<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 17:36:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339257" ref_strand="+" ref_description="SGN-U339257        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains 2 WD-40 repeats (PF0400);similar to guanine nucleotide-binding protein beta subunit GPBA (SP:P36408) (Dictyostelium discoideum (Slime mold)); similar to katanin p80 (WD40-containing) subunit B 1 (GI:12655011) (Homo sapiens) | chr1:13468123-13471888 REVERSE | Aliases: F5J5.6, F5J5_6(evalue: 1e-34, score=143) genbank/nr: gi|62320749|dbj|BAD95417.1| hypothetical protein [Arabidopsis thaliana] (evalue: 6e-33, score=144)">
      <seq>ctgagtcaaagttgtttgttatgttccattctactacttgtgtgacagatctacttttgcagtgtcaaacataacagtggaggctgatggttgaaatttccgaacttccaattctcttttgtgtgtccctctagagaataatcttgattttatttcaattcatctgtcgtggtcctccattttcagttggtcgttaactagttctgttgcctcttctgcatggttcatccctttctattcaaggcccattgttcattgcaaacctttctcggctgttgctctagaagagtttgagttgatgaacatttttttgctagtcattatgtgaaagtggttgtgttttaattcttgttgtaaatgatgtttgtttgaattgttttctttcaaataaataaccagatattgtatgtgcattgttattgtatctatctttcagccttacaagcaggttgcagttattatgtgagcagctggtgcaagcattttccatatgttgaggaatctcttgtggtcgacatcaaaacatgatgtgtatctcatgcaaaactactctgtgatgcactggtcctcacttcttggaaagggggaagaagtgcttaatgttgctaggccattgacgcccactatgaaataccctggatcagcgtctcaaacacttccccgagtgcagatcagcactatggctgttaaagatggtttgctggctgctgggggtttccaaggggagcttatctgtaagtatttaaaccaacctggagttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="3016" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2716" g_stop="2224" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2223" i_stop="652" i_length="1572">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="651" g_stop="517" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="628" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="437" g_stop="327" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="739" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="326" i_stop="247" i_length="80">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="246" g_stop="221" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="765" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U339257" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2716" e_stop="2224"/>
          <exon e_start="651" e_stop="517"/>
          <exon e_start="437" e_stop="327"/>
          <exon e_start="246" e_stop="221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATGGTATGATAGGGAATAATCTGTGAATTTAAGAGGCCTTTATGGTATTTCTTCTGTTAAGTTTGAGCTAACTTGTTAATGGCAGCAAGTATGTATTAAAATGTTTGTGTGTTGCTTCATCATTTGAATAGTTGGATGGTCATCTCTTAATCATTTGAATAGTTGGATGGTCATCTCTTCTTCATTTGAATAGTTGGATGGTCATCTCTTCTGTTGAAGATGGTTGTAGTCATTATCTTGTTTATGGTTATCTCTTCTGTTGGAGATGGTTGCACTTTTTTTCTCTCTGTTTGTTAGAGATGGATTCTGCACTAGGCTCTCTTTAAGTACTTCCACTTGTGGGTTGTGAATTCTGATTGCTGTGTCACAGTTACTTCACGATTTTGATAATTATACGACTTCTTTGGTACATCTTCTCTGGTAGCTGTCATCTGATACGGTCTCCATCAGAAAGAGAAGATTTTCTGGCAATTGAGCTCTTGCATAATACGAGTAAGATAGTTGGCTTGGATTACGTTTGTCATTCATTTGAGAGTTCGTGACTTCATTTTGAAATTTCCGGCGACTTTATTGTGTGTTCTTCTGTCCTTGATCAATCACACTTCCAAACTTAGGAATTTAATTGCTGACTTTCTCTCTTTGCTATGTGGTGTTGTGCCCTGAATCAAGCGCGTTGGGAACTTGGGTGCTCAATTACTTATCTACTGCTCCCAAGAGTTATCCTCTCTTCCCTATATTCCTTGGTCCATTCCACTCTTTGGAATAGAATATCGGAGAACCTAGCACTTGTATTTGTGATCCATCTATTACGCTATTGAATCCCGTTGACGTCTTTTGAAATATGTACTGTTCATTGTTTGGGTTTTGCTGCCTTGTATTGATTATGTACAATTTCCAAGGTGGTGAGGCATCCCTTTAGAGTCTCTGTGGCGTTCTCATTTTTTTCTGCGTCATTTTTCCTCCTGTCATCATTGCGGTTTACATTTCTGACTTCTCTTTCACAGGTTTCTTTTCTGCTTCGATCTGTATAATAGTGTAGGAAAGTGAACTGTTTTTTAGCTGCCCAATTTGCTTTCCAGGAAACCTGCTCTATTGCAGATGATGATGTGTAACTATTAGTGGTAGATTGTTCAGTTGTGGACTTGTAGAAAGCTAGCAGCTGTTCCTTCGCTAGCTTATGCATCATTGACCACTAATATTTAGGACTAGCGACATATTGACCTACGACTTGACTTTGTATTAGGCATTGCCCGACTTTGCAGAAGGAGAGGGGGGCGGTTGATTTTTGTGGTCCATTCTGCAATACACTGTGTAGGTTATTTATTCCCAATTTACTGTTCGCTCAGCTTGTAATATGGTTGAGACGGGGAACGAGAACTATCTGAAACCTGAAGTTTATGAGATTGCATGTCTATCATTTTTGGAAAAAAAAATTATGAGCTTTTTCTGCAAATTACAGCATTCTTAAGTTCTGTTTTTGCTTTATTTGATCTCGTGTGACGTTGTTTGCTTCATAGGAAACTGGTATGCTGTCTAGTGATGAGTGTAACAACCCGTTCTATATTTTTGTTTCAGTTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATGGTTAGCAGTACTTTTTGTCTCCCTTAAATATACTTAAATGACTTTTGACTATCAAGAATTAACTCTCTGGTTTGTGCAGAAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGGTTTCCAAGGGGAGCTTATCTGTAAGGTAGGATGACAATGTAAATTCTGAGCATATATGTACTTTTTCTTAAGTAATGCATACTGATAGGATTTTAACTCGTGCAGTATTTAAACCAACCTGGAGTTGCATT</genome_strand>
