggatgcaggtcatttctgcaagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcgttctctcttgtgatcatctcagatgcgttggattacttgtctccaaagtatcttaataggactcttcccgaactggcgagggtgtcatctgatggactcgttattttcacaggttatccacgccaccataaagttaagtttgcagagaagtccagatttggggggctggctaaattgaggagctcaacgtggtgggtgcgatattttgttcaaacaagtttagaggaaaatgaaattgccatcaagaaattcgagcaagctgcttcgaagaagtcttatgttcctagctgccaaatttttcacttgaaatcttaccgttgatataaatactcaaaatttatacacagtaggactcacgcagagctcgtggatgatggtcaagatatgttgtgacaactttcaagtttcagctgtgttgataagttgtttagaatagcagttgtctccttgaaaattattgagtatgccatcatcttcattagtgtagtcttgttagatatatggaagtatggcagtttgttgatttattgcaaaatggggaattaatttgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="76136" stop="81548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76436" g_stop="76562" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76702" g_stop="76741" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="167" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77392" g_stop="77433" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="209" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78498" g_stop="78872" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="584" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80270" g_stop="80325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="640" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80326" i_stop="80860" i_length="535">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80861" g_stop="81248" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="1027" r_length="387" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U326502" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76436" e_stop="76562"/>
          <exon e_start="76702" e_stop="76741"/>
          <exon e_start="77392" e_stop="77433"/>
          <exon e_start="78498" e_stop="78872"/>
          <exon e_start="80270" e_stop="80325"/>
          <exon e_start="80861" e_stop="81248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTGGTACTTATTCCCGGATTCTGATGCTATTTGTTATTTAACTGTTATCATTCTGGATGACAGTGGATAAACTTTGGAATATTACTAGCCTCTAGTCATTTAACAGTAATTGTAACTCAATTTTTCCTTTTGGATATTCCAGGTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAGGTTTGTATCTGAATCCTTGGTATTTTATGAATTATTTTTATCTTCGGAAATATAGTGAGATGCCCCCCAAAAATGATGCAAAAAGAAAACAAAATATTTTGGCTGATTGCTCAACACTGGAGTCTGGAGCTGTCTGGTAGCCTATAATTTCTAGTTTAAAATATATACTAACAGCTACGCTCTTTAGTTGACTTGGAGGACTCCTATAGATTCTTTATTTAGAGTAAATTGTATATTGAAAAGAACGATAATACTTGTGCATGAAAGTCTTCCCTTCTCGAGGAAAGAAGATATCGGCATCCACATATGCACAAGTAAAAGATGGCTCATGTGTATTGTTTTCGATATATTTTTTATTTTTTTATCTGCAAACAAATAATGGTCTGTCTTCCCTTTAAACATTTTAGCAAAGGAAAACTGGCCCTACCTCATGTTTTGATGAATGTTTTCTAAATAAAAATCTCAAATGAATCTCTGCTCTCAGTAATGGTCATGCAGATGCAGGTGATTTAATTACACGTCGTGTTTCCTTCTTTCAACTTGAACATTTTGTTCTGCCTAAGTATTGTTCTTTACTTCATTCTTTGTGCTTCTGAGTCTTGTTCCTTACTTTAGTCTGACACTGATAGAGGGATTATCATCGGTTGTAGGTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAGGTAATTACTCGTGCATTATTCTAGAGGATTTGAGTTTTGACGTATTTATATATCAAATGCCACATGAATTATGTGATTTAATTGAAGTACTGAGACTTTTCTTTTAATTGCTTAGTGCTAATGGTTCTAACTATGGACTCATGATCACCTCATATTTGTATCAAGAACTTCAGTTTGGTCCTTAATGATAATCACTGTCACTTCTCTGCCTGGGGCTTTACTCTAACAATCATTATAATAATCTATTATAAGAAGGCTCGTGTAGTAGGAACCATCTAAAATTACTTAAAACAAATGTCTGTTGAGACATAATAAAACCATCTAACGTATCTCTCTAACAGCTCAAGCCTTTGGCAAGTTGGTCAACATGATATCTGAGCAGACTAGAGGTCCTGGGTTCAAATCTCGCAGCCATCCAAAAAGAAAAAAACGTGTTTGGTCCATGAAAACGAATAGGGCCAACAAGTGAGGGTGTGTATTGAGACATTATGAAATCAAGTCACTTAGTTGCTACAACTTAAGCTTTTAGTTTTAGATGAGATGGTCTCACACTTCAGCAATGTCTTTGGAGATGACATGCTGTATTCTTGTGTTCCACAAGGAAACCTATGTGCATTGTTATCATGCAGTCAGTCTGTATACCAACTTCAATAAACTAATATCAACCCAGAAACTTCACGTCTTTGATATCTGTTCTCTTATTGATTTGCTGAATAATTCTTTATTCTGGTGAGCATCTGGAACATCTGTAAACTTTCCCCCCATACTTTATACATCATTTACTCATAAAGGCATAGAGGAGGTAACAAGATTAGTAATTTTCATTTGTCACTCTAGGTGGGTGGAGTGACTGCATTATACCTATCAAGAATCTTGATATAGTCTATACACAGAGCTACTGACTTCCATTCTTTATATTAGAAGATACCTGAATTCTATTGCTTTTGTTTAGTTTGGGTAATACGGTATGTCAGTTTATTTGCCTTGACATTTTTGAAGATTAAGTTACTGCTATTTTTACATTAGAGTTGACTTAGGATCTACCACCTGTTTTACCTCTGCAGGGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAGGTAAGAAGAGTTTGTATTGGTTGTTGTGTTTGTATGATTGCCAGTCCAAAATGGAAGTTTATTTTGCATTCATTGTACTGTCCGAGCTAAGCTGCTTCCTATCCTCACTTCCTGTCAATCTGTATTTTGGTGTTTGCCCCTTTGGGTTACAGACATGAGTAGGGAGTATTTATCTCAATCCTAGATAGATGCCTTTTTACCATGTGAAACATATTTTTTTTTATCTTCAGTACTTGGTCATACTAGCACATTTTTCTCGTTGATCAACAAATCTATTTAGAAACTTGATCATTTGTTGCCTTAATTTCAATTTCCTTCCACCTGACGTATCTTATACAGTATGCTTTCAATAGGTTTCAAACCCCCCCTCTTTACTAGGTCCAAAATTGCCCTATTCAGTTTTCTCCTTTGAAGTTGGATTTAAGTTGACTGGGAGAAGTTCTTGTTATCACCATCCTTTCTGCGGCGGAGGATAAAGTACATCACCACTTCTCGTTAGTTACCTAAATATATCAAGAAAAGCTGAATATCTGTAAGATTTTATAGCAGGGACATTAAGGACAAATGTTGGATTTCACACACTAACACACACACGGAAAAGAAGAGGACATCCGTGGTTTTTTTTTTTTTTTAATAAATGGCATTAAACTGCTATCTCATATATGAACATAACAGATGCAGAAGTGAGGAGATTTTGCAATTGGGGGAAATTAGATGACCAGGGTCTATTTATAACTGAAAGAGAGAACCTGTATTTGTAGAACTTAGAAGAATTTAGCAGCAACAGCATGGCTTTTCCCTTTCCTTTTACTGGAAAGGAACAACTTCATTTCTGAATTAATGCAACAGTTGTTTGTTACTGTGAAATAGGATACTTGAGAATTCGTCTCCTTTCCTGTTTATCAGTGATAATATTTTTAAAGAATGATATGGTGATAGTTGGATCTAGTTTTGATGATACCTCACACATACATATCCATCTCCAGTACATGAATGGTTCACAATTGATTCCAAATAGATGCAATGTAGCGTACTTTCAATTCAGCTAGTGTGCTTTTATTCTTGTATAACTTTTGGTCAGTTGACCTCTATAGAGTAACATTTTGTATTTTGGTTGCGTTTGGCGAGTCTGATCACCTTGCTTTCATAGAGCTGTTAACTCCGTCAGTTTTCTCCTTTAAGATTTGACCATGTCACTAAATTACTCCATGCATGGGCTTTCTAAGGAGTTAGAAATGCCTTTAGGGTATTTTGCTACCTTCATCCTTTATACTCCATGATTGCTCAATATAAGACATTGGCTGCATTCTGCATATAAAGACAAGTTAATATGGGAAACCTTGTAATCCAGAGAATTCTTCTGGTGTTAATCTGATGTTAATATCTGATAATTGCAGGTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTGGTAAGTGACCAGTCCTGCATCGTATAAATTCTTATATATTTTTGTTTCACTGTATGGACATTTGATCTCTCATAAATTTTAGGGATGAGGAGCCAAGACTTTAATCCTAGTTTGGAGCCTTCGACCCTTATATGACGTCTTATGGTTATCTATTCTTGCTCTTTTAGTTTAGTTGATCTGAATTCTTAATGGTGTCTTGAAGAAATTGAGTTTATGTCAGCAGTTCATTTGAAACCTCATTATAACATCACCATTCATGCAGTAGCATATCGCTGCTAGTCAAAAGTCAGATTTTCTAGTTTCCGGTGAATAGGAAAGTGTTTATATACATTTCTTGAAGAATGACTTCATGCTGCAATGGTGCTAGCCCAATAAATTGGCAGCCAAAGTTGTATGGTGAAATGTTTTAGTGAATGCCCTGCTCATGATATCTTTCTCTCCGTCTATTTTCCACAGTAACATTGACTTAAATGAACCTTCAATTTTGAAACCTGATGCCATCTAATTCCACCTTTCCTTTATGTTCTCTCCAAAGGCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGATATAAATACTCAAAATTTATACACAGTAGGACTCACGCAGAGCTCGTGGATGATGGTCAAGATATGTTGTGACAACTTTCAAGTTTCAGCTGTGTTGATAAGTTGTTTAGAATAGCAGTTGTCTCCTTGAAAAATTATTGAGTATGCCATCATCTTCATTAGTGTAGTCTTGTTAGATATATGGAGTTATGGCAGTTTGTTGATTTATTGCAAAAATGGGAATTAAATTGCTGTT</genome_strand>
        <mrna_strand>AATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG...........................................................................................................................................GTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGATATAAATACTCAAAATTTATACACAGTAGGACTCACGCAGAGCTCGTGGATGATGGTCAAGATATGTTGTGACAACTTTCAAGTTTCAGCTGTGTTGATAAGTTGTTTAGAATAGCAGTTGTCTCCTTG-AAAATTATTGAGTATGCCATCATCTTCATTAGTGTAGTCTTGTTAGATATATGGAAGTATGGCAGTTTGTTGATTTATTGCAAAATGGGGAATTAATTTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338363" ref_strand="+" ref_description="SGN-U338363        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to unknown protein (emb CAB66910.1) | chr5:26354895-26356963 REVERSE | Aliases: K22J17.2, K22J17_2(evalue: 2e-56, score=215) genbank/nr: gi|21593192|gb|AAM65141.1| unknown [Arabidopsis thaliana](evalue: 6e-55, score=217)">
      <seq>ctgatacttgctcggtagttgctaaattgttagaagaggaagataccgaagcttggggtatagaaccatatgatatagaggatgcaggtcatttctgcgagaaactcgtgcataagggcattgttcgtgtggctgacataaaatttcctctcccatatcgtgcaaaatcattctctcttgtgatcatctcagatgcgttggattacttgtctccaaagtatcttaataggactcttcccgaactggcgagggtgtcatctgatggactcgttattttcacaggttatccacgccaccataaagttaagtttgcagagaagtccacatttggggggctggctaaattgatgagctcaacgtggtgggtgcgatattttgttctgactagtttataggacaatgaagttgtcatcaagaaattctagcaagctgcttcgaagaagacttatgttcctagctgccagatttttcgcttgagatcttaccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128L09-LCPAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0128L09.1" temp_strand="+" temp_description="C04HBa0128L09.1  CU915722.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0128L09 sequenced_by:sanger upload_account_name:uk">
        <position start="78291" stop="81313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78591" g_stop="78872" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80270" g_stop="80325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="338" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80326" i_stop="80860" i_length="535">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80861" g_stop="81013" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128L09.1" gen_strand="+" ref_id="SGN-U338363" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128L09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78591" e_stop="78872"/>
          <exon e_start="80270" e_stop="80325"/>
