<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:26:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336987" ref_strand="+" ref_description="SGN-E336987 [cTOE-5-N4]">
      <seq>tccattaaagggaagagaagcatagagttgagtttgtgattgcatttccgcaaaacggcatcgtgtttttgatcgataatacttcgtagacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="52" stop="1043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="352" g_stop="743" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E336987" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="352" e_stop="743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATG</genome_strand>
        <mrna_strand>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAG--ACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456349" ref_strand="+" ref_description="SGN-E456349 [cSTS-29-C14]">
      <seq>cacaaacacaaagaagcatagaacagactctgtgattccaactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgatatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaattgtcctagtggtaactattttgagtaccaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="354" g_stop="796" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3812" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="564" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E456349" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="354" e_stop="796"/>
          <exon e_start="3688" e_stop="3812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTT</genome_strand>
        <mrna_strand>CA-CAAACACAA-AGAAGCATAGAACAGACTCTGTGATTCCAACTCCACAAAACGACAGCGT-TTTT-GATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGATATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAATTGTCCTAGTGGTAACTATTTTGAGTACCAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440980" ref_strand="+" ref_description="SGN-E440980 [cSTA-28-B20]">
      <seq>caaacacaaagaagcatagaacagactctgtgattgggactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgttttaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="98" stop="4076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="357" g_stop="796" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3777" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="527" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E440980" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="357" e_stop="796"/>
          <exon e_start="3688" e_stop="3777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAAC</genome_strand>
        <mrna_strand>CAAACACAA-AGAAGCATAGAACAGACTCTGTGATTGGGACTCCACAAAACGACA--GCGTTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTTTTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444587" ref_strand="+" ref_description="SGN-E444587 [cSTA-43-D9]">
      <seq>caaacacaaagaagcatagaacagactctgtgattccaactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgttttaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="357" g_stop="796" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3710" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="460" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E444587" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="357" e_stop="796"/>
          <exon e_start="3688" e_stop="3710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAA</genome_strand>
        <mrna_strand>CAAACACAA-AGAAGCATAGAACAGACTCTGTGATTCCAACTCCACAAAACGACAGCG--TTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTTTTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704204" ref_strand="+" ref_description="SGN-E704204 [FA23CE10]">
      <seq>gggaagagaagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccatacactggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaggaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="61" stop="4448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="361" g_stop="796" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="4148" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="897" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E704204" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="361" e_stop="796"/>
          <exon e_start="3688" e_stop="4148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCC</genome_strand>
        <mrna_strand>GGGAAGAGAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAGGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710568" ref_strand="+" ref_description="SGN-E710568 [FA55DC10]">
      <seq>gaatagaagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgatttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcactcgaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgctatatgcgcactgagtgcattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63" stop="1093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="363" g_stop="793" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E710568" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="363" e_stop="793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCG-TGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCT</genome_strand>
        <mrna_strand>GAATAGAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGATTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACTCGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGCTATATGCGCACTGAGTGCATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707598" ref_strand="+" ref_description="SGN-E707598 [FA33BH01]">
      <seq>cgataagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccatacactggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaaatcccgggagaggctgcaacttatgaaccagcagcacctgaagaaagtgctgcccctgctgatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="66" stop="4439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="365" g_stop="796" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="4139" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="884" r_length="452" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E707598" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="365" e_stop="796"/>
          <exon e_start="3688" e_stop="4139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGG</genome_strand>
        <mrna_strand>CGATAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAATCCCGGGAGAGGCTGCAACTTATGAACCAGCAGCACCTGAAGAAAGTGCTGCCCCTGCTGATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585311" ref_strand="+" ref_description="SGN-E585311 [67769]">
      <seq>gagaaacacaaacacaaagaagcatagaacagactctgtgattccaactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcatctttattacaattgtcctagtggtaactactttgagtaccaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaacgtttgagactttcatggaatcttcacgtgaaagcctgctttaaggacgcactcttttgcactgagagaaactttgcaagggagaaaaaactaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="367" g_stop="796" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="445" r_length="428" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3953" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="716" r_length="271" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E585311" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="367" e_stop="796"/>
          <exon e_start="3688" e_stop="3953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAA-GTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGC-TTAAGGATGCACTC-TTTGCTCTGAGAGAAACTCTGCAAGGG-G-AAAAACTGACAAG</genome_strand>
        <mrna_strand>AGAAGCATAGAACAGACTCTGTGATTCCAACTCCACAAAACGACA--GCGTTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCATCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTACCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAACGTTTGAGACTTTCATGGAATCTTCACGTGAAAGCCTGCTTTAAGGACGCACTCTTTTGCACTGAGAGAAACTTTGCAAGGGAGAAAAAACTAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476600" ref_strand="+" ref_description="SGN-E476600 [cSTB-45-K16]">
      <seq>caaattccattaaaggaagagaaacacaaacacaaagaagcatagaacagactctgtgattccaactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="367" g_stop="796" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="463" r_length="428" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3764" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="540" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E476600" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="367" e_stop="796"/>
          <exon e_start="3688" e_stop="3764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCA</genome_strand>
        <mrna_strand>AGAAGCATAGAACAGACTCTGTGATTCCAACTCCACAAAACGACA--GCGTTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360961" ref_strand="+" ref_description="SGN-E360961 [cLPP-13-D11]">
      <seq>tagagcagagtttgtgattgcatttccgcaaaacggcttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattcggagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaattgtcctagtggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaagtttgagagtttcatggattcttcacgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="74" stop="4189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="374" g_stop="796" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3889" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="620" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E360961" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="374" e_stop="796"/>
          <exon e_start="3688" e_stop="3889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTG</genome_strand>
        <mrna_strand>TAGAGCAGAGTTTGTGATTGCATTTCCGCAAAACGG---C-T-TTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCGGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGAGTTTCATGGATTCTTCACGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724932" ref_strand="+" ref_description="SGN-E724932 [FC25CC10]">
      <seq>ggccgaattggtgattgcatttccccaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgaaactttcatggattcttcacgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="377" g_stop="796" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3891" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="624" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E724932" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="377" e_stop="796"/>
          <exon e_start="3688" e_stop="3891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAA</genome_strand>
        <mrna_strand>GGCCGAATTGGTGATTGCATTTCCCCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAAACTTTCATGGATTCTTCACGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442580" ref_strand="+" ref_description="SGN-E442580 [cSTA-34-E21]">
      <seq>aacagactctgtgattccaactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgatggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81" stop="4057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="377" g_stop="796" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3757" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="488" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E442580" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="377" e_stop="796"/>
          <exon e_start="3688" e_stop="3757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTG</genome_strand>
        <mrna_strand>AACAGACTCTGTGATTCCAACTCCACAAAACGACA--GCGTTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGATGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619245" ref_strand="+" ref_description="SGN-E619245 [69932]">
      <seq>caactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtctccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaattgtcctagtggtaactactttgagtaccaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaagtttgagactttcatggaatcgtcacgtgaaagcctgcttaaggacgcactctttgcactgagagaaactttgcaaggagaaaaactaacaagctccaattgcacggtcgctgtggtaggagtaggagaggctttccatacactggaccaaggaaaaccatacaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="94" stop="4326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="394" g_stop="796" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="4026" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="742" r_length="341" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E619245" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="394" e_stop="796"/>
          <exon e_start="3688" e_stop="4026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGA-CAAGG-AAACCATACAAGCA</genome_strand>
        <mrna_strand>CAACTCCACAAAACGACAGCG--TTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCTCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTACCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGAATCGTCACGTGAAAGCCTGCTTAAGGACGCACTCTTTGCACTGAGAGAAACTTTGCAAGGAGAAAAACTAACAAGCTCCAATTGCACGGTCGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACCAAGGAAAACCATACAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441276" ref_strand="+" ref_description="SGN-E441276 [cSTA-29-J14]">
      <seq>caactccacaaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatccgagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactataggtactcttatgagtcgccgttacctgtcgggcgtcttgtagttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="94" stop="4075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="394" g_stop="796" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3775" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="489" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E441276" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="394" e_stop="796"/>
          <exon e_start="3688" e_stop="3775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACA</genome_strand>
        <mrna_strand>CAACTCCACAAAACGACAGCG--TTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCCGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGGTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTAGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286683" ref_strand="+" ref_description="SGN-E286683 [cLES-14-I15]">
      <seq>ggcatcgtgtttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="108" stop="4076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="408" g_stop="796" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3776" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="478" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E286683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="408" e_stop="796"/>
          <exon e_start="3688" e_stop="3776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAA</genome_strand>
        <mrna_strand>GGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481198" ref_strand="+" ref_description="SGN-E481198 [cSTD-17-I12]">
      <seq>acagactctgtgattccaaacgacagcgtttttgatcgataacatttcgtatacacaatgttcagaaaccagtacgataccgatgtgacgacatggtcgccggcgggacggctatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggactcactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaattgtcctagtggtaactactttgagtaccaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaagtttgagactttcatggaatcttcacgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="102" stop="4191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="416" g_stop="796" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="408" r_length="381" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3891" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="612" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E481198" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="416" e_stop="796"/>
          <exon e_start="3688" e_stop="3891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAA</genome_strand>
        <mrna_strand>GTTTTTGATCGATAACATTTCGTATACACAATGTTCAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGACGGCTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTCACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTACCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGAATCTTCACGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724207" ref_strand="+" ref_description="SGN-E724207 [FC23BF04]">
      <seq>tggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="182" stop="4295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="482" g_stop="796" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3995" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="623" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E724207" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="482" e_stop="796"/>
          <exon e_start="3688" e_stop="3995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTT</genome_strand>
        <mrna_strand>TGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479496" ref_strand="+" ref_description="SGN-E479496 [cSTD-10-M19]">
      <seq>tggtcgccggcgggaaggccacttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgaataggtttgagaaccaaagcccatgtgattcttcgcgtctgttaacaaggcaaattctgagctatcttctcaccagaagaaaatcttcaaagttgatgaccacatcggagttgcaatcgctggaatcactgctgacggccgtgtacctttctcgttatatgcgtactgagtgtattaactatagttactcttatgaatcgccgttacctgtcgggcgtcttgttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcatctttattacaattgtcctagtggtaactactttgagtaccaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaagtttgagacttttcatggatctttcacgtgaaagcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="182" stop="4199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="482" g_stop="796" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3899" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="530" r_length="212" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E479496" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="482" e_stop="796"/>
          <exon e_start="3688" e_stop="3899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCG-ATAGGTTTGAGATCGAAGACGCATGTGATTC-TGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTA-CTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGAC-TTTCATGGATTCTTCACGTGAAAGCCTGCT</genome_strand>
        <mrna_strand>TGGTCGCCGGCGGGAAGGCCACTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGAATAGGTTTGAGAACCAAAGCCCATGTGATTCTTCGCGTCTGTTAACAAGGCAAATTCTGAGCTATCTTCTCACCAGAAGAAAATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGAATCACTGCTGACGGCCGTGTACCTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAATCGCCGTTACCTGTCGGGCGTCTTGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGG-AACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCATCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTACCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTTCATGGATCTTTCACGTGAAAGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302090" ref_strand="+" ref_description="SGN-E302090 [cLEW-19-O1]">
      <seq>aaactccacaaatacttcagttatttttatagtactgctgaaatggtggaagtttttttcatctgggtaatagcttgaacacctttattgcccttttgtgcagttcttgtaaaatgcctgctcattttacacttgtcaaatatccattagatcaatttgaaacttgggtgaaaaaagttccatatttaagatttagcagagaaccatctaagttcaaattatgattttctgcacttttagtgcatgcaaatgcttaaacatattccataagagtttgtctttttctagagaagtaagtagtgttatatatcatattctttatgttttgtttgaatacaagtggggccactcgacactagtgcagatccagaagtcacactcatcatcacctaagatacaaccaatgaatgtataatacgacaaactcgctttgtttcactttataagataatatgattgggtgttgagtctaagaaagaaaagaagacctctacaatttgcggtcttaaatatgtcatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="1149" stop="2271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1449" g_stop="1971" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E302090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1449" e_stop="1971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</genome_strand>
        <mrna_strand>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404262" ref_strand="-" ref_description="SGN-E404262 [PPC-13-K19]">
      <seq>atggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaattgtcctagtggtaactactttgagtaccaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaagtttgagactttcatggaatcttcacgtgaaagcctgcttaaggacgcactctttgcactgagagaaactttgcaaggagaaaaactaacaagctccaattgcacggtcgctgtggtaggagtaggagaggctttccatacactggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaggaggctgctagtgatgaaccagcagcacctgaagagggtgctgccactgctgatgaaggagctgccccaatggatatttgataacttatgccctcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaatcatgctttactttggtccaaacaatttaaaactcatgcttctgaaattgaactacttaaaacttaaatgactttgttgggttgtaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3419" stop="4636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3719" g_stop="4367" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="674"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E404262" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404262" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3719" e_stop="4367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAAGTGACTTTGTTGAGTTGG</genome_strand>
        <mrna_strand>ATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTACCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGAATCTTCACGTGAAAGCCTGCTTAAGGACGCACTCTTTGCACTGAGAGAAACTTTGCAAGGAGAAAAACTAACAAGCTCCAATTGCACGGTCGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAGGAGGCTGCTAGTGATGAACCAGCAGCACCTGAAGAGGGTGCTGCCACTGCTGATGAAGGAGCTGCCCCAATGGATATTTGATAA-CTTATGCCCTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACA-ATTTAAAACTCATGCTTCTGAAATTGAACTACTTAAAAC-TTAAATGACTTTGTTGGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581865" ref_strand="+" ref_description="SGN-E581865 [7496]">
      <seq>gtctggtgctcacctttattacaattgtcctagtggtaactactttgagtaccaagcttttgccattggatctcggtcacaagctgcaaaaacctacttggaacgtaagtttgagactttcatggaatcgtcacgtgaaagcctgcttaaggacgcactctttgcactgagagaaactttgcaaggagaaaaactaacaagctccaattgcacggtcgctgtggtaggagtaggagaggctttccatacactggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaggaggctgctagtgatgaaccagcagcacctgaagagggtgctggcactgctgatgaaggagctggcccaatggatatttgataacttatgtcctcctttagggctcacttctttcatattccagagatttcttcttagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3453" stop="4521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3753" g_stop="4221" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E581865" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3753" e_stop="4221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATT-CAGAGATTTCTTCTTAGAAT</genome_strand>
        <mrna_strand>GTCTGGTGCTCACCTTTATTACAATTGTCCTAGTGGTAACTACTTTGAGTACCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGAATCGTCACGTGAAAGCCTGCTTAAGGACGCACTCTTTGCACTGAGAGAAACTTTGCAAGGAGAAAAACTAACAAGCTCCAATTGCACGGTCGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACACTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAGGAGGCTGCTAGTGATGAACCAGCAGCACCTGAAGAGGGTGCTGGCACTGCTGATGAAGGAGCTGGCCCAATGGATATTTGATAA-CTTATGTCCTCCTTTAGGGCTCACTTCTTTCATATTCCAGAGATTTCTTCTTAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236981" ref_strand="+" ref_description="SGN-E236981 [cLEL-7-K4](-)">
      <seq>caaaaacctacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3539" stop="4580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3839" g_stop="4279" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="464"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E236981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3839" e_stop="4279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</genome_strand>
        <mrna_strand>CAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352352" ref_strand="+" ref_description="SGN-E352352 [cTOS-9-K6]">
      <seq>tcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaatcatgctttactttggtccaaacatctttaaaactcatgcttctgaagttgaactaaaaacagctttaagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3583" stop="4653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3883" g_stop="4349" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="482"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E352352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3883" e_stop="4349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</genome_strand>
        <mrna_strand>TCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355276" ref_strand="+" ref_description="SGN-E355276 [cTOS-18-F14]">
      <seq>taaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaatcatgctttactttggtccaaacatctttaaaactcatgcttctgaagttgaactaaaaacagctttaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3600" stop="4653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3900" g_stop="4349" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="471"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E355276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3900" e_stop="4349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</genome_strand>
        <mrna_strand>TAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237179" ref_strand="+" ref_description="SGN-E237179 [cLEL-7-K14](-)">
      <seq>ctttccatcccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="3692" stop="4580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3992" g_stop="4279" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="311"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E237179" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3992" e_stop="4279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</genome_strand>
        <mrna_strand>CTTTCCATCCCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238576" ref_strand="+" ref_description="SGN-E238576 [cLED-17-P13]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatggattggtaagaggactgtcactggaggaatgttgtcgggtgggttcttgcagcggtggttctgtgattcgatctcttgggggtgaggtaacacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="4850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="350" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5331" g_stop="5150" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="532" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E238576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288883" ref_strand="+" ref_description="SGN-E288883 [cLES-17-L22]">
      <seq>gaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacttctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatggattggtaagaggactgtcactggaggaatgttgtccggtgggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6975" stop="4901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6793" g_stop="6784" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="49" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="255" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="367" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5331" g_stop="5201" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="498" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E288883" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6793" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTC</genome_strand>
        <mrna_strand>GAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACTTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCCGGTGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243688" ref_strand="+" ref_description="SGN-E243688 [cLED-35-A11]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcncaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccancaattggcgaagcgaaagttactgatgctacaggtgcacgagatctgtttgcaagtggatttttgtatggatcggtaagaggactgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="4925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="350" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5331" g_stop="5225" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="457" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E243688" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACT</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCNCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCANCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCACGAGATCTGTTTGCAAGTGGATTTTTGTATGGATCGGTAAGAGGACTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240044" ref_strand="+" ref_description="SGN-E240044 [cLED-32-K18]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="4947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="350" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5331" g_stop="5247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="435" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E240044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATG</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574073" ref_strand="+" ref_description="SGN-E574073 [33483]">
      <seq>gctcagtgtgtatgtctggttgacgaagttggcaaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaacctgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtaaagttattaaggcggccatcaaaatagccaaggaagaaggcctttttgtttctcttgatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgctttgcaaacgaggacgaagcaactgagctactaagggatgaagagaaagcagatcctgatgcagcacttgaatatttggctaaacattgcaagtgggctgtagtcaccttagctcaaaacggatgcattgcgaaacataagaaagagtttgtacgtgttccaagcgattggcgaagcgaaagttactgatgctacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="7158" stop="4981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6943" g_stop="6938" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="79" r_length="73" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="119" r_length="40" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.813" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="226" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="324" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="436" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5331" g_stop="5281" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="488" r_length="52" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E574073" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6943" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGC-AATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAA-CTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCC-AGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGT</genome_strand>
        <mrna_strand>GCTCAG..................................................................................TGTGTATGTCTGGTTGACGAAGTTGGCAAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACCTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTA-AAGTTATTAAGGCGGCCATCAAAATAGCCAAGGAAGAAGGCCTTTTTGTTTCTCTTGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTTGCAAACGAGGACGAAGCAACTGAGCTACTAAG............................................................................................................GGATGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAACATTGCAAGTGGGCTGTAGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATAAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTACGTGTTCCAAGCGATTGGCGAAGCGAAAGTTACTGATGCTACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287252" ref_strand="+" ref_description="SGN-E287252 [cLES-15-G9]">
      <seq>ttagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="7359" stop="5403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7059" g_stop="6938" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="194" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="233" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="341" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="439" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="551" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E287252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7059" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG</genome_strand>
        <mrna_strand>TTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334793" ref_strand="+" ref_description="SGN-E334793 [cTOE-3-H10]">
      <seq>gatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="7279" stop="5418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6979" g_stop="6938" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="114" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="153" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="261" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5821" g_stop="5718" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="463" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E334793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6979" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATG</genome_strand>
        <mrna_strand>GATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451371" ref_strand="+" ref_description="SGN-E451371 [cSTS-12-D23]">
      <seq>gaaattcgaccagccaccattaatggtgaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttcccaagtggttggtactgagatatgnccatactgaatgtagaagttattaaggcggccatcaaaatagcaaaggaagaagggcctttttgtttcttctagatcttgccagctttgagatggtaagggatgaagagaaagcagatcctgatgcagcacttgaatatttggctaaacattgcagtgggcctgtagtcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8882" stop="5447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8582" g_stop="8418" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="429" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="501" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="541" r_length="40" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.813" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="652" r_length="111" r_score="0.917"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="6020" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="660" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6019" i_stop="5822" i_length="198">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5821" g_stop="5747" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="735" r_length="75" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E451371" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8582" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="6020"/>
          <exon e_start="5821" e_stop="5747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTT-CTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATG-CCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAA-GGTCTTTTTGTTTC-TCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTT</genome_strand>
        <mrna_strand>GAAATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGNCCATACTGAATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAGGGCCTTTTTGTTTCTTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTAAG......................................................................................................................................................................................................GGATGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAACATTGCAGTGGGCCTGTAGTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409914" ref_strand="+" ref_description="SGN-E409914 [PPI-15-M16]">