        <mrna_strand>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATG...............................................................................AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAAAGATGGTTTGCTGGCTGCTGGGGGTTTCCAAGGGGAGCTTATCTGTAAG................................................................................TATTTAAACCAACCTGGAGTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328053" ref_strand="+" ref_description="SGN-U328053        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains Pfam profile PF00400: WD domain, G-beta repeat | chr1:29359926-29363883 FORWARD | Aliases: None(evalue: 1e-64, score=243) genbank/nr: gi|62320749|dbj|BAD95417.1| hypothetical protein [Arabidopsis thaliana] (evalue: 3e-64, score=247)">
      <seq>tatacactgtttctcactaattttcaattagttttcacagtttaattatctgaagaactccggagatttttttccggcgtgaggtggttactttttccatttgtttctcgtgaaaatctctcaacttccgatactttcaaggataatggctctctctcaaaatcaggagttggagtatatggtggatgagtactatgacactactgattttgatgacagcacttttgggggtgaatcgccgcgaagtactgacccggatatctctgcagactcggaatttgaggacgattttgaagtgagaaagtcaaagctggatacatcagctatagaagctagaaatggcaaggatatacagggaataccttgggaaaggcttaattttaccagagacaagtaccgcgagacgaggttgaagcagtataagaactacgagagcctgtctcgctctcgtgaagatcttgaaaaggagtgcaaggaagtaggaaaaggacacagcttctacgacttccagttcaatacaaggctcgtcaaatcaactatcgtgcactttcagttgaggaatctcttgtggtcgacatcaaaacatgatgtgtatctcatgcaaaactactctgtgatgcactggtcctcacttcttggaaagggggaagaagtgcttaatgttgctaggccattcccgcccaccatgaaataccctggatcagcgtctcaaacacttccccgagtgcagatcagcactatggctgttttaaatggtttgctggctgctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="5677" stop="52"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5377" g_stop="5237" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5236" i_stop="4454" i_length="783">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4453" g_stop="4297" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="298" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4296" i_stop="4205" i_length="92">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4204" g_stop="4037" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="466" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4036" i_stop="3942" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3941" g_stop="3855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="553" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3854" i_stop="652" i_length="3203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="651" g_stop="517" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="688" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="437" g_stop="352" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="774" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U328053" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5377" e_stop="5237"/>
          <exon e_start="4453" e_stop="4297"/>
          <exon e_start="4204" e_stop="4037"/>
          <exon e_start="3941" e_stop="3855"/>
          <exon e_start="651" e_stop="517"/>
          <exon e_start="437" e_stop="352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACACTGTTTCTCACTAATTTTCAATTAGTTTTCACAGTTTAATTATCTGAAGAACTCCGGAGATTTTTTTCCGGCGTGAGGTGGTTACTTTTTCCATTTGTTTCTCGTGAAAATCTCTCAACTTCCGATACTTTCAAGGTTCGGTTCTCAAACTTCCTTTTCCGTCAAATGTTTCCTTCTAGAATGTACTGTAAAACGACGTTTTACACTTTCTCTTTTTCAATTTATGTTGTTTAAGTTTCGGTTTTGTATGAGAAATTGATGAAATTTCAGTTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAAATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTTGTTTAATTTCCTGGCAAGTGAAGACTTGTCAAATTAGTTCATGAATTCTTATTCATAATATATGTTCGGGTGCTTATTAAGATTTGTTTTGTTGATTTAGGATAATGGCTCTCTCTCAAAATCAGGAGTTGGAGTATATGGTGGATGAGTACTATGACACTACTGATTTTGATGACAGCACTTTTGGGGGTGAATCGCCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTGGTACTGGGCAGATTTAATTTTTTTGACATGTTACTGGTGTCATCTTCATCCTTAGTTTAACAATGTTGACTTACTGCTCTTCGGTTCTACAGAGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAGGTTTTTCTTCACACTCTTTTCCATTCCCATGTATTGGAATGTTCTCGTATATTTGGCTAGGCTCAACTCTAAAAGTTTATTTCCTCACCATTAAGGAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAGGTAATATAGATTTTTTAGCCTTTTCTTGTTTGGATTTATGTTAACCTTTGATCAAGAAAATCGTGGACTGGTCTGCCTCCCTGTAGTTCTTTGTGATTGATTTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTTTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAACAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGACAGCTTTCTGGAATAATAATTCACCAGATCCAATATGTTTGAGAGATGCCTCTTATGGCCTCCAAGCTGGTGAATTTGCATCTGATGTAAATTTAGTGTTACTATTTCTTGATGCAGCTAATTTCTTTTTCTTCTTCTGTTCAGAAATCCAAAAGATATTGCCGAATTTGACTTTTGCCAGTTTCTTCTAGTAATGCTATTCTGGCTACATGACGAAGCAAACAAGATTTACATAGAAACCGTTCTTATATTCTGCAATTACTTTTTAACTCATTTTTTTAGTTAGCAGTTTAGTCTGCCTCGATTGATGTATTGATCAGAGAGCAGTGTTCACAATATCCTTTTTTATGCAGATTACAAACATTTAAAGAAGTGTCTTATGGAACTTTGTAATTGTAGAAGATCCTTGTTTTGGAACTTCACTCTTGAATATTTCATCATGAATCAGCTGAATGTATTTTGAGGACTGGGTTTTGATATGGAAGCTTAGGAGTGAGGACAGAACCTGGCTTATGCTGGATTTGTAGTTTGTCGTTTTTTGCTGACATAGAATATAGTTCTGACTTCTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATGGTATGATAGGGAATAATCTGTGAATTTAAGAGGCCTTTATGGTATTTCTTCTGTTAAGTTTGAGCTAACTTGTTAATGGCAGCAAGTATGTATTAAAATGTTTGTGTGTTGCTTCATCATTTGAATAGTTGGATGGTCATCTCTTAATCATTTGAATAGTTGGATGGTCATCTCTTCTTCATTTGAATAGTTGGATGGTCATCTCTTCTGTTGAAGATGGTTGTAGTCATTATCTTGTTTATGGTTATCTCTTCTGTTGGAGATGGTTGCACTTTTTTTCTCTCTGTTTGTTAGAGATGGATTCTGCACTAGGCTCTCTTTAAGTACTTCCACTTGTGGGTTGTGAATTCTGATTGCTGTGTCACAGTTACTTCACGATTTTGATAATTATACGACTTCTTTGGTACATCTTCTCTGGTAGCTGTCATCTGATACGGTCTCCATCAGAAAGAGAAGATTTTCTGGCAATTGAGCTCTTGCATAATACGAGTAAGATAGTTGGCTTGGATTACGTTTGTCATTCATTTGAGAGTTCGTGACTTCATTTTGAAATTTCCGGCGACTTTATTGTGTGTTCTTCTGTCCTTGATCAATCACACTTCCAAACTTAGGAATTTAATTGCTGACTTTCTCTCTTTGCTATGTGGTGTTGTGCCCTGAATCAAGCGCGTTGGGAACTTGGGTGCTCAATTACTTATCTACTGCTCCCAAGAGTTATCCTCTCTTCCCTATATTCCTTGGTCCATTCCACTCTTTGGAATAGAATATCGGAGAACCTAGCACTTGTATTTGTGATCCATCTATTACGCTATTGAATCCCGTTGACGTCTTTTGAAATATGTACTGTTCATTGTTTGGGTTTTGCTGCCTTGTATTGATTATGTACAATTTCCAAGGTGGTGAGGCATCCCTTTAGAGTCTCTGTGGCGTTCTCATTTTTTTCTGCGTCATTTTTCCTCCTGTCATCATTGCGGTTTACATTTCTGACTTCTCTTTCACAGGTTTCTTTTCTGCTTCGATCTGTATAATAGTGTAGGAAAGTGAACTGTTTTTTAGCTGCCCAATTTGCTTTCCAGGAAACCTGCTCTATTGCAGATGATGATGTGTAACTATTAGTGGTAGATTGTTCAGTTGTGGACTTGTAGAAAGCTAGCAGCTGTTCCTTCGCTAGCTTATGCATCATTGACCACTAATATTTAGGACTAGCGACATATTGACCTACGACTTGACTTTGTATTAGGCATTGCCCGACTTTGCAGAAGGAGAGGGGGGCGGTTGATTTTTGTGGTCCATTCTGCAATACACTGTGTAGGTTATTTATTCCCAATTTACTGTTCGCTCAGCTTGTAATATGGTTGAGACGGGGAACGAGAACTATCTGAAACCTGAAGTTTATGAGATTGCATGTCTATCATTTTTGGAAAAAAAAATTATGAGCTTTTTCTGCAAATTACAGCATTCTTAAGTTCTGTTTTTGCTTTATTTGATCTCGTGTGACGTTGTTTGCTTCATAGGAAACTGGTATGCTGTCTAGTGATGAGTGTAACAACCCGTTCTATATTTTTGTTTCAGTTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATGGTTAGCAGTACTTTTTGTCTCCCTTAAATATACTTAAATGACTTTTGACTATCAAGAATTAACTCTCTGGTTTGTGCAGAAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGG</genome_strand>
        <mrna_strand>TATACACTGTTTCTCACTAATTTTCAATTAGTTTTCACAGTTTAATTATCTGAAGAACTCCGGAGATTTTTTTCCGGCGTGAGGTGGTTACTTTTTCCATTTGTTTCTCGTGAAAATCTCTCAACTTCCGATACTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGGCTCTCTCTCAAAATCAGGAGTTGGAGTATATGGTGGATGAGTACTATGACACTACTGATTTTGATGACAGCACTTTTGGGGGTGAATCGCCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTG............................................................................................AGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAG...............................................................................................GAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTCCCGCCCACCATG...............................................................................AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTTTAAATGGTTTGCTGGCTGCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343459" ref_strand="+" ref_description="SGN-U343459        