          <exon e_start="80861" e_stop="81013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAGGTAAGAAGAGTTTGTATTGGTTGTTGTGTTTGTATGATTGCCAGTCCAAAATGGAAGTTTATTTTGCATTCATTGTACTGTCCGAGCTAAGCTGCTTCCTATCCTCACTTCCTGTCAATCTGTATTTTGGTGTTTGCCCCTTTGGGTTACAGACATGAGTAGGGAGTATTTATCTCAATCCTAGATAGATGCCTTTTTACCATGTGAAACATATTTTTTTTTATCTTCAGTACTTGGTCATACTAGCACATTTTTCTCGTTGATCAACAAATCTATTTAGAAACTTGATCATTTGTTGCCTTAATTTCAATTTCCTTCCACCTGACGTATCTTATACAGTATGCTTTCAATAGGTTTCAAACCCCCCCTCTTTACTAGGTCCAAAATTGCCCTATTCAGTTTTCTCCTTTGAAGTTGGATTTAAGTTGACTGGGAGAAGTTCTTGTTATCACCATCCTTTCTGCGGCGGAGGATAAAGTACATCACCACTTCTCGTTAGTTACCTAAATATATCAAGAAAAGCTGAATATCTGTAAGATTTTATAGCAGGGACATTAAGGACAAATGTTGGATTTCACACACTAACACACACACGGAAAAGAAGAGGACATCCGTGGTTTTTTTTTTTTTTTAATAAATGGCATTAAACTGCTATCTCATATATGAACATAACAGATGCAGAAGTGAGGAGATTTTGCAATTGGGGGAAATTAGATGACCAGGGTCTATTTATAACTGAAAGAGAGAACCTGTATTTGTAGAACTTAGAAGAATTTAGCAGCAACAGCATGGCTTTTCCCTTTCCTTTTACTGGAAAGGAACAACTTCATTTCTGAATTAATGCAACAGTTGTTTGTTACTGTGAAATAGGATACTTGAGAATTCGTCTCCTTTCCTGTTTATCAGTGATAATATTTTTAAAGAATGATATGGTGATAGTTGGATCTAGTTTTGATGATACCTCACACATACATATCCATCTCCAGTACATGAATGGTTCACAATTGATTCCAAATAGATGCAATGTAGCGTACTTTCAATTCAGCTAGTGTGCTTTTATTCTTGTATAACTTTTGGTCAGTTGACCTCTATAGAGTAACATTTTGTATTTTGGTTGCGTTTGGCGAGTCTGATCACCTTGCTTTCATAGAGCTGTTAACTCCGTCAGTTTTCTCCTTTAAGATTTGACCATGTCACTAAATTACTCCATGCATGGGCTTTCTAAGGAGTTAGAAATGCCTTTAGGGTATTTTGCTACCTTCATCCTTTATACTCCATGATTGCTCAATATAAGACATTGGCTGCATTCTGCATATAAAGACAAGTTAATATGGGAAACCTTGTAATCCAGAGAATTCTTCTGGTGTTAATCTGATGTTAATATCTGATAATTGCAGGTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTGGTAAGTGACCAGTCCTGCATCGTATAAATTCTTATATATTTTTGTTTCACTGTATGGACATTTGATCTCTCATAAATTTTAGGGATGAGGAGCCAAGACTTTAATCCTAGTTTGGAGCCTTCGACCCTTATATGACGTCTTATGGTTATCTATTCTTGCTCTTTTAGTTTAGTTGATCTGAATTCTTAATGGTGTCTTGAAGAAATTGAGTTTATGTCAGCAGTTCATTTGAAACCTCATTATAACATCACCATTCATGCAGTAGCATATCGCTGCTAGTCAAAAGTCAGATTTTCTAGTTTCCGGTGAATAGGAAAGTGTTTATATACATTTCTTGAAGAATGACTTCATGCTGCAATGGTGCTAGCCCAATAAATTGGCAGCCAAAGTTGTATGGTGAAATGTTTTAGTGAATGCCCTGCTCATGATATCTTTCTCTCCGTCTATTTTCCACAGTAACATTGACTTAAATGAACCTTCAATTTTGAAACCTGATGCCATCTAATTCCACCTTTCCTTTATGTTCTCTCCAAAGGCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGA</genome_strand>
        <mrna_strand>CTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCGAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCATTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCACATTTGGGGGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATTGATGAGCTCAACGTGGTGGGTGCGATATTTTGTTCTGACTAGTTTATAGGACAATGAAGTTGTCATCAAGAAATTCTAGCAAGCTGCTTCGAAGAAGACTTATGTTCCTAGCTGCCAGATTTTTCGCTTGAGATCTTACCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3813" PGL_stop="3477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3813" e_stop="3477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="3813" e_stop="3477" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3813" stop="3477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACGATGTCATAATCAATTACCGCCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGATACGTGACACTCCGATCCCCTACATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  A  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  D  T  *  H  S  D  P  L  H  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  R  C  H  N  Q  L  P  P  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  S  P  L  V  S  I  R  D  T  P  I  P  Y  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  D  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  V  L  L  C  R  Y  V  T  L  R  S  P  T  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4986" PGL_stop="4579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4986" e_stop="4579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="4986" e_stop="4579" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4986" stop="4579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAACTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGAGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGGAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGATAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAATTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGCATCAGATGGGCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGGCCTCTT</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  T  S  C  *  S  F  V  I  I  G  P  V  V  K  R  G  N  V  P  I  S  N  G  T  F  M  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  G  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  I  T  *  L  I  I  S  G  V  G  W  G  G  S  S  S  F  C  T  C  S  I  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  A  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  L  H  A  D  H  L  S  L  *  A  Q  *  S  N  E  E  T  C  L  F  P  M  E  H  S  C  G  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  E  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  *  P  D  *  S  S  L  G  *  V  G  V  V  V  P  H  S  A  L  A  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  H  Q  M  G  *  V  F  V  L  F  L  *  R  T  S  S  H  G  L   </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  E  L  T  E  N  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  R  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  D  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  H  L  L  N  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  L  S  S  S  S  R  G  R  P  P  T  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="4621" PGL_stop="5174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4621" e_stop="5174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="4621" e_stop="5174" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4621" stop="5174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAATTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTATCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTCCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCTCGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAGTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTCCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATTATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  T  T  T  P  T  Y  P  R  D  D  Q  S  G  Y  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  S  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  P  H  E  C  S  I  G  N  R  H  V  S  S  F  D  Y  W  A  Y  N  D  K  *  S  A  *  S  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  P  R  K  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  I  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  I  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  P  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  N  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  V  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  L  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  L  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  P  A  *  M  F  H  W  K  *  A  R  F  L  V  *  L  L  G  L  *  *  Q  M  I  S  M  K  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  S  K  E  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4622" stop="5173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDARAVTPPPTEEVVREGEEGEIEQVQNEELPPQPTPEMINQVIAYLSGLSDQGQAPPVFPAPTPPVSEVQHAATMAPRMNVPLEIGTFPRLTTGPIMTNDQHEVFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWALF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="5248" PGL_stop="6692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5248" e_stop="5434"/>
            <exon e_start="6179" e_stop="6692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="5248" e_stop="5434" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5435" i_stop="6178" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="6179" e_stop="6692" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5248" stop="5434"/>
              <exon start="6179" stop="6692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCTACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGTGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTTTGTGAGTTTCTAGATGTGTTCCCTACAGATATTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGAGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  V  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  I  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  L  *  V  S  R  C  V  P  Y  R  Y  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  *  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  L  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  W  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  C  E  F  L  D  V  F  P  T  D  I  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  Y  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  H  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  F  V  S  F  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5249" stop="5434"/>