      <seq>gcaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaatacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttaaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttattaaggcggccatcaaaatagcaaaggaagaaggcctttttgtttctcttgatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggaatcgggaaacatagacctttgctttgcaaacgaggacgaagcaactgagctactaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8750" stop="5467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8451" g_stop="8418" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="292" r_length="258" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="364" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="403" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="609" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5821" g_stop="5767" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="664" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E409914" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8451" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGC</genome_strand>
        <mrna_strand>GCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATA----TCC-T-TACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAATACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTAAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAGGCCTTTTTGTTTCTCTTGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAATCGGGAAACATAGACCTTTGCTTTGCAAACGAGGACGAAGCAACTGAGCTACTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAACATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367828" ref_strand="+" ref_description="SGN-E367828 [TUS-22-G5]">
      <seq>aactgaaaagagaggacttcaaaggttctaagtggctggtactgatatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcagaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagctccggatacatagacctttgcttcacaaacgaagatgaagcaactgaactgctaaggggtgaatacaacagcagatcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="6964" stop="5629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="239" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5821" g_stop="5797" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="265" r_length="26" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E367828" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAG-TCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAA-AGCAGATCCTGAT</genome_strand>
        <mrna_strand>AACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGATATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAGAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGCTCCGGATACATAGACCTTTGCTTCACAAACGAAGATGAAGCAACTGAACTGCTAAG............................................................................................................GGGTGAATACAACAGCAGATCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451385" ref_strand="+" ref_description="SGN-E451385 [cSTS-12-H15]">
      <seq>aattcgaccagccaccattaatggtgaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttattaaggcggccatcaaaatagcaaaggaagaaggcctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaaattgaattattggagtcgggaaacatagacctttgctttgcaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8880" stop="5655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8580" g_stop="8418" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="427" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="499" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="538" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="646" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="5955" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="720" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E451385" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8580" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCT-AATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACG</genome_strand>
        <mrna_strand>AATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAGGCCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTTGCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483336" ref_strand="+" ref_description="SGN-E483336 [cSTE-9-A3]">
      <seq>aaattcgaccagccaccattaatggtgaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagaagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttattaaggcggccatcaaaatagcaaaggaagaaaggcctttttgtttctctagatcttgccagctttgagatggtgaaggaaagtttaaatcacctctaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8881" stop="5695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8581" g_stop="8418" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="429" r_length="265" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="501" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="540" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="649" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="5995" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="684" r_length="35" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E483336" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8581" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAG-AGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAG-AAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTG-AGG-AAGTTTAAATCACCTCTAATTGAA</genome_strand>
        <mrna_strand>AAATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAAGGCCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAAGGAAAGTTTAAATCACCTCTAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410597" ref_strand="+" ref_description="SGN-E410597 [PPI-17-D3]">
      <seq>caccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactggatgtagaagttattaaggcggccatcaaaatagcaaaggaagaaggcctttttgtttctctagatcttgccagctttgaattggtgaggaagtttaatcacctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8824" stop="5701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8524" g_stop="8418" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="371" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="443" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="482" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="590" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="6001" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="616" r_length="26" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E410597" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8524" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="6001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTA</genome_strand>
        <mrna_strand>CACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGGATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAGGCCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAA..................................................................................................................................................................................................................................................................................................TTGGTGAGGAAGTTT-AATCACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458197" ref_strand="+" ref_description="SGN-E458197 [cPRO-4-P18]">
      <seq>gggagttgaaattcgaccagccaccattaatggtgaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaatacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttattaaggcggccatcaaaatagcaaaggaagaaggccttttttgtttctctagatcttgccagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8889" stop="6020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8589" g_stop="8418" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="436" r_length="264" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="508" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="547" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6320" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="654" r_length="107" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E458197" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8589" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTC-TTTTTGTTTCTCTAGATCTTGCCAGCTTTG</genome_strand>
        <mrna_strand>GGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAATACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAGGCCTTTTTTGTTTCTCTAGATCTTGCCAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558527" ref_strand="+" ref_description="SGN-E558527 [17881]">
      <seq>tgggagttgaaattcgaccagccaccattaatggtgaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcacatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaatacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctgggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaaggtggttggtactgagatatgccatactgaatgtagaagttattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8890" stop="6081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8590" g_stop="8418" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="437" r_length="264" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="510" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="550" r_length="40" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6381" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="595" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E558527" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8590" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCT-GGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAA-GGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAG</genome_strand>
        <mrna_strand>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCACATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAATACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAGG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440551" ref_strand="+" ref_description="SGN-E440551 [cSTA-17-K8]">
      <seq>tgaaattcgaccagcctccattaatggtgaaaatcacagtgaaagggtgaatataggtgcaccagttgtacttgcactacaaccatttgccctagtagatcatatagctaaggttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8883" stop="6084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8583" g_stop="8472" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8471" i_stop="7202" i_length="1270">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="376" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="448" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="487" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6384" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="529" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E440551" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8583" e_stop="8472"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATT</genome_strand>
        <mrna_strand>TGAAATTCGACCAGCCTCCATTAATGGTGAAAATCACAGTGAAAGGGTGAATATAGGTGCACCAGTTGTACTTGCACTACAACCATTTGCCCTAGTAGATCATATAGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439173" ref_strand="+" ref_description="SGN-E439173 [cSTA-11-O13]">
      <seq>gaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8855" stop="6085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8555" g_stop="8418" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="402" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="474" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="513" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6385" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="554" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E439173" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8555" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTAT</genome_strand>
        <mrna_strand>GAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464191" ref_strand="+" ref_description="SGN-E464191 [cPRO-17-A24]">
      <seq>tgaaattcgaccagccaccattaatggtgaaaatcacagtgaatgtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaatacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaagggttcaagtggttggtactgagatatgccatactgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8883" stop="6096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8583" g_stop="8418" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="430" r_length="264" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="502" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="541" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6396" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="571" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E464191" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8583" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAAT</genome_strand>
        <mrna_strand>TGAAATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAATGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAATACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGGTTCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439948" ref_strand="+" ref_description="SGN-E439948 [cSTA-14-O21]">
      <seq>taatggtgaaaatcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaagttcaggcagatgaactgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8862" stop="6355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8562" g_stop="8418" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="409" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="481" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6655" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="498" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E439948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8562" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAG</genome_strand>
        <mrna_strand>TAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416670" ref_strand="+" ref_description="SGN-E416670 [STM-23-M12]">
      <seq>tggaaatcacagtgaaagtgtaaatataaggtgcaccaagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcangcagatgaactgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8856" stop="6355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8556" g_stop="8418" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="405" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="477" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6655" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="494" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E416670" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8556" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCAAAGTGAAAGTGTAAATAT-AGGTGCACC-AGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAG</genome_strand>
        <mrna_strand>TGGAAATCACAGTGAAAGTGTAAATATAAGGTGCACCAAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAN................................................................................................................GCAGATGAACTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324696" ref_strand="+" ref_description="SGN-E324696 [cTOC-8-C16]">
      <seq>ttaatggtgaaaatcaaagtgaaagtgtgaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcactgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="6489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8563" g_stop="8418" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="410" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6789" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="477" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E324696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8563" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</genome_strand>
        <mrna_strand>TTAATGGTGAAAATCAAAGTGAAAGTGTGAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAC..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341193" ref_strand="+" ref_description="SGN-E341193 [cTOE-22-C15]">
      <seq>tcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8850" stop="6515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8550" g_stop="8418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="397" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6815" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="438" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E341193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8550" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCG</genome_strand>
        <mrna_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284556" ref_strand="+" ref_description="SGN-E284556 [cLES-3-P5]">
      <seq>aaaatcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8854" stop="6640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8554" g_stop="8418" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6940" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="399" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E284556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8554" e_stop="8418"/>
          <exon e_start="7201" e_stop="6940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTC</genome_strand>
        <mrna_strand>AAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267750" ref_strand="-" ref_description="SGN-E267750 [cLEI-12-L1]">
      <seq>agtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcatcagttgaagcatttatgtttagcaatgcccttcttgtttgagattccatgcattattgagatccatgactaagtaagcacagtgcatgtggggaaatcaatgacctaaagccaaggcatgttagctatagttatattaattataatattataaaggtagagatgattggctgattggggtatgaagagccaaaagatgagtaatttccccgtaaattcagccttgtcttattgtgtttttataatgacactgtatatgaatgattggcatctgttgaattgtttggttttgaatgtagtcatctttggtcaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11352" stop="10195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11052" g_stop="10500" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="576"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E267750" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267750" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11052" e_stop="10500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</genome_strand>
        <mrna_strand>AGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334730" ref_strand="+" ref_description="SGN-E334730 [cTOE-3-G13]">
      <seq>ccacatgcactgtgcttacttagtcatggatctcaataatgcatggaatctcaaacaagaaggcattgctaaacataaatgcttcaactgatgaagaaatatgtttggaatgtgctgtcaatgttttatgttattccaataacaatttaccaaataaatctattgaaaatgatttctcagagttacaagcacttgtgggcgtaacttccttttccaagctgaagaatttctgggaaataaggggcaaaagtcttaactacaaagcagtgacgtaccgatgctatccaataagtttgatattatttggaagggtaacagccaatatccatgactgttctccatacagatgctcacggtgtaaaataaatctctggaaagcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="10419" stop="11404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10719" g_stop="11104" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E334730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10719" e_stop="11104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAAGGGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</genome_strand>
        <mrna_strand>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAA-GGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349354" ref_strand="+" ref_description="SGN-E349354 [cTOS-1-G20]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10802" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E349354" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350573" ref_strand="+" ref_description="SGN-E350573 [cTOS-5-J15]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10802" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E350573" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354403" ref_strand="+" ref_description="SGN-E354403 [cTOS-17-I14]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10802" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E354403" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352036" ref_strand="+" ref_description="SGN-E352036 [cTOS-13-B11]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11657" stop="10511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10803" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E352036" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691550" ref_strand="+" ref_description="SGN-E691550 [LH_Ea06G12]">
      <seq>catttaaggaggaatatgattctatgattggtgttgtccgccctttacatcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgtccaatgagatcagtgcccatgcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaatagtcatggatattgactgttatccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttgtttcacagaaattcttcagcttggaaaaggaagttacgcccagaagtgcttgtaacttgagaaatcgttttcaatagattaatttggtatattgttattggaataacataaaacattgacagcacattcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11538" stop="10519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11242" g_stop="10814" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E691550" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11242" e_stop="10814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCT</genome_strand>
        <mrna_strand>CATTTAAGGAGGAATATGATTCTATGATTGGTGTTGTCCGCCCTTTACATCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGTCCAATGAGATCAGTGCCCATGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAATAGTCATGGATATTGACTGTTATCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTGTTTCACAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCAGAAGTGCTTGTAACT-TGAGAAATCGTTTTCAATAGATTAATTTGGTATATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370674" ref_strand="+" ref_description="SGN-E370674 [TUS-27-O16](-)">
      <seq>tcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="12657" stop="10519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12357" g_stop="12251" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11414" g_stop="10822" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="700" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E370674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12357" e_stop="12251"/>
          <exon e_start="11414" e_stop="10822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</genome_strand>
        <mrna_strand>TCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222070" ref_strand="+" ref_description="SGN-E222070 [cLEL-36-G10](-)">
      <seq>agatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11566" stop="10519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11266" g_stop="10822" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="459"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E222070" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11266" e_stop="10822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</genome_strand>
        <mrna_strand>AGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305866" ref_strand="+" ref_description="SGN-E305866 [cLEX-14-P10]">
      <seq>agcaaccaactactgttaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11643" stop="10539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11343" g_stop="10839" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E305866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11343" e_stop="10839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATT</genome_strand>
        <mrna_strand>AGCAACCAACTACTGTTACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745293" ref_strand="+" ref_description="SGN-E745293 [GI|47105785]">
      <seq>aggcatgtggtattcactattctgccctaccaattactctgtggaaagccttcatttctcactcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaactccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="17026" stop="10612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16726" g_stop="16454" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="417" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="10912" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="1198" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1199" polyA_stop="1217"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E745293" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1198</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16726" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="10912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAA</genome_strand>
        <mrna_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAACTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695390" ref_strand="+" ref_description="SGN-E695390 [LH_Ea06G12](-)">
      <seq>gtgatgaggaatatgattctatgattggtgttgtccgtgaaacaaaaaaaaagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgtccaatgagatcagtgcccatgcaactctctctttttttgctttccagagatttattttaccccgtgagcatctgtatggagaatagtcatggatattgactgttatccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttagggcttttgccccttgtttctcagtaattcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="11539" stop="10638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11239" g_stop="10938" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E695390" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11239" e_stop="10938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAG</genome_strand>
        <mrna_strand>GTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAAAAAAAAAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGTCCAATGAGATCAGTGCCCATGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACCCCGTGAGCATCTGTATGGAGAATAGTCATGGATATTGACTGTTATCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAGGGCTTTTGCCCCTTGTTTCTCAGTAATTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729708" ref_strand="+" ref_description="SGN-E729708 [LA21DD12]">
      <seq>caatcaaggtcttgatcgcgnnggaaatcgncttcaaggcagccctcacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcacctctctcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16810" stop="10799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16515" g_stop="16454" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.823"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.88"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="206" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="332" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="484" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11099" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="800" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E729708" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16515" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTT</genome_strand>
        <mrna_strand>CAATCAAGGTCTTGATCGCGNNGGAAATCGNCTTCAAGGCAGCCCTCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCACCTCTCTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704357" ref_strand="+" ref_description="SGN-E704357 [FA24AC07]">
      <seq>cagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16913" stop="10849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16613" g_stop="16454" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="303" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="581" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11149" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="847" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E704357" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16613" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGC</genome_strand>
        <mrna_strand>CAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731938" ref_strand="+" ref_description="SGN-E731938 [LA28CE04]">
      <seq>ctctactgatcagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16923" stop="10895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16623" g_stop="16454" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="313" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="439" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="591" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11195" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="811" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E731938" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16623" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAC</genome_strand>
        <mrna_strand>CTCTACTGATCAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579496" ref_strand="+" ref_description="SGN-E579496 [86625]">
      <seq>ctgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatccagccaagtttctgaggaagctaactgatgaagagatagccttcattgcccagtcggcaaccaattactgtaaccttgctcgtgtccatgcagctgagaattcgaagtcctttgatgaaattgaatttggaaaagatgcttcgtaaagaaagtatgccaaacgtgatgaggaatatgattctatgattgggtgtgtgtccggtgaaacaaccctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16918" stop="10890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16618" g_stop="16454" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="301" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="427" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="579" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11213" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="784" r_length="205" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E579496" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16618" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTT-GAAAAGATGCTTCGT-AAG-AAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTG</genome_strand>
        <mrna_strand>CTGATCAGAAAGAGGGCTAAA-C----GAAG-A-A-GGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCCAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCCCAGTCGGCAACCAATTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCGAAGTCCTTTGATGAAATTGAATTTGGAAAAGATGCTTCGTAAAGAAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347370" ref_strand="+" ref_description="SGN-E347370 [cTOF-33-D10]">
      <seq>actccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16843" stop="10927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16543" g_stop="16454" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="360" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="512" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11227" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="700" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E347370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16543" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATA</genome_strand>
        <mrna_strand>ACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457613" ref_strand="+" ref_description="SGN-E457613 [cPRO-3-O23]">
      <seq>atcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaagagatagccttcattgcccagtcggcaaccaattactgtaaccttgctcgtgtccatgcagctgagaattcgaagtcctttgatgaaattgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16893" stop="10970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16615" g_stop="16454" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="298" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="424" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="576" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11270" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="720" r_length="144" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E457613" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16615" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTG</genome_strand>
        <mrna_strand>ATCAGAAAGAGGGCTAAA-C----GAAG---AAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCCCAGTCGGCAACCAATTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCGAAGTCCTTTGATGAAATTG-ATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455028" ref_strand="+" ref_description="SGN-E455028 [cSTS-25-I7]">
      <seq>caaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaagagatagccttcattgcccagtcgggcaccaattactgtaaccttgctcgtgtccatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16943" stop="11003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16643" g_stop="16454" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="604" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11303" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="716" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E455028" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16643" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTG</genome_strand>
        <mrna_strand>CAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCCCAGTCGGGCACCAATTACTGTAACCTTGCTCGTGTCCATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344734" ref_strand="+" ref_description="SGN-E344734 [cTOF-21-O10]">
      <seq>agaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgcttcgtgtccatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16912" stop="11003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16612" g_stop="16454" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="303" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="581" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11303" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="694" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E344734" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16612" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGC-TCGTGTCCATGCAGCTG</genome_strand>
        <mrna_strand>AGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTTCGTGTCCATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604491" ref_strand="+" ref_description="SGN-E604491 [74627]">
      <seq>cacaaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaagagatagccttcattgcccagtcgggcaaccaattactgtaaccttgctcgtgtccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16945" stop="11008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16645" g_stop="16454" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="328" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="454" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="606" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11308" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="714" r_length="108" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E604491" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16645" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTC-AGCAACCAACTACTGTAACCTTGCTCGTGTCCATGC</genome_strand>
        <mrna_strand>CACAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCCCAGTCGGGCAACCAATTACTGTAACCTTGCTCGTGTCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467461" ref_strand="+" ref_description="SGN-E467461 [cSTB-49-E5]">
      <seq>ggaaagcaatttactccctgggatccatggttcgagcgaccggcaaagctcttgatcgtgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtgaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaacagatagccttcattgctcagtcagcaaccaattactgtaaccttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16855" stop="11018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16555" g_stop="16454" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="246" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="372" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.92"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="524" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11318" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="621" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E467461" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16555" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTC</genome_strand>
        <mrna_strand>GGAAAGCAATTTACTCCCTGGGATCCATGGTTCGAGCGACCGGCAAAGCTCTTGATCGTGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTGAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAACAGATAGCCTTCATTGCTCAGTCAGCAACCAATTACTGTAACCTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487090" ref_strand="+" ref_description="SGN-E487090 [cSTE-24-O11]">