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttagtctctgttgtctcattttgcataattcaattaaacctggcaaacgactcccatggctgcctttctcattcttgcctttcatgttatttttcctcattcatttttaactgggttttttagttgtctgttattttgcatcattatgagttagttaaacaaaaggatattttttttgaaactggtaatgtataataggatttggttatttacagtctaatcattgtgtgagcttttggtcgatgatccccgtcgcctttttctcctctccatgcaataactatacttctgcaggtgctctgctcctaatgttctggatattttgatttaaactgttaggctgttggtcaccctttcattaattccagaggtatggagtctgtatcctcatcgaagaattcagtgagtttgatgcttgatatggaataacttagagatcaactatatgtgtgtctaactcatttgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="4053" stop="2983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3753" g_stop="3283" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U343459" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3753" e_stop="3283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTTTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAACAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGA</genome_strand>
        <mrna_strand>TTAGTCTCTGTTGTCTCATTTTGCATAATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTATTTTTCCTCATTCATTTTTAACTGGGTTTTTTAGTTGTCTGTTATTTTGCATCATTATGAGTTAG-TTAAACAAAAGGATATTTTTTTTGAAACTGGTAATGTATAATAGGATTTGGTTATTTACAGTCTAATCATTGTGTGAGCTTTTGGTCGATGATCCCCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGG-TCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGTATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAATAACTTAGAGATCAACTATATGTGTGTCTAACTCATTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341136" ref_strand="+" ref_description="SGN-U341136        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttattgccctcttttctatgctaatacctgtgaaagatgcatgctgagttttttctgcgatgaccttttctatactttagttttgatgttgttaagctttttattccacaatattttggctattttctatagtttttgatgttattaagctttttattccactgaattctggctactttgtatagtttgatgttgttaagctttttattccactgtattctgtctattttctgtagtttttatgttgttaagctgtttattccactgaattctggtgattttctatagttttgatgttattaatctttttattccactaaatactggctacttcctattattttgatgtttttctcggctaaattctcgctatcttctgtagttttgatgttgttaagattttgtctccactaaaatctgacagttttctattgtttgcgaaattcaccttgtaattcaaaaatttaaatgttttccttagtagatttgtttttaataaatatttcatataaatggtttagtatttcaattttttgctaatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="5401" stop="4254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5101" g_stop="4554" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U341136" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5101" e_stop="4554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAA-ATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTT</genome_strand>
        <mrna_strand>TTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAAGATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338469" ref_strand="-" ref_description="SGN-U338469        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ccattgattctttgattggtaaacttttgactccgacctccaaagatgtgaagcacgtggatcggaaactcaaatcatgtcttgatccgggttcacatgacaagagtaaaaaaaggaagcatagatccaaagatagctcacatgaggctactgacttatcttgaactgctctaactcaagtttgtagcttcaaagcatatcttctttgcccagtggaaatagcgtttctcattgctgctcatcagttccctaatatagaacaaaaattgaagccagactgtagaagtagaggcgggtcgaggatttaagatcacaaatttctcaagacttttttcttaaattttgtactatgaaatcaattagtagtttaaacttcgagtgttagttaacctggaatttactgtttggagatgtaaaagctcactttttagaaatgagaatgttgttcttaatgagaacttcaaagtttaatatgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="12666" stop="11500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12494" g_stop="12481" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12480" i_stop="12366" i_length="115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12365" g_stop="12277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="103" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12276" i_stop="12174" i_length="103">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12173" g_stop="11800" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="477" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="495"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U338469" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338469" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12494" e_stop="12481"/>