                    <exon start="6179" stop="6691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATLLCFSPQERIRRFVKGLRSELWISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVCEFLDVFPTDIPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDESFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="7261" PGL_stop="5906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7261" e_stop="5906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="7261" e_stop="5906" e_length="1356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7261" stop="6552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6744" stop="6086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6675" stop="5918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6448" stop="5906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6272" stop="5942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGATAACAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTCAAAAGTCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAAACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAATATCTGTAGGGAACACATCTAGAAACTCACAAACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAACATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAATTGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  I  T  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  F  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  Y  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  S  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  L  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  N  I  C  R  E  H  I  *  K  L  T  N  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  C  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  H  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  N  C  R  A  R  V  K  Q  Y  K  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  C  L  R </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  Q  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  H  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  S  K  V  P  F  I  K  L  M  N  A  A  G  A  F  V  K  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  L  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  I  S  V  G  N  T  S  R  N  S  Q  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  N  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  S  R  P  L  A  N  A  E  D  T  Y  E  I  V  E  P  G  S  N  N  T  K  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  D  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  F  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  T  H  T  *  R  T  W  H  K  A  F  S  P  S  I  F  P  I  P  F  S  N  A  P  H  V  P  S  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  Q  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  N  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  Y  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  Y  L  *  G  T  H  L  E  T  H  K  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  M  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  T  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  Q  D  H  *  Q  M  R  K  I  H  M  K  L  *  S  Q  G  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L  M  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7096" stop="6761"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTLRELGIKLFLPQYFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKSPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6537" stop="6292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGISVGNTSRNSQTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6141" stop="5908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKFTKQDLYTFSTTTDSPTGVETRIGMSSNSQCKSRPLANAEDTYEIVEPGSNNTKAMQSQTERLPVMTASDVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="8741" PGL_stop="8565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8741" e_stop="8565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="8741" e_stop="8565" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8741" stop="8565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="14196" PGL_stop="14832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14196" e_stop="14832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="14196" e_stop="14832" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14196" stop="14832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGTGAATTTAAGTGGTGCAAAAGGGGTACTATCAAAAACCCAATTTAGGGTACTGTATGTTATATAATTGGGGTTAGGAATTAGTGCTTTTTATTGGCATTTTTAGCTAACATATTTCAGAATATCTGAAAAGTCTTGTTGGAGTCTATTCTTTATCTTGATACTTGTGGGGCTTTGAGTTGTTTTTTGATTCTAAGCTTCAGCTGAGACAATTGGTATATTTCCTTAACAAGAACCTTTTTTTTCTCTTTAACAAACCCCATTTCTCATCTCCATATTGAATTTGCTGGAAGATAAAAAGAACAGGTTAATGTGAAGCTTGTAACTTTCTCTTTGCTGTTTTTAATAGTAGTAAACAAAAGGAATCTGCTTTCTTTTCTATTAGTGTGAGCTGTTATTTCACCAATGCTTTCATTTCTCTACTTTATGCTCTGAAAGTTTCATACTTTCTTGTCTCTGAGAATTAAACTACTTTTTATTTTCCATGTTATTAGACTAGGCTTGATCCTAGGGTTCTTGAAAACAAACAAGGGGGGTTAAAGATTTTATGCCTAGTACTTTGGATTTTTTATTTTTTTACCTTTGTTGTGTGTCTATAGGATGCTGCATTGAGAGATTTCTTTTGCTTTAAAGCT</gDNA_template>
            <first_frame> L  V  N  L  S  G  A  K  G  V  L  S  K  T  Q  F  R  V  L  Y  V  I  *  L  G  L  G  I  S  A  F  Y  W  H  F  *  L  T  Y  F  R  I  S  E  K  S  C  W  S  L  F  F  I  L  I  L  V  G  L  *  V  V  F  *  F  *  A  S  A  E  T  I  G  I  F  P  *  Q  E  P  F  F  S  L  *  Q  T  P  F  L  I  S  I  L  N  L  L  E  D  K  K  N  R  L  M  *  S  L  *  L  S  L  C  C  F  *  *  *  *  T  K  G  I  C  F  L  F  Y  *  C  E  L  L  F  H  Q  C  F  H  F  S  T  L  C  S  E  S  F  I  L  S  C  L  *  E  L  N  Y  F  L  F  S  M  L  L  D  *  A  *  S  *  G  S  *  K  Q  T  R  G  V  K  D  F  M  P  S  T  L  D  F  L  F  F  Y  L  C  C  V  S  I  G  C  C  I  E  R  F  L  L  L  *  S  </first_frame>
            <second_frame>  W  *  I  *  V  V  Q  K  G  Y  Y  Q  K  P  N  L  G  Y  C  M  L  Y  N  W  G  *  E  L  V  L  F  I  G  I  F  S  *  H  I  S  E  Y  L  K  S  L  V  G  V  Y  S  L  S  *  Y  L  W  G  F  E  L  F  F  D  S  K  L  Q  L  R  Q  L  V  Y  F  L  N  K  N  L  F  F  L  F  N  K  P  H  F  S  S  P  Y  *  I  C  W  K  I  K  R  T  G  *  C  E  A  C  N  F  L  F  A  V  F  N  S  S  K  Q  K  E  S  A  F  F  S  I  S  V  S  C  Y  F  T  N  A  F  I  S  L  L  Y  A  L  K  V  S  Y  F  L  V  S  E  N  *  T  T  F  Y  F  P  C  Y  *  T  R  L  D  P  R  V  L  E  N  K  Q  G  G  L  K  I  L  C  L  V  L  W  I  F  Y  F  F  T  F  V  V  C  L  *  D  A  A  L  R  D  F  F  C  F  K  A </second_frame>
            <third_frame>   G  E  F  K  W  C  K  R  G  T  I  K  N  P  I  *  G  T  V  C  Y  I  I  G  V  R  N  *  C  F  L  L  A  F  L  A  N  I  F  Q  N  I  *  K  V  L  L  E  S  I  L  Y  L  D  T  C  G  A  L  S  C  F  L  I  L  S  F  S  *  D  N  W  Y  I  S  L  T  R  T  F  F  F  S  L  T  N  P  I  S  H  L  H  I  E  F  A  G  R  *  K  E  Q  V  N  V  K  L  V  T  F  S  L  L  F  L  I  V  V  N  K  R  N  L  L  S  F  L  L  V  *  A  V  I  S  P  M  L  S  F  L  Y  F  M  L  *  K  F  H  T  F  L  S  L  R  I  K  L  L  F  I  F  H  V  I  R  L  G  L  I  L  G  F  L  K  T  N  K  G  G  *  R  F  Y  A  *  Y  F  G  F  F  I  F  L  P  L  L  C  V  Y  R  M  L  H  *  E  I  S  F  A  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="23656" PGL_stop="18386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23656" e_stop="23627"/>
            <exon e_start="18714" e_stop="18386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.767"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.767">
            <gDNA_exon_boundary e_start="23656" e_stop="23627" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23626" i_stop="18715" i_length="4912"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="18714" e_stop="18386" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23656" stop="23627"/>
              <exon start="18714" stop="18386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTCGTTTACTTTTATTTATTTATTA : AAAACACAATTACATTGATGATCATTTCAGATATGACAAGACTTTACAAGAAAATCACCACTGTTTGTTTCTCTCAGAAATCCTCAAACAAATTCTTACAGGTTGCACAAACATAATTGAAACAAGACATCTTTTACCCCAAATGATGTTTCTTGTTTTCAATGTACAGTTCATTTCTTACCAATCTAAAATAATCTCTTCTGCTAAAACTCGAAGAACACAAAATGAGTTAGGAGCTAATATCCTATACAACTCCAGAAAAAAGTAAAAGTAAATTTTCACTATATCTTCTGTCCAAGTATGCAAAACACATTTTGCAGTCAATTGGG</gDNA_template>
            <first_frame> F  F  S  F  T  F  I  Y  L  L  :  K  T  Q  L  H  *  *  S  F  Q  I  *  Q  D  F  T  R  K  S  P  L  F  V  S  L  R  N  P  Q  T  N  S  Y  R  L  H  K  H  N  *  N  K  T  S  F  T  P  N  D  V  S  C  F  Q  C  T  V  H  F  L  P  I  *  N  N  L  F  C  *  N  S  K  N  T  K  *  V  R  S  *  Y  P  I  Q  L  Q  K  K  V  K  V  N  F  H  Y  I  F  C  P  S  M  Q  N  T  F  C  S  Q  L   </first_frame>
            <second_frame>  F  F  R  L  L  L  F  I  Y  * :   K  H  N  Y  I  D  D  H  F  R  Y  D  K  T  L  Q  E  N  H  H  C  L  F  L  S  E  I  L  K  Q  I  L  T  G  C  T  N  I  I  E  T  R  H  L  L  P  Q  M  M  F  L  V  F  N  V  Q  F  I  S  Y  Q  S  K  I  I  S  S  A  K  T  R  R  T  Q  N  E  L  G  A  N  I  L  Y  N  S  R  K  K  *  K  *  I  F  T  I  S  S  V  Q  V  C  K  T  H  F  A  V  N  W  </second_frame>