      <seq>cacaaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaagtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaagagatagccttcattgcccagtcggcaaccaattactgtaaccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16945" stop="11019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16645" g_stop="16454" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="328" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="454" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="606" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11319" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="702" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E487090" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16645" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCT</genome_strand>
        <mrna_strand>CACAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCCCAGTCGGCAACCAATTACTGTAACCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477670" ref_strand="+" ref_description="SGN-E477670 [cSTD-1-I20]">
      <seq>caataacacaaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcangatcccttgtgaaacagaacacaaagattccctccggagaggtatgggcaggcaatccagctaagtttctgagggagctaactgatgaagagatagccttcattgcccagtcggcaaccatttactgtaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16946" stop="11024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16651" g_stop="16454" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="334" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="460" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="612" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11324" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="703" r_length="91" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E477670" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16651" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACC</genome_strand>
        <mrna_strand>CAATAACACAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCANGATCCCTTGTGAAACAGAACACAAAGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGGAGCTAACTGATGAAGAGATAGCCTTCATTGCCCAGTCGGCAACCATTTACTGTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445119" ref_strand="+" ref_description="SGN-E445119 [cSTA-44-N23]">
      <seq>ctcaatcgtctcttttgctaggccacaataacacaaacaccttgactgcacagccccactgatcgaaagagggctaaacgaagaaggaggaggtaaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaccaattactgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16946" stop="11027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="214" r_length="182" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="358" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="484" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="636" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11330" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="720" r_length="84" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E445119" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCCCCACTGATC-GAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTAAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGC-ACCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203932" ref_strand="+" ref_description="SGN-E203932 [cLEC-22-A23]">
      <seq>gggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16856" stop="11030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16556" g_stop="16454" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="247" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="373" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="11415" i_length="1057">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11414" g_stop="11330" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="458" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E203932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16556" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="11414" e_stop="11330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</genome_strand>
        <mrna_strand>GGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450691" ref_strand="+" ref_description="SGN-E450691 [cSTS-10-I21]">
      <seq>caaaccaccttgacctgcacagccccactgatcagaaagagggctaaacgaagaaggaggaaggtcaaaaatgggaacccttgggaaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcangatcccttgtgaaacagaaccaaggattccctccggagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgatgaagagaagccttcattgcccagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16943" stop="11044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16645" g_stop="16454" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="330" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="456" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="607" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11343" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="678" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E450691" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16645" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACCTTGA-CTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGA-AAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCA</genome_strand>
        <mrna_strand>CA-AACCACCTTGACCTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-CG-AAGAAG--G-AGGA--AGGTCAAAAATGGGAACCCTTGGGAAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCANGATCCCTTGTGAAACAGAAC-CAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGA-AGCCTTCATTGCCCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728924" ref_strand="+" ref_description="SGN-E728924 [LA19BF06]">
      <seq>cttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16954" stop="11066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16654" g_stop="16454" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="344" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="470" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="622" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11366" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="671" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E728924" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16654" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAG</genome_strand>
        <mrna_strand>CTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452594" ref_strand="+" ref_description="SGN-E452594 [cSTS-17-G2]">
      <seq>caaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaaggtcaaaaatgggaacccttgggaaagcaatttactccctgggactccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcangatcccttgtgaaacagaacacaangattccctccgnagaggtatgggcaggcaatccagctaagtttctgaggaagctaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16943" stop="11070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16643" g_stop="16454" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="328" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="454" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="606" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="11370" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="651" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E452594" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16643" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="11370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGA-TCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGAT</genome_strand>
        <mrna_strand>CAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-CG-AAGAAG--G-AGGA--AGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGACTCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCANGATCCCTTGTGAAACAGAACACAANGATTCCCTCCGNAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCAGCTAAGTTTCTGAGGAAGCTAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561117" ref_strand="+" ref_description="SGN-E561117 [20877]">
      <seq>gaggtcaaaaatgggaacccttggggaaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaaggattccctccggagaggtatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16878" stop="11946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16578" g_stop="16454" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="271" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="397" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="549" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E561117" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16578" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCAAACATGGGAACCC-TCGGG-AAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG</genome_strand>
        <mrna_strand>GAGGTCAAAAATGGGAACCCTTGGGGAAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559553" ref_strand="+" ref_description="SGN-E559553 [19068]">
      <seq>acacttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaagccttgggaaagcaatttactccctgggatccatggttcgagcgaccggcaaagctcttgatcgtgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtgaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggatcccttgtgaaacagaacacaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16940" stop="11965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16640" g_stop="16454" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="322" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="448" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.92"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12265" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="586" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E559553" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16640" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGA</genome_strand>
        <mrna_strand>ACAC-TTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAAGCCTTGGGAAAGCAATTTACTCCCTGGGATCCATGGTTCGAGCGACCGGCAAAGCTCTTGATCGTGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTGAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGATCCCTTGTGAAACAGAACACAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483233" ref_strand="+" ref_description="SGN-E483233 [cSTE-8-D5]">
      <seq>caatcgtctcttttgctaggccacaataacacaaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcaatgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgccagatcccttgtgaaacagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16946" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="213" r_length="183" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="357" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="483" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12271" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="615" r_length="132" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E483233" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACA</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAATGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCCAGATCCCTTGTGAAACAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314211" ref_strand="+" ref_description="SGN-E314211 [cTOA-21-K3]">
      <seq>tgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16930" stop="11994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16630" g_stop="16454" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="447" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12294" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="556" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E314211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16630" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</genome_strand>
        <mrna_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483225" ref_strand="+" ref_description="SGN-E483225 [cSTE-8-B5]">
      <seq>tcgttcgagccgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaaccatttttgataaagctccagtggtggataaagaatgtatttgtagctccaggtgccacagtcattggaaacctccatgtgggaacgccaattcatctattttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgangatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16828" stop="11994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16528" g_stop="16454" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="225" r_length="149" r_score="0.861"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="351" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12294" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="460" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E483225" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16528" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCGAG-CGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAA-CGTATTCGATAAAGCTCCGGTGGTGGAT-AAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGG-ACG-CAATTCATCTA-TTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</genome_strand>
        <mrna_strand>TCGTTCGAGCCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACCATTTTTGATAAAGCTCCAGTGGTGGATAAAGAATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAAACCTCCATGTGGGAACGCCAATTCATCTATTTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGANGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246351" ref_strand="+" ref_description="SGN-E246351 [cLEF-52-A12]">
      <seq>gagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcataaggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16912" stop="12019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16613" g_stop="16454" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="304" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="430" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="514" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E246351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16613" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATG</genome_strand>
        <mrna_strand>GAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAAGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440120" ref_strand="+" ref_description="SGN-E440120 [cSTA-15-I7]">
      <seq>caaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaggaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaagatgctgcccaccattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16943" stop="12072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16643" g_stop="16454" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.92"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12372" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="483" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E440120" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16643" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCAT</genome_strand>
        <mrna_strand>CAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C-------GAAGAAGGAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGATGCTGCCCACCATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311777" ref_strand="+" ref_description="SGN-E311777 [cLEZ-9-M20]">
      <seq>ttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16935" stop="12072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16635" g_stop="16454" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12372" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="483" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E311777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16635" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCAT</genome_strand>
        <mrna_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267789" ref_strand="+" ref_description="SGN-E267789 [cLEI-12-J18]">
      <seq>tttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16952" stop="12079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16652" g_stop="16454" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="343" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="469" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12379" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="493" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E267789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16652" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCT</genome_strand>
        <mrna_strand>TTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438148" ref_strand="+" ref_description="SGN-E438148 [cSTA-6-E22]">
      <seq>ttgcttgactgcacaggcccactgatcggaaagagggctaaacgaagaaggacgaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggacaactcccttgttcatgtggccaaatcaaacataagtcaaaaggtgctgcccaccattatagggaacaatgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16893" stop="12176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16639" g_stop="16454" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="322" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12476" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="444" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E438148" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16639" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACT</genome_strand>
        <mrna_strand>TTGCTTGACTGCACAGGCCCACTGATCGGAAAGAGGGCTAAA-C----GAAG-A-A-GGACGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAACATAAGTCAAAAGGTGCTGCCCACCATTATAGGGAACAATGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271448" ref_strand="+" ref_description="SGN-E271448 [cLEM-5-N11]">
      <seq>acaaacaccttgactgcacagctctactgatcagaaagagggcgaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatgggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttgacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatatggaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16944" stop="12182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="335" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12482" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="451" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E271448" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAAT</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCGAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATGGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTGACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATATGGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314311" ref_strand="+" ref_description="SGN-E314311 [cTOA-21-K2]">
      <seq>tgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtgggcaaatcaaatataagtcaaaaggtgctgcccaccatcataaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16930" stop="12188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16630" g_stop="16454" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12487" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="432" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E314311" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16630" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGA</genome_strand>
        <mrna_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGGCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246687" ref_strand="+" ref_description="SGN-E246687 [cLEF-45-I2]">
      <seq>tcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16964" stop="12211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16664" g_stop="16454" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="355" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12511" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E246687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16664" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAA</genome_strand>
        <mrna_strand>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445120" ref_strand="+" ref_description="SGN-E445120 [cSTA-44-N23]">
      <seq>cccttgtacgttttattcttgaattttgctaggccacaataacacaaacaccttgactgcacagccccactgatcgaaagagggctaaacgaagaaggaggaggtaaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaacaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16946" stop="12250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="225" r_length="182" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="369" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12550" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="417" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E445120" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACA</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCCCCACTGATC-GAAAGAGGGCTAAAC--------GAAGAAGGAGGAGGTAAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442486" ref_strand="+" ref_description="SGN-E442486 [cSTA-33-P23]">
      <seq>gcaaacaccttgactgcacagccccactgatcgaaagagggctaaacgaagaaggaggaggtaaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgtagctccaggtgccacagtcattggagacgtccatgtgggacgcaattcatctatttggtatggatgtgtgctaagaggtgatgttaacagcatcagtgtcggatctggcaccaatatacaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16943" stop="12251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12551" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="373" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E442486" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGAC</genome_strand>
        <mrna_strand>GCAAACACCTTGACTGCACAGCCCCACTGATC-GAAAGAGGGCTAAAC--------GAAGAAGGAGGAGGTAAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTGCTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGCACCAATATACAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470947" ref_strand="+" ref_description="SGN-E470947 [cSTB-21-M10]">
      <seq>ggccacaattacacaaacaccttgactgcacagccccactgatcagaaagagggcttaacgaagaaagaggtggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaagagcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggtggataaggatgtatttgttgctccaggtgccacagtcattggagacgtccatgtgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16947" stop="13851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16658" g_stop="16454" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14151" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="304" r_length="108" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E470947" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16658" e_stop="16454"/>
          <exon e_start="14258" e_stop="14151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAG-GCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGAC</genome_strand>
        <mrna_strand>GGCCACAAT--TACACAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTTAA-C----GAAG-A-AA-GAGGTGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGAGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGTGGATAAGGATGTATTTGTTGCTCCAGGTGCCACAGTCATTGGAGACGTCCATGTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470950" ref_strand="+" ref_description="SGN-E470950 [cSTB-21-M20]">
      <seq>ggccacaatatcacaaacaccttgactgcacagccccactgatcagaaagagggctaaacgaagaaagaggaggtcaaaaatgggaacccttgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgccttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatttttgataaagctccagtggaggataaggatgtatttgtagctccaggtgccacagtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16947" stop="13869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="195" r_length="183" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14169" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E470950" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14258" e_stop="14169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTG</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCCCCACTGATCAGAAAGAGGGCTAAA-C----GAAG-A-AA-GAGGAGGTCAAAAATGGGAACCCTTGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATTTTTGATAAAGCTCCAGTGGAGGATAAGGATGTATTTGTAGCTCCAGGTGCCACAGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412832" ref_strand="-" ref_description="SGN-E412832 [STM-16-L12]">
      <seq>gcagaaattccctatacttacgtctcatgtaactattttgctggtgtttcttaccaaattggtccagccaggagccactgctcctcctcgagacaaagtcatcattcctggagatgggaatgttaaggctgtattcaatgaagaacatgacattggcacctacaccattaaggctgttgatgacccgagaacgttgaacaagtccctttacatcaggcctcccaagaacaccttatcgttcaacgagcttgtggctatatgggagaaactgattggtaaaactctcgagaaaatctacgttccaggggagcaaattctcaaagacattgggacatctcaaacgctaatcaattacatgctatcagtcaaccactcaacattcgtgagcggtgatcataccaattttgagattgagccatcgtttggggttgaggcatcggaagtttatccagatgttaagtacaccaccgtggaggagtacttggtcacgttgtctaaactacacgtttgatgtcttcgataactcgaataaactgttagatgatgagtgttgtcagacattttgtctggaagtatgagtgcttgttaactatttcatcagagacgggttgaatggtatgttttaagtctgttttttctgtccatactgcgtagtactataatgaaaaaggaagacattcgcgtttaaaaaaaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="20639" stop="19190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20339" g_stop="20210" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20209" i_stop="20113" i_length="97">
            <donor d_prob="0.651" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20112" g_stop="19909" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="332" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19908" i_stop="19826" i_length="83">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19825" g_stop="19490" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="666" r_length="334" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E412832" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412832" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20339" e_stop="20210"/>
          <exon e_start="20112" e_stop="19909"/>
          <exon e_start="19825" e_stop="19490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGGGTACGTTGAAAAGAAATCCTTAGGAAGCGTGCCAACAGAACAAGTTACATGACAAAATGTTTCATTTTTGTTTACTTTTTGTTCTGTTTGTCTGCAGCTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGAGTCAGTAATCTTTATATCATTCATCTGTTTCTTTCAATTTAAACATACGTAATCCTGACAATCTATATTGCATACTGTTGCAGCATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATCTGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAA</genome_strand>
        <mrna_strand>GCAGAAATTCCCTATACTTACGTCTCATGTAACTATTTTGCTGG-TGTTTCTTACCAA-ATTGGTCCAGCCAGGAGCCACTGCTCCTCCTCGAGACAAAGTCATCATTCCTGGAGATGGGAATGTTAAGG.................................................................................................CTGTATTCAATGAAGAACATGACATTGGCACCTACACCATTAAGGCTGTTGATGACCCGAGAACGTTGAACAAGTCCCTTTACATCAGGCCTCCCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGGGGAGCAAATTCTCAAAGACATTGGGA...................................................................................CATCTCAAACGCTAATCAATTACATGCTATCAGTCAACCACTCAACATTCGTGAGCGGTGATCATACCAATTTTGAGATTGAGCCATCGTTTGGGGTTGAGGCATCGGAAGTTTATCCAGATGTTAAGTACACCACCGTGGAGGAGTA-CTTGGTCACGTTGTCTAAACTACACGTTTGATGTCTTCGATAACTCGAATAAACTGTTAGATGATGAGTGTTGTCAGACATTTTGTCTGGAAGTATGAGTGCTTGTTAACTATTTCATCAGAGACGGGTTGAATGGTATG-TTTTAAGTCTGTTTTTTCTGTCCATACTGCGTAGTACTATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545666" ref_strand="+" ref_description="SGN-E545666 [TUS-68-K4](-)">
      <seq>atttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtattgttgtggctttgctaatattgtttttcagtagtaatctcctttgatgaattgattgagttgcttcacttctccagtttgttgatccaccactgctttgacaatatccgccacagaaatcatgcctactaccttcccatcgatcactggaacatgtcgtatgtggtgctctgtgatcataaaacgttccatcacatttccatagtgcattaagcatcagtaacttcgcgagttagaactaatacttaccactcatgagctgcattgcttgaagaatgtttgtgtccgatgtgacggttatcagcttgctctgttgcaatggtagtactaatatttgagcacaaaacagaagacagatgaaaaaaagataaagccaggaagaccgatatctatagagtacctgctcggtcataatatctccgactcttgtgtatttagatgatctatcctgtacaattacctttcgcaaataatctgtacgtctcttgtacaatgtgcatagatgaataagttcaacattgtgtgtattactaaagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="24742" stop="23454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24442" g_stop="23753" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E545666" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24442" e_stop="23753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</genome_strand>
        <mrna_strand>ATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310522" ref_strand="+" ref_description="SGN-E310522 [cLEZ-19-G13]">
      <seq>ttggctaatatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaatcaatgattcacacgatattaactcaattttttaaggggagagttcatcaaggtagcttgctacttgggctctcgtgtgtcgcctatgcgttgcactactgcatgggcctggcacaccccaccaaatctacttcaaatcttttggttgatatattgtgtaatgtaatctaattcaaatctttcggttgatatattgtgtaatgtgttcttattatgtttatacatacttatatttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="25029" stop="24000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24729" g_stop="24300" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E310522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24729" e_stop="24300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</genome_strand>
        <mrna_strand>TTGGCTAATATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612686" ref_strand="+" ref_description="SGN-E612686 [62451]">
      <seq>ggctaagatcaagtgtagtatctgttcttattagtttaatatctgatatgtgggccattggtccacacgatattaactcaattttttaagggggagagtccattaaggtagcttgctacctgggctctcgagcgtcgcccatgcgttgcactactgcacgggcctggcgcaccccaccaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="25027" stop="24248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24727" g_stop="24549" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="181" polyA_stop="197"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E612686" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24727" e_stop="24549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAG-GGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAA</genome_strand>
        <mrna_strand>GGCTAAGATCAAGTGTAGTATCTGTTCTTATTAGTTTAATATCTGATATGTGGGCCATTGGTCCACACGATATTAACTCAATTTTTTAAGGGGGAGAGTCCATTAAGGTAGCTTGCTACCTGGGCTCTCGAGCGTCGCCCATGCGTTGCACTACTGCACGGGCCTGGCGCACCCCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280203" ref_strand="+" ref_description="SGN-E280203 [cLEL-7-F23](-)">
      <seq>caagatctatattttgaaaacctgaaattctcatctctttttcctcattaccaccacctaatgccatgatttttttttttttgttaatttaaaaaaaaaaaaaaagaaaccctaaccctatgtctaatgttatgtgggtgggtgtgaaattgaagtaatgaaaggaggatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37013" stop="36241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36713" g_stop="36541" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E280203" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36713" e_stop="36541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCTATATTTTGAAAACCTGAAATTCTCATCTCTTTTTCCTCATTACCACCACCTAATGCCATGATTTTTTTTTTTTTGTTAATTTAAAAAAAAAAAAAAAGAAACCCTAACCCTATGTCTAATGTTATGTGGGGGGGTGTGAAATTGAAGAAATGAAAGGAGGATGGG</genome_strand>
        <mrna_strand>CAAGATCTATATTTTGAAAACCTGAAATTCTCATCTCTTTTTCCTCATTACCACCACCTAATGCCATGATTTTTTTTTTTTTGTTAATTTAAAAAAAAAAAAAAAGAAACCCTAACCCTATGTCTAATGTTATGTGGGTGGGTGTGAAATTGAAGTAATGAAAGGAGGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413965" ref_strand="-" ref_description="SGN-E413965 [STM-18-P11]">
      <seq>gaagatcaatttggactactatgccacctcagcctgtcaaaatggcctttggaggtagcgggggaggaagtggggcaacagactcatcaagtgaagaacttaatttcaatacatatcatcatcaacaagcaacatcggtacatccacaacaaccatttatgttggctaagaaaagatttaggacaaaatttagtcaagaacaaaaggaaaaaatgttggaatttgctgaaaaattaggttggagaattccaagagaagatgatactgaagtacaaagattctgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaatccttcttctgctaaaaaaaacataatacaagaagatccacccttaattaattttatttaattaaggttttgggggaaaaaaatgaaatgaaatttcttgggatttggtttctgcttatgtaatcttactaggaatcgtacgtagctagttttttttttttttttggtctatgtagcattattgtaactatatggaacctcttaattagatttttatttttatcaagtgttgtactttggaacctttattcatctgagaaaaatcagctatttcttccaaaaaaaaaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="36834" stop="38836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37134" g_stop="37187" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37188" i_stop="37965" i_length="778">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37966" g_stop="38533" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="616" r_length="562" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="630"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E413965" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413965" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37134" e_stop="37187"/>
          <exon e_start="37966" e_stop="38533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCAATTTGGACTACTATGCCACCTCAGCCTGTCAAAATGGCCTTCGGAGGTAATGTGTTTAGCTCATCTAAAAATTTTAATGAAATCTCATTTGCTCAATTTGAATTACCATGCCACCTCAGCCTATCAAAATGGGCTTTGGGGGGTTTCGATTTAACATTCGATTATTTCGTCTAATAGTTTAAATTGTGAGACATATTTTTTTTATTTACTTGTACTAATTATTTCATTTTATGTGTCTTTGTTTCACATTGCACTAAATTTAGAAGGTGAATATCTAATTTGAATATTGTGATTTTAAACCTTATTAATCATTTCTTAAAATAGTATCATTAAGAATAATTAGCATCATGAGAATGTTAGATTTCAAAGCTTACTTAAATACTCATATGATAAGATATAAACATACATTACTAGAAATAAATAAAAAAAATTCACCTTGAATTCGTGAGAAATTTGTATTATCGAACTGATTTTTCCACTCATTTTTCACCTAACCAGCTCACGGCCGCGAGAAACACATCTAACTTCCTAATTTTTTCGCGAGAAAATGTTCTGGTCATTCCTTACTAATTCAATCAAAATATCTCTAAATATTTCTCCATGAAAGAAATAATAATTTTTTAGTAATGATATTTACTGAAGACACAAATTAAAATAAATTATTACGCTTAATTATGTCTTCAACACGTTGTTAGTACCTTTTTGTCGACTCGAACCTAAGACTCTTGATATCATGATGAATCGTATGATAAGTTAAAATCATTAAAGTGAACTATATACCTACATTTTTATTTTTTTATTTACTTAATTATATCTTCAAACAGGTAGCGGCGGAGGAAGTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAACACATATCATCATCAACAAGCAACATCAGTACCTCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAGAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGAT-CAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGG-AAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCTATTTCTT</genome_strand>
        <mrna_strand>GAAGATCAATTTGGACTACTATGCCACCTCAGCCTGTCAAAATGGCCTTTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCGGGGGAGGAAGTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAATACATATCATCATCAACAAGCAACATCGGTACATCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAAAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATACTGAAGTACAAAGATTCTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAATCCTTCTTCTGCTAAAAAAAACATAATACAAGAAGATCCACCCTTAATTAATTTTATTTAATTAAGGTTTTGGGGGAAAAAAATGAAATGAAATTTCTTGGGATTTGGTTTCTGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAG--TTTTTT-TTTTTTTTTT-----GGTCTATGTAGCATTATTGTAACTATATGGAACCTCTTAATTAGATTTTTATTTTTATCAAGTGTTGTACTTTGGAACCTTTATTCATCTGAGAAAAATCAGCTATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417145" ref_strand="+" ref_description="SGN-E417145 [STM-24-H8]">
      <seq>gtggggcaacagactcatcaagtgaagaacttaatttcaatacatatcatcatcaacaagcaacatcggtacatccacaacaaccatttatgttggctaagaaaaagatttaggacaaaatttagtcaagaacaaaaggaaaaaatgttggaatttgctgaaaaattaggttggagaattccaagagaagatgatactgaagtacaaagattctgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaatccttcttctgctaaaaaaaacataatacaagaagatcaaccttaattaattttatttaattaaggttttgggggaaaaaaatgaaatgaaatttcttgggatttggtttctgcttatgtaatcttactaggaatcgtacgtagctagttttttttttttggtctatgtagcattattgtaactatatggaaccctcttaattagatttttatttttattaattgctgtactttggaacctttattcatctgaaaattttcagctatttcttacacttcttttgtcactgaattttagaccactcatgagcccgcttttttagctttcaaggtangggtaaagtttacgtatgcaaattcgatttataaaattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37681" stop="38881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37981" g_stop="38585" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E417145" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37981" e_stop="38585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAACACATATCATCATCAACAAGCAACATCAGTACCTCCACAACAACCATTTATGTTGGCTAAG-AAAAGATTTAGGACAAAATTTAGTCAAGAACAGAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGG-AAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAA-CCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCTATTTCTTACACTTCTCTTGTCACTGAAATTTAGACCACTCATGATGCCGCTTTATCGAG</genome_strand>