          <exon e_start="12365" e_stop="12277"/>
          <exon e_start="12173" e_stop="11800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGATTCTTTGGCAAGTACTTACTTAACCTTGTTATACTGCATGCCTGGAATGGTGTATCTTTCTCTTCTTGCTGACTTCTTCCCCGAAATCTCTCTGACTGCCTGAACTCCTGGAATTTGAACAGATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAAGTGCGGTTCTATCAACTCTGATTTGATTATCATTTTTCCATCTTTTGGTTTTTGCGATATTTTATTGGCCCAGCCAAAAAATGATACTGGTTTGTAAATGCAGGAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTCAAAGTTTAATATGCA</genome_strand>
        <mrna_strand>CCATTGATTCTTTG...................................................................................................................ATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAA.......................................................................................................GAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTCAAAGTTTAATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329250" ref_strand="+" ref_description="SGN-U329250        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl hydrolase family 3 protein, similar to xylosidase GI:2102655 from (Aspergillus niger) | chr1:29354573-29357818 REVERSE | Aliases: F28K19.27, F28K19_27(evalue: 3e-72, score=268) genbank/nr: gi|6573772|gb|AAF17692.1| F28K19.27 [Arabidopsis thaliana](evalue: 2e-70, score=268)">
      <seq>ctttatatattgttacattcaattttattcataggcaagaaagtacatttacatttacattatatataagtaaacttgtttttagagaagaaacaccaaaaaaaatggaacagcaaataactaataaattcaccgtcatgtttatcttcttcattttagtgcttctttttctccgtgctgaatcaactaaacctccattttcatgtgactcttcaaacccaaatacaagttcatatcccttctgcaacgctgcgttaccaatcccacaaagggtaaacgacctcgtttcgcgtctcactgtagatgagaaaatcttacagctcgttaatggagcgccggaaatacctcgactcggtatctccgcttatgaatggtggtcggaagggttacacggcatttctaggcatggaaagggtacgctttttaatggaaccattaaggcggcaactcaattccctcagatcattcttactgcttcttcttttgatgaaaatctctggtatcgtatagctcaggcaattggaagagaggcaagagcagtgtacaatgcaggtcagctaaagggaataacattatgggcaccaaatataaacatactcagggacccaaggtggggaagaggccaagagacaccaggggaagaccctatgatggtgggaaaatatggagtggcttatgtaagaggacttcaaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="28125" stop="30035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28425" g_stop="28954" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28955" i_stop="29552" i_length="598">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29553" g_stop="29735" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="698" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U329250" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28425" e_stop="28954"/>
          <exon e_start="29553" e_stop="29735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATATATTGTTACATTCAATTTTATTCATAGACAAAAAAAAAAGTACATTACATTTATTTACATTATATATATGTAAACTTGTTTTTTACAGAAGAAACACCAAAAAAAAAAAAAAATGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCGTCATTTTAGTGCTTCTTTTTCGCCGTACTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAGGTATGTGATTATTATCATGTTTGTTGAGAGATAAATTTTATTATTTTTCAATTTTAGGAGTATCGCCTGAATTCATCGTAAATTGGCTAGTTTTGTATCGGTTGTCGATCTATATCAACCCTTCTCTTTTACTCCGACGCACTCTGATCGTGTTTACGCTATTCAAAATGTACTCCATTGGTCTATGTCCGTCTTTCATGCCTCTTCCTTTTAATTAAATATTAATATTATTAAATTGGAAATTTGACTTAAAATGTTCTTATTTAGTCGTCGATCTTAATTTAATATTTCTGTTTTTTCTTTCACCACATTAATATCGCTCTATTGGAGTAAGAGTAAGGTGGAACAGAGTAATTAATTCTATGTTGATTTTTAAAATTGGCAAGTATTTTGGAATGTTATTTTTGGTAATGGACCAGACAAGGGAGTAATTATAGTTATAGATAACTTAATGATTATCTTCCAATTTGTATGACATGCATTAAAATCATATTTAGTTGAAAGTTGATCATAAAATTATTGGACAGAAGAGGAATGTGTTTGTTGGATAGAAAGAAGAAAATCAGTACTAGTTTGTTGAACTTGTTGCTTTCTGTAGGCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAATATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTATGTAAGAGGACTTCAAGGGGAT</genome_strand>