            <third_frame>   F  F  V  Y  F  Y  L  F  I   : K  N  T  I  T  L  M  I  I  S  D  M  T  R  L  Y  K  K  I  T  T  V  C  F  S  Q  K  S  S  N  K  F  L  Q  V  A  Q  T  *  L  K  Q  D  I  F  Y  P  K  *  C  F  L  F  S  M  Y  S  S  F  L  T  N  L  K  *  S  L  L  L  K  L  E  E  H  K  M  S  *  E  L  I  S  Y  T  T  P  E  K  S  K  S  K  F  S  L  Y  L  L  S  K  Y  A  K  H  I  L  Q  S  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18713" stop="18447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHNYIDDHFRYDKTLQENHHCLFLSEILKQILTGCTNIIETRHLLPQMMFLVFNVQFISYQSKIISSAKTRRTQNELGANILYNSRKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="29563" PGL_stop="27100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29563" e_stop="29536"/>
            <exon e_start="29427" e_stop="29119"/>
            <exon e_start="29021" e_stop="28731"/>
            <exon e_start="28635" e_stop="28522"/>
            <exon e_start="28414" e_stop="27100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29563" e_stop="29536" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.971">
            <gDNA_intron_boundary i_start="29535" i_stop="29428" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29427" e_stop="29119" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29118" i_stop="29022" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29021" e_stop="28731" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.426">
            <gDNA_intron_boundary i_start="28730" i_stop="28636" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28635" e_stop="28522" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.859" acc_prob="0.965">
            <gDNA_intron_boundary i_start="28521" i_stop="28415" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="28414" e_stop="27100" e_length="1315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29563" stop="29536"/>
              <exon start="29427" stop="29119"/>
              <exon start="29021" stop="28731"/>
              <exon start="28635" stop="28522"/>
              <exon start="28414" stop="27100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGATCCCTATGTGTAATGAAAAAGAG : GTTTATCAGCAATCCATTGGTGCTGTGTGTTGTTTGGAGTGGCCTAAATCAAGATTGTTGATTCAAGTTCTTGATGATTCAGATGATCCAGTTACTCAGACATTGATCAATGAAGAGGTTCGTAAGTGGCAGAAGGAAGGTGCCAATATCATATACAGGCATAGAGTGATCAGAGAGGGTTATAAAGCTGGTAATCTTAAGTCAGCTATGAATTGCAGCTATGTCAAAGACTACGAATTTGTTACCATTTTCGATGCTGATTTCCAGCCTATGCCTGATTTTCTTAAAAGAACTGTCCCTTATTTCAAG : GATAATGATGACATAGGATTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAATCTACTTACAAGATTGCAGCACATTAATTTGGCTTTTCATTTTGAAGTGGAGCAGCAGGTTAATGGTATTTTTCTGAATTTCTTTGGCTTTAATGGGACTGCTGGAGTATGGAGGATTAAGGCATTAGAAGAATCTGGTGGTTGGTTGGAGCGGACGACCGTTGAAGATATGGACATTGCAGTCAGGGCTCATCTACATGGGTGGAAATTTATCTTTCTCAATGATGTAGAG : TGTCAGTGTGAGTTACCGGAATCATATGAAGCGTATAGGAAGCAACAACATAGATGGCATTCGGGGCCAATGCAGTTGTTTCGTCTCTGTTTACCTGCCATTATTAAATCAAAG : ATAAGCATATGGAAGAAGGGCAATTTGATATTTCTTTTCTTCCTTTTGAGGAAGTTGGTATTGCCATTTTATTCATTCACTCTGTTTTGCATAATCCTCCCAATGACAATGTTCATTCCTGAGGCGACGCTCCCATCATGGGTCGTCTCTTACGTCCCTGCCACCATGTCATTTCTTAATATACTTCCGGCGCCTAAATCTTTCCCATTCATCGTGCCATACCTTCTATTCGAGAACACCATGTCCGTTACCAAGTTTAATGCCATGGTCTCTGGCCTCTTCCAACTAGGAAGTGCATACGAATGGGTAGTCACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTGCTTCGTTAGCTGAGGAAAAACCAAAACACCAGCGAGTTGCTTCAGAAGAATGGACAGCGACCAAGAAATCAGGACGTTCCTCTGAGGGCGATCTTACTTTGTTGGTCGATGGGAAACCAAAACACCAACGAGGTGTTTCCGTGCCTGATTTAGAGGAATTAAGAGAGGAAATTAAAGAGAAGGAGAAAAAAGCTTCAAGAAAGAAGAAGCACAACAGAATATACACAAAAGAATTGGCTTTAGCTTTCTTGCTGTTGACAGCTTCACTAAGGAGCCTACTATCAGCTCAAGGAATCCACTTTTACTTCTTGCTGTTTCAAGGTATATCATTCCTGCTCGTTGGCCTAGACTTGATCGGTGAACAGGTCGATTAAATCTTTCATAGCTTAGGGATAAATATTAGTTGGAAAGAATTAGATGCTGAACCTGACCTTTGGTACATTCCTGTAAATGAGAAGAGTAAGCAATGGGGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGTTACATTAGAGCAGATGGTTGAGCAAATGCAGCATCTATGAATAGAGAAAACCATTAAGAAATGGTGAATAGTGTTCATTTTAAGCAAAACCCCCCTCCCACTGTGTCAATGTAATTTCTTTATCTTCTGAATTCTTTTTTTTTTCTTCTTCTTTCTTTTGGCTATATTCTTTTGTAAGAAGAATTTGTCTTTGAAACATTAAACAAGGAATTTAGTGGAAGTTGAATAGAGTATAGCAAGCACGCAGCTTTTCTTCACACATAAATCTCCCTCTGGTTCATTTCTTGTTTGGAGAATCTCTCAGGAGGAGTATTATGTAACCAAAATATTGTACATTTTTTCATAACTAGGAGTATTATAATGTCTTTTGAGGTGCATATTGTTCCTCCAAAGTACATGTTGTCCAAGTTTTTTGACATTACACAA</gDNA_template>
            <first_frame> S  D  P  Y  V  *  *  K  R   : G  L  S  A  I  H  W  C  C  V  L  F  G  V  A  *  I  K  I  V  D  S  S  S  *  *  F  R  *  S  S  Y  S  D  I  D  Q  *  R  G  S  *  V  A  E  G  R  C  Q  Y  H  I  Q  A  *  S  D  Q  R  G  L  *  S  W  *  S  *  V  S  Y  E  L  Q  L  C  Q  R  L  R  I  C  Y  H  F  R  C  *  F  P  A  Y  A  *  F  S  *  K  N  C  P  L  F  Q   : G  *  *  *  H  R  I  G  S  S  K  M  V  F  C  E  Q  G  *  K  S  T  Y  K  I  A  A  H  *  F  G  F  S  F  *  S  G  A  A  G  *  W  Y  F  S  E  F  L  W  L  *  W  D  C  W  S  M  E  D  *  G  I  R  R  I  W  W  L  V  G  A  D  D  R  *  R  Y  G  H  C  S  Q  G  S  S  T  W  V  E  I  Y  L  S  Q  *  C  R   : V  S  V  *  V  T  G  I  I  *  S  V  *  E  A  T  T  *  M  A  F  G  A  N  A  V  V  S  S  L  F  T  C  H  Y  *  I  K   : D  K  H  M  E  E  G  Q  F  D  I  S  F  L  P  F  E  E  V  G  I  A  I  L  F  I  H  S  V  L  H  N  P  P  N  D  N  V  H  S  *  G  D  A  P  I  M  G  R  L  L  R  P  C  H  H  V  I  S  *  Y  T  S  G  A  *  I  F  P  I  H  R  A  I  P  S  I  R  E  H  H  V  R  Y  Q  V  *  C  H  G  L  W  P  L  P  T  R  K  C  I  R  M  G  S  H  Q  E  I  R  T  F  L  *  G  R  S  C  F  V  S  *  G  K  T  K  T  P  A  S  C  F  R  R  M  D  S  D  Q  E  I  R  T  F  L  *  G  R  S  Y  F  V  G  R  W  E  T  K  T  P  T  R  C  F  R  A  *  F  R  G  I  K  R  G  N  *  R  E  G  E  K  S  F  K  K  E  E  A  Q  Q  N  I  H  K  R  I  G  F  S  F  L  A  V  D  S  F  T  K  E  P  T  I  S  S  R  N  P  L  L  L  L  A  V  S  R  Y  I  I  P  A  R  W  P  R  L  D  R  *  T  G  R  L  N  L  S  *  L  R  D  K  Y  *  L  E  R  I  R  C  *  T  *  P  L  V  H  S  C  K  *  E  E  *  A  M  G  G  N  C  G  D  L  S  P  L  R  K  P  L  E  T  R  K  R  *  *  S  K  V  T  L  E  Q  M  V  E  Q  M  Q  H  L  *  I  E  K  T  I  K  K  W  *  I  V  F  I  L  S  K  T  P  L  P  L  C  Q  C  N  F  F  I  F  *  I  L  F  F  F  F  F  F  L  L  A  I  F  F  C  K  K  N  L  S  L  K  H  *  T  R  N  L  V  E  V  E  *  S  I  A  S  T  Q  L  F  F  T  H  K  S  P  S  G  S  F  L  V  W  R  I  S  Q  E  E  Y  Y  V  T  K  I  L  Y  I  F  S  *  L  G  V  L  *  C  L  L  R  C  I  L  F  L  Q  S  T  C  C  P  S  F  L  T  L  H   </first_frame>
            <second_frame>  Q  I  P  M  C  N  E  K  E  :  V  Y  Q  Q  S  I  G  A  V  C  C  L  E  W  P  K  S  R  L  L  I  Q  V  L  D  D  S  D  D  P  V  T  Q  T  L  I  N  E  E  V  R  K  W  Q  K  E  G  A  N  I  I  Y  R  H  R  V  I  R  E  G  Y  K  A  G  N  L  K  S  A  M  N  C  S  Y  V  K  D  Y  E  F  V  T  I  F  D  A  D  F  Q  P  M  P  D  F  L  K  R  T  V  P  Y  F  K  :  D  N  D  D  I  G  L  V  Q  A  R  W  S  F  V  N  K  D  E  N  L  L  T  R  L  Q  H  I  N  L  A  F  H  F  E  V  E  Q  Q  V  N  G  I  F  L  N  F  F  G  F  N  G  T  A  G  V  W  R  I  K  A  L  E  E  S  G  G  W  L  E  R  T  T  V  E  D  M  D  I  A  V  R  A  H  L  H  G  W  K  F  I  F  L  N  D  V  E  :  C  Q  C  E  L  P  E  S  Y  E  A  Y  R  K  Q  Q  H  R  W  H  S  G  P  M  Q  L  F  R  L  C  L  P  A  I  I  K  S  K  :  I  S  I  W  K  K  G  N  L  I  F  L  F  F  L  L  R  K  L  V  L  P  F  Y  S  F  T  L  F  C  I  I  L  P  M  T  M  F  I  P  E  A  T  L  P  S  W  V  V  S  Y  V  P  A  T  M  S  F  L  N  I  L  P  A  P  K  S  F  P  F  I  V  P  Y  L  L  F  E  N  T  M  S  V  T  K  F  N  A  M  V  S  G  L  F  Q  L  G  S  A  Y  E  W  V  V  T  K  K  S  G  R  S  S  E  G  D  L  A  S  L  A  E  E  K  P  K  H  Q  R  V  A  S  E  E  W  T  A  T  K  K  S  G  R  S  S  E  G  D  L  T  L  L  V  D  G  K  P  K  H  Q  R  G  V  S  V  P  D  L  E  E  L  R  E  E  I  K  E  K  E  K  K  A  S  R  K  K  K  H  N  R  I  Y  T  K  E  L  A  L  A  F  L  L  L  T  A  S  L  R  S  L  L  S  A  Q  G  I  H  F  Y  F  L  L  F  Q  G  I  S  F  L  L  V  G  L  D  L  I  G  E  Q  V  D  *  I  F  H  S  L  G  I  N  I  S  W  K  E  L  D  A  E  P  D  L  W  Y  I  P  V  N  E  K  S  K  Q  W  G  E  I  V  E  T  Y  R  L  S  A  N  R  W  K  P  V  K  D  D  E  A  K  L  H  *  S  R  W  L  S  K  C  S  I  Y  E  *  R  K  P  L  R  N  G  E  *  C  S  F  *  A  K  P  P  S  H  C  V  N  V  I  S  L  S  S  E  F  F  F  F  S  S  S  F  F  W  L  Y  S  F  V  R  R  I  C  L  *  N  I  K  Q  G  I  *  W  K  L  N  R  V  *  Q  A  R  S  F  S  S  H  I  N  L  P  L  V  H  F  L  F  G  E  S  L  R  R  S  I  M  *  P  K  Y  C  T  F  F  H  N  *  E  Y  Y  N  V  F  *  G  A  Y  C  S  S  K  V  H  V  V  Q  V  F  *  H  Y  T  </second_frame>