        <mrna_strand>GTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAATACATATCATCATCAACAAGCAACATCGGTACATCCACAACAACCATTTATGTTGGCTAAGAAAAAGATTTAGGACAAAATTTAGTCAAGAACAAAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATACTGAAGTACAAAGATTCTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAATCCTTCTTCTGCTAAAAAAAACATAATACAAGAAGATCAACCTTAATTAATTTTATTTAATTAAGGTTTTGGGGGAAAAAAATGAAATGAAATTTCTTGGGATTTGGTTTCTGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAG------TT-TTTTTTTTTT-----GGTCTATGTAGCATTATTGTAACTATATGGAACCCTCTTAATTAGATTTTTATTTTTATTAATTGCTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCTATTTCTTACACTTCTTTTGTCACTGAATTTTAGACCACTCATGAGCCCGCTTT-TTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440597" ref_strand="+" ref_description="SGN-E440597 [cSTA-17-B16]">
      <seq>gtggggcaacagactcatcaagtgaagaacggaatttcaatacatatcatcatcaacaagcaacatcggtacatccacaacaaccatttatgttggctaagaaaagatttaggacaaaatttagtcaagaacaaaaggaaaaaatgttggaatttgctgaaaaattaggttggagaattccaagagaagatgatactgaagtacaaagattctgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaatccttcttctgctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37681" stop="38572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37981" g_stop="38272" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E440597" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37981" e_stop="38272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAACACATATCATCATCAACAAGCAACATCAGTACCTCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAGAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAA</genome_strand>
        <mrna_strand>GTGGGGCAACAGACTCATCAAGTGAAGAACGGAATTTCAATACATATCATCATCAACAAGCAACATCGGTACATCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAAAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATACTGAAGTACAAAGATTCTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAATCCTTCTTCTGCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440598" ref_strand="+" ref_description="SGN-E440598 [cSTA-17-B18]">
      <seq>gtggggcaacagactcatcaagtgaagaacgtaatttcaatacatatcatcatcaacaagcaacatcggtacatccacaacaaccatttatgttggctaagaaaagatttaggacaaaatttagtcaagaacaaaaggaaaaaatgttggaatttgctgaaaaattaggttggagaattccaagagaagatgatactgaagtacaaagattctgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaatccttcttctgctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37681" stop="38570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37981" g_stop="38270" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E440598" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37981" e_stop="38270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAACACATATCATCATCAACAAGCAACATCAGTACCTCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAGAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAA</genome_strand>
        <mrna_strand>GTGGGGCAACAGACTCATCAAGTGAAGAACGTAATTTCAATACATATCATCATCAACAAGCAACATCGGTACATCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAAAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATACTGAAGTACAAAGATTCTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAATCCTTCTTCTGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226155" ref_strand="+" ref_description="SGN-E226155 [cLEL-31-K16](-)">
      <seq>atgctgaagtacaaagattttgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaacccttcttctgctaaaaaaaatataatacaagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37873" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38173" g_stop="38526" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="381"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E226155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38173" e_stop="38526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226059" ref_strand="+" ref_description="SGN-E226059 [cLEL-31-K16](-)">
      <seq>aagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37981" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38281" g_stop="38526" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="273"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E226059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38281" e_stop="38526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>AAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392956" ref_strand="+" ref_description="SGN-E392956 [TUS-37-C15]">
      <seq>tttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcacatccctctctaactcaacaagtgttcaacgccacgcttaanaacaaggcgggaaaatgctatgttcaaacaggggataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41731" stop="40524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41431" g_stop="40824" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E392956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41431" e_stop="40824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</genome_strand>
        <mrna_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAANAACAAGGCGGGAAAATGCTATGTTCAAACAGGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242735" ref_strand="+" ref_description="SGN-E242735 [cLED-31-A22]">
      <seq>ttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41730" stop="40603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41430" g_stop="40903" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E242735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41430" e_stop="40903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACA</genome_strand>
        <mrna_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242712" ref_strand="+" ref_description="SGN-E242712 [cLED-31-E11]">
      <seq>ttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41730" stop="40646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41430" g_stop="40946" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E242712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41430" e_stop="40946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAA</genome_strand>
        <mrna_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349426" ref_strand="+" ref_description="SGN-E349426 [cTOS-1-P5]">
      <seq>ttctaatgttagtttacagcagcagatattgtcaatgcagcagcagcaacaacaacaacatcagcagttcttggatcctattaatgggattcttaatgttgggagctaagtgatttaagggtctaaggatgcgaacaaccaagctaaataatttaaggggctaaggatgcaaaccaagcttaagtatgaatctggtggaatttaagagcttgctaattggaaaagagcgggtccaatgaagacacactaagttatgcctttcatattctcaacatgtactgcacacgtttattccatctacgtttatattaaaattttgtgtatacacattcttgaaataaaggttgaaaaatgaaacataaaagtattgaagtgaaaatctttcttatttggttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="45808" stop="43478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45508" g_stop="45407" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45406" i_stop="44073" i_length="1334">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44072" g_stop="43779" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="396" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E349426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45508" e_stop="45407"/>
          <exon e_start="44072" e_stop="43779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGGGTATGTTTCTCTTTCGTGTCTAGTTTACCATTAATCGTTCAGTAATTGTCATGTATCTTTCCAGAGTTTTTCCATGTATGTTCATTGCATTTTCAATAGTATGTAATGATGGTTATCGGTAGGGGAAAGTTAGTCGATTACTCTCAGGTAAAACATGTCATGCAATAGTTTAGTTACAGAGTGGTTCGGTTAACCTCAATGTAGTAATACTTCGTTAGTGAAAAGCCTGAAAATGAAAAGAAAAGAAAAAAGTAAGGAAAGCAGTTGCTCTTCATCTAAATATCCTGAATATGATTGTCCTATCTTCAAAAACTCTTGAGTTTGTCTTTTTCCAAACTGTCCGCCATTTGCAAGCAGGAACCAATCTCCACGCTTTCTTGTCTAACTCTACCTCCCAAACTGTTCTAGCTCTTAGGAAGATCCACAGTGCTTGCAGGAACCACTCTCGATTATTTGATCCCCACCAAATTAAGAAAGAGCTGTCACAATTGATAAGTAAAAGAACAATGAAGAAACAAATGGCTATTAGTTTCTGTGTTAGACTCAGAGAACAAACATATGGAACATAACTGGAATCCTCTTCTTCTCAACCTTTCTTGAGTCAAAGCTGCCTTTCTAGATACCAACCAGGTGAAAAACAGAACCTTTGGACTTTGGAGGGGCATTATAAAATTATATGGCCAATCAATATTCTGATAAGCTTAATTTGTGATTGCTAAATTGGCAAACATGACTGTGAAAGTCCCATCTTTGCTTGGATTCCAATAGAATTTGTCCGCTGCTTCTGATAGCCCCTAAAGCTCCTCCAAAGTTTTAAAGAACTCTACTGCTCCTTTAATGATATCTGATGGATCTTCACATCCCTACTCCATCAGGACTGTTAACAGGATCTGTGTACCAAATCCCTTCCTGACTATTTGTCAAGAATTACCCTTCTCCATTAACTGTCCTCTTCCTTAGTTTACCTCCATATCCATTTCATCCGTCGACATGTATTTTGAACATTTATGTCCTTAATTACCAGACCCCTTTTTCAATTTCAAAACTTCCTCCAAACTAGTTCAGGGCTGAGCTTTGTCAAACCTTTTCTGGTTTAAGGTGCTAGTTTGTAATATTATATTACCATGTCAACCAAAAAAGAAAAAGAGGTGCTACTTACTCTAATCCCTTTGAGCTAAATAACTTTGCCATGACTTTCAGTGACTCCAATATCATGCCTATAATTATGGAAGTATTAACTATGTTCTTAATTCTAATGAGCAAGTAAGCATTTCTTTTCCCAATGAAGTTGTAATGCAAAAGTAAACACCATTGATTGAATTTCCCATATTCAGGAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</genome_strand>
        <mrna_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410520" ref_strand="+" ref_description="SGN-E410520 [PPI-17-C24]">
      <seq>gaagaatcagaatctgcatctgaacccaaccctaacacccccaccctaacaaatcccccttctaccgacgccattaatgttgtacctcttcaagctcattcaccacccaccaagcttccttctcgacccagaaaaacccggaagctttccaatactgttgatccctcgctacccaaaacccagatttccaccatcgtaccaagaatcgtttctcgttcactttcatatgaaggtgagcttgaatccgccattaattacctcaaatcctccgacccattactctctccattaattgaaacatacccacttcctaccctcgaactttttcaacccccttttcttgctctaacaaaaagcattctgtttcagcagctagcgtataaagctgggtcatcgatttacactcgatttatatctctttgtggtggggaatcgaatgtggtgccagatatggttttgggattaacaccacaacagcttcgtcaaattggggtttctgctagaaaagcaagctatttacatgacctagcaaggaagtatcaaaatgggattttgtcggataagtcgattgtggatatggatgataaatccctttttacaatgcttactatggtgaatggaattgggtcttggtcagttcatatgtttatgattttttcacttcataggccggatgtgttgccgatacatgatcttagtattaggaaaggggtgagaatgttatatggtcttgaggatcttcctaggccatcacagatggatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="46674" stop="45309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46374" g_stop="45609" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E410520" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46374" e_stop="45609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATCAGAATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCTCGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCTGTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCGGATATGGTTTTGGGATTAACCCCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCGCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGATTTTTTCACTTCATAGGCCGGATGTGTTGCCGATACATGATCTTGGTATTAGGAAAGGGGTGAGAATGTTATATGGTCTTGAGGATCTTCCTAGGCCATCACAAATGGATCAGT</genome_strand>
        <mrna_strand>GAAGAATCAGAATCTGCATCTGAACCCAACCCTAACACCCCCACCCTAACAAATCCCCCTTCTACCGACGCCATTAATGTTGTACCTCTTCAAGCTCATTCACCACCCACCAAGCTTCCTTCTCGACCCAGAAAAACCCGGAAGCTTTCCAATACTGTTGATCCCTCGCTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATCGTTTCTCGTTCACTTTCATATGAAGGTGAGCTTGAATCCGCCATTAATTACCTCAAATCCTCCGACCCATTACTCTCTCCATTAATTGAAACATACCCACTTCCTACCCTCGAACTTTTTCAACCCCCTTTTCTTGCTCTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCAGATATGGTTTTGGGATTAACACCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCCCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGATTTTTTCACTTCATAGGCCGGATGTGTTGCCGATACATGATCTTAGTATTAGGAAAGGGGTGAGAATGTTATATGGTCTTGAGGATCTTCCTAGGCCATCACAGATGGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457753" ref_strand="+" ref_description="SGN-E457753 [cPRO-3-J19]">
      <seq>gaagaatcagaatctgcatctgaacccaaccctaacacccccaccctaacaaatcccccttctaccgacgccattaatgttgtacctcttcaagctcattcaccacccaccaagcttccttctcgacccagaaaaacccggaagctttccaatactgttgatccctcgctacccaaaacccagatttccaccatcgtaccaagaatcgtttctcgttcactttcatatgaaggtgagcttgaatccgccattaattacctcaaatcctccgacccattactctctccattaattgaaacatacccacttcctaccctcgaactttttcaacccccttttcttgctctaacaaaaagcattctgtttcagcagctagcgtataaagctgggtcatcgatttacactcgatttatatctctttgtggtggggaatcgaatgtgatgccagatatggttttgggattaacaccacaacagcttcgtcaaattggggtttctgctagaaaagcaagctatttacatgacctagcaaggaagtatcaaaatgggattttgtcggataagtcgattgtggatatggatgataaatccctttttacaatgcttactatggtgaatggaattgggtcttggtcagttcatatgtttatgattttttcacttcataggccggatgtgttgccgatacatgatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="46674" stop="45377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46374" g_stop="45677" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E457753" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46374" e_stop="45677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATCAGAATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCTCGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCTGTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCGGATATGGTTTTGGGATTAACCCCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCGCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGATTTTTTCACTTCATAGGCCGGATGTGTTGCCGATACATGATCTTGG</genome_strand>
        <mrna_strand>GAAGAATCAGAATCTGCATCTGAACCCAACCCTAACACCCCCACCCTAACAAATCCCCCTTCTACCGACGCCATTAATGTTGTACCTCTTCAAGCTCATTCACCACCCACCAAGCTTCCTTCTCGACCCAGAAAAACCCGGAAGCTTTCCAATACTGTTGATCCCTCGCTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATCGTTTCTCGTTCACTTTCATATGAAGGTGAGCTTGAATCCGCCATTAATTACCTCAAATCCTCCGACCCATTACTCTCTCCATTAATTGAAACATACCCACTTCCTACCCTCGAACTTTTTCAACCCCCTTTTCTTGCTCTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGATGCCAGATATGGTTTTGGGATTAACACCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCCCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGATTTTTTCACTTCATAGGCCGGATGTGTTGCCGATACATGATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447773" ref_strand="+" ref_description="SGN-E447773 [cSTS-2-I5]">
      <seq>gaagaatcagaatctgcatctgaacccaaccctaacacccccaccctaacaaatcccccttctaccgacgccattaatgttgtacctcttcaagctcattcaccacccaccaagcttccttctcgacccagaaaaacccggaagctttccaatactgttgatccctcgctacccaaaacccagatttccaccatcgtaccaagaatcgtttctcgttcactttcatatgaaggtgagcttgaatccgccattaattacctcaaatcctccgacccattactctctccattaattgaaacatacccacttcctaccctcgaactttttcaacccccttttcttgctctaacaaaaagcattctgtttcagcagctagcgtataaagctgggtcatcgatttacactcgatttatatctctttgtggtggggaatcgaatgtgatgccagatatggttttgggattaacaccacaacagcttcgtcaaattggggtttctgctagaaaagcaagctatttacatgacctagcaaggaagtatcaaaatgggattttgtcggataagtcgattgtggatatggatgataaatccctttttacaatgcttactatggtgaatggaattgggtcttggtcagttcatatgtttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="46674" stop="45423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46374" g_stop="45723" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E447773" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46374" e_stop="45723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATCAGAATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCTCGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCTGTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCGGATATGGTTTTGGGATTAACCCCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCGCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGA</genome_strand>
        <mrna_strand>GAAGAATCAGAATCTGCATCTGAACCCAACCCTAACACCCCCACCCTAACAAATCCCCCTTCTACCGACGCCATTAATGTTGTACCTCTTCAAGCTCATTCACCACCCACCAAGCTTCCTTCTCGACCCAGAAAAACCCGGAAGCTTTCCAATACTGTTGATCCCTCGCTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATCGTTTCTCGTTCACTTTCATATGAAGGTGAGCTTGAATCCGCCATTAATTACCTCAAATCCTCCGACCCATTACTCTCTCCATTAATTGAAACATACCCACTTCCTACCCTCGAACTTTTTCAACCCCCTTTTCTTGCTCTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGATGCCAGATATGGTTTTGGGATTAACACCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCCCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412120" ref_strand="+" ref_description="SGN-E412120 [STM-15-D14]">
      <seq>acgaccttcaatcttgtaaatctccattaacgactttccctgtgctaaaatccctcaattgatctccatttccagtttcctttccttcatccatggctgaagaatcagaatctgcatctgaacccaaccctaacacccccaccctaacaaatcccccttctaccgacgccattaatgttgtacctcttcaagctcattcaccacccaccaagcttccttctcgacccagaaaaacccggaagctttccaatactgttgatccctcgctacccaaaacccagatttccaccatcgtaccaagaatcgtttctcgttcactttcatatgaaggtgagcttgaatccgccattaattacctcaaatcctccgacccattactctctccattaattgaaacatacccacttcctaccctcgaactttttcaacccccttttcttgctctaacaaaaagcattctgtttcagcagctagcgtataaagctgggtcatcgatttacactcgatttatatctctttgtggtggggaatcgaatgtgatgccagatatggttttgggattaacaccacaacagcttcgtcaaattggggtttctgctagaaaagcaagctatttacatgacctagcagggaagtatcaaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="46771" stop="45525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46471" g_stop="45825" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E412120" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46471" e_stop="45825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACCTTCAATCTTGTAAATCTTCATTAACGACTTCCCCTGTG-TTGAATCCCTCAATTGATCACCATTTGCAGTTCTCTTTCCTTCATCAATGGCTGGAGAATCAGAATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCTCGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCTGTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCGGATATGGTTTTGGGATTAACCCCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGA</genome_strand>
        <mrna_strand>ACGACCTTCAATCTTGTAAATCTCCATTAACGACTTTCCCTGTGCTAAAATCCCTCAATTGATCTCCATTTCCAGTTTCCTTTCCTTCATCCATGGCTGAAGAATCAGAATCTGCATCTGAACCCAACCCTAACACCCCCACCCTAACAAATCCCCCTTCTACCGACGCCATTAATGTTGTACCTCTTCAAGCTCATTCACCACCCACCAAGCTTCCTTCTCGACCCAGAAAAACCCGGAAGCTTTCCAATACTGTTGATCCCTCGCTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATCGTTTCTCGTTCACTTTCATATGAAGGTGAGCTTGAATCCGCCATTAATTACCTCAAATCCTCCGACCCATTACTCTCTCCATTAATTGAAACATACCCACTTCCTACCCTCGAACTTTTTCAACCCCCTTTTCTTGCTCTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGATGCCAGATATGGTTTTGGGATTAACACCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAGGGAAGTATCAAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558700" ref_strand="+" ref_description="SGN-E558700 [18082]">
      <seq>aatctgcatctgaacccaaccctaggacccccaccctaacaaatcccccttctaccgacgccattaatgttgtacctcttcaagctcattcaccagccaccaagcttccttctccgacccagaaaaacccggaagctttccaatactattgatccctcggctaccaaaacccagatttccaccatcgtaccaagaatcgtttctcgttcactttcatatgaaggtgagcttgaatccgccattaattacctcaaatcctccgacccattactctctccattaattgaaacatacccacttcctaccctcgaactttttcaacccccttttcttgctctaacaaaaagcattctgtttcagcagctagcgtataaagctgggtcatcgatttacactcgatttatatctctttgtggtggggaatcgaatgtggtgccagatatggttttgggattaaacaccacaacagttcgtcaaaattggggtttctgctagaaaaaagcaagctatttacaatgaccctagcaaggaagtatccaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="46664" stop="45525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46364" g_stop="45825" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E558700" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46364" e_stop="45825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCT-CGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCT-GTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCGGATATGGTTTTGGGATT-AACCCCACAACAGCTTCGTC-AAATTGGGGTTTCTGCTAG--AAAAGCAAGCTATTTAC-ATGA-CCTAGCAAGGAAGTATCAAAATGGGA</genome_strand>
        <mrna_strand>AATCTGCATCTGAACCCAACCCTAGGACCCCCACCCTAACAAATCCCCCTTCTACCGACGCCATTAATGTTGTACCTCTTCAAGCTCATTCACCAGCCACCAAGCTTCCTTCTCCGACCCAGAAAAACCCGGAAGCTTTCCAATACTATTGATCCCTCGGCTA-CCAAAACCCAGATTTCCACCATCGTACCAAGAATCGTTTCTCGTTCACTTTCATATGAAGGTGAGCTTGAATCCGCCATTAATTACCTCAAATCCTCCGACCCATTACTCTCTCCATTAATTGAAACATACCCACTTCCTACCCTCGAACTTTTTCAACCCCCTTTTCTTGCTCTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCAGATATGGTTTTGGGATTAAACACCACAACAG-TTCGTCAAAATTGGGGTTTCTGCTAGAAAAAAGCAAGCTATTTACAATGACCCTAGCAAGGAAGTATCCAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470086" ref_strand="+" ref_description="SGN-E470086 [cSTB-16-N18]">
      <seq>acgaccttcaatcttgtaaatctccattaacgactttccctgtgctaaaatccctcaattgatctccatttccagtttcctttccttcatccatggctgaagaatcagaatctgcatctgaacccaaccctaacacccccaccctaacaaatcccccttctaccgacgccattaatgttgtacctcttcaagctcattcaccacccaccaagcttccttctcgacccagaaaaacccggaagctttccaatactgttgatccctcgctacccaaaacccagatttccaccatcgtaccaagaatcgtttctcgttcactttcatatgaaggtgagcttgaatccgccattaattacctcaaatcctccgacccattactctctccattaattgaaacatacccacttcctaccctcgaactttttcaacccccttttcttgctctaacaaaaagcattctgtttcagcagctaacgtataaagctgggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="46771" stop="45680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46471" g_stop="45980" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E470086" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46471" e_stop="45980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACCTTCAATCTTGTAAATCTTCATTAACGACTTCCCCTGTG-TTGAATCCCTCAATTGATCACCATTTGCAGTTCTCTTTCCTTCATCAATGGCTGGAGAATCAGAATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCTCGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCTGTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATC</genome_strand>
        <mrna_strand>ACGACCTTCAATCTTGTAAATCTCCATTAACGACTTTCCCTGTGCTAAAATCCCTCAATTGATCTCCATTTCCAGTTTCCTTTCCTTCATCCATGGCTGAAGAATCAGAATCTGCATCTGAACCCAACCCTAACACCCCCACCCTAACAAATCCCCCTTCTACCGACGCCATTAATGTTGTACCTCTTCAAGCTCATTCACCACCCACCAAGCTTCCTTCTCGACCCAGAAAAACCCGGAAGCTTTCCAATACTGTTGATCCCTCGCTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATCGTTTCTCGTTCACTTTCATATGAAGGTGAGCTTGAATCCGCCATTAATTACCTCAAATCCTCCGACCCATTACTCTCTCCATTAATTGAAACATACCCACTTCCTACCCTCGAACTTTTTCAACCCCCTTTTCTTGCTCTAACAAAAAGCATTCTGTTTCAGCAGCTAACGTATAAAGCTGGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475772" ref_strand="+" ref_description="SGN-E475772 [cSTB-41-B8]">
      <seq>catttttcctatctcaagtcttctttaagtatatcctctattttaatttaatacccttttcagattaacatcattcttgctaattccagtattttcaacaacttcctttttcttgatctatagttcaaatttcaagaactatagagaaaaggggttgactcaaaatttgaaaaaaaaatgagtttcagagaagagaacaatgaaggggatctgaaaaagccatttttacatactggaagttggtatcgtatggggtcaagacagtctagtatgatgggttcttctcaagctattcgtgatagttctatttctgttcttgcttgtgttctcatagttgctttgggcccaatccagtttggtttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="33813" stop="54072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53404" g_stop="53772" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E475772" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53404" e_stop="53772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTCCTTATCTCAAGTCTTCTTTAAGTATAT---CTATTTTAATTAAATACTCTTTTCAGATTAACATCAACATTCTTGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCAC</genome_strand>
        <mrna_strand>CATTTTTCC-TATCTCAAGTCTTCTTTAAGTATATCCTCTATTTTAATTTAATACCCTTTTCAGATTAACAT---CATTCTTGCTAATTCCAGTATTTTCAACAACTTCCTTTTTCTTGATCTATAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTT---GAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGAAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745429" ref_strand="+" ref_description="SGN-E745429 [GI|47105649]">
      <seq>ggctaattccagtattttcaacaacttcatttttcttgatctgtagttcaaatttcaagaactatagagaaaaggggttgactcaaaatttgaagaaaaaaaaatgagtttcagagaagagaacaatgaaggggatctgaaaaagccatttttacatactgggagttggtatcgtatggggtcaagacagtctagtatgatgggttcttctcaagctattcgtgatagttctatttctgttcttgcttgtgttctcatagttgctttgggcccaatccagtttggtttcacttgtggctacacttcaccaacgcaaattgcaattaccaaagatctgaagctcactgtttctgagttctctttgttcggttctttatccaatgtgggtgctatggttggtgcaatatctagtggtcaaatttctgagtacattgggcgaaaagggtctttaatgatagctgctataccaaatatcattggttggcttgccatctcatttgccaaagatccttcttttctatacatgggaagattgttggagggctttggtgtgggaataatctcttatgtggttcctgtatatattgctgagattgcacctcagaatatgagagggggtctagggtctgttaaccagctctctgttacaattgggatcatgttgtcctatttactgggactttttgttaattggaggctgcttgctgttcttggagcattaccttgcctagcactgatacctggactatttttcatccccgaatctcctcggtggttggccaaaatgggtttaacagaagattttgaaacttcgttgcaagttcttcgaggctttgaggctgatattaccaatgaagtaaatgaaattaagaggtctgtagcatcatcaacaaaccgaagaacagcaatgcgttttgcggatctcaaacatagaagatattggtttcctctcatggtaggaattggactacttatcctgcaacagttaggaggaatcaacggtgttatattctattccagcaacattttcctatctgccggtatttcgtcaagtaatgctgcaacttttggtgtcggtgctatacaggttgttgcaactgcagtttctacatggctggtggacagaactggacgtagaattttattaattgtttcctcggctggaatggctgttagtcttcttattgtctccgttgccttctatctaaagggttatgtatctgaggattctaccctctatggtgtcttgggaatagtgtccgtagttggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcaatttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattcaatttaaaataaagtgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="53183" stop="59599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53482" g_stop="53773" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53774" i_stop="54760" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54761" g_stop="54823" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="355" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54824" i_stop="54902" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54903" g_stop="54992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="55093" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55094" g_stop="55153" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55154" i_stop="55256" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55257" g_stop="55322" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55323" i_stop="55422" i_length="100">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55423" g_stop="55488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55489" i_stop="55580" i_length="92">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55581" g_stop="55656" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55657" i_stop="56329" i_length="673">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56330" g_stop="56394" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="778" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="56395" i_stop="56483" i_length="89">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="56484" g_stop="56576" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="871" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="56685" g_stop="56768" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="955" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86">
            <donor d_prob="0.025" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="56855" g_stop="56939" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1040" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="57532" g_stop="57578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1087" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="57729" g_stop="57791" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="57873" g_stop="57932" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1210" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95">
            <donor d_prob="0.512" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="58028" g_stop="58093" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="58188" g_stop="58247" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1336" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="58543" g_stop="58657" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1337" r_stop="1451" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="58937" g_stop="59290" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1452" r_stop="1805" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1806" polyA_stop="1825"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E745429" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1805</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53482" e_stop="53773"/>
          <exon e_start="54761" e_stop="54823"/>
          <exon e_start="54903" e_stop="54992"/>
          <exon e_start="55094" e_stop="55153"/>
          <exon e_start="55257" e_stop="55322"/>
          <exon e_start="55423" e_stop="55488"/>
          <exon e_start="55581" e_stop="55656"/>
          <exon e_start="56330" e_stop="56394"/>
          <exon e_start="56484" e_stop="56576"/>
          <exon e_start="56685" e_stop="56768"/>
          <exon e_start="56855" e_stop="56939"/>
          <exon e_start="57532" e_stop="57578"/>
          <exon e_start="57729" e_stop="57791"/>
          <exon e_start="57873" e_stop="57932"/>
          <exon e_start="58028" e_stop="58093"/>
          <exon e_start="58188" e_stop="58247"/>
          <exon e_start="58543" e_stop="58657"/>
          <exon e_start="58937" e_stop="59290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACTGTAATTTCTCATTTCTCATTCAACTTCTTTACTTTGCTTTGTTTTTATGTATATGTATGTTTATCTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGAGAGTTTTTTGGGATAAAAATGGAGTCTTTAGCTTGTTTTGTTGTGGTAAAGGATTCATAATTGGGGTTGATGAGGTGATAACCAATTCAATATTGATCACATGTCTGTTTATTTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGATAAAGTTTTTTGAAAAAAAATGAAGTCTTAAGCCTCCTTTGATATGATGAATGATTCATAATTGGGGTTGATGAGGTGGTAAACAATTCAATATTGACCATATGTATGTTTACCTGCCTATTATCCTGTTAGAAGCTTCAAGTTTGATGAGAAAAGATAGTTTTTTGGAATAAAAATGAAGTCTTTAGTCTCTTTTGTTGTTGTAAAGGATTCACAGTTGGGGTAAGAGGTTGCATATATTGTTGGGATTTACAATATGTTATGCCATTCAGATTTTTCTGGTGGATGACGTAACAATTCAATATTGACTACATGTTTGTTTACCTTTCCAATAACCTATGAGAAATTTCAAGAGTTGATTTCTCATATGGTCAATCAATAGAAAGTCATTTGTTTTATTGAAAAAAATTGTGAATCAAGAAGAGAAGGACTTATTGAGATTATAACTATTGTTGAGTGACCATATGAGAATTTACATGAAACTTCATATTTGATTGAAGAGGATAAGTTTGAATAAAAATAGGCTTAAGCTTCTTCATTTTTGTGGTTAAGGGATCAAAAGTGGTATTAAAAAAATGTAGCATCTTTATTCAGATTACAGTTTGTCATGTCATTCTTATTGTGCCTGCAGTTTATTGGCTGCTTACACGATTTATGTTGCTGCAACAAATATTTGCATATATATCTCTATTGATCAGGTGTTTGTTTTTGTTGCATTTGAAGTGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAGGTCTGCAAGAGTCATTCTTGATTTATATCTAATTTAAGTTTGTTTCAGAGCCATTGTTGACTAAAGATAATCTTTTCAGTTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGGGTAAGATTATTGCATTAAAAATGATGTCTAGTTTTTTCATTTACCATATTTCTGTGTATTGCTGAAGTGGATGCTCAAATCCTTTTTTTTTCCTACTGCAGTCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAAGTAAGATATTCTACCTGAAGTATATTATATGGTGCCTCGATAATCTACATTGACATGTATGTGCTTATATCTCCCTTCCTTTGGCCTTACCAATATGTTTCAGGATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTGGTAATGTTCAATTTCTTAAATCTTCTCTGGTTACAGTGATTGACTACACCGAAATTCTCAAAACTAAATGCTTTCGCTTCCTGCTTTTTGGTGTTTTTAGGTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAGGTTCGCGGAGTTATAGACTTATTTTTCGTTAAAACCAAAGTTTGCTATGCCTGCTTAATCAATCACATGCTATCATTTGTTTCTTAATGTAGCTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTGGTAATGATCATTTCTCTTGAAAACTCTTGTTAAGCTACAATTTACAGTTATGAAGTCATAAATCATTTTTTACTCTACTGAATAACATTTAGTGCATAAATAATAAACTAGTCAATTAAGTTGAAGTGATAGCTTTTCATTTTGTGAGGACTGAGAATAGTTATTGAGTTCTTCTTTGGCTGATATCTGCACAGCTTCTCTTTATTCTTGTAGATTTACGTTGTCAAGCGTAAGCGCTTTCCTGCTCCCTGACTTAAGACTTGTGTTTTGTTAGTTGAGCAGTATTTCTGTTTTAAAATGACATTCCTTTTCTTCTTAATGACGGTGTTGGTGGGGGCAGTTTGGGTACCTACTGCCTCCCACCAACACATGTAACGTATAACTTTTCCAACCAAGGCTTAGGAGATGGGACGTAACGACATCGAGTTTCTTTTGCCTCTGTTGGGATTGAACCTGAGACCTCATGGTTCTTCTCCTACTTCATTGACCACTAGTCCACATCACTGTGCTTCCAAAATGACAGTCTTCATTCGCATAATTTTATAAAAAAAATATTTTTCCTTTTGTGCTTTTGGTGGAGAGGGCTATGTGTCTTCTTCTTCTTCTTCTTACACTTACATAAGAGTTTCCGGATTGAATTTTGAAAGAGCTGGTATATTATTTTCTTTTATAGGAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTGGTGAGCTTCATTATATATATATTTCTTTGTGTAATTCTTCAAGGCTTTGATTGCTGTTTGTCTCAGTTGAGTTTCTATCATAAATATAGGCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAGGTAAATTGTATGAAAGACTATATAAAGCAAGCCTTGTTGCCACACATGAAATTCGGTATAAAACTTGTTGTTAAATTTGTATTTATTTTATGTTATTTTTGCGTATAGAGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATGGTATTTTGACGTTTCATGCTGTTATTGGAGCCTTCGTGTTAGTTATGCCCTTGTTTCGTCAATCTTCTAATTTTTCATTCTTTTAGGTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCGGTACGGATTAAACAAACAGTTGCAACTTGTCATCTTAAATGATGGATGTGTCAGTAGCATTTGCCTTCTTCAAAAGAAGTGTCATTTTCAGCCTGTCATGTAGCATCTACCTTTTTGTTATGATCCATTGCTGGCAAAATTGAATTGCATTATAATTTTGCCTCAAGAGAACCCCTGAAACAAACTAATTGATTAAGATTGATACACGAGTTATTTAAATGGCATAATACATAAACAAACACTCAAATATGGCCCCAACTGGCAAGTACGCACTCCAACTTTGAGAGTATACATCTAGACACCTCACCTGGCATCTAAACACTCCAACTTGTCCTCATTGTCTGGTGGACACCTGACACTAATGTCGCACATAAAGTTAGAAGTGTCTAGATTGTACGTTTGAGTTCAACTGACATGGCGGAGACGAGTTGAGATGTCTAGATGTGGATACTCAAAGTTGGAGTGTTTAGTTGTTAGTTTAGACCAAGTTAAAGTGTCTATCTATGTATTATGTCTATTTAAATCTATAATGATCTATGACTTTCTTCGTGTAATATAAGTCTTCACTAATTTAGTCATCTAAACTTCACAGGTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAGGTCCAGCTTTTGCTATTTTAGTTTCTCTTCTTTAACTTTCAAGTATGCATATTATTTAGGATGGAAGGTGAAAAGGTTTCGATTTCTGTGTAGCACTTGCTTGCATTACTTTTGTGCTGTCAAATTTCATCAATGTCCTTCAATGTGCAGGTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATTGTAAGTTTTAAAAAGTCATGACGTATATGTAGATTGTTCTAATTTTTGTGCTAACTTATTAAAGCAAATGCTCTTTTGTAGGTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</genome_strand>
        <mrna_strand>GGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG...............................................................................TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG.....................................................................................................TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA.......................................................................................................GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG....................................................................................................GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG............................................................................................CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG.........................................................................................GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG............................................................................................................AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG......................................................................................GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG......................................................................................................................................................GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT.................................................................................GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596656" ref_strand="+" ref_description="SGN-E596656 [40143]">
      <seq>cgagggtttgaggctgacattaccaatgaagtaaatgaaattaagaggtctgtagcatcatcaacaaaccgaagaacagcaatgcgtttcgcggatctcaaacataggagatattggtttcctctcatggtaggaattgggctacttatcctgcaacagttaggaggaatcaacggtgttatattctattccagcaacattttcctatctgccggtatttcttcaagtaatgctgcaacttttggtgttggtgctatccaggttgttgcaactgcagtttctacatggctggtggatagaactggacgtagaattttattaattgtttcctctgctggaatgactgttagtcttctaattgtctccgttgccttctatctaaagggttatgtatctgaggattccaccctctatggtgtattgggaataatatcagtagtcggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgtccgtggcaatttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="56232" stop="59297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56532" g_stop="56576" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56685" g_stop="56768" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="129" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86">