        <mrna_strand>CTTTATATATTGTTACATTCAATTTTATTCATAGGC----AAGAAAGTACATT---TACATTTACATTATATATAAGTAAACTTG-TTTTTAGAGAAGAAACACCAAAA-AA-AA-----TGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCTTCATTTTAGTGCTTCTTTTTCTCCGTGCTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAACATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTATGTAAGAGGACTTCAAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332954" ref_strand="+" ref_description="SGN-U332954        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl hydrolase family 3 protein, similar to xylosidase GI:2102655 from (Aspergillus niger) | chr1:29354573-29357818 REVERSE | Aliases: F28K19.27, F28K19_27(evalue: 1e-23, score=106) genbank/nr: xylan(evalue: 3e-25, score=117)">
      <seq>tgggtacgggcccccctcgagttttttttttttttttttacttaagacatgatatttattgataaaatgaaaacaaattattcatcaattcacttgtcatattttaaactattatttgtcataaacctagagtagaactagtttctttctgcaaatattagcagatttaactagtaaccttccataattaaattttactagctattatcttaatactaactaaaaccttagatctgggagatcatagagatacaggaacaggatactcctgatctcccacaagaaggaaatgtttcccttcatcgataactaatgtaccatctcgattagccctggtgaagtgctcacaaggcttcacatcaaatgtaacttgtgtatttgcccctgcttccaaattcacactcttgaatcctatcaatgtcttttttggaacctcatccactgtgctagagtgcttcagaaacaacaacacggggtgcttaccagccatttctccctggtttttcaccgcaactttaactgttatcatcgcgctgttacatacttctggtccaacgtctgatacagcaatgttcagaacagaacctttttcagttgccttgttgatctttgggttcttgaaaagcagttggtttttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="46844" stop="31977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38500" g_stop="38467" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.618"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38466" i_stop="32887" i_length="5580">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32886" g_stop="32277" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="642" r_length="609" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U332954" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38500" e_stop="38467"/>
          <exon e_start="32886" e_stop="32277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGACATGGCCACGCCCACTTTTTTGTCTTGGTCCAAATACGACTTTTCGTCAATAATTATATATTCAGTATAATTATAATAAAGTCTACATATATTTTATCTTTTTTCTATCAAAAGTAGAATTATTTCTAATAGATCAAAACGACCTCCCTGGTCCCTAATCCACTCCACTTATTGTGCAAGAATAAATAGAAAATGAACAATTTGACTTTGAGACTTTTACCTTATATTCGACTAGCGATAAAATATGCTAATTTTAAAAATGAAAAAACAAAAATTAAAGGGGCCAGGTATAATTAATACAAATCCAGTCTTTTGAAATTAGTCCATCAAAATATTGGCAAGACGAATTATATTTTCAATTTCTATTTTTAAATTAGTCCATCAAAATATTGGCAAGACGAATTATATTTTCAATTTCTATTTTTATTTTGACATCCCACCGACAATGTCATAATAAACATTAAAAAGCATTATTTTTTCGATACTAGCATTTTAAGAATTATTCCCTGCAAATTTTAAGCATTAAAATATATATTTATTTTTTAAAAAGATCTGACAGATAAGGTTGTTGCCCTAATAATAATTCAGAAAATTAAATCCCGTGACTGTTGTTTCCATGATAGGAAAAGTACATATAACATATCAAGACAATGAAGTCTTCTAAACTTCGAAAGTAGTGAAGAATCGTTAAATACTGATTACTCGTTGGTCATATAAATAAAAAGGCTATAGAAATGCAAAATATTAGTCCATGCTTCGTTTTTAACATTATTTGACTTGATGATATTTAAAGAAAAAACTTAGATTTATAATCTAAAACAATCACGATACATATATATATGATTTTATTTTCATTAAAGTAAAAAAAATTAAATTAAATCACTTCATTTTAAAGTACCGTGGCGTTTTTTTTGGGATAAACTGAAAAAGAAAAAGATATCAAAATGAGATAAAAGAAGTACTCTCTTTCAAAGAAAAAAACTTGATTCGTCCAACAATATTTGTTTACGTACTTGTCCACTTTATAAAATGAAATAATACATAAATATATCCTTTAACTTTACATTATTTTATATTTATGTCTTTTTAACTTTGAATATGCACAAGTAGACACTTAAAATTGCATAAAATTAAACAAATGAACACACACGTCCTATGTGACATTCTCATGATTATTTGTGTTTTACGTGGTGTGTAATGTGTCACATTGGACTAATTTGTCTACTTATTCAACTTTACACAAGTATAAATGTTTATTGGTGTACACCCAAAATTTGAGAGTATAAATGTGAAATGAGGTCAAGTTAAAAGACATATATATATATATATATATGCATTCCGAAATTTATGAATAATTTTAAACTTTCTAATTTACCCTTATTATCAATTATATTCATTTTTCAATTACATTTTTTAAGACATTGTATTTATTATATTTAAAAGATGGTATAGTAAAATCAACCTTCTATTTATATTTTCTTAAAAAATGTGCCAAGTTACAAGTGAATAACTATTGTTGGACGGAGGAAAACATAAAACACTTTCAGCCTTAAGATGCATAAATCTGAGTTAATGAAGACATAAAGTAGATACTAAACAATTTAAGTGAATATGTAAAAATACTTTATACGCATAGAAATAACATAGGTCACAAATTGATTCAAACATCATGATTATATCGAAAAGAGAGAAAAGAAAGAATTAACTTACAATGGCGTTGAAGCTAAATCGATCCAAGTTTTTCCATTGATCCAAATCATAAGCAGTGAAATGTTTGCAGCAAGCAGAAGCTTGAAGGTGACCTTTTTTAAGCTGTCCACCATTAAAACTGTCACCTTGTACACCTCTAACATACCTAATTGCATATTTGCCAGTCATTATTGGGTCCTCCCCTGGTGTCTCTTGACCTCTTCCCCATCTTGGATCCCTAAATATATTTATATTTGGTGCCCAAAATGTCATACCGATTGCTTGACCTGCATTGTATACTCCCCTGGCCTCTACTCCAATCACCTAAATTCATTCTTACAAAATTATTAGCAATAAAAATTCACAGTTTTTTTTACACTACACTCATTGTAACAAGTTACATGAATCATTAATACAGTAAAATAAAAAAAAAAAGATGGACTATCAATAATTGAATTTTGAGACACAATAAATATCCATACATCCACCGACAATCCAAATGAAAGAGTACTATTTTTAATCTACATACCTAATGTGTACTTTATATTTCAAAGTTTACTAACATACTACATTTATCGAGAAAATGAAATCTCTTTTGACCATTCATAAATTGCATAAGAAAAAAAAATATTATTTTAGATATGGTAAAAATAAAAAAATCATAAAATTTAGAATAAGTGAGTAAATTACATCTCAACTTTACTTTACAATTTTTTAAAAAATGCATATATGTTAAGTGACAGGGCATATTCCTTCTAAATCACAAAGTTAATTATATATATATATATATTTTTATTTCTTTTTTTAAGTTGATAAAATTTGAATAGTGCCTTCAAAATCAATCTTCCCTTTAAACATGGGAAATGGAGAAAAAGTCTATAAGGTAAAAAAATCAAATCCTCGCTAGCAAAATTAAAGTCTAAAGTTAATAAATCGCCGCGGAAAGATTCAAAATGTATAAAAGTAAAAAACAAGTAAATATTATGTCCGAAATTTTCAGAGACATACGTATACTGTACTAAAGTCATATCATTCGTGAATCTATTTTATAAGTAATTTTTTATCCTTTTTCAGTTTAAGTATGGATAAAAAATTACTTATAAAATAAATTTAGAAATAATAGAACCTTAGTATAGTATAAGTGTGTCCATAAAAATTTGAAACATAAATTGAACGGCTAATTGTCCATTATCCTAAAAAAAAAAAAATTAAACAAAACAGATTTTTAAATTGGTTACTAACCTGACCAATGCGGTACCATAGATTTTCATCAAAAGTAGCAGCAGTGAGAATAACTTGGGGAAAACTGGTGGCTCCGGCAATACTCCCATTGAAGAAAATACCTTTTCCGGCAGAACCAACGCCGTGCAATGATTCCGACCACCACTCATACGCCGGAATACCGAGTCTGGGTATTGCAGGAGCTGAGTTAACTAGTTGAGATATTTTCTCATCGAGTGTGAGTCGAGAAACAAGGTCTAGTACACGTACACTAATTGGAAGTCCTGTTTGGCAAAATTTTAACGATTTGGTTTGCGGATTCGACGAATCGCAAGAGAAAGGTGGCTGAGTTGATTGAACAATCGAAACTAATGATAGAGATATGAGAATAGTAGTAATGAGAGTTGAGATGTGAAGTTTCATTGTGAAGTGAAAAATGGGGGAAAATGGAAGTTGGAGTTAGGAGTGGTACAAAGAGAGGTGAACTTATTTATAAGAAGAAAAAAAAAAGAAATTTAATCTTTTTTGATAGTAAAAGAATATTTTACTAAAGTTACTAGTTTTGGATATACAATATTGAATTTATCCATTTAGTTTTAAAAGTATATGTCTATTTAAAGCCTAGAGCATTTTGAAATAAGTTTTATTATCTAATGAGGATGATTTTTGGTGCAATTTAATTCGAGTATAGAAAATAATATTTTTACTTTATATTAATTTTGAGCTTAACTTTTATATCCTGCAAATCAAGTAAAATTTCCATGTATACAAGTCATTAAATCTCATAAAGCATACATATGTAAGTTATTTCTTCGTTGTATTTTAATTTTGATCCATTTTATATTAACTCAGAGTTAGCCGATACTCATGAGTAACTTTTCCATAGAATATTTGATTGATATATTTAAATTAAACGTTTAAATTAATTTTTCATGTGTATATAAAAAATTAGCATATATCTTTATTTTACGTGTCTTAAAAATTAAAGAGTAGAAGCACTTTGAAAGTAAGATAGTTAAAATGTCTGTTTGTGCATTATAAAAATTAAAAGTTAAAGTTAAAATTTAAAGCCAAATTTAAGATCTAATATATATATATTATGCCTCAAAAGTAATTGCATAAACTATTACTATTCAGAAGCAAACGAAGTAAGTTTATTTCTATAAGAACTTTTCAGAAACTTGGTTAAGCTAGGTTGGTGTTTAATATTAATAATAATTTTTTAAAATAATTAGCTTAATATAAATTATTATGTGTTTTTGAAATTTTGATCAATTGAGTTACATGGAGGGATCATTTGGTCCATCTCATTATATTGATTTTTCTCTTTTAATTTTACTTTTGTTTAAACAAATACAATTTACAAGAAATTATTTAATATCTTATTAAGGAAAAATTAATAAAAAATTACTTTTTATTTAAGAAAAATTGTACCAAGATAAAACATCATTTATTATAAAACGAGAGTAGGAAGAAACTTTCGTATTAATACTTTTTGCTTTGTTAGTTTGTACTTTGTCTTTAGGTTTGGTTAGTCATATAGCAAATTCTCATTAACTATAAAATAAATAATCTGGTAACCCAACGAGTCTTACTAACAAGTTTCGTACTTATTCTCATATTAAATATTATAAATCTTTTTTTCTTGTTATTTAATCTACGCCATTAATTTTTTATTATATATATATTTATATATTCTCCTATTTTTATCCTTTTCAATTTCCCCGTTTTTTCCACACAAAAAAAAGAATAGAATAAAAAATTTCCCCGTTTTCTTTTACCTACTCTAGTTGTATCGAAAATTAACCTTCAACTAAAAAACTAACAACTTGTTCTTATTATTCTTCCTTTTTCGTCGTATCAAATTATATTTTACTAAATATAATTAAATAATCATAAAAATAAAGAGTAATTAATAATTTTTTTTGTCATATGATCTTTTAACGAAAGATAAAACATTCAATCAACATGTGTAATAAAGTAATATAGATTATCATTCGAGACAATGGTAAATACTCATGTTTTAAGAAATTTATATCATATAAGAGTGTAATAATAAGGATATATTTGAACCATTTATAGAAGTATATATACGCTATTTTTGTAATATAATATAGATATATCGCTCTAAATTGCAAAGTAAAAGGACATATGGTGCTCTGTTTCCCAATTAACTTTAATCACAATATCCGGAGATTCAGTTAATTCGTTGTTAAAGTATGAAGAATTTCTAACTTTAAACACTATTTTTGGCCATATTTATTAAGATCATACTAATTAATGGAGCTCATTTTATGCGTTCTTGCGTAGAGAAGTTTTGGTTGTCACGTTTTAGAGAAGATGATCCTTAATATATGGTGGTTGGATTGTTTGGTCATAAATATATACCCTTTAACAGGAATAATCCTTGATATATGAAAAAAGTAATCATCTTGTTCGAGAACGTTTTACCCCTTAAATGGTATTACGAAATATAAATATCTAATATACAATCAGCAACCTAAAACTTAGAAAAATATATAGAGTAAGTTTAAAGAATAATTTTATGCAGTTGGTGGAGGTAAGCTACAGGAGTGAGTAGGACAATGACAATCCATGAGCATTCTAATTGTGGGACTAATCATATTCATCAGTAGAAAGGATAGGGACTAATAATATTTTAAACTATTCAAAATTAAAGTAGAATTTATGCAAAAGGATGATACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTGATACAGCAATGTTCAGAACAGAACCTTTTTCAGTTGACTGGTTGATCTTTGGGTTCTTGAAAAGCAGTTGGTTTTTGCTCA</genome_strand>
        <mrna_strand>TGG-GTACGGGCCCCCCTCGAGTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACT-AAAACCTTAGATCTGGGAGATCATAGAGATACAGGAACAGGATACTCCTGATCTCCCACAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTGGTGAAGTGCTCACAAGGCTTCACATCAAATGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTGATACAGCAATGTTCAGAACAGAACCTTTTTCAGTTGCCTTGTTGATCTTTGGGTTCTTGAAAAGCAGTTGGTTTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331522" ref_strand="+" ref_description="SGN-U331522        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl hydrolase family 3 protein, similar to xylosidase GI:2102655 from (Aspergillus niger) | chr1:29354573-29357818 REVERSE | Aliases: F28K19.27, F28K19_27(evalue: 1e-68, score=255) genbank/nr: gi|6573772|gb|AAF17692.1| F28K19.27 [Arabidopsis thaliana](evalue: 5e-67, score=255)">