            <third_frame>   R  S  L  C  V  M  K  K  R :   F  I  S  N  P  L  V  L  C  V  V  W  S  G  L  N  Q  D  C  *  F  K  F  L  M  I  Q  M  I  Q  L  L  R  H  *  S  M  K  R  F  V  S  G  R  R  K  V  P  I  S  Y  T  G  I  E  *  S  E  R  V  I  K  L  V  I  L  S  Q  L  *  I  A  A  M  S  K  T  T  N  L  L  P  F  S  M  L  I  S  S  L  C  L  I  F  L  K  E  L  S  L  I  S  R :   I  M  M  T  *  D  W  F  K  Q  D  G  L  L  *  T  R  M  K  I  Y  L  Q  D  C  S  T  L  I  W  L  F  I  L  K  W  S  S  R  L  M  V  F  F  *  I  S  L  A  L  M  G  L  L  E  Y  G  G  L  R  H  *  K  N  L  V  V  G  W  S  G  R  P  L  K  I  W  T  L  Q  S  G  L  I  Y  M  G  G  N  L  S  F  S  M  M  *  S :   V  S  V  S  Y  R  N  H  M  K  R  I  G  S  N  N  I  D  G  I  R  G  Q  C  S  C  F  V  S  V  Y  L  P  L  L  N  Q  R :   *  A  Y  G  R  R  A  I  *  Y  F  F  S  S  F  *  G  S  W  Y  C  H  F  I  H  S  L  C  F  A  *  S  S  Q  *  Q  C  S  F  L  R  R  R  S  H  H  G  S  S  L  T  S  L  P  P  C  H  F  L  I  Y  F  R  R  L  N  L  S  H  S  S  C  H  T  F  Y  S  R  T  P  C  P  L  P  S  L  M  P  W  S  L  A  S  S  N  *  E  V  H  T  N  G  *  S  P  R  N  Q  D  V  P  L  R  A  I  L  L  R  *  L  R  K  N  Q  N  T  S  E  L  L  Q  K  N  G  Q  R  P  R  N  Q  D  V  P  L  R  A  I  L  L  C  W  S  M  G  N  Q  N  T  N  E  V  F  P  C  L  I  *  R  N  *  E  R  K  L  K  R  R  R  K  K  L  Q  E  R  R  S  T  T  E  Y  T  Q  K  N  W  L  *  L  S  C  C  *  Q  L  H  *  G  A  Y  Y  Q  L  K  E  S  T  F  T  S  C  C  F  K  V  Y  H  S  C  S  L  A  *  T  *  S  V  N  R  S  I  K  S  F  I  A  *  G  *  I  L  V  G  K  N  *  M  L  N  L  T  F  G  T  F  L  *  M  R  R  V  S  N  G  G  K  L  W  R  L  I  A  S  P  Q  T  V  G  N  P  *  K  M  M  K  Q  S  Y  I  R  A  D  G  *  A  N  A  A  S  M  N  R  E  N  H  *  E  M  V  N  S  V  H  F  K  Q  N  P  P  P  T  V  S  M  *  F  L  Y  L  L  N  S  F  F  F  L  L  L  S  F  G  Y  I  L  L  *  E  E  F  V  F  E  T  L  N  K  E  F  S  G  S  *  I  E  Y  S  K  H  A  A  F  L  H  T  *  I  S  L  W  F  I  S  C  L  E  N  L  S  G  G  V  L  C  N  Q  N  I  V  H  F  F  I  T  R  S  I  I  M  S  F  E  V  H  I  V  P  P  K  Y  M  L  S  K  F  F  D  I  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29562" stop="29536"/>
                    <exon start="29427" stop="29119"/>
                    <exon start="29021" stop="28731"/>
                    <exon start="28635" stop="28522"/>
                    <exon start="28414" stop="27692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPMCNEKEVYQQSIGAVCCLEWPKSRLLIQVLDDSDDPVTQTLINEEVRKWQKEGANIIYRHRVIREGYKAGNLKSAMNCSYVKDYEFVTIFDADFQPMPDFLKRTVPYFKDNDDIGLVQARWSFVNKDENLLTRLQHINLAFHFEVEQQVNGIFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIKSKISIWKKGNLIFLFFLLRKLVLPFYSFTLFCIILPMTMFIPEATLPSWVVSYVPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLASLAEEKPKHQRVASEEWTATKKSGRSSEGDLTLLVDGKPKHQRGVSVPDLEELREEIKEKEKKASRKKKHNRIYTKELALAFLLLTASLRSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="30619" PGL_stop="29854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30619" e_stop="29854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="30619" e_stop="29854" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30619" stop="29854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCTCTCTCTCTCTCTCTCTCTCTACATTCAATATACTGTTTTGCAAATTTTCATATTCCCTTTATAAACCTCTGTGTGTGTGTGAGTGAGTGTGTGCTTTCTGTGTCTGTCTCTTCTTATCTCTTCTCTTTCTGGACTCTGAAATGAGTTCAAGAATTCAAAAATCCAACACCCTTTAGTTTCTTTTCATCTGGGTTTGCTAGCATTGTGTTGATTTGAGCTGAAAAACAGATAAAGATTCAATCTTTACATCTTTAAAGTGATTTTGCCATCTGGGTCTGTTTCAAGAATGGCACCTTCATTTACCTGGTGGGGTAAAGAAACTCATAGGGGTACACCAGTAGTGGTAAAAATGGAGAATCCAAACAATTGGTCAATGGTTGAGCTTGAAGGACCATCAGAAGATGATTTCTTGTTACCAAACGATGATGTTTCTTCAATGTCTCCTTATAAACGTGAAAAAGTTCGAAACAAGAATGCTAAACAGCTTACATGGGTTCTTCTTCTTAAGGCTCATAAAGCTGCTGGTTGTTTAACTTCTATAGCATCAGCATTGTTCAGCTTAGCCTCCGTCGTGCGCCGCCGTGTCGCTGCCGGTCGGACTGATTCTACAGACAACAGTTCCACTGAGAATCCGGCTGTCAAGAACCGGTTCTATACTTGCATAAAGATCTTTCTTTGGTTGTCGGTAATCTTGTTAGGGTTTGAAATAACAGCTTATTTCAAAGGCTGGTACTTTAGTGCACCAGATCTTCAATTACAG</gDNA_template>
            <first_frame> G  P  L  S  L  S  L  S  L  H  S  I  Y  C  F  A  N  F  H  I  P  F  I  N  L  C  V  C  V  S  E  C  V  L  S  V  S  V  S  S  Y  L  F  S  F  W  T  L  K  *  V  Q  E  F  K  N  P  T  P  F  S  F  F  S  S  G  F  A  S  I  V  L  I  *  A  E  K  Q  I  K  I  Q  S  L  H  L  *  S  D  F  A  I  W  V  C  F  K  N  G  T  F  I  Y  L  V  G  *  R  N  S  *  G  Y  T  S  S  G  K  N  G  E  S  K  Q  L  V  N  G  *  A  *  R  T  I  R  R  *  F  L  V  T  K  R  *  C  F  F  N  V  S  L  *  T  *  K  S  S  K  Q  E  C  *  T  A  Y  M  G  S  S  S  *  G  S  *  S  C  W  L  F  N  F  Y  S  I  S  I  V  Q  L  S  L  R  R  A  P  P  C  R  C  R  S  D  *  F  Y  R  Q  Q  F  H  *  E  S  G  C  Q  E  P  V  L  Y  L  H  K  D  L  S  L  V  V  G  N  L  V  R  V  *  N  N  S  L  F  Q  R  L  V  L  *  C  T  R  S  S  I  T  </first_frame>
            <second_frame>  V  L  S  L  S  L  S  L  Y  I  Q  Y  T  V  L  Q  I  F  I  F  P  L  *  T  S  V  C  V  *  V  S  V  C  F  L  C  L  S  L  L  I  S  S  L  S  G  L  *  N  E  F  K  N  S  K  I  Q  H  P  L  V  S  F  H  L  G  L  L  A  L  C  *  F  E  L  K  N  R  *  R  F  N  L  Y  I  F  K  V  I  L  P  S  G  S  V  S  R  M  A  P  S  F  T  W  W  G  K  E  T  H  R  G  T  P  V  V  V  K  M  E  N  P  N  N  W  S  M  V  E  L  E  G  P  S  E  D  D  F  L  L  P  N  D  D  V  S  S  M  S  P  Y  K  R  E  K  V  R  N  K  N  A  K  Q  L  T  W  V  L  L  L  K  A  H  K  A  A  G  C  L  T  S  I  A  S  A  L  F  S  L  A  S  V  V  R  R  R  V  A  A  G  R  T  D  S  T  D  N  S  S  T  E  N  P  A  V  K  N  R  F  Y  T  C  I  K  I  F  L  W  L  S  V  I  L  L  G  F  E  I  T  A  Y  F  K  G  W  Y  F  S  A  P  D  L  Q  L  Q </second_frame>
            <third_frame>   S  S  L  S  L  S  L  S  T  F  N  I  L  F  C  K  F  S  Y  S  L  Y  K  P  L  C  V  C  E  *  V  C  A  F  C  V  C  L  F  L  S  L  L  F  L  D  S  E  M  S  S  R  I  Q  K  S  N  T  L  *  F  L  F  I  W  V  C  *  H  C  V  D  L  S  *  K  T  D  K  D  S  I  F  T  S  L  K  *  F  C  H  L  G  L  F  Q  E  W  H  L  H  L  P  G  G  V  K  K  L  I  G  V  H  Q  *  W  *  K  W  R  I  Q  T  I  G  Q  W  L  S  L  K  D  H  Q  K  M  I  S  C  Y  Q  T  M  M  F  L  Q  C  L  L  I  N  V  K  K  F  E  T  R  M  L  N  S  L  H  G  F  F  F  L  R  L  I  K  L  L  V  V  *  L  L  *  H  Q  H  C  S  A  *  P  P  S  C  A  A  V  S  L  P  V  G  L  I  L  Q  T  T  V  P  L  R  I  R  L  S  R  T  G  S  I  L  A  *  R  S  F  F  G  C  R  *  S  C  *  G  L  K  *  Q  L  I  S  K  A  G  T  L  V  H  Q  I  F  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30381" stop="29854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFNLYIFKVILPSGSVSRMAPSFTWWGKETHRGTPVVVKMENPNNWSMVELEGPSEDDFLLPNDDVSSMSPYKREKVRNKNAKQLTWVLLLKAHKAAGCLTSIASALFSLASVVRRRVAAGRTDSTDNSSTENPAVKNRFYTCIKIFLWLSVILLGFEITAYFKGWYFSAPDLQLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="36040" PGL_stop="36486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36040" e_stop="36486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="36040" e_stop="36486" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36040" stop="36486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAATACACACAAAAAAATAGTTTAATCTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTCATGTATGAAAAAAATTAAAATATACCTTGAATTTTGATAGAAGAATCATATATACCCCTAAATAATTCCTTTTTTAAAAATTAGAAGTAATAAACATAAATTTAAAACTACTTTTTTAACTTCCGTTAAAGGAAGGGTATATGTGAGCCATTTTGTAACAGCAGAGGTATATGTGAGCCGTTTGTATAACGATAAGCGCATATATGAGCCACTTTTATAACGAGGGGTATATCATCTCCAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  I  H  T  K  K  *  F  N  L  L  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  S  C  M  K  K  I  K  I  Y  L  E  F  *  *  K  N  H  I  Y  P  *  I  I  P  F  L  K  I  R  S  N  K  H  K  F  K  T  T  F  L  T  S  V  K  G  R  V  Y  V  S  H  F  V  T  A  E  V  Y  V  S  R  L  Y  N  D  K  R  I  Y  E  P  L  L  *  R  G  V  Y  H  L  Q  M  T  K  L  R  G  I  S  N  P  F  P  F </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  *  Y  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  H  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  L  F  *  K  L  E  V  I  N  I  N  L  K  L  L  F  *  L  P  L  K  E  G  Y  M  *  A  I  L  *  Q  Q  R  Y  M  *  A  V  C  I  T  I  S  A  Y  M  S  H  F  Y  N  E  G  Y  I  I  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  N  T  H  K  K  I  V  *  S  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  I  L  I  E  E  S  Y  I  P  L  N  N  S  F  F  K  N  *  K  *  *  T  *  I  *  N  Y  F  F  N  F  R  *  R  K  G  I  C  E  P  F  C  N  S  R  G  I  C  E  P  F  V  *  R  *  A  H  I  *  A  T  F  I  T  R  G  I  S  S  P  N  D  K  V  E  G  Y  I  K  P  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128L09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="45924" PGL_stop="42634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45924" e_stop="45505"/>
            <exon e_start="45266" e_stop="45114"/>
            <exon e_start="43008" e_stop="42634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45924" e_stop="45505" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45504" i_stop="45267" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45266" e_stop="45114" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.957">
            <gDNA_intron_boundary i_start="45113" i_stop="43009" i_length="2105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43008" e_stop="42634" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45924" stop="45505"/>
              <exon start="45266" stop="45114"/>