            <donor d_prob="0.025" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56855" g_stop="56939" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="214" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57532" g_stop="57578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="261" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57729" g_stop="57791" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81">
            <donor d_prob="0.722" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57873" g_stop="57932" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="384" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95">
            <donor d_prob="0.512" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58028" g_stop="58093" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="450" r_length="66" r_score="0.909"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94">
            <donor d_prob="0.759" d_score="0.88"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58188" g_stop="58247" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="510" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="58543" g_stop="58657" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="625" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="58937" g_stop="58997" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="686" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E596656" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56532" e_stop="56576"/>
          <exon e_start="56685" e_stop="56768"/>
          <exon e_start="56855" e_stop="56939"/>
          <exon e_start="57532" e_stop="57578"/>
          <exon e_start="57729" e_stop="57791"/>
          <exon e_start="57873" e_stop="57932"/>
          <exon e_start="58028" e_stop="58093"/>
          <exon e_start="58188" e_stop="58247"/>
          <exon e_start="58543" e_stop="58657"/>
          <exon e_start="58937" e_stop="58997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAGGTAAATTGTATGAAAGACTATATAAAGCAAGCCTTGTTGCCACACATGAAATTCGGTATAAAACTTGTTGTTAAATTTGTATTTATTTTATGTTATTTTTGCGTATAGAGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATGGTATTTTGACGTTTCATGCTGTTATTGGAGCCTTCGTGTTAGTTATGCCCTTGTTTCGTCAATCTTCTAATTTTTCATTCTTTTAGGTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCGGTACGGATTAAACAAACAGTTGCAACTTGTCATCTTAAATGATGGATGTGTCAGTAGCATTTGCCTTCTTCAAAAGAAGTGTCATTTTCAGCCTGTCATGTAGCATCTACCTTTTTGTTATGATCCATTGCTGGCAAAATTGAATTGCATTATAATTTTGCCTCAAGAGAACCCCTGAAACAAACTAATTGATTAAGATTGATACACGAGTTATTTAAATGGCATAATACATAAACAAACACTCAAATATGGCCCCAACTGGCAAGTACGCACTCCAACTTTGAGAGTATACATCTAGACACCTCACCTGGCATCTAAACACTCCAACTTGTCCTCATTGTCTGGTGGACACCTGACACTAATGTCGCACATAAAGTTAGAAGTGTCTAGATTGTACGTTTGAGTTCAACTGACATGGCGGAGACGAGTTGAGATGTCTAGATGTGGATACTCAAAGTTGGAGTGTTTAGTTGTTAGTTTAGACCAAGTTAAAGTGTCTATCTATGTATTATGTCTATTTAAATCTATAATGATCTATGACTTTCTTCGTGTAATATAAGTCTTCACTAATTTAGTCATCTAAACTTCACAGGTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAGGTCCAGCTTTTGCTATTTTAGTTTCTCTTCTTTAACTTTCAAGTATGCATATTATTTAGGATGGAAGGTGAAAAGGTTTCGATTTCTGTGTAGCACTTGCTTGCATTACTTTTGTGCTGTCAAATTTCATCAATGTCCTTCAATGTGCAGGTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATTGTAAGTTTTAAAAAGTCATGACGTATATGTAGATTGTTCTAATTTTTGTGCTAACTTATTAAAGCAAATGCTCTTTTGTAGGTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGT</genome_strand>
        <mrna_strand>CGAGGGTTTGAGGCTGACATTACCAATGAAGTAAATGAAATTAAG............................................................................................................AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTCGCGGATCTCAAACATAGGAGATATTGGTTTCCTCTCATG......................................................................................GTAGGAATTGGGCTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTTCAAGTAATGCTGCAACTTTTGGTGTTGGTGCTATCCAG......................................................................................................................................................GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGATAGAACTGGACGTAGAATTTTATTAATT.................................................................................GTTTCCTCTGCTGGAATGACTGTTAGTCTTCTAATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCCACCCTCTATGGTGTATTGGGAATAATATCAGTAGTCGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTCCGTGGCAATTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606354" ref_strand="+" ref_description="SGN-E606354 [22295]">
      <seq>cctcggctggaatgactgttagtcttctaattgtctccgttgccttctatctaaagggttatgtatctgaggattctaccctctatggtgtattgggaataatatcagtagtcggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcattcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaaatcttttttccccaactgttctttgtgatcccttngtttctttttgtcacaaactcaatttcccttgtgcaaaagtttcaatttttcacatatatagggaagtatgagttgaacatgctgcttcagagtgtgtacatttcatcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="57577" stop="59499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57877" g_stop="57932" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95">
            <donor d_prob="0.512" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58028" g_stop="58093" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="122" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94">
            <donor d_prob="0.759" d_score="0.90"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58188" g_stop="58247" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="182" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58543" g_stop="58657" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="297" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58937" g_stop="59183" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="544" r_length="247" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E606354" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57877" e_stop="57932"/>
          <exon e_start="58028" e_stop="58093"/>
          <exon e_start="58188" e_stop="58247"/>
          <exon e_start="58543" e_stop="58657"/>
          <exon e_start="58937" e_stop="59183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGAT-CCTTTG-TTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGT</genome_strand>
        <mrna_strand>CCTCGGCTGGAATGACTGTTAGTCTTCTAATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTATTGGGAATAATATCAGTAGTCGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCATTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAA-ATCTTTTTTCCCCAACTGTTCTTTGTGATCCCTTNGTTTCTTTTTGTCAC-AAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGTATGAGTTGAACATGCTGCTTCAGAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227180" ref_strand="+" ref_description="SGN-E227180 [cLEL-30-G23](-)">
      <seq>ggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcagtttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="58298" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58598" g_stop="58657" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58937" g_stop="59292" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="416" r_length="356" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E227180" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58598" e_stop="58657"/>
          <exon e_start="58937" e_stop="59292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAAAT</genome_strand>
        <mrna_strand>GGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAGTTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCCATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303639" ref_strand="+" ref_description="SGN-E303639 [cLEY-6-C13]">
      <seq>gagctgctttcgggtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaacatctattcatgactgagcttatgagtagtggattcaagttgctaacacgcactgttatttctcactgttagtgaaatgattccattaatggcatgttcatcattttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="61929" stop="61020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61630" g_stop="61312" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E303639" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61630" e_stop="61312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</genome_strand>
        <mrna_strand>GAGCTGCTTTCGGGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713192" ref_strand="+" ref_description="SGN-E713192 [FB06DH07]">
      <seq>ttcatgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcgcctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccgcatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62221" stop="61128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61921" g_stop="61429" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="506"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E713192" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61921" e_stop="61429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAAC</genome_strand>
        <mrna_strand>TTCATGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCGCCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCGCATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284940" ref_strand="+" ref_description="SGN-E284940 [cLER-19-L18]">
      <seq>atatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62143" stop="61143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="61444" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="410"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E284940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="61444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTT</genome_strand>
        <mrna_strand>ATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210991" ref_strand="+" ref_description="SGN-E210991 [cLEC-69-J12]">
      <seq>acaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataagcatatcaagccttacattccagatttcaagttggcctttgatcatttctgcatacacgctggtggaagggctgttattgacgagctggaaaagaatttacagctgacacaggttcacgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgngaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattangcaagttaacggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62599" stop="61271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62299" g_stop="61571" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E210991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62299" e_stop="61571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTC</genome_strand>
        <mrna_strand>ACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGNGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTANGCAAGTTAACGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427398" ref_strand="+" ref_description="SGN-E427398 [STM-48-K8]">
      <seq>gattactcttgttataaagctcctgagcatctcttttctccgtatgaacggttcatgcagcattcacggctcaccggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggaacgttctggcctcggggacgaaacttatgtccctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaggctgagcaagttatgtttggtgcactggacaaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgccaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattactcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaataagtctatggatagaagaagggcgaaatataagcttgttcatgctgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaagatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctgggggagcgctttagacgaatattactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataatcaagaaaatatttaataagcatatcaagccttacattccagatttcaagttggcctttgatcatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63176" stop="61685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62876" g_stop="61985" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="892" r_length="892" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E427398" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62876" e_stop="61985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCT</genome_strand>
        <mrna_strand>GATTACTCTTGTTATAAAGCTCCTGAGCATCTCTTTTCTCCGTATGAACGGTTCATGCAGCATTCACGGCTCACCGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAACGTTCTGGCCTCGGGGACGAAACTTATGTCCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAGGCTGAGCAAGTTATGTTTGGTGCACTGGACAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCCAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACTCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAATAAGTCTATGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGCTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAAGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGGGGAGCGCTTTAGACGAATATTACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATCAAGAAAATATTTAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321575" ref_strand="+" ref_description="SGN-E321575 [cTOB-25-O1]">
      <seq>gttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62759" stop="61734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62459" g_stop="62034" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E321575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62459" e_stop="62034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAG</genome_strand>
        <mrna_strand>GTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238102" ref_strand="+" ref_description="SGN-E238102 [cLED-22-I2]">
      <seq>aaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgaggggctgatgataaggcatttcgctgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="62903" stop="61814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62603" g_stop="62114" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E238102" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62603" e_stop="62114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTA</genome_strand>
        <mrna_strand>AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGAGGGGCTGATGATAAGGCATTTCGCTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583102" ref_strand="+" ref_description="SGN-E583102 [8735]">
      <seq>tcaaggctccgtatgaacggttcatgcagcattcacggctcaccggtgattttgatgagatcgtcgcttgagtttcagaggaatgattctggaacgttctggcctcggggacgaaacttatgtccctgagagctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaggctgagcaagttatgtctcggtgccttggataaattcgtttgctaatacctctgtgaaacctaagtaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggatatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattactcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaataagtccgtggatagaagaagggcgaaatataagctttgttcatgcctgcttagagacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63145" stop="61955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62845" g_stop="62262" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E583102" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62845" e_stop="62262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAG-TCGTCGCTTGAGTTTCAGAGGAA-GATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAG-GCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGT-TTGGTGCCTTGGATAAATT-GTTTGCTAATACCTCTGTGAAACCTAAG-AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTT</genome_strand>
        <mrna_strand>TCAAGGCTCCGTATGAACGGTTCATGCAGCATTCACGGCTCACCGGTGATTTTGATGAGATCGTCGCTTGAGTTTCAGAGGAATGATTCTGGAACGTTCTGGCCTCGGGGACGAAACTTATGTCCCTGAGAGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAGGCTGAGCAAGTTATGTCTCGGTGCCTTGGATAAATTCGTTTGCTAATACCTCTGTGAAACCTAAGTAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGATATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACTCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAATAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697483" ref_strand="+" ref_description="SGN-E697483 [FA03AD12]">
      <seq>cggtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcacaactggtattttgggaataagaagtccatgttgatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63217" stop="62043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63133" g_stop="63131" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63130" i_stop="62915" i_length="216">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62914" g_stop="62343" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="575" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E697483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63133" e_stop="63131"/>
          <exon e_start="62914" e_stop="62343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</genome_strand>
        <mrna_strand>CGG........................................................................................................................................................................................................................TTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCACAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557633" ref_strand="+" ref_description="SGN-E557633 [16464]">
      <seq>atccacagtttacatcatgactcggccagaggccggctttatttggttgattactcttggttataaagctcctgagcatctcaaggctccgtatgaacggttcatgcagcattcacggctcaccggtgattttgatgacgtcgtcgcttgagttacagcaggaagattctggaacgttctggcctcggggacgaaacttatgtccctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaggctgagcaagttatgtttggtgcactggacaaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgctatgttgtgaattgtagtttgttcaatcctgactccatcgctttcagctatgattgtgaacaagtataatgttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtcgctggtgtatttgccgttgatcttgccaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattactcagaactggtattttgggaataagaagtcctgttgataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63222" stop="62044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62922" g_stop="62343" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E557633" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62922" e_stop="62343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACAGTTTACATCATGACTCGGCC-GAGGCCGG-TTTATTTGATTGATTACTCTT-GTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGA-GTCGTCGCTTGAGTTTCAG-AGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCT-TGTTGTGAATTGTAGTTTGTTCAATCC-GACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAA-GTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGT-GCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</genome_strand>
        <mrna_strand>ATCCACAGTTTACATCATGACTCGGCCAGAGGCCGGCTTTATTTGGTTGATTACTCTTGGTTATAAAGCTCCTGAGCATCTCAAGGCTCCGTATGAACGGTTCATGCAGCATTCACGGCTCACCGGTGATTTTGATGACGTCGTCGCTTGAGTTACAGCAGGAAGATTCTGGAACGTTCTGGCCTCGGGGACGAAACTTATGTCCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAGGCTGAGCAAGTTATGTTTGGTGCACTGGACAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTATGTTGTGAATTGTAGTTTGTTCAATCCTGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAATGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTCGCTGGTGTATTTGCCGTTGATCTTGCCAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACTCAGAACTGGTATTTTGGGAATAAGAAGTCC-TGTTGATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697949" ref_strand="+" ref_description="SGN-E697949 [FA04DB10]">
      <seq>gaggcatcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagcccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63639" stop="62306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63340" g_stop="62606" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E697949" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63340" e_stop="62606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAG-CCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</genome_strand>
        <mrna_strand>GAGGCATCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329222" ref_strand="+" ref_description="SGN-E329222 [cTOD-2-M5]">
      <seq>aaaaagtcagcttcagtggtagtatagtagagagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggtacgcaagtcaacaccgcgaacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggctacatttgcagtataatctagtctctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63643" stop="62486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63343" g_stop="62786" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E329222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63343" e_stop="62786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGT</genome_strand>
        <mrna_strand>AAAAAGTCAGCTTCAGTGGTAGTATAGT--AGAG-AGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGTACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697682" ref_strand="+" ref_description="SGN-E697682 [FA03DB12]">
      <seq>ggctgcaggaattcggcacgacgcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctactttctgttattatttgttccgccgttttggcttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63640" stop="62491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63333" g_stop="62791" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="566" r_length="543" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E697682" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63333" e_stop="62791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGA</genome_strand>
        <mrna_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTACTTTCTGTTATTATTTGTTCCGCCGTTTTGGCTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698633" ref_strand="+" ref_description="SGN-E698633 [FA07AD11]">
      <seq>gaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggcggtggtgagccagtcggagtccagatccagcagagtaggaggttgccggatttccttcagagtgcaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtctgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggctacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctccctgagcatctcaaggctccctatgaacggttcatgcagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63590" stop="62513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63290" g_stop="62813" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E698633" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63290" e_stop="62813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCT-CCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATT</genome_strand>
        <mrna_strand>GAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGCGGTGGTGAGCCAGTCGGAGTCCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGCAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTCTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361117" ref_strand="+" ref_description="SGN-E361117 [cLPP-13-B5]">
      <seq>ccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataagtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtggccgcatatgactttggcctattttattctaccgttggttacgaatatttattagtatatataggaatccaccattaanggaatatatatatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69520" stop="64833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69220" g_stop="68567" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68566" i_stop="67338" i_length="1229">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67337" g_stop="67333" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="647" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E361117" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69220" e_stop="68567"/>
          <exon e_start="67337" e_stop="67333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGAT--AACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTT-TTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTACAAATAAACATTTAAATTTATAAACTTAAGTAAATTAATACATATATCTTATGTACTAATATTTTATGTGGCAATTTGTGTTTTATGTAAAGTAGAATATAAATATATGTATGTTTAATTTAATACAAATTTGACTAATTACTTCTACATGTAAAAAATTGAAAAGAAGCACATGCAAAGAATTTTGAATTGAATTATCGAGATTAATCTTGAAATTACAATACAAATATGAAAGTTGGATTTGTTAAAAGAACAATTTCGAAAATCGTACATGTAAAAAATTATAAAAAAAAGTATATACAAATCAATGAATTTTGAATTAAATTATTGCGACTAATTTTGAAATCACAATATAAACATGAAAGTTTGATTTGTTAAAAAAACGATTTGAAAATCATGATTTAAATTTGGATGTATAATATAATTTCCAGACTTAATTTGATGAATTAATAATCAAAGATTACAGTATTGATACTGCAACGGATTATAACAAGAAAATTAATTATTGCGAAGCATATGTTTTTTTTTTGGTTGTAATTACAAGCACATGATTTGTTGCCTAAGTACATCTTTTATTGCCAAAATAATAATAATAATAATCCACATTAAGCAAACAAATTTAAACAACTTTATTTGTATGCTTATTTAAATTTTATGTAATTCTAATTTTACCTGTTGTTAATTTTCTTAAATACTAATTATTAGAATTGTCAAAAAGGGTCGGTTCAGTCTCGCTCGGTTCAAGCCTCGCAAGCAAAGAAATTTGAAGGGCAAGGGCGGATCAGCCCTTCATTTGAGGGTCTGAAAATACTCAATCACTATAAGGATTGAAGGGTGGAGCGGACTAGTTCTTTTGTTTTCTTTTCAAACTTAAAAAAATATATCATCAAGAAAATGAGAAGATTTTCAAGTCACATATGAAAAATAATGGTGTTGTTTCAATAACACTAGTAAAATGTCAAGTAAAGAACTGTTACAGGTAATGTAATTAGCATGCATTCGGGATACAAGATATGCGAGATATAATGTATCTCGCGCATCAGATTAGTGTATCATGCATAAAAATAATATATCTTACTTAACTATTAATGTATCTCGTGCATCAGATTAATGTATACATATATTATTGTATCAATTGAGGAATTTCTATAATTATAAATTTATAAGGCACAAATAACAAATTTACCTTAATATATGTGATTTCTGTCATTTACCCTTTAAATGAATAGTTTTG</genome_strand>
        <mrna_strand>CCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCA-TTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATG-AAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGG-A---GGTGTTTAGG-TTTT-ACT-T-TTTTTTT-AAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAAGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69521" stop="68267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69221" g_stop="68572" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69221" e_stop="68572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGAT--AACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTT-TTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTG</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCA-TTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATG-AAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGG-A---GGTGTTTAGG-TTTT-ACT-T-TTTTTTT-AAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723246" ref_strand="+" ref_description="SGN-E723246 [FC19DF12]">
      <seq>gggcgattggcggccaatcggccgaattggtaagttgtaaaaaccgggtcagggcaattgacccatttcaaatagtaacatttccttgtgtaaaattctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtctgcagatattgatgagaaagctatccggaaagaaaagcctgaagatttagttatggctcttgctgaggcaaaggcagaagccatcataccaagggtttcaattggagaatccgaaggggatgccgagccaacacttctaattacgtgtgatcaagtggtggtctatgaaggtgtgatcagggaaaaaccatccagtgaagcagaagcacgtcagttcatgaaagattacgccaatggacatgcagcaaccgtgagttctgttcttgtcacgaacctgacaacaggaagtagaagaggagagtgggacaaagtcgagatttatttccacgacataccagatcaagtcatagataaactgattgaggaagggatagttctttatgcagctggtggcttgataattgaacatcctctcgttttgccttatattaaggaagtggttggctcgactgatagcgtgatgggtctcccaaaagctctcaccgaaagacttataaaggaggttctttagtatgactatgatcctgctgctacctgaatgagttcgcgatctataattttgatatacgctattggagctgaaattatcattgattgttggcactggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69187" stop="74380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69494" g_stop="69631" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="171" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69741" g_stop="69812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="243" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69813" i_stop="70556" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70557" g_stop="70631" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="318" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70632" i_stop="71830" i_length="1199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71831" g_stop="71911" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="399" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71912" i_stop="72577" i_length="666">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72578" g_stop="72647" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="469" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72648" i_stop="72722" i_length="75">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72723" g_stop="72814" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="561" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72815" i_stop="73516" i_length="702">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73517" g_stop="73558" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="603" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73559" i_stop="73649" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73650" g_stop="73730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="684" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="73731" i_stop="73908" i_length="178">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73909" g_stop="74080" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="856" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E723246" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69494" e_stop="69631"/>
          <exon e_start="69741" e_stop="69812"/>
          <exon e_start="70557" e_stop="70631"/>
          <exon e_start="71831" e_stop="71911"/>
          <exon e_start="72578" e_stop="72647"/>
          <exon e_start="72723" e_stop="72814"/>
          <exon e_start="73517" e_stop="73558"/>
          <exon e_start="73650" e_stop="73730"/>
          <exon e_start="73909" e_stop="74080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATGGTAAATATCTAATTACTTATCAATTAGTTGTTGTTCTGTATGCATATATGATTGAATAAGTTCCTGCTCAAAGTCATTCTAATTGATATATGGTTAATAAGTAATAGATTGATTCAGATACTTATTTGTTTGTAGCAATATCGTTAAGTGATAATGAGTTGGTGTCACTGAGCTTAAATCAAATTATGAAGATCCATAATGTATATATACATTGAATAATAAATGTTTGATTTAGTAGATTAAAAATGTAAGAACATGTAAAGATACTAACAAGTAACACATTAAGGAGCTACTCAAACATCACTAATTAGGACATGAAGTTAATCTGAGTTTCGACATTAGCACCCGAACTCAACAGGTTAGGTTTATTATTATAGAATTAATTTCAAAAGCAAGTGTCAGCTTTTGTATGTAGAAGAATAAGAGATGCAAATTTTACAACATAATTCCATCATCGAACTAAAGCAGCAATTGGTTATTATGATATATTATTTGAATCAATGCCAAAAGCGTGACTACCACTGACCATCACCCCCAAGTCTCAAATAGTCGAGAGCAACACATTCTTGGGCCTTTAGGTGCTTGTTGTTGTTATTATTGCTAGGTGCTATAATTCTATATAAACGACACATATCATGTTTGGTGCTTTCACTGAATGTTAGATAAACAGAGATTCATATAGGATCCCCAACTCGATTGAGTTTTATTGGTGGATTAACAGCTTAGCATGTTCTTGTAATATAGTCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAGGTTTGTTTTCTTAAGAACTAGTGCTAGTCCACACATCTCTGAACATATTTTTGAAGTCATTTACTGCTTTGAAATTGCTGGGGGTTTATTCATTTTTCATTTACTGTCATACATGACACCGTTGTGATTTTTTCTTGTTTGTGGCATTCGTTTTTGATTTATGAATCACTCTATGCAATTTGTGATGCTTTTCTTTTAGAGTGTCTTGTAGTGATTTCAACCGTAATCTTAATTTTGGTGTTGATGTTATTTGTAAAATTGCTCTATTACCTATCTTGTTGTGATAGTGTATCTGATTTTTTGGCAAATCATTTAGCTAGCGTGTAGACGTAGATTTGGTTGAAACTTGAATTAAAAAGTTTTTGAACTTGTGTTGAAAAATAAATTTTGGAATGTTAAAGTTGAGTTAGCTTGCATTTTTCTTGAAAAGAGTTGAAGTTTGTGAGTGGAAGAAACTGTTTAGCCAAAAATCTGTCCCCGAATTTGATTTTTTCTTCAAAAACTGATCAAATACCATCAACAAACAAGGGGAAAAAGGGCATCCCAATGCTCAAAGCATCCTACATTCACGCAGGGTCCAGTGATGTTTTCGATTTTTCTTTTAAAATCTATGTCCAAACGGGAGCTTAGATTCTATTCCTCGTCTAGTTGAGTTCTTCACACTGCTTCATAGTATAATTGAAGCCTTGTTTTGAAATGCTTATCTTAATTCCATGAAATTGCATTCTGTGTCAGGCCGATGCTATCATATCAAAATTTCGAAAAACTGAAAACCCTGAGAAGGTTCTCAATCCAACAATTCTGGTTGCAGCTGACACAGTATGTCTTGCCTCTTTTGCCTTTTCAATCTCCCCGCCAAAAGTTATTTTTCTGTCTTCTATTTGATGAAATGAGACCTATAATATGTTATTTCTGCCCGCGATTTTGAATGATAATAAAATTGTCTGCCTTTTATTGTATTGTTTTTCTTGCTTTTATGCTTTGTACCGGTCCTTTTCTGTGTTTGCTTTTTTTCTTTCAAAATGATTCAATTTCTTGTTGGGATATTGGAGGATAATTGTGATGTCCACAAGCTTGCATAATTTTACAGTTTTTCTTTTTTCACATGATAAATTCTTTGCATTTATTGGACTTTGCTATATAGTTTCAAAGCATACATCATAATTGGCATTAACCTGAATAGCTGGAACTATAATCAGGCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAAGTATACATAATTTCTGTTCTTCTCATCGTTTACGGTTAAATATCCGTTATTGACTTACTATAATGTTTTTTACCATTACATCATCTTTGTTTTCATTTCGTTTTTCCCCCAGCTAAAAATTACTATGTTACTTGAGGTGTTTGGTTCAAATATAATACCTGTCTCATCTTCTTTTGAGCGTAAAGTGGTGCCTTTTCAAATAGCTAATCTAAATTATACAATCCTTCATTCCTTCTGCATGAATTGATAACAATATTTCACAGAGATAATACTATCTTCCTTCAAAGTCCATTGTCAAGATTTGACTAGTGTAGAGCACTCAACGGTGTGACGTAGTGGTCAATGAAGTGGGGAGAACTATGAGGTATCATGTCAAATCCCAACCCCAACTCCAATGTAGGAAAAAATACTAGGTGATTTCTTCGTATCTTCCTAACCCTTAGTGGGTAGATTTATCCATTACCTGTGCGGGTGGGAGATGGAAAGTATAGTGGAATTGTCGAGGCGCACACAAGCTGGCCAAGCACCACTATCATTAGAAAAAAAAGGAAGAAGATCTGATTGGTGTTTAGACATGTACTCCCAGTATTCTCTGTTTTCTGCCATTTATTAATGTGTGCGCTTTTCTATGTTAATGATCTTATCCTAACTTGAAATGGTCTGGAGGTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAGGTTTACCATTGCTTTAATCAATTTCTTACTATATTAGTTTTATAATTCTGCTAGTCTTACGCTGTCAACTTCCAGATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAGGTACCTCTGTTGATTTCTCTCATTTTCAATTATCAAATGGGTCTCTATGGCTTTTTAGTTTTAGTTTTTTTCAATGGGTTTGTGTCTACTTCCTATCTCAAATTGTTGCAATGCATACCTCTTATTCTAAATCTTGATAAATAATAGTTTTAAAAAGTTCGGCAGTGATGAATGACTTCTACGCGTTGGGTAGGCTTATTGGATACTTCACAAGGTTCCAATTCCCTATAGCCATTCAATAGAAAAGTTATGCAGGGATGATTTGGTGGAGAGTAGAAGTTGGGTGGAATTGGAATTACGTATTTGGATTTGTGGACTGAAGAAAAAATCGACAACTCCTGAAATGATGTTGAAATATTGATGACACTCTACAAATTTCTCTTTCCCACATATTCAATACCACATTCTTAGGTTCTCAAGATTATTACATCTAAAAGCACCTATTGTCTAATGATCCTGGGAAATGTTGTCCTACGCTCGACTTAGCTTAATCAAGTGTTTTAAGCATGATACCGGAAAGCACAAACGAGTGGTAGATGGACCTATTGAGTTTCTTCTTCAACAATTCATTCAGATGTCCACAATATTTGCCTAGTCAAATGTGTACACGAACTGCTTGAGCCTTGAGATGTTCAGCATAATCGCTTTTGTTTTTATTTTTCACTCATCTAGGAAGAGTAATAACATTTCTTTTGATTGCAGATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTGGTATAACTTTCATCTGAATTGTTAGTTATTGATCATATCAAATGATGGATGCTGTACTTGTTGTCTTACGTTCTTTATTTTTCTTGATCAGATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTGGTAAGTGTTACACCACCACCTCTCTCTCTAATGTCACCCAACGTAAATCATAGTCGTGATGGTGTTACACATTTGTTTGTTTGACCCTTTGCCTTTATAGAGACCTAAACTTTTAGTACTTGTTAAAGTTCATCTGATATCGAAAATTCTGCATAATATTAATACCACATTTGGGCAGGTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</genome_strand>
        <mrna_strand>TTGTAAAAACCGGGTCAGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCG-AAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG...........................................................................ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGTAGAAGAGGAGAGTGGGACAAAGTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG...........................................................................................ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG..................................................................................................................................................................................GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTGCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTGGCACTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286042" ref_strand="+" ref_description="SGN-E286042 [cLES-13-G13]">
      <seq>tctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69256" stop="70112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69556" g_stop="69631" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69741" g_stop="69812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="148" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-E286042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>148</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69556" e_stop="69631"/>
          <exon e_start="69741" e_stop="69812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG</genome_strand>
        <mrna_strand>TCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316089" ref_strand="+" ref_description="SGN-E316089 [cTOA-23-H23]">