              <exon start="43008" stop="42634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCCCAAATTTACCAGAATGACTTACTCCGACCGGAAACACCGTCGGAGCTATAAAACCGCCCCTCTTCTGCCTCAAAAGGATGATGCTTTCAGTCACTCCGAGGCCGGATTCGATGGAGCTTCCTTTTCCGGAGCCGTCTTCAACCTGTCAACTACAATTGTCGGCGCCGGAATCATGGCTCTTCCGGCTACGCTCAAGCAACTTGGTGCAATTCCAGGTCTTATCGTTATCATACTTGCTGCTATACTGACAGAAAAGTCGATTGAGATGTTACTGAGGTTCACCAGAGCTTCCAAATGCTCCTCCTACTCTGGCCTCGCTGGCGATGCGTTCGGTGGCTTTGGTCGTACATTGCTGCAAGCTTGTGTCGTGATCAACAATCTCGGGACCCTTGTTGTCTACATGATCATCATCG : GAGATGTTTTGTCTGGGACTTCATCAGATGGGGTGCATTATTCGGGTGTCACGGAAGAATGGTTTGGCCAACATTGGTGGAATTCGCGCTCCAACTTACTGCTTCTTACAACGCTCCTTGTTTTTGCTCCTCTTATTTCATTCAAGCGTGTTG : ATTCATTGAGATACACATCAGCTTTGTCAGTCGCTTTGGCTGTTGTATTTGTGGTGATCACTGCTGGAATAGTCATTGTTAAGGTCATTAATGGAAGCATTGGGATGCCCCGCTTACTGCCTAAACTTATTGATCAAGCGTCTTTCTGGAAGCTTTTCACAACTGTTCCAGTACTTGTTACTGCCTATATTTGCCATCACAATAGTAAGTTCTAGCTGTTCATTACTTACACAGTATTGTGTCAAAGAATATCGTTAGTAACAACCCCCTCTGTGATTAAGCAGATAGATAATGCAATTTTCCTTTTTAATGTGATCTTAATACCCAAATCAAGCTGAGGACGTTTCCTCAAAGGCTTTTTGGTATACATGCTTT</gDNA_template>
            <first_frame> F  P  P  N  L  P  E  *  L  T  P  T  G  N  T  V  G  A  I  K  P  P  L  F  C  L  K  R  M  M  L  S  V  T  P  R  P  D  S  M  E  L  P  F  P  E  P  S  S  T  C  Q  L  Q  L  S  A  P  E  S  W  L  F  R  L  R  S  S  N  L  V  Q  F  Q  V  L  S  L  S  Y  L  L  L  Y  *  Q  K  S  R  L  R  C  Y  *  G  S  P  E  L  P  N  A  P  P  T  L  A  S  L  A  M  R  S  V  A  L  V  V  H  C  C  K  L  V  S  *  S  T  I  S  G  P  L  L  S  T  *  S  S  S  :  E  M  F  C  L  G  L  H  Q  M  G  C  I  I  R  V  S  R  K  N  G  L  A  N  I  G  G  I  R  A  P  T  Y  C  F  L  Q  R  S  L  F  L  L  L  L  F  H  S  S  V  L  :  I  H  *  D  T  H  Q  L  C  Q  S  L  W  L  L  Y  L  W  *  S  L  L  E  *  S  L  L  R  S  L  M  E  A  L  G  C  P  A  Y  C  L  N  L  L  I  K  R  L  S  G  S  F  S  Q  L  F  Q  Y  L  L  L  P  I  F  A  I  T  I  V  S  S  S  C  S  L  L  T  Q  Y  C  V  K  E  Y  R  *  *  Q  P  P  L  *  L  S  R  *  I  M  Q  F  S  F  L  M  *  S  *  Y  P  N  Q  A  E  D  V  S  S  K  A  F  W  Y  T  C  F </first_frame>
            <second_frame>  F  P  Q  I  Y  Q  N  D  L  L  R  P  E  T  P  S  E  L  *  N  R  P  S  S  A  S  K  G  *  C  F  Q  S  L  R  G  R  I  R  W  S  F  L  F  R  S  R  L  Q  P  V  N  Y  N  C  R  R  R  N  H  G  S  S  G  Y  A  Q  A  T  W  C  N  S  R  S  Y  R  Y  H  T  C  C  Y  T  D  R  K  V  D  *  D  V  T  E  V  H  Q  S  F  Q  M  L  L  L  L  W  P  R  W  R  C  V  R  W  L  W  S  Y  I  A  A  S  L  C  R  D  Q  Q  S  R  D  P  C  C  L  H  D  H  H  R :   R  C  F  V  W  D  F  I  R  W  G  A  L  F  G  C  H  G  R  M  V  W  P  T  L  V  E  F  A  L  Q  L  T  A  S  Y  N  A  P  C  F  C  S  S  Y  F  I  Q  A  C  * :   F  I  E  I  H  I  S  F  V  S  R  F  G  C  C  I  C  G  D  H  C  W  N  S  H  C  *  G  H  *  W  K  H  W  D  A  P  L  T  A  *  T  Y  *  S  S  V  F  L  E  A  F  H  N  C  S  S  T  C  Y  C  L  Y  L  P  S  Q  *  *  V  L  A  V  H  Y  L  H  S  I  V  S  K  N  I  V  S  N  N  P  L  C  D  *  A  D  R  *  C  N  F  P  F  *  C  D  L  N  T  Q  I  K  L  R  T  F  P  Q  R  L  F  G  I  H  A   </second_frame>
            <third_frame>   S  P  K  F  T  R  M  T  Y  S  D  R  K  H  R  R  S  Y  K  T  A  P  L  L  P  Q  K  D  D  A  F  S  H  S  E  A  G  F  D  G  A  S  F  S  G  A  V  F  N  L  S  T  T  I  V  G  A  G  I  M  A  L  P  A  T  L  K  Q  L  G  A  I  P  G  L  I  V  I  I  L  A  A  I  L  T  E  K  S  I  E  M  L  L  R  F  T  R  A  S  K  C  S  S  Y  S  G  L  A  G  D  A  F  G  G  F  G  R  T  L  L  Q  A  C  V  V  I  N  N  L  G  T  L  V  V  Y  M  I  I  I   : G  D  V  L  S  G  T  S  S  D  G  V  H  Y  S  G  V  T  E  E  W  F  G  Q  H  W  W  N  S  R  S  N  L  L  L  L  T  T  L  L  V  F  A  P  L  I  S  F  K  R  V   : D  S  L  R  Y  T  S  A  L  S  V  A  L  A  V  V  F  V  V  I  T  A  G  I  V  I  V  K  V  I  N  G  S  I  G  M  P  R  L  L  P  K  L  I  D  Q  A  S  F  W  K  L  F  T  T  V  P  V  L  V  T  A  Y  I  C  H  H  N  S  K  F  *  L  F  I  T  Y  T  V  L  C  Q  R  I  S  L  V  T  T  P  S  V  I  K  Q  I  D  N  A  I  F  L  F  N  V  I  L  I  P  K  S  S  *  G  R  F  L  K  G  F  L  V  Y  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45922" stop="45505"/>
                    <exon start="45266" stop="45114"/>
                    <exon start="43008" stop="42794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKFTRMTYSDRKHRRSYKTAPLLPQKDDAFSHSEAGFDGASFSGAVFNLSTTIVGAGIMALPATLKQLGAIPGLIVIILAAILTEKSIEMLLRFTRASKCSSYSGLAGDAFGGFGRTLLQACVVINNLGTLVVYMIIIGDVLSGTSSDGVHYSGVTEEWFGQHWWNSRSNLLLLTTLLVFAPLISFKRVDSLRYTSALSVALAVVFVVITAGIVIVKVINGSIGMPRLLPKLIDQASFWKLFTTVPVLVTAYICHHNSKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="59211" PGL_stop="62747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59211" e_stop="59676"/>
            <exon e_start="59996" e_stop="60107"/>
            <exon e_start="60232" e_stop="60406"/>
            <exon e_start="60643" e_stop="60811"/>
            <exon e_start="61101" e_stop="61319"/>
            <exon e_start="61421" e_stop="61696"/>
            <exon e_start="62088" e_stop="62366"/>
            <exon e_start="62454" e_stop="62747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59211" e_stop="59676" e_length="466"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59677" i_stop="59995" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59996" e_stop="60107" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60108" i_stop="60231" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60232" e_stop="60406" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60407" i_stop="60642" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60643" e_stop="60811" e_length="169"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.754">
            <gDNA_intron_boundary i_start="60812" i_stop="61100" i_length="289"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61101" e_stop="61319" e_length="219"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61320" i_stop="61420" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61421" e_stop="61696" e_length="276"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61697" i_stop="62087" i_length="391"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62088" e_stop="62366" e_length="279"/>
          </exon>
          <intron i_serial="7" don_prob="0.928" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62367" i_stop="62453" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62454" e_stop="62747" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59211" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59243" stop="59676"/>
              <exon start="59996" stop="60107"/>
              <exon start="60232" stop="60406"/>
              <exon start="60643" stop="60811"/>
              <exon start="61101" stop="61319"/>
              <exon start="61421" stop="61696"/>
              <exon start="62088" stop="62366"/>
              <exon start="62454" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAGTATATGTGGCTTGTTCTGTTTAATTCGTAAAAAAGTGTGCTTTGTGTCTAGAAATCTCTCTGTATTGACAGCAAAGCATTCATCAGATACAGCCTAATAATACTACTCTTTCTATTTTCATTTTTAGATATATAGAGATTCACGGGCATTGTTAGAGAAGCAACGTCGTCGTTTCTCTTGCTCCGTTCCCGTCTCCCGTCCTTTTTCTGCATTGTCGCCGGCGACAATGGTGGATTTAGGTCTCTTCGGATCTCTTCTTGTAGTGGTGTTGGGGTTCGTTGCAGTTTTCTGTTTTTTCATTGGTCGTAACAAAAGTAAAAATGATGGCTCGGCAACTAGCACCACTACAACTACGCTGTATAATGGAGAGTCCAGATCAAAGGATGGAAACGAAGACGTTGATATCATCATCGTCGGTGCCGGTGTTGCCGGTGCTGCTCTTGCTCACACTCTTGGCAAG : GAGGGGCGTCGTGTAAAAGTAATTGAAAGAGATTTGACGGAGCCTGATCGAATTGTTGGAGAACTCCTACAACCGGGTGGTTATCTCAAATTGCAGGAGTTGGGATTGGAAG : ATTGTGTTGAGAAAATTGATGCTCAACGCGTTTTTGGGTATGCCCTTTTCAAGGATGGAAAGAGTACACGTCTTTCTTATCCCCTGGAGAAATTTCACTCTGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAAAGAATGCGAGAGAAAGCTGCAGCTCTTCCCAA : TGTCAAACTCGAGCAAGGCACTGTTACGTCTCTGCTTGAAGAAAAGGGGATCATTAGAGGTGTTCAGTACAAGACTAAATCCGGTGAAGAGTTGAAAGCATATGCACCATTAACTGTAGTATGTGATGGTTGTTTCTCGAATCTGCGACGTACCCTCTGTGATCCAAAG : GTAGAAGTCCCTTCTTGTTTTGTTGGTCTGGTCCTGGAGAACTGTCAGCTTCCACATGAAAATCACGGACATGTCATTTTGGCTGATCCGTCACCTATCTTGTTCTATCCCATAAGCAGTACTGAAGTCCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCTTCTATTTCGAATGGTGAAATGGCCAAATATTTGAAAAGTGTAGTTGCTCCCCAG : GTCCCTCCTGAGATAAAAGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAG : CCTGTGGCCTCCACCATCAATACATTGGCTGGTGCCTTGTATAAGGTATTTTGTGCTTCACCTGATCAAGCTAGGAAGGAGATGCGTGAAGCATGCTTTGATTATTTGAGCCTCGGTGGAGTATTCTCAGAAGGACCAGTATCTTTGCTTTCTGGCTTAAACCCTCGTCCATTAAGTCTCGTTTGTCATTTCTTTGCTGTGGCTATCTTTGGTGTTGGCCGCTTGCTGCTTCCTTTCCCATCACCGAAACGTATATGGATTGGAGCCCGGCTAATATCG : AGTGCATCTGCAATCATTTTCCCTATCATCAAGGCAGAAGGGGTCAGACAGATGTTCTTCCCTGCTACTGTTCCCGCATATTACAGGAAGCCCTCCTGAAGTGAGGTTGTAACTGCTATAAACAGAATAAGGCTATGCCATTGTACCACCTCCATCAGTATTCTGGTTGTGAGTTTCAAGAGTTTAGTCCAACTGTTGCACAATTTTTGGTTTCTAGTCTTCCCTTGTAATCTTTTTCCTTTGTTCCCATGATTGATTACACTATTAACTGCAAAGTAAATATAAGTTGTAAAA</gDNA_template>