      <seq>ttcagttattgagaattcagcgtgatcacattgaagatgaaatacaccatcttaagtggtctctcaagtctgaagaaactgatgatgccagcaaggagatgttttcggagcttcacaagctgcagtccaaaggtgaggaggtcaggctcagtcatcagcaggcacaacgagaatgtcaccaaaagttccacaaggtctggggacaactaatgaagactggttatcagaattctcgttttgcacatcaggtggaaagatttgcttgcctttataccagtcaagtcacaaacttgagcctgtattccccggataagtactataggcctagtgaggattttatgcctcatgaatttggtatcctctctatttgaggggatcttgtaatccaggggccaaaggcagtgcattttgaagaagagctttgctcattctaatttacattccgagttaccaacatggaaaatctttatgttttgtggtataataacttaaattgtatcatatttgtttgtgctgtctcatatatgcacttatctgattgtgaatttgaattatataaaacaactagaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81621" stop="79347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81321" g_stop="81255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81254" i_stop="80714" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80713" g_stop="80656" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="125" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80655" i_stop="80458" i_length="198">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80457" g_stop="80398" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80397" i_stop="80106" i_length="292">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80105" g_stop="80043" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80042" i_stop="79973" i_length="70">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79972" g_stop="79647" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-E316089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81321" e_stop="81255"/>
          <exon e_start="80713" e_stop="80656"/>
          <exon e_start="80457" e_stop="80398"/>
          <exon e_start="80105" e_stop="80043"/>
          <exon e_start="79972" e_stop="79647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAAGTAATTATTATCTCCATTTCATTTTTTATTGTAGAACTCATATGTGCATGAGTTATATTTCGGTGTGCATTTTATCTGTGCAACTGTTTCATGTTGAGTCCCTTCAGCAAAGGAAGTACTAGGATAAAAGAATTAAGGAAAATAAAGAAACAAAATCAAGTTTGCTGGAGAATTCATACAGCCGACTTCAGCTTATTTAAAATTGAGGTTTAGTTGATTCAGTGATTGGTTGAAGGTGGGTAGGAGGATGAGAAAGAATTAGAGCCTTTATTTATGAGTATAGACTTTCAGCCTTTTTGGGACTTTATATATGTCAGTGTGGAGTAGTCTTGTCAGCGAGCAGTTACAAATTTCCTTCAAGTGGAGAAATTATTGAACATTTTATTGTGCATCTTAAACAAAGATATTCGTTGTTCGTCGAACCATTGAGACAGTGAATACTCATACATTATGTTAATATAATTTTTCCATCATCTGAATTTGGCTGAAGGTAAAACTTTTGTCGTTGTCGATCATTTCATGAGCTGTCATTATGCTTCAGGTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAGGTTGGTTATTTCAAGATAGTATCAGTAGGAAGATAGTTTTCAATGTTACAAGAGAAAACAATTTTATATTTGGTCATTCTCTACATTGATACTTGTTACCTGTAGAATCAAATGTACTTGATCGCATTGAAGTGAATAGGTAATGACTTCTGTTATGAGGTTCAACTAATCTGGTGTTTTGATGGTGTCATTTTATAGTCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAGGTACGAGTGTTAAAGAGAGAATTTCCTCTAAATGTGGGATTATTTCTTTAGAGAACAGTTCATCCTTTTTCGGGAACAAGCTTTAGTGAAAGCTATTTAAAAATAACATGCATGTATAATACACAATTATACTTCCTTTAAACTTTGTAAAGTCAATGGATATATCCGTAACTTTATTCCCTTGGTTATATTTGACACTAACATGGTGTACAGTATTAACAAATCGATTTGGATTTTCAACAAGAGAAGTAGTGTACTTTTTTCTTTCTGATGAACTCATTAAACGTTTCAGTTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAGGTACGATTGAATAATTGCAAAGTATATATCCTGCTCTTTGTGAGTGTGATCTTTACTTGTCGATTCACAGGTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</genome_strand>
        <mrna_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG......................................................................................................................................................................................................TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG....................................................................................................................................................................................................................................................................................................TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG......................................................................GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>139</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="352" PGL_stop="4367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="352" e_stop="796"/>
            <exon e_start="3688" e_stop="4367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="352" e_stop="796" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="3688" e_stop="4367" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="352" stop="743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="354" stop="796"/>
              <exon start="3688" stop="3812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="357" stop="796"/>
              <exon start="3688" stop="3777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="357" stop="796"/>
              <exon start="3688" stop="3710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="361" stop="796"/>
              <exon start="3688" stop="4148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="363" stop="793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="365" stop="796"/>
              <exon start="3688" stop="4139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="367" stop="796"/>
              <exon start="3688" stop="3953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="367" stop="796"/>
              <exon start="3688" stop="3764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="374" stop="796"/>
              <exon start="3688" stop="3889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="377" stop="796"/>
              <exon start="3688" stop="3891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="377" stop="796"/>
              <exon start="3688" stop="3757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="394" stop="796"/>
              <exon start="3688" stop="4026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="394" stop="796"/>
              <exon start="3688" stop="3775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="408" stop="796"/>
              <exon start="3688" stop="3776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="416" stop="796"/>
              <exon start="3688" stop="3891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="482" stop="796"/>
              <exon start="3688" stop="3995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="482" stop="796"/>
              <exon start="3688" stop="3899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3719" stop="4367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404262" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3753" stop="4221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3839" stop="4279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3883" stop="4349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3900" stop="4349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3992" stop="4279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG : GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAAGTGACTTTGTTGAGTTGG</gDNA_template>
            <first_frame> S  I  K  G  K  R  S  I  E  L  S  L  *  L  H  F  R  K  T  A  S  C  F  *  S  I  I  L  R  R  H  N  V  *  K  P  V  R  Y  R  C  D  D  M  V  A  G  G  K  V  I  S  G  G  V  C  N  G  G  S  E  A  R  F  G  G  D  R  F  E  I  E  D  A  C  D  S  G  V  C  *  Q  G  *  F  *  A  V  F  S  P  E  E  D  L  Q  S  *  *  P  H  R  S  C  N  R  W  T  Y  C  *  R  P  C  T  F  S  L  Y  A  Y  *  V  Y  *  L  *  L  L  L  *  V  A  V  T  C  R  A  S  G  C  S  A  C  *  *  S  S   : G  L  H  S  T  I  L  E  T  A  L  W  C  W  L  A  C  W  W  T  G  *  V  W  C  S  P  L  L  Q  L  P  *  W  *  L  L  *  V  S  S  V  C  H  W  I  S  V  T  S  C  K  N  L  L  G  T  *  V  *  D  F  H  G  F  F  T  *  K  P  A  *  G  C  T  L  C  S  E  R  N  S  A  R  G  K  T  D  K  L  Q  L  H  G  G  C  G  R  S  R  R  G  F  P  Y  P  G  Q  G  N  H  T  S  I  D  Q  *  I  *  D  S  W  R  R  C  S  C  R  S  P  G  R  G  C  N  *  *  T  S  S  T  *  R  R  C  C  P  C  *  S  R  S  C  P  N  G  Y  L  I  M  L  C  L  P  L  G  L  T  S  F  I  F  R  D  F  F  L  E  C  *  D  F  V  W  H  N  G  L  Y  F  L  L  G  C  F  I  M  Q  S  C  F  T  L  V  Q  T  S  L  K  L  M  L  L  K  L  N  *  K  Q  L  *  V  T  L  L  S  W </first_frame>
            <second_frame>  P  L  K  G  R  E  A  *  S  *  V  C  D  C  I  S  A  K  R  H  R  V  F  D  R  *  Y  F  V  D  T  M  F  R  N  Q  Y  D  T  D  V  T  T  W  S  P  A  G  R  L  F  Q  V  E  Y  A  M  E  A  V  K  Q  G  S  A  A  I  G  L  R  S  K  T  H  V  I  L  A  S  V  N  K  A  N  S  E  L  S  S  H  Q  K  K  I  F  K  V  D  D  H  I  G  V  A  I  A  G  L  T  A  D  G  R  V  L  S  R  Y  M  R  T  E  C  I  N  Y  S  Y  S  Y  E  S  P  L  P  V  G  R  L  V  V  Q  L  A  D  K  A  Q  :  V  C  T  Q  R  S  W  K  R  P  Y  G  V  G  L  L  V  G  G  L  D  E  S  G  A  H  L  Y  Y  N  C  P  S  G  N  Y  F  E  Y  Q  A  F  A  I  G  S  R  S  Q  A  A  K  T  Y  L  E  R  K  F  E  T  F  M  D  S  S  R  E  S  L  L  K  D  A  L  F  A  L  R  E  T  L  Q  G  E  K  L  T  S  S  N  C  T  V  A  V  V  G  V  G  E  A  F  H  T  L  D  K  E  T  I  Q  A  L  I  N  E  F  E  I  A  G  E  D  A  P  A  E  V  P  E  E  A  A  T  D  E  P  A  A  P  E  E  G  A  A  P  A  D  Q  G  A  A  P  M  D  I  *  *  C  Y  V  F  L  *  A  S  L  L  S  Y  S  E  I  S  S  *  N  V  E  I  L  C  G  T  M  G  Y  I  F  C  L  D  V  L  L  C  N  H  A  L  L  W  S  K  H  L  *  N  S  C  F  *  S  *  T  K  N  S  F  K  *  L  C  *  V   </second_frame>
            <third_frame>   H  *  R  E  E  K  H  R  V  E  F  V  I  A  F  P  Q  N  G  I  V  F  L  I  D  N  T  S  *  T  Q  C  L  E  T  S  T  I  P  M  *  R  H  G  R  R  R  E  G  Y  F  R  W  S  M  Q  W  R  Q  *  S  K  V  R  R  R  *  V  *  D  R  R  R  M  *  F  W  R  L  L  T  R  L  I  L  S  C  L  L  T  R  R  R  S  S  K  L  M  T  T  S  E  L  Q  S  L  D  L  L  L  T  A  V  Y  F  L  V  I  C  V  L  S  V  L  T  I  V  T  L  M  S  R  R  Y  L  S  G  V  W  L  F  S  L  L  I  K  L  R :   F  A  L  N  D  P  G  N  G  L  M  V  L  A  C  L  L  V  D  W  M  S  L  V  L  T  F  I  T  T  A  L  V  V  T  T  L  S  I  K  R  L  P  L  D  L  G  H  K  L  Q  K  P  T  W  N  V  S  L  R  L  S  W  I  L  H  V  K  A  C  L  R  M  H  S  L  L  *  E  K  L  C  K  G  K  N  *  Q  A  P  I  A  R  W  L  W  *  E  *  E  R  L  S  I  P  W  T  R  K  P  Y  K  H  *  S  M  N  L  R  *  L  E  K  M  L  L  P  K  S  R  K  R  L  Q  L  M  N  Q  Q  H  L  K  K  V  L  P  L  L  I  K  E  L  P  Q  W  I  F  D  N  V  M  S  S  F  R  P  H  F  F  H  I  Q  R  F  L  L  R  M  L  R  F  C  V  A  Q  W  V  I  F  S  A  W  M  F  Y  Y  A  I  M  L  Y  F  G  P  N  I  F  K  T  H  A  S  E  V  E  L  K  T  A  L  S  D  F  V  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="431" stop="796"/>
                    <exon start="3688" stop="4161"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFVDTMFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVILASVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRTECINYSYSYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFETFMDSSRESLLKDALFALRETLQGEKLTSSNCTVAVVGVGEAFHTLDKETIQALINEFEIAGEDAPAEVPEEAATDEPAAPEEGAAPADQGAAPMDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1449" e_stop="1971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1449" e_stop="1971" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1449" stop="1971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</gDNA_template>
            <first_frame> K  L  H  K  Y  F  S  Y  F  Y  S  T  A  E  M  V  E  V  F  F  I  W  V  I  A  *  T  P  L  L  P  F  C  A  V  L  V  K  C  L  L  I  L  H  L  S  N  I  H  *  I  N  L  K  L  G  *  K  K  F  H  I  *  D  L  A  E  N  H  L  S  S  N  Y  D  F  L  H  F  *  C  M  Q  M  L  K  H  I  P  *  E  F  V  F  F  *  R  S  K  *  C  Y  I  S  Y  S  L  C  F  V  *  I  Q  V  G  P  L  D  T  S  A  D  P  E  V  T  L  I  I  T  *  D  T  T  N  E  C  I  I  R  Q  T  R  F  V  S  L  Y  K  I  I  *  L  G  V  E  S  K  K  E  K  K  T  S  T  I  C  G  L  K  Y  V  M  I  </first_frame>
            <second_frame>  N  S  T  N  T  S  V  I  F  I  V  L  L  K  W  W  K  F  F  S  S  G  *  *  L  E  H  L  Y  C  P  F  V  Q  F  L  *  N  A  C  S  F  Y  T  C  Q  I  S  I  R  S  I  *  N  L  G  E  K  S  S  I  F  K  I  *  Q  R  T  I  *  V  Q  I  M  I  F  C  T  F  S  A  C  K  C  L  N  I  F  H  K  S  L  S  F  S  R  E  V  S  S  V  I  Y  H  I  L  Y  V  L  F  E  Y  K  W  G  H  S  T  L  V  Q  I  Q  K  S  H  S  S  S  P  K  I  Q  P  M  N  V  *  Y  D  K  L  A  L  F  H  F  I  R  *  Y  D  W  V  L  S  L  R  K  K  R  R  P  L  Q  F  A  V  L  N  M  S  *  Y </second_frame>
            <third_frame>   T  P  Q  I  L  Q  L  F  L  *  Y  C  *  N  G  G  S  F  F  H  L  G  N  S  L  N  T  F  I  A  L  L  C  S  S  C  K  M  P  A  H  F  T  L  V  K  Y  P  L  D  Q  F  E  T  W  V  K  K  V  P  Y  L  R  F  S  R  E  P  S  K  F  K  L  *  F  S  A  L  L  V  H  A  N  A  *  T  Y  S  I  R  V  C  L  F  L  E  K  *  V  V  L  Y  I  I  F  F  M  F  C  L  N  T  S  G  A  T  R  H  *  C  R  S  R  S  H  T  H  H  H  L  R  Y  N  Q  *  M  Y  N  T  T  N  S  L  C  F  T  L  *  D  N  M  I  G  C  *  V  *  E  R  K  E  D  L  Y  N  L  R  S  *  I  C  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1660" stop="1863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQIMIFCTFSACKCLNIFHKSLSFSREVSSVIYHILYVLFEYKWGHSTLVQIQKSHSSSPKIQPMNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8590" PGL_stop="5150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8590" e_stop="8418"/>
            <exon e_start="7201" e_stop="6938"/>
            <exon e_start="6855" e_stop="6784"/>
            <exon e_start="6671" e_stop="6633"/>
            <exon e_start="6425" e_stop="6318"/>
            <exon e_start="6027" e_stop="5930"/>
            <exon e_start="5821" e_stop="5710"/>
            <exon e_start="5331" e_stop="5150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8590" e_stop="8418" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7201" e_stop="6938" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.957">
            <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6855" e_stop="6784" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6671" e_stop="6633" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6425" e_stop="6318" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="5930" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.937">
            <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5821" e_stop="5710" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5331" e_stop="5150" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8590" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8589" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8583" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8581" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8580" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8563" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8562" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8556" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8555" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8554" stop="8418"/>
              <exon start="7201" stop="6940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8550" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8524" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="6001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8451" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7059" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6979" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6943" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6793" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA : GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG : TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG : GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG : TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG : ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG : GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG : TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</gDNA_template>
            <first_frame> W  E  L  K  F  D  Q  P  P  L  M  V  K  I  K  V  K  V  *  I  *  V  H  Q  L  Y  L  D  Y  N  H  L  P  *  *  I  I  *  L  R  W  I  G  L  F  S  P  K  F  P  V  N  V  V  A  L  S  Q :   L  Q  L  K  S  *  S  I  Y  S  T  S  L  T  P  I  S  F  L  L  L  T  M  N  P  Y  *  R  L  *  L  E  V  A  L  Q  I  Q  L  E  G  W  L  L  V  L  G  L  V  V  G  S  L  G  L  V  A  K  M  K  K  V  N  Y  L  *  A  T  W  A  F  T  K  W  I  S  Q  D  *  D  *  R  M  E  L  Q  L  S :   V  F  V  W  L  T  K  L  A  I  V  P  C  V  H  V  C  L  A  L  *  K  F  R :   Q  M  N  *  K  E  R  T  S  K  V  L  S :   G  W  Y  *  D  M  P  Y  *  M  *  K  L  L  R  W  P  S  K  *  Q  R  K  K  V  F  L  F  L  *  I  L  P  A  L  R :   W  *  G  S  L  N  H  L  *  L  N  Y  W  S  R  E  T  *  T  F  A  S  Q  T  R  M  K  Q  L  S  C  *   : G  V  K  R  K  Q  I  L  M  Q  H  L  N  I  W  L  N  I  A  S  G  L  L  S  P  *  L  K  T  D  A  L  R  N  M  R  K  S :   L  C  V  F  Q  Q  L  A  K  R  K  L  L  M  L  Q  V  Q  E  I  C  L  Q  V  D  F  C  M  D  W  *  E  D  C  H  W  R  N  V  V  G  W  V  L  A  A  V  V  L  *  F  D  L  L  G  V  R  *  H  L  </first_frame>
            <second_frame>  G  S  *  N  S  T  S  H  H  *  W  *  K  S  K  *  K  C  K  Y  R  C  T  S  C  T  W  T  T  T  I  C  P  S  R  S  Y  S  *  G  G  L  V  S  S  L  P  N  S  R  *  T  W  W  L  F  P   : S  C  S  *  R  V  E  V  Y  T  Q  R  A  *  R  P  Y  P  S  F  Y  *  Q  *  I  H  I  E  D  Y  S  W  R  *  R  C  K  Y  N  *  R  V  G  C  W  F  W  D  *  *  W  D  H  W  G  L  W  R  R  *  R  R  *  I  I  Y  E  Q  H  G  L  L  Q  S  G  S  L  K  I  E  I  E  E  W  N  Y  S  S   : V  C  L  S  G  *  R  S  W  Q  S  Y  H  A  S  M  F  V  W  L  C  E  S  S   : G  R  *  T  E  K  R  G  L  Q  R  F  *   : V  A  G  T  E  I  C  H  T  E  C  R  S  Y  *  G  G  H  Q  N  S  K  G  R  R  S  F  C  F  S  R  S  C  Q  L  *   : D  G  E  E  V  *  I  T  S  N  *  I  I  G  V  G  K  H  R  P  L  L  R  K  R  G  *  S  N  *  A  A  K  :  G  *  R  E  S  R  S  *  C  S  T  *  I  F  G  *  I  L  Q  V  G  C  C  H  L  S  S  K  R  M  H  C  E  T  *  E  R   : V  C  A  C  S  S  N  W  R  S  E  S  Y  *  C  Y  R  C  R  R  S  V  C  K  W  I  F  V  W  I  G  K  R  T  V  T  G  G  M  L  S  G  G  F  L  Q  R  W  F  C  D  S  I  S  W  G  *  G  N  T  * </second_frame>
            <third_frame>   G  V  E  I  R  P  A  T  I  N  G  E  N  Q  S  E  S  V  N  I  G  A  P  V  V  L  G  L  Q  P  F  A  L  V  D  H  I  A  K  V  D  W  S  L  L  S  Q  I  P  G  E  R  G  G  S  F  P  :  V  A  V  E  E  L  K  Y  I  L  N  E  L  N  A  H  I  L  P  S  T  D  N  E  S  I  L  K  T  I  A  G  G  S  V  A  N  T  I  R  G  L  A  A  G  F  G  I  S  S  G  I  I  G  A  C  G  E  D  E  E  G  K  L  F  M  S  N  M  G  F  Y  K  V  D  L  S  R  L  R  L  K  N  G  T  T  A  Q  :  C  V  C  L  V  D  E  V  G  N  R  T  M  R  P  C  L  S  G  S  V  K  V  Q  :  A  D  E  L  K  R  E  D  F  K  G  S  K  :  W  L  V  L  R  Y  A  I  L  N  V  E  V  I  K  V  A  I  K  I  A  K  E  E  G  L  F  V  S  L  D  L  A  S  F  E  :  M  V  R  K  F  K  S  P  L  I  E  L  L  E  S  G  N  I  D  L  C  F  A  N  E  D  E  A  T  E  L  L  R :   G  E  E  K  A  D  P  D  A  A  L  E  Y  L  A  K  Y  C  K  W  A  V  V  T  L  A  Q  N  G  C  I  A  K  H  E  K  E  :  F  V  R  V  P  A  I  G  E  A  K  V  T  D  A  T  G  A  G  D  L  F  A  S  G  F  L  Y  G  L  V  R  G  L  S  L  E  E  C  C  R  V  G  S  C  S  G  G  S  V  I  R  S  L  G  G  E  V  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8588" stop="8418"/>
                    <exon start="7201" stop="6938"/>
                    <exon start="6855" stop="6784"/>
                    <exon start="6671" stop="6633"/>
                    <exon start="6425" stop="6318"/>
                    <exon start="6027" stop="5930"/>
                    <exon start="5821" stop="5710"/>
                    <exon start="5331" stop="5152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVEIRPATINGENQSESVNIGAPVVLGLQPFALVDHIAKVDWSLLSQIPGERGGSFPVAVEELKYILNELNAHILPSTDNESILKTIAGGSVANTIRGLAAGFGISSGIIGACGEDEEGKLFMSNMGFYKVDLSRLRLKNGTTAQCVCLVDEVGNRTMRPCLSGSVKVQADELKREDFKGSKWLVLRYAILNVEVIKVAIKIAKEEGLFVSLDLASFEMVRKFKSPLIELLESGNIDLCFANEDEATELLRGEEKADPDAALEYLAKYCKWAVVTLAQNGCIAKHEKEFVRVPAIGEAKVTDATGAGDLFASGFLYGLVRGLSLEECCRVGSCSGGSVIRSLGGEVTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8590" e_stop="8418"/>
            <exon e_start="7201" e_stop="6938"/>
            <exon e_start="6855" e_stop="6784"/>
            <exon e_start="6671" e_stop="6633"/>
            <exon e_start="6425" e_stop="6318"/>
            <exon e_start="6027" e_stop="6020"/>
            <exon e_start="5821" e_stop="5747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.953"/>
          <exon-intron don_prob="0.000" acc_prob="0.937" e_score="0.875"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8590" e_stop="8418" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7201" e_stop="6938" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.957">
            <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6855" e_stop="6784" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6671" e_stop="6633" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="6425" e_stop="6318" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290"/>
          </intron>
          <exon e_serial="6" e_score="0.875">
            <gDNA_exon_boundary e_start="6027" e_stop="6020" e_length="8"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="6019" i_stop="5822" i_length="198"/>
          </intron>
          <exon e_serial="7" e_score="0.907">
            <gDNA_exon_boundary e_start="5821" e_stop="5747" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8590" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8589" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8583" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8582" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="6020"/>
              <exon start="5821" stop="5747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8563" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8562" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8556" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8555" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8554" stop="8418"/>
              <exon start="7201" stop="6940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8550" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA : GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG : TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG : GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG : TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG : ATGGTGAG : GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTT</gDNA_template>
            <first_frame> W  E  L  K  F  D  Q  P  P  L  M  V  K  I  K  V  K  V  *  I  *  V  H  Q  L  Y  L  D  Y  N  H  L  P  *  *  I  I  *  L  R  W  I  G  L  F  S  P  K  F  P  V  N  V  V  A  L  S  Q :   L  Q  L  K  S  *  S  I  Y  S  T  S  L  T  P  I  S  F  L  L  L  T  M  N  P  Y  *  R  L  *  L  E  V  A  L  Q  I  Q  L  E  G  W  L  L  V  L  G  L  V  V  G  S  L  G  L  V  A  K  M  K  K  V  N  Y  L  *  A  T  W  A  F  T  K  W  I  S  Q  D  *  D  *  R  M  E  L  Q  L  S :   V  F  V  W  L  T  K  L  A  I  V  P  C  V  H  V  C  L  A  L  *  K  F  R :   Q  M  N  *  K  E  R  T  S  K  V  L  S :   G  W  Y  *  D  M  P  Y  *  M  *  K  L  L  R  W  P  S  K  *  Q  R  K  K  V  F  L  F  L  *  I  L  P  A  L  R :   W  *   : G  V  K  R  K  Q  I  L  M  Q  H  L  N  I  W  L  N  I  A  S  G  L  L  S  P  </first_frame>
            <second_frame>  G  S  *  N  S  T  S  H  H  *  W  *  K  S  K  *  K  C  K  Y  R  C  T  S  C  T  W  T  T  T  I  C  P  S  R  S  Y  S  *  G  G  L  V  S  S  L  P  N  S  R  *  T  W  W  L  F  P   : S  C  S  *  R  V  E  V  Y  T  Q  R  A  *  R  P  Y  P  S  F  Y  *  Q  *  I  H  I  E  D  Y  S  W  R  *  R  C  K  Y  N  *  R  V  G  C  W  F  W  D  *  *  W  D  H  W  G  L  W  R  R  *  R  R  *  I  I  Y  E  Q  H  G  L  L  Q  S  G  S  L  K  I  E  I  E  E  W  N  Y  S  S   : V  C  L  S  G  *  R  S  W  Q  S  Y  H  A  S  M  F  V  W  L  C  E  S  S   : G  R  *  T  E  K  R  G  L  Q  R  F  *   : V  A  G  T  E  I  C  H  T  E  C  R  S  Y  *  G  G  H  Q  N  S  K  G  R  R  S  F  C  F  S  R  S  C  Q  L  *   : D  G  E  :  G  *  R  E  S  R  S  *  C  S  T  *  I  F  G  *  I  L  Q  V  G  C  C  H  L </second_frame>
            <third_frame>   G  V  E  I  R  P  A  T  I  N  G  E  N  Q  S  E  S  V  N  I  G  A  P  V  V  L  G  L  Q  P  F  A  L  V  D  H  I  A  K  V  D  W  S  L  L  S  Q  I  P  G  E  R  G  G  S  F  P  :  V  A  V  E  E  L  K  Y  I  L  N  E  L  N  A  H  I  L  P  S  T  D  N  E  S  I  L  K  T  I  A  G  G  S  V  A  N  T  I  R  G  L  A  A  G  F  G  I  S  S  G  I  I  G  A  C  G  E  D  E  E  G  K  L  F  M  S  N  M  G  F  Y  K  V  D  L  S  R  L  R  L  K  N  G  T  T  A  Q  :  C  V  C  L  V  D  E  V  G  N  R  T  M  R  P  C  L  S  G  S  V  K  V  Q  :  A  D  E  L  K  R  E  D  F  K  G  S  K  :  W  L  V  L  R  Y  A  I  L  N  V  E  V  I  K  V  A  I  K  I  A  K  E  E  G  L  F  V  S  L  D  L  A  S  F  E  :  M  V  R :   G  E  E  K  A  D  P  D  A  A  L  E  Y  L  A  K  Y  C  K  W  A  V  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8588" stop="8418"/>
                    <exon start="7201" stop="6938"/>
                    <exon start="6855" stop="6784"/>
                    <exon start="6671" stop="6633"/>
                    <exon start="6425" stop="6318"/>
                    <exon start="6027" stop="6020"/>
                    <exon start="5821" stop="5749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVEIRPATINGENQSESVNIGAPVVLGLQPFALVDHIAKVDWSLLSQIPGERGGSFPVAVEELKYILNELNAHILPSTDNESILKTIAGGSVANTIRGLAAGFGISSGIIGACGEDEEGKLFMSNMGFYKVDLSRLRLKNGTTAQCVCLVDEVGNRTMRPCLSGSVKVQADELKREDFKGSKWLVLRYAILNVEVIKVAIKIAKEEGLFVSLDLASFEMVRGEEKADPDAALEYLAKYCKWAVVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8583" e_stop="8472"/>
            <exon e_start="7201" e_stop="6938"/>
            <exon e_start="6855" e_stop="6784"/>
            <exon e_start="6671" e_stop="6633"/>
            <exon e_start="6425" e_stop="6318"/>
            <exon e_start="6027" e_stop="5930"/>
            <exon e_start="5821" e_stop="5710"/>
            <exon e_start="5331" e_stop="5150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="0.955"/>
          <exon-intron don_prob="0.976" acc_prob="0.957" e_score="0.970"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="8583" e_stop="8472" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8471" i_stop="7202" i_length="1270"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="7201" e_stop="6938" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.957">
            <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6855" e_stop="6784" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6671" e_stop="6633" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6425" e_stop="6318" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="5930" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.937">
            <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5821" e_stop="5710" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5331" e_stop="5150" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8583" stop="8472"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7059" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6979" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6943" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6793" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAG : GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG : TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG : GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG : TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG : ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG : GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG : TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</gDNA_template>
            <first_frame> *  N  S  T  S  H  H  *  W  *  K  S  K  *  K  C  K  Y  R  C  T  S  C  T  W  T  T  T  I  C  P  S  R  S  Y  S  *   : G  C  S  *  R  V  E  V  Y  T  Q  R  A  *  R  P  Y  P  S  F  Y  *  Q  *  I  H  I  E  D  Y  S  W  R  *  R  C  K  Y  N  *  R  V  G  C  W  F  W  D  *  *  W  D  H  W  G  L  W  R  R  *  R  R  *  I  I  Y  E  Q  H  G  L  L  Q  S  G  S  L  K  I  E  I  E  E  W  N  Y  S  S   : V  C  L  S  G  *  R  S  W  Q  S  Y  H  A  S  M  F  V  W  L  C  E  S  S   : G  R  *  T  E  K  R  G  L  Q  R  F  *   : V  A  G  T  E  I  C  H  T  E  C  R  S  Y  *  G  G  H  Q  N  S  K  G  R  R  S  F  C  F  S  R  S  C  Q  L  *   : D  G  E  E  V  *  I  T  S  N  *  I  I  G  V  G  K  H  R  P  L  L  R  K  R  G  *  S  N  *  A  A  K  :  G  *  R  E  S  R  S  *  C  S  T  *  I  F  G  *  I  L  Q  V  G  C  C  H  L  S  S  K  R  M  H  C  E  T  *  E  R   : V  C  A  C  S  S  N  W  R  S  E  S  Y  *  C  Y  R  C  R  R  S  V  C  K  W  I  F  V  W  I  G  K  R  T  V  T  G  G  M  L  S  G  G  F  L  Q  R  W  F  C  D  S  I  S  W  G  *  G  N  T  * </first_frame>
            <second_frame>  E  I  R  P  A  T  I  N  G  E  N  Q  S  E  S  V  N  I  G  A  P  V  V  L  G  L  Q  P  F  A  L  V  D  H  I  A  K  :  V  A  V  E  E  L  K  Y  I  L  N  E  L  N  A  H  I  L  P  S  T  D  N  E  S  I  L  K  T  I  A  G  G  S  V  A  N  T  I  R  G  L  A  A  G  F  G  I  S  S  G  I  I  G  A  C  G  E  D  E  E  G  K  L  F  M  S  N  M  G  F  Y  K  V  D  L  S  R  L  R  L  K  N  G  T  T  A  Q  :  C  V  C  L  V  D  E  V  G  N  R  T  M  R  P  C  L  S  G  S  V  K  V  Q  :  A  D  E  L  K  R  E  D  F  K  G  S  K  :  W  L  V  L  R  Y  A  I  L  N  V  E  V  I  K  V  A  I  K  I  A  K  E  E  G  L  F  V  S  L  D  L  A  S  F  E  :  M  V  R  K  F  K  S  P  L  I  E  L  L  E  S  G  N  I  D  L  C  F  A  N  E  D  E  A  T  E  L  L  R :   G  E  E  K  A  D  P  D  A  A  L  E  Y  L  A  K  Y  C  K  W  A  V  V  T  L  A  Q  N  G  C  I  A  K  H  E  K  E  :  F  V  R  V  P  A  I  G  E  A  K  V  T  D  A  T  G  A  G  D  L  F  A  S  G  F  L  Y  G  L  V  R  G  L  S  L  E  E  C  C  R  V  G  S  C  S  G  G  S  V  I  R  S  L  G  G  E  V  T  P   </second_frame>
            <third_frame>   K  F  D  Q  P  P  L  M  V  K  I  K  V  K  V  *  I  *  V  H  Q  L  Y  L  D  Y  N  H  L  P  *  *  I  I  *  L  R :   L  Q  L  K  S  *  S  I  Y  S  T  S  L  T  P  I  S  F  L  L  L  T  M  N  P  Y  *  R  L  *  L  E  V  A  L  Q  I  Q  L  E  G  W  L  L  V  L  G  L  V  V  G  S  L  G  L  V  A  K  M  K  K  V  N  Y  L  *  A  T  W  A  F  T  K  W  I  S  Q  D  *  D  *  R  M  E  L  Q  L  S :   V  F  V  W  L  T  K  L  A  I  V  P  C  V  H  V  C  L  A  L  *  K  F  R :   Q  M  N  *  K  E  R  T  S  K  V  L  S :   G  W  Y  *  D  M  P  Y  *  M  *  K  L  L  R  W  P  S  K  *  Q  R  K  K  V  F  L  F  L  *  I  L  P  A  L  R :   W  *  G  S  L  N  H  L  *  L  N  Y  W  S  R  E  T  *  T  F  A  S  Q  T  R  M  K  Q  L  S  C  *   : G  V  K  R  K  Q  I  L  M  Q  H  L  N  I  W  L  N  I  A  S  G  L  L  S  P  *  L  K  T  D  A  L  R  N  M  R  K  S :   L  C  V  F  Q  Q  L  A  K  R  K  L  L  M  L  Q  V  Q  E  I  C  L  Q  V  D  F  C  M  D  W  *  E  D  C  H  W  R  N  V  V  G  W  V  L  A  A  V  V  L  *  F  D  L  L  G  V  R  *  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8582" stop="8472"/>
                    <exon start="7201" stop="6938"/>
                    <exon start="6855" stop="6784"/>
                    <exon start="6671" stop="6633"/>
                    <exon start="6425" stop="6318"/>
                    <exon start="6027" stop="5930"/>
                    <exon start="5821" stop="5710"/>
                    <exon start="5331" stop="5152"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRPATINGENQSESVNIGAPVVLGLQPFALVDHIAKVAVEELKYILNELNAHILPSTDNESILKTIAGGSVANTIRGLAAGFGISSGIIGACGEDEEGKLFMSNMGFYKVDLSRLRLKNGTTAQCVCLVDEVGNRTMRPCLSGSVKVQADELKREDFKGSKWLVLRYAILNVEVIKVAIKIAKEEGLFVSLDLASFEMVRKFKSPLIELLESGNIDLCFANEDEATELLRGEEKADPDAALEYLAKYCKWAVVTLAQNGCIAKHEKEFVRVPAIGEAKVTDATGAGDLFASGFLYGLVRGLSLEECCRVGSCSGGSVIRSLGGEVTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16726" PGL_stop="10500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16726" e_stop="16454"/>
            <exon e_start="14258" e_stop="14115"/>
            <exon e_start="12597" e_stop="12472"/>
            <exon e_start="12402" e_stop="12251"/>
            <exon e_start="11414" e_stop="10500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16726" e_stop="16454" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14258" e_stop="14115" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12597" e_stop="12472" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.935">
            <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12402" e_stop="12251" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11414" e_stop="10500" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16726" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="10912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16664" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16658" stop="16454"/>
              <exon start="14258" stop="14151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16654" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16652" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16651" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16645" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16645" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16645" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16643" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16643" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16643" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16640" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16639" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16635" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16630" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16630" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16623" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16618" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16615" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16613" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16613" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16612" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16578" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16555" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16543" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16528" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16515" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="11099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12357" stop="12251"/>
              <exon start="11414" stop="10822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11343" stop="10839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="10822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11242" stop="10814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11239" stop="10938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11052" stop="10500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267750" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> R  H  V  V  F  T  I  L  P  Y  Q  L  L  C  G  K  P  S  F  L  T  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  I  V  L  L  Y  M  A  A  P  L  R  M  R  P  S  L  V  W  G  P  H  C  L  M  V  F  M  *  R  N  M  P  W  L  L  Q  E  P  L  *  N  R  T  Q  G  F  P  P  E  R :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </first_frame>