            <first_frame> I  *  Y  M  W  L  V  L  F  N  S  *  K  S  V  L  C  V  *  K  S  L  C  I  D  S  K  A  F  I  R  Y  S  L  I  I  L  L  F  L  F  S  F  L  D  I  *  R  F  T  G  I  V  R  E  A  T  S  S  F  L  L  L  R  S  R  L  P  S  F  F  C  I  V  A  G  D  N  G  G  F  R  S  L  R  I  S  S  C  S  G  V  G  V  R  C  S  F  L  F  F  H  W  S  *  Q  K  *  K  *  W  L  G  N  *  H  H  Y  N  Y  A  V  *  W  R  V  Q  I  K  G  W  K  R  R  R  *  Y  H  H  R  R  C  R  C  C  R  C  C  S  C  S  H  S  W  Q   : G  G  A  S  C  K  S  N  *  K  R  F  D  G  A  *  S  N  C  W  R  T  P  T  T  G  W  L  S  Q  I  A  G  V  G  I  G  R :   L  C  *  E  N  *  C  S  T  R  F  W  V  C  P  F  Q  G  W  K  E  Y  T  S  F  L  S  P  G  E  I  S  L  *  C  F  W  K  E  L  P  Q  W  A  F  H  S  K  N  A  R  E  S  C  S  S  S  Q  :  C  Q  T  R  A  R  H  C  Y  V  S  A  *  R  K  G  D  H  *  R  C  S  V  Q  D  *  I  R  *  R  V  E  S  I  C  T  I  N  C  S  M  *  W  L  F  L  E  S  A  T  Y  P  L  *  S  K   : G  R  S  P  F  L  F  C  W  S  G  P  G  E  L  S  A  S  T  *  K  S  R  T  C  H  F  G  *  S  V  T  Y  L  V  L  S  H  K  Q  Y  *  S  P  L  S  G  *  C  T  W  S  K  S  A  F  Y  F  E  W  *  N  G  Q  I  F  E  K  C  S  C  S  P   : G  P  S  *  D  K  R  C  I  H  C  C  N  *  *  R  K  H  Q  D  N  A  Q  P  K  H  A  S  C  S  S  S  Y  S  W  C  S  S  H  G  *  C  I  Q  H  A  P  P  L  D  W  W  R  N  D  C  S  I  I  *  Y  R  C  I  A  *  S  S  Q  T  S  S  *  F  E  *  C  I  Y  S  L  Q  I  S  G  V  I  L  H  L  A  *   : A  C  G  L  H  H  Q  Y  I  G  W  C  L  V  *  G  I  L  C  F  T  *  S  S  *  E  G  D  A  *  S  M  L  *  L  F  E  P  R  W  S  I  L  R  R  T  S  I  F  A  F  W  L  K  P  S  S  I  K  S  R  L  S  F  L  C  C  G  Y  L  W  C  W  P  L  A  A  S  F  P  I  T  E  T  Y  M  D  W  S  P  A  N  I   : E  C  I  C  N  H  F  P  Y  H  Q  G  R  R  G  Q  T  D  V  L  P  C  Y  C  S  R  I  L  Q  E  A  L  L  K  *  G  C  N  C  Y  K  Q  N  K  A  M  P  L  Y  H  L  H  Q  Y  S  G  C  E  F  Q  E  F  S  P  T  V  A  Q  F  L  V  S  S  L  P  L  *  S  F  S  F  V  P  M  I  D  Y  T  I  N  C  K  V  N  I  S  C  K  </first_frame>
            <second_frame>  F  S  I  C  G  L  F  C  L  I  R  K  K  V  C  F  V  S  R  N  L  S  V  L  T  A  K  H  S  S  D  T  A  *  *  Y  Y  S  F  Y  F  H  F  *  I  Y  R  D  S  R  A  L  L  E  K  Q  R  R  R  F  S  C  S  V  P  V  S  R  P  F  S  A  L  S  P  A  T  M  V  D  L  G  L  F  G  S  L  L  V  V  V  L  G  F  V  A  V  F  C  F  F  I  G  R  N  K  S  K  N  D  G  S  A  T  S  T  T  T  T  T  L  Y  N  G  E  S  R  S  K  D  G  N  E  D  V  D  I  I  I  V  G  A  G  V  A  G  A  A  L  A  H  T  L  G  K  :  E  G  R  R  V  K  V  I  E  R  D  L  T  E  P  D  R  I  V  G  E  L  L  Q  P  G  G  Y  L  K  L  Q  E  L  G  L  E   : D  C  V  E  K  I  D  A  Q  R  V  F  G  Y  A  L  F  K  D  G  K  S  T  R  L  S  Y  P  L  E  K  F  H  S  D  V  S  G  R  S  F  H  N  G  R  F  I  Q  R  M  R  E  K  A  A  A  L  P  N :   V  K  L  E  Q  G  T  V  T  S  L  L  E  E  K  G  I  I  R  G  V  Q  Y  K  T  K  S  G  E  E  L  K  A  Y  A  P  L  T  V  V  C  D  G  C  F  S  N  L  R  R  T  L  C  D  P  K  :  V  E  V  P  S  C  F  V  G  L  V  L  E  N  C  Q  L  P  H  E  N  H  G  H  V  I  L  A  D  P  S  P  I  L  F  Y  P  I  S  S  T  E  V  R  C  L  V  D  V  P  G  Q  K  V  P  S  I  S  N  G  E  M  A  K  Y  L  K  S  V  V  A  P  Q  :  V  P  P  E  I  K  D  A  F  I  A  A  I  D  K  G  N  I  R  T  M  P  N  R  S  M  P  A  A  P  H  P  T  P  G  A  L  L  M  G  D  A  F  N  M  R  H  P  L  T  G  G  G  M  T  V  A  L  S  D  I  V  V  L  R  D  L  L  K  P  L  R  D  L  N  D  A  S  T  L  C  R  Y  L  E  S  F  Y  T  L  R  K  :  P  V  A  S  T  I  N  T  L  A  G  A  L  Y  K  V  F  C  A  S  P  D  Q  A  R  K  E  M  R  E  A  C  F  D  Y  L  S  L  G  G  V  F  S  E  G  P  V  S  L  L  S  G  L  N  P  R  P  L  S  L  V  C  H  F  F  A  V  A  I  F  G  V  G  R  L  L  L  P  F  P  S  P  K  R  I  W  I  G  A  R  L  I  S  :  S  A  S  A  I  I  F  P  I  I  K  A  E  G  V  R  Q  M  F  F  P  A  T  V  P  A  Y  Y  R  K  P  S  *  S  E  V  V  T  A  I  N  R  I  R  L  C  H  C  T  T  S  I  S  I  L  V  V  S  F  K  S  L  V  Q  L  L  H  N  F  W  F  L  V  F  P  C  N  L  F  P  L  F  P  *  L  I  T  L  L  T  A  K  *  I  *  V  V  K </second_frame>
            <third_frame>   L  V  Y  V  A  C  S  V  *  F  V  K  K  C  A  L  C  L  E  I  S  L  Y  *  Q  Q  S  I  H  Q  I  Q  P  N  N  T  T  L  S  I  F  I  F  R  Y  I  E  I  H  G  H  C  *  R  S  N  V  V  V  S  L  A  P  F  P  S  P  V  L  F  L  H  C  R  R  R  Q  W  W  I  *  V  S  S  D  L  F  L  *  W  C  W  G  S  L  Q  F  S  V  F  S  L  V  V  T  K  V  K  M  M  A  R  Q  L  A  P  L  Q  L  R  C  I  M  E  S  P  D  Q  R  M  E  T  K  T  L  I  S  S  S  S  V  P  V  L  P  V  L  L  L  L  T  L  L  A  R :   R  G  V  V  *  K  *  L  K  E  I  *  R  S  L  I  E  L  L  E  N  S  Y  N  R  V  V  I  S  N  C  R  S  W  D  W  K  :  I  V  L  R  K  L  M  L  N  A  F  L  G  M  P  F  S  R  M  E  R  V  H  V  F  L  I  P  W  R  N  F  T  L  M  F  L  E  G  A  S  T  M  G  V  S  F  K  E  C  E  R  K  L  Q  L  F  P   : M  S  N  S  S  K  A  L  L  R  L  C  L  K  K  R  G  S  L  E  V  F  S  T  R  L  N  P  V  K  S  *  K  H  M  H  H  *  L  *  Y  V  M  V  V  S  R  I  C  D  V  P  S  V  I  Q  R :   *  K  S  L  L  V  L  L  V  W  S  W  R  T  V  S  F  H  M  K  I  T  D  M  S  F  W  L  I  R  H  L  S  C  S  I  P  *  A  V  L  K  S  A  V  W  L  M  Y  L  V  K  K  C  L  L  F  R  M  V  K  W  P  N  I  *  K  V  *  L  L  P  R :   S  L  L  R  *  K  M  H  S  L  L  Q  L  I  K  E  T  S  G  Q  C  P  T  E  A  C  Q  L  L  L  I  L  L  L  V  L  F  S  W  V  M  H  S  T  C  A  T  P  *  L  V  E  E  *  L  *  H  Y  L  I  S  L  Y  C  V  I  F  S  N  L  F  V  I  *  M  M  H  L  L  F  A  D  I  W  S  H  F  T  P  C  V  S :   L  W  P  P  P  S  I  H  W  L  V  P  C  I  R  Y  F  V  L  H  L  I  K  L  G  R  R  C  V  K  H  A  L  I  I  *  A  S  V  E  Y  S  Q  K  D  Q  Y  L  C  F  L  A  *  T  L  V  H  *  V  S  F  V  I  S  L  L  W  L  S  L  V  L  A  A  C  C  F  L  S  H  H  R  N  V  Y  G  L  E  P  G  *  Y  R :   V  H  L  Q  S  F  S  L  S  S  R  Q  K  G  S  D  R  C  S  S  L  L  L  F  P  H  I  T  G  S  P  P  E  V  R  L  *  L  L  *  T  E  *  G  Y  A  I  V  P  P  P  S  V  F  W  L  *  V  S  R  V  *  S  N  C  C  T  I  F  G  F  *  S  S  L  V  I  F  F  L  C  S  H  D  *  L  H  Y  *  L  Q  S  K  Y  K  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59344" stop="59676"/>
                    <exon start="59996" stop="60107"/>
                    <exon start="60232" stop="60406"/>
                    <exon start="60643" stop="60811"/>
                    <exon start="61101" stop="61319"/>
                    <exon start="61421" stop="61696"/>
                    <exon start="62088" stop="62366"/>
                    <exon start="62454" stop="62552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1659</number_coding_nucleotides>
                  <number_encoded_amino_acids>553</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYRDSRALLEKQRRRFSCSVPVSRPFSALSPATMVDLGLFGSLLVVVLGFVAVFCFFIGRNKSKNDGSATSTTTTTLYNGESRSKDGNEDVDIIIVGAGVAGAALAHTLGKEGRRVKVIERDLTEPDRIVGELLQPGGYLKLQELGLEDCVEKIDAQRVFGYALFKDGKSTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAAALPNVKLEQGTVTSLLEEKGIIRGVQYKTKSGEELKAYAPLTVVCDGCFSNLRRTLCDPKVEVPSCFVGLVLENCQLPHENHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAKYLKSVVAPQVPPEIKDAFIAAIDKGNIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDLNDASTLCRYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMREACFDYLSLGGVFSEGPVSLLSGLNPRPLSLVCHFFAVAIFGVGRLLLPFPSPKRIWIGARLISSASAIIFPIIKAEGVRQMFFPATVPAYYRKPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61438" e_stop="62090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="61438" e_stop="62090" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61438" stop="62090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGCATTCATTGCTGCAATTGATAAAGGAAACATCAGGACAATGCCCAACCGAAGCATGCCAGCTGCTCCTCATCCTACTCCTGGTGCTCTTCTCATGGGTGATGCATTCAACATGCGCCACCCCTTGACTGGTGGAGGAATGACTGTAGCATTATCTGATATCGTTGTATTGCGTGATCTTCTCAAACCTCTTCGTGATTTGAATGATGCATCTACTCTTTGCAGATATCTGGAGTCATTTTACACCTTGCGTAAGGTAAAAATCTTTTGAAATCCTTCCTTGCATAAGCAACATATTTGGTTGCTGTAAGCACCACATTTTCTACTTTGAGAATCCTTAGTGAAGTAAAAACTCTATGTTGACTAGTGAGTAATTAAGGATCTGGAACCACAAAACTGACATTCCTTTGATGATTTCACCAGCTATCAATCTACCAATAACAATGTAATGTAAAAAGGCTTGGTTCATTACGATGTTTTAGGACTTTTTGAACTCACTCAATTCTCCTATAATTTGCCTTCTACATAAAAAAAAAAAGGGAGAGCAAAAGAGGATGACTCAATTCTCCTGCAGCACTTTCAGACTTAACTAGAATATTATTACCTTTATAGATATTGACTTGTTCTGCTCGCATATTTATCTGCAGCCT</gDNA_template>
            <first_frame> R  C  I  H  C  C  N  *  *  R  K  H  Q  D  N  A  Q  P  K  H  A  S  C  S  S  S  Y  S  W  C  S  S  H  G  *  C  I  Q  H  A  P  P  L  D  W  W  R  N  D  C  S  I  I  *  Y  R  C  I  A  *  S  S  Q  T  S  S  *  F  E  *  C  I  Y  S  L  Q  I  S  G  V  I  L  H  L  A  *  G  K  N  L  L  K  S  F  L  A  *  A  T  Y  L  V  A  V  S  T  T  F  S  T  L  R  I  L  S  E  V  K  T  L  C  *  L  V  S  N  *  G  S  G  T  T  K  L  T  F  L  *  *  F  H  Q  L  S  I  Y  Q  *  Q  C  N  V  K  R  L  G  S  L  R  C  F  R  T  F  *  T  H  S  I  L  L  *  F  A  F  Y  I  K  K  K  R  E  S  K  R  G  *  L  N  S  P  A  A  L  S  D  L  T  R  I  L  L  P  L  *  I  L  T  C  S  A  R  I  F  I  C  S   </first_frame>