            <second_frame>  G  M  W  Y  S  L  F  C  P  T  N  Y  S  V  E  S  L  H  F  S  L  N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   S  *  C  C  C  T  W  L  H  H  *  G  *  G  L  H  W  Y  G  G  H  T  A  *  W  C  S  C  R  E  T  C  H  G  C  C  R  S  P  C  E  T  E  H  K  D  S  L  R  R   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </second_frame>
            <third_frame>   A  C  G  I  H  Y  S  A  L  P  I  T  L  W  K  A  F  I  S  H  S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  H  S  A  V  V  H  G  C  T  I  E  D  E  A  F  I  G  M  G  A  T  L  L  D  G  V  H  V  E  K  H  A  M  V  A  A  G  A  L  V  K  Q  N  T  R  I  P  S  G  E  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16598" stop="16454"/>
                    <exon start="14258" stop="14115"/>
                    <exon start="12597" stop="12472"/>
                    <exon start="12402" stop="12251"/>
                    <exon start="11414" stop="11130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGHSAVVHGCTIEDEAFIGMGATLLDGVHVEKHAMVAAGALVKQNTRIPSGEVWAGNPAKFLRKLTDEEIAFIAQSATNYCNLARVHAAENSKSFDEIEFEKMLRKKYAKRDEEYDSMIGVVRETPPELVLPDNILPEKAAKSIAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16664" e_stop="16454"/>
            <exon e_start="14258" e_stop="14115"/>
            <exon e_start="12597" e_stop="12472"/>
            <exon e_start="11414" e_stop="10500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16664" e_stop="16454" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14258" e_stop="14115" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12597" e_stop="12472" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12471" i_stop="11415" i_length="1057"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11414" e_stop="10500" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16664" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16658" stop="16454"/>
              <exon start="14258" stop="14151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16644" stop="16454"/>
              <exon start="14258" stop="14169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16639" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16630" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16556" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="11414" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11343" stop="10839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="10822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11242" stop="10814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11239" stop="10938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11052" stop="10500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267750" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </first_frame>
            <second_frame>  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </second_frame>
            <third_frame>   N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16598" stop="16454"/>
                    <exon start="14258" stop="14115"/>
                    <exon start="12597" stop="12472"/>
                    <exon start="11414" stop="11392"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGMGRQSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11215" stop="11000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSVKHLPSLYFLIISSPKKLLRASPNEISAQATLSFFAFQRFILHREHLYGEQSWILAVTLPNNIKLIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="10719" PGL_stop="11104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10719" e_stop="11104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10719" e_stop="11104" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10719" stop="11104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAAGGGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</gDNA_template>
            <first_frame> P  H  A  L  C  L  L  S  H  G  S  Q  *  C  M  E  S  Q  T  R  R  A  L  L  N  I  N  A  S  T  D  E  E  I  C  L  E  C  A  V  N  V  L  C  Y  S  N  N  N  L  P  N  K  S  I  E  N  D  F  S  E  L  Q  A  L  V  G  V  T  S  F  S  K  L  K  N  F  W  E  I  R  G  K  S  L  N  Y  K  A  V  T  Y  R  C  Y  P  I  S  L  I  L  F  G  R  V  T  A  N  I  H  D  C  S  P  Y  R  C  S  R  C  K  I  N  L  W  K  A  K   </first_frame>
            <second_frame>  H  M  H  C  A  Y  L  V  M  D  L  N  N  A  W  N  L  K  Q  E  G  H  C  *  T  *  M  L  Q  L  M  K  K  Y  V  W  N  V  L  S  M  F  Y  V  I  P  I  T  I  Y  Q  I  N  L  L  K  M  I  S  Q  S  Y  K  H  L  W  A  *  L  P  F  P  S  *  R  I  S  G  K  *  G  A  K  V  L  T  T  K  Q  *  R  T  D  A  I  Q  *  V  *  Y  Y  L  E  G  *  Q  P  I  S  M  T  V  L  H  T  D  A  H  G  V  K  *  I  S  G  K  Q  K  </second_frame>
            <third_frame>   T  C  T  V  L  T  *  S  W  I  S  I  M  H  G  I  S  N  K  K  G  I  A  K  H  K  C  F  N  *  *  R  N  M  F  G  M  C  C  Q  C  F  M  L  F  Q  *  Q  F  T  K  *  I  Y  *  K  *  F  L  R  V  T  S  T  C  G  R  N  F  L  F  Q  A  E  E  F  L  G  N  K  G  Q  K  S  *  L  Q  S  S  D  V  P  M  L  S  N  K  F  D  I  I  W  K  G  N  S  Q  Y  P  *  L  F  S  I  Q  M  L  T  V  *  N  K  S  L  E  S  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10758" stop="11102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMESQTRRALLNINASTDEEICLECAVNVLCYSNNNLPNKSIENDFSELQALVGVTSFSKLKNFWEIRGKSLNYKAVTYRCYPISLILFGRVTANIHDCSPYRCSRCKINLWKAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20339" PGL_stop="19490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20339" e_stop="20210"/>
            <exon e_start="20112" e_stop="19909"/>
            <exon e_start="19825" e_stop="19490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.651" acc_prob="1.000" e_score="0.931"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.961"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="20339" e_stop="20210" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.651" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20209" i_stop="20113" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="20112" e_stop="19909" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19908" i_stop="19826" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.875">
            <gDNA_exon_boundary e_start="19825" e_stop="19490" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20339" stop="20210"/>
              <exon start="20112" stop="19909"/>
              <exon start="19825" stop="19490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412832" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGG : CTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGA : CATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATCTGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAA</gDNA_template>
            <first_frame> A  E  I  P  Y  T  N  V  S  C  N  Y  F  A  G  Y  F  L  P  T  L  V  Q  P  G  V  T  A  P  P  R  D  K  V  I  I  P  G  D  G  N  V  K   : A  V  F  N  E  E  H  D  I  G  T  Y  T  I  K  A  I  D  D  P  R  T  L  N  K  T  L  Y  I  R  P  L  K  N  T  L  S  F  N  E  L  V  A  I  W  E  K  L  I  G  K  T  L  E  K  I  Y  V  P  E  E  Q  I  L  K  D  I  Q   : T  S  P  I  P  I  N  I  I  L  A  I  N  H  S  T  F  V  K  G  D  Q  T  N  F  E  I  E  P  S  F  G  V  E  A  S  E  L  Y  P  D  V  K  Y  T  T  V  E  E  Y  L  G  H  F  V  *  T  T  P  L  R  S  P  I  V  Q  I  N  C  *  M  M  S  V  I  R  H  F  I  W  K  Y  E  Y  L  F  T  M  S  S  E  T  R  *  M  V  C  F  *  V  C  F  *  C  P  H  C  V  V  L  *  *  </first_frame>
            <second_frame>  Q  K  F  P  I  L  M  S  H  V  T  I  L  L  V  I  S  Y  Q  L  W  S  S  Q  E  S  L  L  L  L  E  T  K  S  S  F  P  E  M  E  M  L  R  :  L  Y  S  M  K  N  M  I  L  A  P  T  P  L  R  L  L  M  T  R  E  R  *  T  R  P  F  T  S  G  L  S  R  T  P  Y  R  S  T  S  L  W  L  Y  G  R  N  *  L  V  K  L  S  R  K  S  T  F  Q  R  S  K  F  S  K  T  S  R  :  H  L  Q  Y  Q  S  I  S  Y  *  Q  S  T  T  Q  H  S  *  R  V  I  K  P  I  L  R  *  S  H  R  L  G  *  R  P  R  N  F  I  Q  M  L  S  T  L  Q  W  R  S  T  L  A  T  L  S  K  P  H  L  *  G  L  R  S  F  K  *  T  V  R  *  *  V  L  S  D  I  L  S  G  S  M  S  T  C  S  L  C  H  R  R  H  V  E  W  Y  V  F  K  S  V  F  S  V  H  T  V  *  Y  Y  N  E </second_frame>
            <third_frame>   R  N  S  L  Y  *  C  L  M  *  L  F  C  W  L  F  L  T  N  F  G  P  A  R  S  H  C  S  S  S  R  Q  S  H  H  S  R  R  W  K  C  *  G :   C  I  Q  *  R  T  *  Y  W  H  L  H  H  *  G  Y  *  *  P  E  N  V  E  Q  D  P  L  H  Q  A  S  Q  E  H  L  I  V  Q  R  A  C  G  Y  M  G  E  T  D  W  *  N  S  R  E  N  L  R  S  R  G  A  N  S  Q  R  H  P  D :   I  S  N  T  N  Q  Y  H  T  S  N  Q  P  L  N  I  R  E  G  *  S  N  Q  F  *  D  R  A  I  V  W  G  R  G  L  G  T  L  S  R  C  *  V  H  Y  S  G  G  V  P  W  P  L  C  L  N  H  T  F  E  V  S  D  R  S  N  K  L  L  D  D  E  C  Y  Q  T  F  Y  L  E  V  *  V  L  V  H  Y  V  I  G  D  T  L  N  G  M  F  L  S  L  F  L  V  S  T  L  C  S  T  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20339" stop="20210"/>
                    <exon start="20112" stop="19909"/>
                    <exon start="19825" stop="19659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEIPYTNVSCNYFAGYFLPTLVQPGVTAPPRDKVIIPGDGNVKAVFNEEHDIGTYTIKAIDDPRTLNKTLYIRPLKNTLSFNELVAIWEKLIGKTLEKIYVPEEQILKDIQTSPIPINIILAINHSTFVKGDQTNFEIEPSFGVEASELYPDVKYTTVEEYLGHFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24729" PGL_stop="23753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24729" e_stop="23753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="24729" e_stop="23753" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24729" stop="24300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24727" stop="24549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24442" stop="23753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</gDNA_template>
            <first_frame> L  A  K  I  K  C  S  I  C  S  Y  Q  F  N  I  *  Y  V  N  Q  *  F  T  R  Y  *  L  N  F  L  R  G  E  F  I  K  V  A  C  Y  L  G  S  R  V  S  P  M  R  C  T  T  A  W  A  W  H  T  P  P  N  L  L  Q  I  F  W  L  I  Y  C  V  M  *  S  N  S  N  L  S  V  D  I  L  C  N  V  F  L  L  C  L  Y  I  L  I  F  I  Y  L  I  L  Y  N  F  K  C  R  V  W  A  *  A  K  L  D  L  Q  R  N  I  I  L  V  K  I  E  H  C  F  *  I  L  F  D  N  L  K  V  N  N  E  Y  C  C  G  F  A  N  I  V  F  Q  *  *  S  P  L  M  N  *  L  S  C  F  T  S  P  V  C  *  S  T  T  A  L  T  I  S  A  T  E  I  M  P  T  T  F  P  S  I  T  G  T  C  R  M  W  C  S  V  I  I  K  R  S  I  T  F  P  *  C  I  K  H  Q  *  L  R  E  L  E  L  I  L  T  T  H  E  L  H  C  L  K  N  V  C  V  R  C  D  G  Y  Q  L  A  L  L  Q  W  *  Y  *  Y  L  S  T  K  Q  K  T  D  E  K  K  I  K  P  G  R  P  I  S  I  E  Y  L  L  G  H  N  I  S  D  S  C  V  F  R  *  S  I  L  Y  N  Y  L  S  Q  I  I  C  T  S  L  V  Q  C  A  *  M  N  K  F  N  I  V  C  I  T  K  D  Q  L  E   </first_frame>
            <second_frame>  W  L  R  S  S  V  V  S  V  L  I  S  L  I  S  D  M  *  I  N  D  S  H  D  I  N  S  I  F  *  G  E  S  S  S  R  *  L  A  T  W  A  L  V  C  R  L  C  V  A  L  L  H  G  P  G  T  P  H  Q  I  Y  F  K  S  F  G  *  Y  I  V  *  C  N  L  I  Q  I  F  R  L  I  Y  C  V  M  C  S  Y  Y  V  Y  T  Y  L  Y  L  F  I  *  F  Y  I  I  L  N  V  V  Y  G  H  K  L  S  *  I  Y  S  E  I  *  F  W  L  K  L  N  T  V  F  R  S  C  L  T  I  *  K  L  T  M  S  I  V  V  A  L  L  I  L  F  F  S  S  N  L  L  *  *  I  D  *  V  A  S  L  L  Q  F  V  D  P  P  L  L  *  Q  Y  P  P  Q  K  S  C  L  L  P  S  H  R  S  L  E  H  V  V  C  G  A  L  *  S  *  N  V  P  S  H  F  H  S  A  L  S  I  S  N  F  A  S  *  N  *  Y  L  P  L  M  S  C  I  A  *  R  M  F  V  S  D  V  T  V  I  S  L  L  C  C  N  G  S  T  N  I  *  A  Q  N  R  R  Q  M  K  K  R  *  S  Q  E  D  R  Y  L  *  S  T  C  S  V  I  I  S  P  T  L  V  Y  L  D  D  L  S  C  T  I  T  F  R  K  *  S  V  R  L  L  Y  N  V  H  R  *  I  S  S  T  L  C  V  L  L  K  I  N  *  R  </second_frame>
            <third_frame>   G  *  D  Q  V  *  Y  L  F  L  S  V  *  Y  L  I  C  E  S  M  I  H  T  I  L  T  Q  F  F  K  G  R  V  H  Q  G  S  L  L  L  G  L  S  C  V  A  Y  A  L  H  Y  C  M  G  L  A  H  P  T  K  S  T  S  N  L  L  V  D  I  L  C  N  V  I  *  F  K  S  F  G  *  Y  I  V  *  C  V  L  I  M  F  I  H  T  Y  I  Y  L  F  N  F  I  *  F  *  M  S  C  M  G  I  S  *  V  R  F  T  A  K  Y  N  F  G  *  N  *  T  L  F  L  D  L  V  *  Q  F  E  S  *  Q  *  V  L  L  W  L  C  *  Y  C  F  S  V  V  I  S  F  D  E  L  I  E  L  L  H  F  S  S  L  L  I  H  H  C  F  D  N  I  R  H  R  N  H  A  Y  Y  L  P  I  D  H  W  N  M  S  Y  V  V  L  C  D  H  K  T  F  H  H  I  S  I  V  H  *  A  S  V  T  S  R  V  R  T  N  T  Y  H  S  *  A  A  L  L  E  E  C  L  C  P  M  *  R  L  S  A  C  S  V  A  M  V  V  L  I  F  E  H  K  T  E  D  R  *  K  K  D  K  A  R  K  T  D  I  Y  R  V  P  A  R  S  *  Y  L  R  L  L  C  I  *  M  I  Y  P  V  Q  L  P  F  A  N  N  L  Y  V  S  C  T  M  C  I  D  E  *  V  Q  H  C  V  Y  Y  *  R  S  I  R  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24283" stop="24089"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCFSVVISFDELIELLHFSSLLIHHCFDNIRHRNHAYYLPIDHWNMSYVVLCDHKTFHHISIVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36713" PGL_stop="36541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36713" e_stop="36541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="36713" e_stop="36541" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36713" stop="36541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGATCTATATTTTGAAAACCTGAAATTCTCATCTCTTTTTCCTCATTACCACCACCTAATGCCATGATTTTTTTTTTTTTGTTAATTTAAAAAAAAAAAAAAAGAAACCCTAACCCTATGTCTAATGTTATGTGGGGGGGTGTGAAATTGAAGAAATGAAAGGAGGATGGG</gDNA_template>
            <first_frame> Q  D  L  Y  F  E  N  L  K  F  S  S  L  F  P  H  Y  H  H  L  M  P  *  F  F  F  F  C  *  F  K  K  K  K  K  E  T  L  T  L  C  L  M  L  C  G  G  V  *  N  *  R  N  E  R  R  M   </first_frame>
            <second_frame>  K  I  Y  I  L  K  T  *  N  S  H  L  F  F  L  I  T  T  T  *  C  H  D  F  F  F  F  V  N  L  K  K  K  K  K  K  P  *  P  Y  V  *  C  Y  V  G  G  C  E  I  E  E  M  K  G  G  W  </second_frame>
            <third_frame>   R  S  I  F  *  K  P  E  I  L  I  S  F  S  S  L  P  P  P  N  A  M  I  F  F  F  L  L  I  *  K  K  K  K  R  N  P  N  P  M  S  N  V  M  W  G  G  V  K  L  K  K  *  K  E  D  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37134" PGL_stop="38585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37134" e_stop="37187"/>
            <exon e_start="37966" e_stop="38585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="0.981"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="37134" e_stop="37187" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37188" i_stop="37965" i_length="778"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="37966" e_stop="38585" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37134" stop="37187"/>
              <exon start="37966" stop="38533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37981" stop="38585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37981" stop="38272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37981" stop="38270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38173" stop="38526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38281" stop="38526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATCAATTTGGACTACTATGCCACCTCAGCCTGTCAAAATGGCCTTCGGAG : GTAGCGGCGGAGGAAGTGGGGCAACAGACTCATCAAGTGAAGAACTTAATTTCAACACATATCATCATCAACAAGCAACATCAGTACCTCCACAACAACCATTTATGTTGGCTAAGAAAAGATTTAGGACAAAATTTAGTCAAGAACAGAAGGAAAAAATGTTGGAATTTGCTGAAAAATTAGGTTGGAGAATTCCAAGAGAAGATGATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCTATTTCTTACACTTCTCTTGTCACTGAAATTTAGACCACTCATGATGCCGCTTTATCGAG</gDNA_template>
            <first_frame> E  D  Q  F  G  L  L  C  H  L  S  L  S  K  W  P  S  E  :  V  A  A  E  E  V  G  Q  Q  T  H  Q  V  K  N  L  I  S  T  H  I  I  I  N  K  Q  H  Q  Y  L  H  N  N  H  L  C  W  L  R  K  D  L  G  Q  N  L  V  K  N  R  R  K  K  C  W  N  L  L  K  N  *  V  G  E  F  Q  E  K  M  M  L  K  Y  K  D  F  A  H  K  L  E  S  R  D  R  F  L  R  F  G  C  I  I  I  R  T  L  L  L  L  K  K  I  *  Y  K  K  I  N  L  N  *  F  C  L  I  K  V  L  R  E  K  M  K  L  N  F  L  G  F  G  L  C  L  C  N  L  T  R  N  R  T  *  L  V  F  F  V  F  F  L  G  G  S  M  *  Y  Y  C  N  Y  M  E  P  L  N  *  I  F  I  F  I  N  C  C  T  L  E  P  L  F  I  *  K  F  S  A  I  S  Y  T  S  L  V  T  E  I  *  T  T  H  D  A  A  L  S   </first_frame>
            <second_frame>  K  I  N  L  D  Y  Y  A  T  S  A  C  Q  N  G  L  R  R :   *  R  R  R  K  W  G  N  R  L  I  K  *  R  T  *  F  Q  H  I  S  S  S  T  S  N  I  S  T  S  T  T  T  I  Y  V  G  *  E  K  I  *  D  K  I  *  S  R  T  E  G  K  N  V  G  I  C  *  K  I  R  L  E  N  S  K  R  R  *  C  *  S  T  K  I  L  L  T  S  W  S  Q  E  T  G  F  *  G  L  D  A  *  *  *  E  P  F  F  C  *  K  K  Y  N  T  R  R  S  T  L  I  N  F  V  *  L  R  F  *  G  K  K  *  N  *  I  S  W  D  L  V  Y  A  Y  V  I  L  L  G  I  V  R  S  *  F  F  L  F  F  F  W  G  G  L  C  S  I  I  V  T  I  W  N  H  L  I  R  F  L  F  L  L  I  V  V  L  W  N  L  Y  S  S  E  N  F  Q  L  F  L  T  L  L  L  S  L  K  F  R  P  L  M  M  P  L  Y  R  </second_frame>
            <third_frame>   R  S  I  W  T  T  M  P  P  Q  P  V  K  M  A  F  G   : G  S  G  G  G  S  G  A  T  D  S  S  S  E  E  L  N  F  N  T  Y  H  H  Q  Q  A  T  S  V  P  P  Q  Q  P  F  M  L  A  K  K  R  F  R  T  K  F  S  Q  E  Q  K  E  K  M  L  E  F  A  E  K  L  G  W  R  I  P  R  E  D  D  A  E  V  Q  R  F  C  S  Q  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  N  K  N  P  S  S  A  K  K  N  I  I  Q  E  D  Q  P  *  L  I  L  F  N  *  G  F  E  G  K  N  E  I  K  F  L  G  I  W  F  M  L  M  *  S  Y  *  E  S  Y  V  A  S  F  F  C  F  F  F  G  G  V  Y  V  V  L  L  *  L  Y  G  T  T  *  L  D  F  Y  F  Y  *  L  L  Y  F  G  T  F  I  H  L  K  I  F  S  Y  F  L  H  F  S  C  H  *  N  L  D  H  S  *  C  R  F  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37136" stop="37187"/>
                    <exon start="37966" stop="38297"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSIWTTMPPQPVKMAFGGSGGGSGATDSSSEELNFNTYHHQQATSVPPQQPFMLAKKRFRTKFSQEQKEKMLEFAEKLGWRIPREDDAEVQRFCSQVGVKRQVFKVWMHNNKNPSSAKKNIIQEDQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="41431" PGL_stop="40824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41431" e_stop="40824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="41431" e_stop="40824" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41431" stop="40824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41430" stop="40903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41430" stop="40946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</gDNA_template>
            <first_frame> F  Q  G  Q  R  V  C  *  H  P  R  V  H  L  S  I  V  L  G  F  G  L  N  *  Y  Q  S  S  R  Q  L  A  L  L  F  L  H  L  L  C  L  S  C  *  N  V  V  I  L  R  Q  R  L  Q  E  L  L  A  I  L  L  V  C  *  A  *  *  I  *  S  S  L  T  S  Q  F  T  M  I  L  S  K  N  L  L  K  F  L  G  L  L  G  *  I  L  W  Q  F  L  L  H  M  A  *  L  R  M  A  H  L  F  Q  H  H  G  E  V  V  S  L  T  N  F  R  R  I  K  S  S  C  Q  V  L  G  L  M  K  T  K  *  T  L  K  F  L  L  *  M  K  I  Q  M  R  L  L  K  M  E  L  K  V  K  Y  G  F  H  L  L  A  M  L  L  D  I  *  H  I  P  L  *  L  N  K  C  S  T  P  R  L  K  T  R  R  E  N  A  M  F  E  Q  G  I   </first_frame>
            <second_frame>  F  R  G  N  V  C  V  D  I  P  E  Y  I  C  Q  S  S  *  D  L  A  *  I  D  I  R  V  Q  G  N  L  H  S  C  S  F  I  C  F  A  S  R  V  E  T  W  S  Y  *  G  N  G  Y  R  N  C  *  Q  S  Y  *  Y  V  E  L  D  E  F  D  H  R  *  R  A  N  L  Q  *  F  Y  R  R  I  C  *  S  F  *  A  F  W  A  K  S  F  G  N  F  S  F  I  W  L  S  *  E  W  H  I  C  F  N  I  M  E  K  *  *  V  *  Q  I  F  D  V  *  K  A  L  A  K  C  *  A  *  *  R  P  S  R  H  *  N  S  C  C  E  *  R  Y  K  *  D  C  *  R  W  N  *  R  *  N  M  D  F  I  S  *  Q  C  Y  W  I  F  S  T  S  L  S  N  S  T  S  V  Q  R  H  A  *  K  Q  G  G  K  M  L  C  S  N  R  G  *  </second_frame>
            <third_frame>   S  G  A  T  C  V  L  T  S  P  S  T  F  V  N  R  P  R  I  W  L  E  L  I  S  E  F  K  A  T  C  T  P  V  P  S  F  A  L  P  L  V  L  K  R  G  H  T  E  A  T  V  T  G  T  V  S  N  P  I  S  M  L  S  L  M  N  L  I  I  V  N  E  P  I  Y  N  D  S  I  E  E  F  V  E  V  F  R  P  F  G  L  N  P  L  A  I  S  P  S  Y  G  L  A  E  N  G  T  F  V  S  T  S  W  R  S  S  K  F  N  K  F  S  T  Y  K  K  L  L  P  S  A  R  L  D  E  D  Q  V  D  I  E  I  L  V  V  N  E  D  T  N  E  I  V  E  D  G  I  E  G  E  I  W  I  S  S  P  S  N  A  I  G  Y  L  A  H  P  S  L  T  Q  Q  V  F  N  A  T  L  K  N  K  A  G  K  C  Y  V  R  T  G  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41429" stop="40824"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGATCVLTSPSTFVNRPRIWLELISEFKATCTPVPSFALPLVLKRGHTEATVTGTVSNPISMLSLMNLIIVNEPIYNDSIEEFVEVFRPFGLNPLAISPSYGLAENGTFVSTSWRSSKFNKFSTYKKLLPSARLDEDQVDIEILVVNEDTNEIVEDGIEGEIWISSPSNAIGYLAHPSLTQQVFNATLKNKAGKCYVRTGDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="45508" PGL_stop="43779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45508" e_stop="45407"/>
            <exon e_start="44072" e_stop="43779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45508" e_stop="45407" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="45406" i_stop="44073" i_length="1334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44072" e_stop="43779" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45407"/>
              <exon start="44072" stop="43779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG : GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</gDNA_template>
            <first_frame> F  *  C  *  F  T  A  A  D  I  V  N  A  A  A  A  T  T  T  T  S  A  V  L  G  S  Y  *  W  D  S  *  C  W  :  E  L  S  D  L  R  V  *  G  C  E  Q  P  S  *  I  I  *  G  A  K  D  A  N  Q  A  *  V  *  I  W  W  N  L  R  A  C  *  L  E  K  S  G  S  N  E  D  T  L  S  Y  A  F  H  I  L  N  M  Y  C  T  R  L  F  H  L  R  L  Y  *  N  F  V  Y  T  H  S  *  N  K  G  *  K  M  K  H  K  S  I  E  V  K  I  F  L  I  W  F </first_frame>
            <second_frame>  S  N  V  S  L  Q  Q  Q  I  L  S  M  Q  Q  Q  Q  Q  Q  Q  H  Q  Q  F  L  D  P  I  N  G  I  L  N  V  G :   S  *  V  I  *  G  S  K  D  A  N  N  Q  A  K  *  F  K  G  L  R  M  Q  T  K  L  K  Y  E  S  G  G  I  *  E  L  A  N  W  K  R  A  G  P  M  K  T  H  *  V  M  P  F  I  F  S  T  C  T  A  H  V  Y  S  I  Y  V  Y  I  K  I  L  C  I  H  I  L  E  I  K  V  E  K  *  N  I  K  V  L  K  *  K  S  F  L  F  G   </second_frame>
            <third_frame>   L  M  L  V  Y  S  S  R  Y  C  Q  C  S  S  S  N  N  N  N  I  S  S  S  W  I  L  L  M  G  F  L  M  L   : G  A  K  *  F  K  G  L  R  M  R  T  T  K  L  N  N  L  R  G  *  G  C  K  P  S  L  S  M  N  L  V  E  F  K  S  L  L  I  G  K  E  R  V  Q  *  R  H  T  K  L  C  L  S  Y  S  Q  H  V  L  H  T  F  I  P  S  T  F  I  L  K  F  C  V  Y  T  F  L  K  *  R  L  K  N  E  T  *  K  Y  *  S  E  N  L  S  Y  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="46471" PGL_stop="45609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46471" e_stop="45609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="46471" e_stop="45609" e_length="863"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46471" stop="45825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46471" stop="45980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46374" stop="45609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46374" stop="45677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46374" stop="45723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46364" stop="45825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGACCTTCAATCTTGTAAATCTTCATTAACGACTTCCCCTGTGTTGAATCCCTCAATTGATCACCATTTGCAGTTCTCTTTCCTTCATCAATGGCTGGAGAATCAGAATCTGCTGCTGAACCTAACCCTAACACCCTCACCCCATCAAATCCCCCTTCTGCCGACGCCATTAATATTGTACCTCTTCAAACTCATTCACCACCCACCAAGCTACCTTCTCGACCCAGAAAAACTCGGAAGCTTTCCAATACTGTTGATCCCTGTTTACCCAAAACCCAGATTTCCACCATCGTACCAAGAATTGTTTCTCGTTCACTTTCATACGAAGGTGAGCTCGAATCCGCCATTAATTACCTCAAATCCTCTGACCCATTACTCTCTCCATTAATTGAAACATACCCACCTCCCACACTCGAACTTTTTCAACCCCCTTTTCTTGCTTTAACAAAAAGCATTCTGTTTCAGCAGCTAGCGTATAAAGCTGGGTCATCGATTTACACTCGATTTATATCTCTTTGTGGTGGGGAATCGAATGTGGTGCCGGATATGGTTTTGGGATTAACCCCACAACAGCTTCGTCAAATTGGGGTTTCTGCTAGAAAAGCAAGCTATTTACATGACCTAGCAAGGAAGTATCAAAATGGGATTTTGTCGGATAAGTCGATTGTGGATATGGATGATAAATCGCTTTTTACAATGCTTACTATGGTGAATGGAATTGGGTCTTGGTCAGTTCATATGTTTATGATTTTTTCACTTCATAGGCCGGATGTGTTGCCGATACATGATCTTGGTATTAGGAAAGGGGTGAGAATGTTATATGGTCTTGAGGATCTTCCTAGGCCATCACAAATGGATCAGT</gDNA_template>
            <first_frame> T  T  F  N  L  V  N  L  H  *  R  L  P  L  C  *  I  P  Q  L  I  T  I  C  S  S  L  S  F  I  N  G  W  R  I  R  I  C  C  *  T  *  P  *  H  P  H  P  I  K  S  P  F  C  R  R  H  *  Y  C  T  S  S  N  S  F  T  T  H  Q  A  T  F  S  T  Q  K  N  S  E  A  F  Q  Y  C  *  S  L  F  T  Q  N  P  D  F  H  H  R  T  K  N  C  F  S  F  T  F  I  R  R  *  A  R  I  R  H  *  L  P  Q  I  L  *  P  I  T  L  S  I  N  *  N  I  P  T  S  H  T  R  T  F  S  T  P  F  S  C  F  N  K  K  H  S  V  S  A  A  S  V  *  S  W  V  I  D  L  H  S  I  Y  I  S  L  W  W  G  I  E  C  G  A  G  Y  G  F  G  I  N  P  T  T  A  S  S  N  W  G  F  C  *  K  S  K  L  F  T  *  P  S  K  E  V  S  K  W  D  F  V  G  *  V  D  C  G  Y  G  *  *  I  A  F  Y  N  A  Y  Y  G  E  W  N  W  V  L  V  S  S  Y  V  Y  D  F  F  T  S  *  A  G  C  V  A  D  T  *  S  W  Y  *  E  R  G  E  N  V  I  W  S  *  G  S  S  *  A  I  T  N  G  S   </first_frame>
            <second_frame>  R  P  S  I  L  *  I  F  I  N  D  F  P  C  V  E  S  L  N  *  S  P  F  A  V  L  F  P  S  S  M  A  G  E  S  E  S  A  A  E  P  N  P  N  T  L  T  P  S  N  P  P  S  A  D  A  I  N  I  V  P  L  Q  T  H  S  P  P  T  K  L  P  S  R  P  R  K  T  R  K  L  S  N  T  V  D  P  C  L  P  K  T  Q  I  S  T  I  V  P  R  I  V  S  R  S  L  S  Y  E  G  E  L  E  S  A  I  N  Y  L  K  S  S  D  P  L  L  S  P  L  I  E  T  Y  P  P  P  T  L  E  L  F  Q  P  P  F  L  A  L  T  K  S  I  L  F  Q  Q  L  A  Y  K  A  G  S  S  I  Y  T  R  F  I  S  L  C  G  G  E  S  N  V  V  P  D  M  V  L  G  L  T  P  Q  Q  L  R  Q  I  G  V  S  A  R  K  A  S  Y  L  H  D  L  A  R  K  Y  Q  N  G  I  L  S  D  K  S  I  V  D  M  D  D  K  S  L  F  T  M  L  T  M  V  N  G  I  G  S  W  S  V  H  M  F  M  I  F  S  L  H  R  P  D  V  L  P  I  H  D  L  G  I  R  K  G  V  R  M  L  Y  G  L  E  D  L  P  R  P  S  Q  M  D  Q  </second_frame>
            <third_frame>   D  L  Q  S  C  K  S  S  L  T  T  S  P  V  L  N  P  S  I  D  H  H  L  Q  F  S  F  L  H  Q  W  L  E  N  Q  N  L  L  L  N  L  T  L  T  P  S  P  H  Q  I  P  L  L  P  T  P  L  I  L  Y  L  F  K  L  I  H  H  P  P  S  Y  L  L  D  P  E  K  L  G  S  F  P  I  L  L  I  P  V  Y  P  K  P  R  F  P  P  S  Y  Q  E  L  F  L  V  H  F  H  T  K  V  S  S  N  P  P  L  I  T  S  N  P  L  T  H  Y  S  L  H  *  L  K  H  T  H  L  P  H  S  N  F  F  N  P  L  F  L  L  *  Q  K  A  F  C  F  S  S  *  R  I  K  L  G  H  R  F  T  L  D  L  Y  L  F  V  V  G  N  R  M  W  C  R  I  W  F  W  D  *  P  H  N  S  F  V  K  L  G  F  L  L  E  K  Q  A  I  Y  M  T  *  Q  G  S  I  K  M  G  F  C  R  I  S  R  L  W  I  W  M  I  N  R  F  L  Q  C  L  L  W  *  M  E  L  G  L  G  Q  F  I  C  L  *  F  F  H  F  I  G  R  M  C  C  R  Y  M  I  L  V  L  G  K  G  *  E  C  Y  M  V  L  R  I  F  L  G  H  H  K  W  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46410" stop="45610"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPFAVLFPSSMAGESESAAEPNPNTLTPSNPPSADAINIVPLQTHSPPTKLPSRPRKTRKLSNTVDPCLPKTQISTIVPRIVSRSLSYEGELESAINYLKSSDPLLSPLIETYPPPTLELFQPPFLALTKSILFQQLAYKAGSSIYTRFISLCGGESNVVPDMVLGLTPQQLRQIGVSARKASYLHDLARKYQNGILSDKSIVDMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPIHDLGIRKGVRMLYGLEDLPRPSQMDQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="53404" PGL_stop="59292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53404" e_stop="53773"/>
            <exon e_start="54761" e_stop="54823"/>
            <exon e_start="54903" e_stop="54992"/>
            <exon e_start="55094" e_stop="55153"/>
            <exon e_start="55257" e_stop="55322"/>
            <exon e_start="55423" e_stop="55488"/>
            <exon e_start="55581" e_stop="55656"/>
            <exon e_start="56330" e_stop="56394"/>
            <exon e_start="56484" e_stop="56576"/>
            <exon e_start="56685" e_stop="56768"/>
            <exon e_start="56855" e_stop="56939"/>
            <exon e_start="57532" e_stop="57578"/>
            <exon e_start="57729" e_stop="57791"/>
            <exon e_start="57873" e_stop="57932"/>
            <exon e_start="58028" e_stop="58093"/>
            <exon e_start="58188" e_stop="58247"/>
            <exon e_start="58543" e_stop="58657"/>
            <exon e_start="58937" e_stop="59292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.949"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.739" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.025" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.512" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="53404" e_stop="53773" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="53774" i_stop="54760" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54761" e_stop="54823" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54824" i_stop="54902" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54903" e_stop="54992" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="54993" i_stop="55093" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55094" e_stop="55153" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.825">
            <gDNA_intron_boundary i_start="55154" i_stop="55256" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55257" e_stop="55322" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55323" i_stop="55422" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55423" e_stop="55488" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.773" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55489" i_stop="55580" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55581" e_stop="55656" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.739" acc_prob="0.961">
            <gDNA_intron_boundary i_start="55657" i_stop="56329" i_length="673"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56330" e_stop="56394" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.784">
            <gDNA_intron_boundary i_start="56395" i_stop="56483" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56484" e_stop="56576" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="56685" e_stop="56768" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.025" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="56855" e_stop="56939" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="57532" e_stop="57578" e_length="47"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57729" e_stop="57791" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.722" acc_prob="0.988">
            <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="57873" e_stop="57932" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.512" acc_prob="0.974">
            <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="58028" e_stop="58093" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.759" acc_prob="0.506">
            <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="58188" e_stop="58247" e_length="60"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="58543" e_stop="58657" e_length="115"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="0.511">
            <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279"/>
          </intron>
          <exon e_serial="18" e_score="0.997">
            <gDNA_exon_boundary e_start="58937" e_stop="59292" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53404" stop="53772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53482" stop="53773"/>
              <exon start="54761" stop="54823"/>
              <exon start="54903" stop="54992"/>
              <exon start="55094" stop="55153"/>
              <exon start="55257" stop="55322"/>
              <exon start="55423" stop="55488"/>
              <exon start="55581" stop="55656"/>
              <exon start="56330" stop="56394"/>
              <exon start="56484" stop="56576"/>
              <exon start="56685" stop="56768"/>
              <exon start="56855" stop="56939"/>
              <exon start="57532" stop="57578"/>
              <exon start="57729" stop="57791"/>
              <exon start="57873" stop="57932"/>
              <exon start="58028" stop="58093"/>
              <exon start="58188" stop="58247"/>
              <exon start="58543" stop="58657"/>
              <exon start="58937" stop="59290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56532" stop="56576"/>
              <exon start="56685" stop="56768"/>
              <exon start="56855" stop="56939"/>
              <exon start="57532" stop="57578"/>
              <exon start="57729" stop="57791"/>
              <exon start="57873" stop="57932"/>
              <exon start="58028" stop="58093"/>
              <exon start="58188" stop="58247"/>
              <exon start="58543" stop="58657"/>
              <exon start="58937" stop="58997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57877" stop="57932"/>
              <exon start="58028" stop="58093"/>
              <exon start="58188" stop="58247"/>
              <exon start="58543" stop="58657"/>
              <exon start="58937" stop="59183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58598" stop="58657"/>
              <exon start="58937" stop="59292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTTCCTTATCTCAAGTCTTCTTTAAGTATATCTATTTTAATTAAATACTCTTTTCAGATTAACATCAACATTCTTGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT : TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG : TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG : TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA : GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG : GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG : CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG : GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG : GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG : AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG : GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG : GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG : GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT : GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG : GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG : TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG : ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG : GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAAAT</gDNA_template>
            <first_frame> H  I  S  L  S  Q  V  F  F  K  Y  I  Y  F  N  *  I  L  F  S  D  *  H  Q  H  S  C  *  F  Q  Y  F  Q  Q  L  H  F  S  *  S  V  V  Q  I  S  R  T  I  E  K  R  G  *  L  K  I  *  R  K  K  N  E  F  Q  R  R  E  Q  *  R  G  S  E  K  A  I  F  T  Y  W  E  L  V  S  Y  G  V  K  T  V  *  Y  D  G  F  F  S  S  Y  S  *  *  F  Y  F  C  S  C  L  C  S  H  S  C  F  G  P  N  P  V  W  F  H   : L  W  L  H  F  T  N  A  N  C  N  Y  Q  R  S  E  A  H  C  F  *   : V  L  F  V  R  F  F  I  Q  C  G  C  Y  G  W  C  N  I  *  W  S  N  F  *  V  H  W  A  K  R   : V  F  N  D  S  C  Y  T  K  Y  H  W  L  A  C  H  L  I  C  Q   : R  S  F  F  S  I  H  G  K  I  V  G  G  L  W  C  G  N  N  L  L  C   : G  S  C  I  Y  C  *  D  C  T  S  E  Y  E  R  G  S  R  V  C  *  P   : A  L  C  Y  N  W  D  H  V  V  L  F  T  G  T  F  C  *  L  E  A  A  C  C  S  W :   S  I  T  L  P  S  T  D  T  W  T  I  F  H  P  R  I  S  S  V  V   : G  Q  N  G  F  N  R  R  F  *  N  F  V  A  S  S  S  R  L  *  G  *  Y  Y  Q  *  S  K  *  N  *   : E  V  C  S  I  I  N  K  P  K  N  S  N  A  F  C  G  S  Q  T  *  K  I  L  V  S  S  H   : G  R  N  W  T  T  Y  P  A  T  V  R  R  N  Q  R  C  Y  I  L  F  Q  Q  H  F  P  I  C  R :   Y  F  V  K  *  C  C  N  F  W  C  R  C  Y  T   : G  C  C  N  C  S  F  Y  M  A  G  G  Q  N  W  T  *  N  F  I  N   : C  F  L  G  W  N  G  C  *  S  S  Y  C  L  R  C  L  L  S  K   : G  L  C  I  *  G  F  Y  P  L  W  C  L  G  N  S  V  R  S  W  G  G   : V  H  D  Y  F  I  L  A  R  N  G  T  N  S  M  A  Y  N  V  *   : D  S  S  N  Q  D  Q  R  S  R  W  K  Y  G  N  I  S  Q  L  V  I  L  V  G  N  N  S  D  C  T  V  A  Y  G  L  E  Q  W  R :   N  L  H  Y  L  H  G  Y  V  C  F  H  R  G  V  R  G  N  L  G  T  G  D  E  R  E  N  S  R  G  N  S  V  F  F  Q  M  K  T  Y  P  L  P  N  R  P  L  *  S  F  V  L  F  V  T  K  L  N  F  P  C  A  K  V  S  I  F  H  I  Y  R  E  E  *  V  A  H  A  A  S  E  C  V  H  F  I  L  I  L  P  F  A  V  I  Y  C  M  I  L  L  F  L  Y  I  L  S  V  I  I  P  F  N  L  K  *  S  A  K  </first_frame>
            <second_frame>  I  F  P  Y  L  K  S  S  L  S  I  S  I  L  I  K  Y  S  F  Q  I  N  I  N  I  L  A  N  S  S  I  F  N  N  F  I  F  L  D  L  *  F  K  F  Q  E  L  *  R  K  G  V  D  S  K  F  E  E  K  K  M  S  F  R  E  E  N  N  E  G  D  L  K  K  P  F  L  H  T  G  S  W  Y  R  M  G  S  R  Q  S  S  M  M  G  S  S  Q  A  I  R  D  S  S  I  S  V  L  A  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  T  S  P  T  Q  I  A  I  T  K  D  L  K  L  T  V  S  E  :  F  S  L  F  G  S  L  S  N  V  G  A  M  V  G  A  I  S  S  G  Q  I  S  E  Y  I  G  R  K  G  :  S  L  M  I  A  A  I  P  N  I  I  G  W  L  A  I  S  F  A  K  :  D  P  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  A  P  Q  N  M  R  G  G  L  G  S  V  N  Q  :  L  S  V  T  I  G  I  M  L  S  Y  L  L  G  L  F  V  N  W  R  L  L  A  V  L   : G  A  L  P  C  L  A  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  M  G  L  T  E  D  F  E  T  S  L  Q  V  L  R  G  F  E  A  D  I  T  N  E  V  N  E  I  K  :  R  S  V  A  S  S  T  N  R  R  T  A  M  R  F  A  D  L  K  H  R  R  Y  W  F  P  L  M  :  V  G  I  G  L  L  I  L  Q  Q  L  G  G  I  N  G  V  I  F  Y  S  S  N  I  F  L  S  A   : G  I  S  S  S  N  A  A  T  F  G  V  G  A  I  Q  :  V  V  A  T  A  V  S  T  W  L  V  D  R  T  G  R  R  I  L  L  I  :  V  S  S  A  G  M  A  V  S  L  L  I  V  S  V  A  F  Y  L  K  :  G  Y  V  S  E  D  S  T  L  Y  G  V  L  G  I  V  S  V  V  G  V  V  :  F  M  I  I  S  F  S  L  G  M  G  P  I  P  W  L  I  M  S  E  :  I  L  P  I  K  I  K  G  L  A  G  S  T  A  T  L  A  N  W  L  F  S  W  V  I  T  V  T  A  P  L  L  M  A  W  S  S  G   : G  T  F  T  I  Y  M  V  M  C  A  F  T  V  A  F  V  A  I  W  V  P  E  T  K  G  R  T  L  E  E  I  Q  F  S  F  R  *  K  L  T  P  S  Q  T  G  L  C  D  P  L  F  F  L  S  Q  N  S  I  S  L  V  Q  K  F  Q  F  F  T  Y  I  G  K  N  E  L  H  M  L  L  Q  S  V  Y  I  S  S  *  S  C  H  L  L  *  F  T  V  *  F  Y  Y  F  C  I  F  *  V  *  L  Y  H  S  I  *  N  K  V  R  N </second_frame>
            <third_frame>   Y  F  L  I  S  S  L  L  *  V  Y  L  F  *  L  N  T  L  F  R  L  T  S  T  F  L  L  I  P  V  F  S  T  T  S  F  F  L  I  C  S  S  N  F  K  N  Y  R  E  K  G  L  T  Q  N  L  K  K  K  K  *  V  S  E  K  R  T  M  K  G  I  *  K  S  H  F  Y  I  L  G  V  G  I  V  W  G  Q  D  S  L  V  *  W  V  L  L  K  L  F  V  I  V  L  F  L  F  L  L  V  F  S  *  L  L  W  A  Q  S  S  L  V  S  L :   V  A  T  L  H  Q  R  K  L  Q  L  P  K  I  *  S  S  L  F  L  S :   S  L  C  S  V  L  Y  P  M  W  V  L  W  L  V  Q  Y  L  V  V  K  F  L  S  T  L  G  E  K  G :   L  *  *  *  L  L  Y  Q  I  S  L  V  G  L  P  S  H  L  P  K :   I  L  L  F  Y  T  W  E  D  C  W  R  A  L  V  W  E  *  S  L  M  W :   F  L  Y  I  L  L  R  L  H  L  R  I  *  E  G  V  *  G  L  L  T  S :   S  L  L  Q  L  G  S  C  C  P  I  Y  W  D  F  L  L  I  G  G  C  L  L  F  L  :  E  H  Y  L  A  *  H  *  Y  L  D  Y  F  S  S  P  N  L  L  G  G  W :   P  K  W  V  *  Q  K  I  L  K  L  R  C  K  F  F  E  A  L  R  L  I  L  P  M  K  *  M  K  L  R :   G  L  *  H  H  Q  Q  T  E  E  Q  Q  C  V  L  R  I  S  N  I  E  D  I  G  F  L  S  W :   *  E  L  D  Y  L  S  C  N  S  *  E  E  S  T  V  L  Y  S  I  P  A  T  F  S  Y  L  P  :  V  F  R  Q  V  M  L  Q  L  L  V  S  V  L  Y  R :   L  L  Q  L  Q  F  L  H  G  W  W  T  E  L  D  V  E  F  Y  *  L :   F  P  R  L  E  W  L  L  V  F  L  L  S  P  L  P  S  I  *  R :   V  M  Y  L  R  I  L  P  S  M  V  S  W  E  *  C  P  *  L  G  W  C :   S  *  L  F  H  S  R  S  E  W  D  Q  F  H  G  L  *  C  L  R :   F  F  Q  S  R  S  K  V  S  L  E  V  R  Q  H  *  P  T  G  Y  S  R  G  *  *  Q  *  L  H  R  C  L  W  L  G  A  V  E  :  E  P  S  L  F  T  W  L  C  V  L  S  P  W  R  S  W  Q  F  G  Y  R  R  R  K  G  E  L  *  R  K  F  S  F  L  S  D  E  N  L  P  P  P  K  Q  A  F  V  I  L  C  S  F  C  H  K  T  Q  F  P  L  C  K  S  F  N  F  S  H  I  *  G  R  M  S  C  T  C  C  F  R  V  C  T  F  H  L  D  L  A  I  C  C  N  L  L  Y  D  F  I  I  F  V  Y  S  K  C  D  Y  T  I  Q  F  K  I  K  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53549" stop="53773"/>
                    <exon start="54761" stop="54823"/>
                    <exon start="54903" stop="54992"/>
                    <exon start="55094" stop="55153"/>
                    <exon start="55257" stop="55322"/>
                    <exon start="55423" stop="55488"/>
                    <exon start="55581" stop="55656"/>
                    <exon start="56330" stop="56394"/>
                    <exon start="56484" stop="56576"/>
                    <exon start="56685" stop="56768"/>
                    <exon start="56855" stop="56939"/>
                    <exon start="57532" stop="57578"/>
                    <exon start="57729" stop="57791"/>
                    <exon start="57873" stop="57932"/>
                    <exon start="58028" stop="58093"/>
                    <exon start="58188" stop="58247"/>
                    <exon start="58543" stop="58657"/>
                    <exon start="58937" stop="59049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGVDSKFEEKKMSFREENNEGDLKKPFLHTGSWYRMGSRQSSMMGSSQAIRDSSISVLACVLIVALGPIQFGFTCGYTSPTQIAITKDLKLTVSEFSLFGSLSNVGAMVGAISSGQISEYIGRKGSLMIAAIPNIIGWLAISFAKDPSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLSYLLGLFVNWRLLAVLGALPCLALIPGLFFIPESPRWLAKMGLTEDFETSLQVLRGFEADITNEVNEIKRSVASSTNRRTAMRFADLKHRRYWFPLMVGIGLLILQQLGGINGVIFYSSNIFLSAGISSSNAATFGVGAIQVVATAVSTWLVDRTGRRILLIVSSAGMAVSLLIVSVAFYLKGYVSEDSTLYGVLGIVSVVGVVFMIISFSLGMGPIPWLIMSEILPIKIKGLAGSTATLANWLFSWVITVTAPLLMAWSSGGTFTIYMVMCAFTVAFVAIWVPETKGRTLEEIQFSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="63343" PGL_stop="61312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63343" e_stop="61312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="63343" e_stop="61312" e_length="2032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63343" stop="62786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63340" stop="62606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63333" stop="62791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63290" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62922" stop="62343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62876" stop="61985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62845" stop="62262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62603" stop="62114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62459" stop="62034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62299" stop="61571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61921" stop="61429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="61444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61630" stop="61312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</gDNA_template>
            <first_frame> K  K  S  A  S  V  V  V  *  *  R  E  E  E  E  E  *  E  R  F  *  S  L  S  N  S  L  I  S  P  I  Y  S  L  S  F  S  P  P  P  *  T  E  P  P  A  R  K  S  T  P  R  T  A  V  V  V  S  Q  S  E  F  R  S  S  R  V  G  G  C  R  I  S  F  R  V  *  T  *  S  T  L  N  *  V  T  I  T  *  S  L  I  C  *  L  Y  V  *  F  L  *  W  L  *  F  *  L  K  L  H  K  *  I  L  M  I  F  V  N  Y  G  Y  I  C  S  I  I  *  S  L  L  L  F  V  P  P  F  W  F  L  D  P  Q  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L  R  K  *  V  C  L  L  *  I  V  V  C  S  I  R  L  H  R  F  Q  L  *  L  *  T  S  I  S  *  E  V  I  *  G  V  L  I  W  E  V  W  V  V  V  L  V  *  L  P  L  I  L  L  R  T  C  C  K  C  T  E  I  P  M  L  L  L  L  V  L  R  I  L  R  R  T  G  I  L  G  I  R  S  P  C  *  Y  Q  I  V  C  L  E  S  E  V  L  L  F  C  C  L  T  S  P  W  I  E  E  G  R  N  I  S  L  F  M  L  L  G  H  I  V  G  L  M  I  R  H  F  V  V  F  T  K  N  R  M  M  L  G  K  L  G  F  L  C  Q  K  I  S  W  Q  S  L  V  E  R  L  R  R  I  S  L  H  W  V  L  L  F  Y  P  S  V  S  S  F  C  S  L  V  L  *  *  L  R  K  Y  S  I  S  I  S  S  L  T  F  Q  I  S  S  W  P  L  I  I  S  A  Y  T  L  V  E  G  L  L  L  T  S  W  K  R  I  Y  S  *  H  R  F  T  L  R  H  L  E  *  P  C  T  A  L  E  I  L  H  P  A  L  S  G  M  N  W  R  I  *  R  P  K  E  E  *  R  K  V  T  K  F  G  R  L  H  L  E  V  A  L  N  V  I  V  L  F  G  R  H  Y  E  M  *  S  L  L  P  M  V  P  G  R  I  V  S  T  G  I  L  *  K  *  C  H  N  T  V  E  I  M  I  R  Q  V  K  G  Y  L  *  L  L  P  C  T  S  W  H  L  F  S  *  S  R  V  M  L  Y  F  C  S  R  V  K  Y  H  F  V  L  F  L  V  *  S  L  M  L  I  C  V  V  P  F  Q  S  I  T  C  M  T  S  Y  M  *  Q  F  L  F  Y  C  S  Y  F  P  D  K  H  L  F  M  T  E  L  M  S  S  G  F  K  L  L  T  R  T  V  I  S  H  C  *  *  N  D  S  I  N  G  M  F  I  I  F  Y  L  L  </first_frame>
            <second_frame>  K  S  Q  L  Q  W  *  Y  S  R  E  K  K  K  K  S  E  R  G  F  R  A  F  Q  T  L  *  F  P  Q  F  I  L  S  L  F  H  R  R  H  E  R  S  H  R  H  A  S  Q  H  R  E  R  R  W  W  *  A  S  R  S  S  D  P  A  E  *  E  V  A  G  F  P  S  E  C  K  L  K  V  R  *  T  R  L  P  L  L  D  L  S  F  V  D  S  M  F  D  S  C  N  G  C  D  F  N  *  S  F  T  N  E  S  *  *  Y  S  S  I  M  A  T  F  A  V  *  S  S  L  C  Y  Y  L  F  R  R  F  G  F  W  I  H  S  L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T  *  E  N  R  C  A  C  C  E  L  *  F  V  Q  S  D  S  I  A  F  S  Y  D  C  E  Q  V  *  V  E  R  *  Y  K  E  F  *  S  G  R  Y  G  L  *  C  W  C  N  C  R  *  S  C  *  G  H  V  A  S  A  Q  K  Y  L  C  C  C  C  *  Y  *  E  Y  Y  A  E  L  V  F  W  E  *  E  V  H  V  D  T  K  L  F  V  *  S  R  R  F  C  C  S  A  V  *  Q  V  R  G  *  K  K  G  E  I  *  A  C  S  C  C  *  D  T  S  W  G  *  *  *  G  I  S  L  C  L  P  R  T  G  *  C  W  E  N  W  G  F  F  V  K  R  S  H  G  N  R  W  W  S  A  *  D  E  Y  H  Y  I  G  S  S  C  S  T  H  Q  *  A  A  S  V  L  W  F  S  D  N  *  E  N  I  Q  *  A  Y  Q  A  L  H  S  R  F  Q  V  G  L  *  S  F  L  H  T  R  W  W  K  G  C  Y  *  R  A  G  K  E  F  T  A  D  T  G  S  R  *  G  I  S  N  D  P  A  P  L  W  K  Y  F  I  Q  L  Y  L  V  *  I  G  V  Y  R  G  Q  R  K  N  E  E  R  *  Q  S  L  A  D  C  I  W  K  W  L  *  M  *  *  C  C  L  A  G  T  T  K  C  K  A  F  S  R  W  S  L  G  G  L  Y  R  Q  V  S  C  K  S  S  V  I  T  L  W  R  S  *  L  G  K  L  R  A  I  C  S  C  F  R  V  R  H  G  T  S  S  L  E  A  E  *  C  S  T  S  V  H  E  S  S  I  I  L  S  F  S  *  F  R  A  L  C  *  F  V  L  Y  H  F  N  L  L  L  V  *  L  H  I  C  S  N  S  Y  F  I  V  V  I  F  L  I  N  I  Y  S  *  L  S  L  *  V  V  D  S  S  C  *  H  A  L  L  F  L  T  V  S  E  M  I  P  L  M  A  C  S  S  F  S  I  C  L </second_frame>
            <third_frame>   K  V  S  F  S  G  S  I  V  E  R  R  R  R  R  V  R  E  V  L  E  P  F  K  L  F  D  F  P  N  L  F  S  L  F  F  T  A  A  M  N  G  A  T  G  T  Q  V  N  T  A  N  G  G  G  G  E  P  V  G  V  Q  I  Q  Q  S  R  R  L  P  D  F  L  Q  S  V  N  L  K  Y  V  K  L  G  Y  H  Y  L  I  S  H  L  L  T  L  C  L  I  P  V  M  A  V  I  L  I  E  A  S  Q  M  N  P  D  D  I  R  Q  L  W  L  H  L  Q  Y  N  L  V  S  V  I  I  C  S  A  V  L  V  F  G  S  T  V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  K  K  I  G  V  L  V  V  N  C  S  L  F  N  P  T  P  S  L  S  A  M  I  V  N  K  Y  K  L  R  G  N  I  R  S  F  N  L  G  G  M  G  C  S  A  G  V  I  A  V  D  L  A  K  D  M  L  Q  V  H  R  N  T  Y  A  V  V  V  S  T  E  N  I  T  Q  N  W  Y  F  G  N  K  K  S  M  L  I  P  N  C  L  F  R  V  G  G  S  A  V  L  L  S  N  K  S  V  D  R  R  R  A  K  Y  K  L  V  H  V  V  R  T  H  R  G  A  D  D  K  A  F  R  C  V  Y  Q  E  Q  D  D  A  G  K  T  G  V  S  L  S  K  D  L  M  A  I  A  G  G  A  L  K  T  N  I  T  T  L  G  P  L  V  L  P  I  S  E  Q  L  L  F  F  G  S  L  I  I  K  K  I  F  N  K  H  I  K  P  Y  I  P  D  F  K  L  A  F  D  H  F  C  I  H  A  G  G  R  A  V  I  D  E  L  E  K  N  L  Q  L  T  Q  V  H  V  E  A  S  R  M  T  L  H  R  F  G  N  T  S  S  S  S  I  W  Y  E  L  A  Y  I  E  A  K  G  R  M  K  K  G  N  K  V  W  Q  I  A  F  G  S  G  F  K  C  N  S  A  V  W  Q  A  L  R  N  V  K  P  S  P  D  G  P  W  E  D  C  I  D  R  Y  P  V  K  V  V  S  *  H  C  G  D  H  D  *  A  S  *  G  L  S  V  A  A  S  V  Y  V  M  A  P  L  L  L  K  P  S  D  A  L  L  L  F  T  S  Q  V  S  F  C  P  F  L  S  L  E  P  Y  A  N  L  C  C  T  I  S  I  Y  Y  L  Y  D  F  I  Y  V  A  I  P  I  L  L  *  L  F  S  *  *  T  S  I  H  D  *  A  Y  E  *  W  I  Q  V  A  N  T  H  C  Y  F  S  L  L  V  K  *  F  H  *  W  H  V  H  H  F  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63341" stop="61671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1668</number_coding_nucleotides>
                  <number_encoded_amino_acids>556</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSFSGSIVERRRRRVREVLEPFKLFDFPNLFSLFFTAAMNGATGTQVNTANGGGGEPVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLIPVMAVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKPKKIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFGSLIIKKIFNKHIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNKVWQIAFGSGFKCNSAVWQALRNVKPSPDGPWEDCIDRYPVKVVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61640" stop="61446"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSVAASVYVMAPLLLKPSDALLLFTSQVSFCPFLSLEPYANLCCTISIYYLYDFIYVAIPILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63133" e_stop="63131"/>
            <exon e_start="62914" e_stop="61312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63133" e_stop="63131" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.833">
            <gDNA_intron_boundary i_start="63130" i_stop="62915" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="62914" e_stop="61312" e_length="1603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63133" stop="63131"/>
              <exon start="62914" stop="62343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62876" stop="61985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62845" stop="62262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62603" stop="62114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62459" stop="62034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62299" stop="61571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61921" stop="61429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="61444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61630" stop="61312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGG : TTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</gDNA_template>
            <first_frame> R  :  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L  R  K  *  V  C  L  L  *  I  V  V  C  S  I  R  L  H  R  F  Q  L  *  L  *  T  S  I  S  *  E  V  I  *  G  V  L  I  W  E  V  W  V  V  V  L  V  *  L  P  L  I  L  L  R  T  C  C  K  C  T  E  I  P  M  L  L  L  L  V  L  R  I  L  R  R  T  G  I  L  G  I  R  S  P  C  *  Y  Q  I  V  C  L  E  S  E  V  L  L  F  C  C  L  T  S  P  W  I  E  E  G  R  N  I  S  L  F  M  L  L  G  H  I  V  G  L  M  I  R  H  F  V  V  F  T  K  N  R  M  M  L  G  K  L  G  F  L  C  Q  K  I  S  W  Q  S  L  V  E  R  L  R  R  I  S  L  H  W  V  L  L  F  Y  P  S  V  S  S  F  C  S  L  V  L  *  *  L  R  K  Y  S  I  S  I  S  S  L  T  F  Q  I  S  S  W  P  L  I  I  S  A  Y  T  L  V  E  G  L  L  L  T  S  W  K  R  I  Y  S  *  H  R  F  T  L  R  H  L  E  *  P  C  T  A  L  E  I  L  H  P  A  L  S  G  M  N  W  R  I  *  R  P  K  E  E  *  R  K  V  T  K  F  G  R  L  H  L  E  V  A  L  N  V  I  V  L  F  G  R  H  Y  E  M  *  S  L  L  P  M  V  P  G  R  I  V  S  T  G  I  L  *  K  *  C  H  N  T  V  E  I  M  I  R  Q  V  K  G  Y  L  *  L  L  P  C  T  S  W  H  L  F  S  *  S  R  V  M  L  Y  F  C  S  R  V  K  Y  H  F  V  L  F  L  V  *  S  L  M  L  I  C  V  V  P  F  Q  S  I  T  C  M  T  S  Y  M  *  Q  F  L  F  Y  C  S  Y  F  P  D  K  H  L  F  M  T  E  L  M  S  S  G  F  K  L  L  T  R  T  V  I  S  H  C  *  *  N  D  S  I  N  G  M  F  I  I  F  Y  L  L  </first_frame>
            <second_frame>  G :   L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T  *  E  N  R  C  A  C  C  E  L  *  F  V  Q  S  D  S  I  A  F  S  Y  D  C  E  Q  V  *  V  E  R  *  Y  K  E  F  *  S  G  R  Y  G  L  *  C  W  C  N  C  R  *  S  C  *  G  H  V  A  S  A  Q  K  Y  L  C  C  C  C  *  Y  *  E  Y  Y  A  E  L  V  F  W  E  *  E  V  H  V  D  T  K  L  F  V  *  S  R  R  F  C  C  S  A  V  *  Q  V  R  G  *  K  K  G  E  I  *  A  C  S  C  C  *  D  T  S  W  G  *  *  *  G  I  S  L  C  L  P  R  T  G  *  C  W  E  N  W  G  F  F  V  K  R  S  H  G  N  R  W  W  S  A  *  D  E  Y  H  Y  I  G  S  S  C  S  T  H  Q  *  A  A  S  V  L  W  F  S  D  N  *  E  N  I  Q  *  A  Y  Q  A  L  H  S  R  F  Q  V  G  L  *  S  F  L  H  T  R  W  W  K  G  C  Y  *  R  A  G  K  E  F  T  A  D  T  G  S  R  *  G  I  S  N  D  P  A  P  L  W  K  Y  F  I  Q  L  Y  L  V  *  I  G  V  Y  R  G  Q  R  K  N  E  E  R  *  Q  S  L  A  D  C  I  W  K  W  L  *  M  *  *  C  C  L  A  G  T  T  K  C  K  A  F  S  R  W  S  L  G  G  L  Y  R  Q  V  S  C  K  S  S  V  I  T  L  W  R  S  *  L  G  K  L  R  A  I  C  S  C  F  R  V  R  H  G  T  S  S  L  E  A  E  *  C  S  T  S  V  H  E  S  S  I  I  L  S  F  S  *  F  R  A  L  C  *  F  V  L  Y  H  F  N  L  L  L  V  *  L  H  I  C  S  N  S  Y  F  I  V  V  I  F  L  I  N  I  Y  S  *  L  S  L  *  V  V  D  S  S  C  *  H  A  L  L  F  L  T  V  S  E  M  I  P  L  M  A  C  S  S  F  S  I  C  L </second_frame>
            <third_frame>    : V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  K  K  I  G  V  L  V  V  N  C  S  L  F  N  P  T  P  S  L  S  A  M  I  V  N  K  Y  K  L  R  G  N  I  R  S  F  N  L  G  G  M  G  C  S  A  G  V  I  A  V  D  L  A  K  D  M  L  Q  V  H  R  N  T  Y  A  V  V  V  S  T  E  N  I  T  Q  N  W  Y  F  G  N  K  K  S  M  L  I  P  N  C  L  F  R  V  G  G  S  A  V  L  L  S  N  K  S  V  D  R  R  R  A  K  Y  K  L  V  H  V  V  R  T  H  R  G  A  D  D  K  A  F  R  C  V  Y  Q  E  Q  D  D  A  G  K  T  G  V  S  L  S  K  D  L  M  A  I  A  G  G  A  L  K  T  N  I  T  T  L  G  P  L  V  L  P  I  S  E  Q  L  L  F  F  G  S  L  I  I  K  K  I  F  N  K  H  I  K  P  Y  I  P  D  F  K  L  A  F  D  H  F  C  I  H  A  G  G  R  A  V  I  D  E  L  E  K  N  L  Q  L  T  Q  V  H  V  E  A  S  R  M  T  L  H  R  F  G  N  T  S  S  S  S  I  W  Y  E  L  A  Y  I  E  A  K  G  R  M  K  K  G  N  K  V  W  Q  I  A  F  G  S  G  F  K  C  N  S  A  V  W  Q  A  L  R  N  V  K  P  S  P  D  G  P  W  E  D  C  I  D  R  Y  P  V  K  V  V  S  *  H  C  G  D  H  D  *  A  S  *  G  L  S  V  A  A  S  V  Y  V  M  A  P  L  L  L  K  P  S  D  A  L  L  L  F  T  S  Q  V  S  F  C  P  F  L  S  L  E  P  Y  A  N  L  C  C  T  I  S  I  Y  Y  L  Y  D  F  I  Y  V  A  I  P  I  L  L  *  L  F  S  *  *  T  S  I  H  D  *  A  Y  E  *  W  I  Q  V  A  N  T  H  C  Y  F  S  L  L  V  K  *  F  H  *  W  H  V  H  H  F  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63131" stop="61671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKPKKIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFGSLIIKKIFNKHIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNKVWQIAFGSGFKCNSAVWQALRNVKPSPDGPWEDCIDRYPVKVVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61640" stop="61446"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSVAASVYVMAPLLLKPSDALLLFTSQVSFCPFLSLEPYANLCCTISIYYLYDFIYVAIPILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="69221" PGL_stop="67333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69221" e_stop="68567"/>
            <exon e_start="67337" e_stop="67333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.934"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="69221" e_stop="68567" e_length="655"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68566" i_stop="67338" i_length="1229"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="67337" e_stop="67333" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69221" stop="68572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69220" stop="68567"/>
              <exon start="67337" stop="67333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGATAACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTTTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTA : TTTTG</gDNA_template>
            <first_frame> P  T  P  T  S  I  P  I  H  H  W  L  Y  S  S  P  I  I  L  M  I  S  K  F  L  V  S  M  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  F  V  S  F  I  N  F  S  K  R  F  F  S  P  S  F  S  I  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  I  C  R  V  K  D  N  C  T  G  K  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  G  K  W  V  F  R  F  F  S  L  F  F  S  F  F  F  Y  F  K  I  I  F  I  F  L  L  N  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  S  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  R  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  G  R  I  *  L  W  P   : I  L </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  I  G  Y  I  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  I  L  M  I  S  K  F  L  A  F  L  F  H  L  *  I  F  R  R  D  S  F  P  H  L  S  L  S  K  K  R  D  E  V  K  N  Y  N  *  *  K  S  *  *  K  K  K  F  V  E  L  K  I  T  V  Q  G  R  G  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  G  S  G  C  L  G  F  S  L  S  F  F  L  F  F  F  T  L  K  *  F  L  F  F  Y  L  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  D  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  A  A  Y  D  F  G  L  :  F   </second_frame>
            <third_frame>   H  P  N  L  H  T  H  T  P  L  V  I  F  F  P  H  H  F  N  D  F  K  I  L  S  I  N  G  Y  L  L  P  P  P  F  *  *  F  Q  N  S  *  H  F  C  F  I  Y  K  F  F  E  E  I  L  F  P  I  F  L  Y  L  K  N  E  M  K  *  K  I  I  I  N  K  K  A  D  E  K  K  N  L  S  S  *  R  *  L  Y  R  E  G  G  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  R  E  V  G  V  *  V  F  L  S  L  F  F  F  F  F  L  L  *  N  N  F  Y  F  F  T  *  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  F  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  W  P  H  M  T  L  A  Y :   F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69005" stop="68790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKKLMKKKICRVKDNCTGKGGSPLMELEEMYVLFQLKAGKWVFRFFSLFFSFFFYFKIIFIFLLNNIMFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="69494" PGL_stop="74080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69494" e_stop="69631"/>
            <exon e_start="69741" e_stop="69812"/>
            <exon e_start="70557" e_stop="70631"/>
            <exon e_start="71831" e_stop="71911"/>
            <exon e_start="72578" e_stop="72647"/>
            <exon e_start="72723" e_stop="72814"/>
            <exon e_start="73517" e_stop="73558"/>
            <exon e_start="73650" e_stop="73730"/>
            <exon e_start="73909" e_stop="74080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.573" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="0.989"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="69494" e_stop="69631" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.573">
            <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69812" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69813" i_stop="70556" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70557" e_stop="70631" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="70632" i_stop="71830" i_length="1199"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71831" e_stop="71911" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.625">
            <gDNA_intron_boundary i_start="71912" i_stop="72577" i_length="666"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72578" e_stop="72647" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72648" i_stop="72722" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="72723" e_stop="72814" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72815" i_stop="73516" i_length="702"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73517" e_stop="73558" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73559" i_stop="73649" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73650" e_stop="73730" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.929" acc_prob="0.947">
            <gDNA_intron_boundary i_start="73731" i_stop="73908" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="73909" e_stop="74080" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69494" stop="69631"/>
              <exon start="69741" stop="69812"/>
              <exon start="70557" stop="70631"/>
              <exon start="71831" stop="71911"/>
              <exon start="72578" stop="72647"/>
              <exon start="72723" stop="72814"/>
              <exon start="73517" stop="73558"/>
              <exon start="73650" stop="73730"/>
              <exon start="73909" stop="74080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69556" stop="69631"/>
              <exon start="69741" stop="69812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG : CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG : TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG : GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA : GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG : ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAG : ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG : ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG : GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</gDNA_template>
            <first_frame> S  *  K  T  G  R  G  N  *  P  I  S  N  S  N  I  S  L  C  K  I  L  S  N  R  T  A  A  L  I  R  S  L  S  G  E  K  M  E  A  N  A  P  Q  F  K  :  L  I  L  G  S  S  S  T  A  R  K  K  I  L  G  D  M  G  Y  E  F  T  T  M  :  S  A  D  I  D  E  K  A  I  R  K  E  K  P  E  D  L  V  M  A  L  A  E  A  K  :  A  E  A  I  I  P  R  V  S  I  G  E  S  E  G  D  A  E  P  T  L  L  I  T  C  D  Q  :  V  V  V  Y  E  G  V  I  R  E  K  P  S  S  E  A  E  A  R  Q  F  M  K   : D  Y  A  N  G  H  A  A  T  V  S  S  V  L  V  T  N  L  T  T  G  S  R  R  G  E  W  D  K  V  E  :  I  Y  F  H  D  I  P  D  Q  V  I  D  K  L  :  I  E  E  G  I  V  L  Y  A  A  G  G  L  I  I  E  H  P  L  V  L  P  Y  I  K  E  V  :  V  G  S  T  D  S  V  M  G  L  P  K  A  L  T  E  R  L  I  K  E  V  L  *  Y  D  Y  D  P  A  P  T  *  M  S  S  R  S  I  I  L  I  Y  A  I  G  A  E  I  I  I  D  C  S  H  W  M  </first_frame>
            <second_frame>  R  K  K  R  V  G  A  I  D  P  F  Q  I  V  T  F  P  C  V  K  F  S  P  I  G  L  R  R  *  S  V  H  S  P  A  K  K  W  K  P  M  L  L  S  L  S :   *  F  W  V  H  P  L  L  L  G  K  R  F  *  A  T  W  D  T  S  S  Q  P  C :   L  Q  I  L  M  R  K  L  S  G  K  K  S  L  K  I  *  L  W  L  L  L  R  Q  R :   Q  K  P  S  Y  Q  G  F  Q  L  E  N  P  K  G  M  P  S  Q  H  F  *  L  R  V  I  K :   W  W  S  M  K  V  *  S  G  K  N  H  P  V  K  Q  K  H  V  S  S  *  K  :  I  T  P  M  D  M  Q  Q  P  *  V  L  F  L  S  R  T  *  Q  Q  E  A  E  E  E  S  G  T  K  S  R :   F  I  S  T  T  Y  Q  I  K  S  *  I  N  * :   L  R  K  G  *  F  F  M  Q  L  V  A  *  *  L  N  I  L  S  F  C  L  I  L  R  K  W :   L  A  R  L  I  A  *  W  V  S  Q  K  L  S  P  K  D  L  *  R  R  F  F  S  M  T  M  I  L  L  L  P  E  *  V  R  D  L  *  F  *  Y  T  L  L  E  L  K  L  S  L  I  V  R  T  G  C </second_frame>
            <third_frame>   V  K  N  G  S  G  Q  L  T  H  F  K  *  *  H  F  L  V  *  N  S  L  Q  S  D  C  G  V  N  P  F  T  L  R  R  K  N  G  S  Q  C  S  S  V  *   : A  N  F  G  F  I  L  Y  C  S  E  K  D  F  R  R  H  G  I  R  V  H  N  H   : V  C  R  Y  *  *  E  S  Y  P  E  R  K  A  *  R  F  S  Y  G  S  C  *  G  K   : G  R  S  H  H  T  K  G  F  N  W  R  I  R  R  G  C  R  A  N  T  S  N  Y  V  *  S   : S  G  G  L  *  R  C  D  Q  G  K  T  I  Q  *  S  R  S  T  S  V  H  E  R :   L  R  Q  W  T  C  S  N  R  E  F  C  S  C  H  E  P  D  N  R  K  Q  K  R  R  V  G  Q  S  R   : D  L  F  P  R  H  T  R  S  S  H  R  *  T   : D  *  G  R  D  S  S  L  C  S  W  W  L  D  N  *  T  S  S  R  F  A  L  Y  *  G  S   : G  W  L  D  *  *  R  D  G  S  P  K  S  S  H  R  K  T  Y  K  G  G  S  L  V  *  L  *  S  C  S  Y  L  N  E  F  A  I  Y  N  F  D  I  R  Y  W  S  *  N  Y  H  *  L  F  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69521" stop="69631"/>
                    <exon start="69741" stop="69812"/>
                    <exon start="70557" stop="70631"/>
                    <exon start="71831" stop="71911"/>
                    <exon start="72578" stop="72647"/>
                    <exon start="72723" stop="72814"/>
                    <exon start="73517" stop="73558"/>
                    <exon start="73650" stop="73730"/>
                    <exon start="73909" stop="73980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISNSNISLCKILSNRTAALIRSLSGEKMEANAPQFKLILGSSSTARKKILGDMGYEFTTMSADIDEKAIRKEKPEDLVMALAEAKAEAIIPRVSIGESEGDAEPTLLITCDQVVVYEGVIREKPSSEAEARQFMKDYANGHAATVSSVLVTNLTTGSRRGEWDKVEIYFHDIPDQVIDKLIEEGIVLYAAGGLIIEHPLVLPYIKEVVGSTDSVMGLPKALTERLIKEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="81321" PGL_stop="79647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81321" e_stop="81255"/>
            <exon e_start="80713" e_stop="80656"/>
            <exon e_start="80457" e_stop="80398"/>
            <exon e_start="80105" e_stop="80043"/>
            <exon e_start="79972" e_stop="79647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81321" e_stop="81255" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="81254" i_stop="80714" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80713" e_stop="80656" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80655" i_stop="80458" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80457" e_stop="80398" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.746" acc_prob="0.772">
            <gDNA_intron_boundary i_start="80397" i_stop="80106" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80105" e_stop="80043" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80042" i_stop="79973" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79972" e_stop="79647" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81321" stop="81255"/>
              <exon start="80713" stop="80656"/>
              <exon start="80457" stop="80398"/>
              <exon start="80105" stop="80043"/>
              <exon start="79972" stop="79647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA : GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG : TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG : TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG : GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</gDNA_template>
            <first_frame> F  S  Y  *  E  F  S  V  I  T  L  K  M  K  Y  T  I  L  S  G  L  S   : S  L  K  K  L  M  M  P  A  R  R  C  F  R  S  F  T  S  C  S :   P  K  V  R  R  S  G  S  V  I  S  R  H  N  E  N  V  T  K  S :   S  T  R  S  G  D  N  *  *  R  L  V  I  R  I  L  V  L  H  I  R :   W  K  D  L  L  A  F  I  P  V  K  S  Q  T  *  A  C  I  P  R  I  S  T  I  G  L  V  R  I  L  C  L  M  N  L  V  S  S  L  F  E  G  I  L  *  S  R  G  Q  R  Q  C  I  L  K  K  S  F  A  H  S  N  L  H  S  E  L  P  T  W  K  I  F  M  F  C  G  I  I  T  *  I  V  S  Y  L  F  V  L  S  H  I  C  T  Y  L  I  V  N  L  N  Y  I  K  Q  L  E  W  </first_frame>
            <second_frame>  S  V  I  E  N  S  A  *  S  H  *  R  *  N  T  P  S  *  V  V  S  Q  :  V  *  R  N  *  *  C  Q  Q  G  D  V  F  G  A  S  Q  A  A   : V  Q  R  *  G  G  Q  A  Q  S  S  A  G  T  T  R  M  S  P  K   : V  P  Q  G  L  G  T  T  N  E  D  W  L  S  E  F  S  F  C  T  S   : G  G  K  I  C  L  P  L  Y  Q  S  S  H  K  L  E  P  V  F  P  G  *  V  L  *  A  *  *  G  F  Y  A  S  *  I  W  Y  P  L  Y  L  R  G  S  C  N  P  G  A  K  G  S  A  F  *  R  R  A  L  L  I  L  I  Y  I  P  S  Y  Q  H  G  K  S  L  C  F  V  V  *  *  L  K  L  Y  H  I  C  L  C  C  L  I  Y  A  L  I  *  L  *  I  *  I  I  *  N  N  *  N  G </second_frame>
            <third_frame>   Q  L  L  R  I  Q  R  D  H  I  E  D  E  I  H  H  L  K  W  S  L  K :   S  E  E  T  D  D  A  S  K  E  M  F  S  E  L  H  K  L  Q  :  S  K  G  E  E  V  R  L  S  H  Q  Q  A  Q  R  E  C  H  Q  K  :  F  H  K  V  W  G  Q  L  M  K  T  G  Y  Q  N  S  R  F  A  H  Q  :  V  E  R  F  A  C  L  Y  T  S  Q  V  T  N  L  S  L  Y  S  P  D  K  Y  Y  R  P  S  E  D  F  M  P  H  E  F  G  I  L  S  I  *  G  D  L  V  I  Q  G  P  K  A  V  H  F  E  E  E  L  C  S  F  *  F  T  F  R  V  T  N  M  E  N  L  Y  V  L  W  Y  N  N  L  N  C  I  I  F  V  C  A  V  S  Y  M  H  L  S  D  C  E  F  E  L  Y  K  T  T  R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81319" stop="81255"/>
                    <exon start="80713" stop="80656"/>
                    <exon start="80457" stop="80398"/>
                    <exon start="80105" stop="80043"/>
                    <exon start="79972" stop="79850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLRIQRDHIEDEIHHLKWSLKSEETDDASKEMFSELHKLQSKGEEVRLSHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFGILSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 184 chains have been computed
$ 
$ memory statistics:
$ 335544 bytes spliced alignments in total
$ 139 spliced alignments have been stored
$ 2413 bytes was the average size of a spliced alignment
$ 26840 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1677 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 194 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:29:27
-->