            <second_frame>  D  A  F  I  A  A  I  D  K  G  N  I  R  T  M  P  N  R  S  M  P  A  A  P  H  P  T  P  G  A  L  L  M  G  D  A  F  N  M  R  H  P  L  T  G  G  G  M  T  V  A  L  S  D  I  V  V  L  R  D  L  L  K  P  L  R  D  L  N  D  A  S  T  L  C  R  Y  L  E  S  F  Y  T  L  R  K  V  K  I  F  *  N  P  S  L  H  K  Q  H  I  W  L  L  *  A  P  H  F  L  L  *  E  S  L  V  K  *  K  L  Y  V  D  *  *  V  I  K  D  L  E  P  Q  N  *  H  S  F  D  D  F  T  S  Y  Q  S  T  N  N  N  V  M  *  K  G  L  V  H  Y  D  V  L  G  L  F  E  L  T  Q  F  S  Y  N  L  P  S  T  *  K  K  K  G  R  A  K  E  D  D  S  I  L  L  Q  H  F  Q  T  *  L  E  Y  Y  Y  L  Y  R  Y  *  L  V  L  L  A  Y  L  S  A  A  </second_frame>
            <third_frame>   M  H  S  L  L  Q  L  I  K  E  T  S  G  Q  C  P  T  E  A  C  Q  L  L  L  I  L  L  L  V  L  F  S  W  V  M  H  S  T  C  A  T  P  *  L  V  E  E  *  L  *  H  Y  L  I  S  L  Y  C  V  I  F  S  N  L  F  V  I  *  M  M  H  L  L  F  A  D  I  W  S  H  F  T  P  C  V  R  *  K  S  F  E  I  L  P  C  I  S  N  I  F  G  C  C  K  H  H  I  F  Y  F  E  N  P  *  *  S  K  N  S  M  L  T  S  E  *  L  R  I  W  N  H  K  T  D  I  P  L  M  I  S  P  A  I  N  L  P  I  T  M  *  C  K  K  A  W  F  I  T  M  F  *  D  F  L  N  S  L  N  S  P  I  I  C  L  L  H  K  K  K  K  G  E  Q  K  R  M  T  Q  F  S  C  S  T  F  R  L  N  *  N  I  I  T  F  I  D  I  D  L  F  C  S  H  I  Y  L  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61439" stop="61711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAFIAAIDKGNIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDLNDASTLCRYLESFYTLRKVKIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="76436" PGL_stop="81248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76436" e_stop="76562"/>
            <exon e_start="76702" e_stop="76741"/>
            <exon e_start="77392" e_stop="77433"/>
            <exon e_start="78498" e_stop="78872"/>
            <exon e_start="80270" e_stop="80325"/>
            <exon e_start="80861" e_stop="81248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.779" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.738" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76436" e_stop="76562" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.779" acc_prob="0.925">
            <gDNA_intron_boundary i_start="76563" i_stop="76701" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76702" e_stop="76741" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.907">
            <gDNA_intron_boundary i_start="76742" i_stop="77391" i_length="650"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77392" e_stop="77433" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77434" i_stop="78497" i_length="1064"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78498" e_stop="78872" e_length="375"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78873" i_stop="80269" i_length="1397"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80270" e_stop="80325" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.738">
            <gDNA_intron_boundary i_start="80326" i_stop="80860" i_length="535"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="80861" e_stop="81248" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76436" stop="76562"/>
              <exon start="76702" stop="76741"/>
              <exon start="77392" stop="77433"/>
              <exon start="78498" stop="78872"/>
              <exon start="80270" stop="80325"/>
              <exon start="80861" stop="81248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78591" stop="78872"/>
              <exon start="80270" stop="80325"/>
              <exon start="80861" stop="81013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATGTCAAGGAGGCCTATCAATCCATCTCGACGTGTAACAGACAATGGAGCTTCTTCCTTAGAAGGCTCAATTCGGTCAAAGACACGGTCTCCCCCATATTTAACAATTGGACTTATTATTGTG : GTATCATTTCTTCTCATAGGGTATTTTTACCGTGACACAG : GTACTTTTGCCAGTATTAAAGGAGCTATCAGTAGAGTGGAAG : GGGATTTTTTATGTACTGTAGAGGTTCAAAAGGCCATTTCTGTTTTGAACAAAGCATATGGTGATAGCATGCATAAGGTGCTGCATGTTGGTCCTGATACTTGCTCGGTAGTTGCTAAATTGTTAGAAGAGGAAGATACCGAAGCTTGGGGTATAGAACCATATGATATAGAGGATGCAGGTCATTTCTGCAAGAAACTCGTGCATAAGGGCATTGTTCGTGTGGCTGACATAAAATTTCCTCTCCCATATCGTGCAAAATCGTTCTCTCTTGTGATCATCTCAGATGCGTTGGATTACTTGTCTCCAAAGTATCTTAATAGGACTCTTCCCGAACTGGCGAGGGTGTCATCTGATGGACTCGTTATTTTCACAG : GTTATCCACGCCACCATAAAGTTAAGTTTGCAGAGAAGTCCAGATTTGGGGGGCTG : GCTAAATTGAGGAGCTCAACGTGGTGGGTGCGATATTTTGTTCAAACAAGTTTAGAGGAAAATGAAATTGCCATCAAGAAATTCGAGCAAGCTGCTTCGAAGAAGTCTTATGTTCCTAGCTGCCAAATTTTTCACTTGAAATCTTACCGTTGATATAAATACTCAAAATTTATACACAGTAGGACTCACGCAGAGCTCGTGGATGATGGTCAAGATATGTTGTGACAACTTTCAAGTTTCAGCTGTGTTGATAAGTTGTTTAGAATAGCAGTTGTCTCCTTGAAAAATTATTGAGTATGCCATCATCTTCATTAGTGTAGTCTTGTTAGATATATGGAGTTATGGCAGTTTGTTGATTTATTGCAAAAATGGGAATTAAATTGCTGTT</gDNA_template>
            <first_frame> N  D  V  K  E  A  Y  Q  S  I  S  T  C  N  R  Q  W  S  F  F  L  R  R  L  N  S  V  K  D  T  V  S  P  I  F  N  N  W  T  Y  Y  C   : G  I  I  S  S  H  R  V  F  L  P  *  H  R :   Y  F  C  Q  Y  *  R  S  Y  Q  *  S  G  R :   G  F  F  M  Y  C  R  G  S  K  G  H  F  C  F  E  Q  S  I  W  *  *  H  A  *  G  A  A  C  W  S  *  Y  L  L  G  S  C  *  I  V  R  R  G  R  Y  R  S  L  G  Y  R  T  I  *  Y  R  G  C  R  S  F  L  Q  E  T  R  A  *  G  H  C  S  C  G  *  H  K  I  S  S  P  I  S  C  K  I  V  L  S  C  D  H  L  R  C  V  G  L  L  V  S  K  V  S  *  *  D  S  S  R  T  G  E  G  V  I  *  W  T  R  Y  F  H  R :   L  S  T  P  P  *  S  *  V  C  R  E  V  Q  I  W  G  A   : G  *  I  E  E  L  N  V  V  G  A  I  F  C  S  N  K  F  R  G  K  *  N  C  H  Q  E  I  R  A  S  C  F  E  E  V  L  C  S  *  L  P  N  F  S  L  E  I  L  P  L  I  *  I  L  K  I  Y  T  Q  *  D  S  R  R  A  R  G  *  W  S  R  Y  V  V  T  T  F  K  F  Q  L  C  *  *  V  V  *  N  S  S  C  L  L  E  K  L  L  S  M  P  S  S  S  L  V  *  S  C  *  I  Y  G  V  M  A  V  C  *  F  I  A  K  M  G  I  K  L  L   </first_frame>
            <second_frame>  M  M  S  R  R  P  I  N  P  S  R  R  V  T  D  N  G  A  S  S  L  E  G  S  I  R  S  K  T  R  S  P  P  Y  L  T  I  G  L  I  I  V  :  V  S  F  L  L  I  G  Y  F  Y  R  D  T   : G  T  F  A  S  I  K  G  A  I  S  R  V  E   : G  D  F  L  C  T  V  E  V  Q  K  A  I  S  V  L  N  K  A  Y  G  D  S  M  H  K  V  L  H  V  G  P  D  T  C  S  V  V  A  K  L  L  E  E  E  D  T  E  A  W  G  I  E  P  Y  D  I  E  D  A  G  H  F  C  K  K  L  V  H  K  G  I  V  R  V  A  D  I  K  F  P  L  P  Y  R  A  K  S  F  S  L  V  I  I  S  D  A  L  D  Y  L  S  P  K  Y  L  N  R  T  L  P  E  L  A  R  V  S  S  D  G  L  V  I  F  T   : G  Y  P  R  H  H  K  V  K  F  A  E  K  S  R  F  G  G  L  :  A  K  L  R  S  S  T  W  W  V  R  Y  F  V  Q  T  S  L  E  E  N  E  I  A  I  K  K  F  E  Q  A  A  S  K  K  S  Y  V  P  S  C  Q  I  F  H  L  K  S  Y  R  *  Y  K  Y  S  K  F  I  H  S  R  T  H  A  E  L  V  D  D  G  Q  D  M  L  *  Q  L  S  S  F  S  C  V  D  K  L  F  R  I  A  V  V  S  L  K  N  Y  *  V  C  H  H  L  H  *  C  S  L  V  R  Y  M  E  L  W  Q  F  V  D  L  L  Q  K  W  E  L  N  C  C  </second_frame>
            <third_frame>   *  C  Q  G  G  L  S  I  H  L  D  V  *  Q  T  M  E  L  L  P  *  K  A  Q  F  G  Q  R  H  G  L  P  H  I  *  Q  L  D  L  L  L  W :   Y  H  F  F  S  *  G  I  F  T  V  T  Q  :  V  L  L  P  V  L  K  E  L  S  V  E  W  K  :  G  I  F  Y  V  L  *  R  F  K  R  P  F  L  F  *  T  K  H  M  V  I  A  C  I  R  C  C  M  L  V  L  I  L  A  R  *  L  L  N  C  *  K  R  K  I  P  K  L  G  V  *  N  H  M  I  *  R  M  Q  V  I  S  A  R  N  S  C  I  R  A  L  F  V  W  L  T  *  N  F  L  S  H  I  V  Q  N  R  S  L  L  *  S  S  Q  M  R  W  I  T  C  L  Q  S  I  L  I  G  L  F  P  N  W  R  G  C  H  L  M  D  S  L  F  S  Q  :  V  I  H  A  T  I  K  L  S  L  Q  R  S  P  D  L  G  G  W :   L  N  *  G  A  Q  R  G  G  C  D  I  L  F  K  Q  V  *  R  K  M  K  L  P  S  R  N  S  S  K  L  L  R  R  S  L  M  F  L  A  A  K  F  F  T  *  N  L  T  V  D  I  N  T  Q  N  L  Y  T  V  G  L  T  Q  S  S  W  M  M  V  K  I  C  C  D  N  F  Q  V  S  A  V  L  I  S  C  L  E  *  Q  L  S  P  *  K  I  I  E  Y  A  I  I  F  I  S  V  V  L  L  D  I  W  S  Y  G  S  L  L  I  Y  C  K  N  G  N  *  I  A  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128L09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76437" stop="76562"/>
                    <exon start="76702" stop="76741"/>
                    <exon start="77392" stop="77433"/>
                    <exon start="78498" stop="78872"/>
                    <exon start="80270" stop="80325"/>
                    <exon start="80861" stop="81013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMSRRPINPSRRVTDNGASSLEGSIRSKTRSPPYLTIGLIIVVSFLLIGYFYRDTGTFASIKGAISRVEGDFLCTVEVQKAISVLNKAYGDSMHKVLHVGPDTCSVVAKLLEEEDTEAWGIEPYDIEDAGHFCKKLVHKGIVRVADIKFPLPYRAKSFSLVIISDALDYLSPKYLNRTLPELARVSSDGLVIFTGYPRHHKVKFAEKSRFGGLAKLRSSTWWVRYFVQTSLEENEIAIKKFEQAASKKSYVPSCQIFHLKSYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 56 chains have been computed
$ 
$ memory statistics:
$ 145368 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 6922 bytes was the average size of a spliced alignment
$ 21544 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1538 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 78 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:48:20
-->