      <seq>atcaactcagccacctttctcttgcgattcgtcgaatccgcaaaccaaatcgttaaaattttgccaaacaggacttccaattagtgtacgtgtactagaccttgtttctcgactcacactcgatgagaaaatatctcaactagttaactcagctcctgcaatacccagactcggtattccggcgtatgagtggtggtcggaatcattgcacggcgttggttctgccggaaaaggtattttcttcaatgggagtattgccggagccaccagttttccccaagttattctcactgctgctacttttgatgaaaatctatggtaccgcattggtcaggtgattggagtagaggccaggggagtatacaatgcaggtcaagcaatcggtatgacattttgggcaccaaatataaatatatttagggatccaagatggggaagaggtcaagagacaccacgggaggacccaataatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="34929" stop="36922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35229" g_stop="35562" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36481" g_stop="36622" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="476" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U331522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35229" e_stop="35562"/>
          <exon e_start="36481" e_stop="36622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAGGTTAGTAACCAATTTAAAAATCTGTTTTGTTTAATTTTTTTTTTTTTAGGATAATGGACAATTAGCCGTTCAATTTATGTTTCAAATTTTTATGGACACACTTATACTATACTAAGGTTCTATTATTTCTAAATTTATTTTATAAGTAATTTTTTATCCATACTTAAACTGAAAAAGGATAAAAAATTACTTATAAAATAGATTCACGAATGATATGACTTTAGTACAGTATACGTATGTCTCTGAAAATTTCGGACATAATATTTACTTGTTTTTTACTTTTATACATTTTGAATCTTTCCGCGGCGATTTATTAACTTTAGACTTTAATTTTGCTAGCGAGGATTTGATTTTTTTACCTTATAGACTTTTTCTCCATTTCCCATGTTTAAAGGGAAGATTGATTTTGAAGGCACTATTCAAATTTTATCAACTTAAAAAAAGAAATAAAAATATATATATATATATAATTAACTTTGTGATTTAGAAGGAATATGCCCTGTCACTTAACATATATGCATTTTTTAAAAAATTGTAAAGTAAAGTTGAGATGTAATTTACTCACTTATTCTAAATTTTATGATTTTTTTATTTTTACCATATCTAAAATAATATTTTTTTTTCTTATGCAATTTATGAATGGTCAAAAGAGATTTCATTTTCTCGATAAATGTAGTATGTTAGTAAACTTTGAAATATAAAGTACACATTAGGTATGTAGATTAAAAATAGTACTCTTTCATTTGGATTGTCGGTGGATGTATGGATATTTATTGTGTCTCAAAATTCAATTATTGATAGTCCATCTTTTTTTTTTTATTTTACTGTATTAATGATTCATGTAACTTGTTACAATGAGTGTAGTGTAAAAAAAACTGTGAATTTTTATTGCTAATAATTTTGTAAGAATGAATTTAGGTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAGACACCAGGGGAGGACCCAATAATGACTG</genome_strand>
        <mrna_strand>ATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAGACACCACGGGAGGACCCAATAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324315" ref_strand="+" ref_description="SGN-U324315        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl hydrolase family 3 protein, similar to xylosidase GI:2102655 from (Aspergillus niger) | chr1:29354573-29357818 REVERSE | Aliases: F28K19.27, F28K19_27(evalue: 1e-129, score=459) genbank/nr: gi|6573772|gb|AAF17692.1| F28K19.27 [Arabidopsis thaliana](evalue: 1e-127, score=459)">
      <seq>tttgtgctccacaacaccaacaactagcccttgaagctgcaagaaatggcattgtcttgctcaagaataccggcaagttgctgcctctttccaaggcgaaaaccaactcccttgctgtcattggtcataatgccaacaatgcttatattctccgtgggaactatgacggtcctccctgcaaatacatcgaaattctcaaggcattggttggttatgcaaagtcagttcagtaccaacagggttgcaatgcggctaactgcacgtctgctaacattgatcaagctgtcaacattgcaagaaatgcagattatgttgttttaatcatggggttggatcaaactcaagagagggaacaatttgatcgcgatgacttagtgctcccggggcagcaagaaaatcttatcaatagtgttgctaaagctgcaaagaagcctgttatattggtgattctctcaggaggtccagttgatatttctttcgcgaaatataaccctaaaataggaagcattttgtgggctggctatcctggtgaagctggaggaattgctttagctgaaatcatatttggtgaacataatcctgggggtaaattacctgttacttggtatcctcaagcctttgtcaaaataccaatgacagatatgaggatgagacctgatcctaaaacaggttaccctggaagaacatatcgattctacaaaggtcccaaagtttacgagtttggatatggtcttagctacactacttattcctatggattccactctgccactccaaacacaatccagttaaatcaattattatctgtaaagacagttgaaaattcagactcaatccgttacacgtttgtggatgaaataggaagtgacaactgtgagaaggcgaaattctcagctcatgttagtgttgaaaactcaggggaaatggatggtaagcatccagtactactttttgtgaaacaggacaaagcgcgaaatggaagtcctatcaaacagttagttggattccaaagtgtaagcttgaaggcaggggaaaattcacaacttgtgtttgagatcagtccttgtgaacatcttagcagtgctaatgaagatggattaatgatgatagaagaaggatcgcgttaccttgtcgttggagatgcagagcatcctatcaacatcatgatatgaaaccaaaaaaaaaaatggttacaaaaagttatttttactattttgaatttcacaaatcctctctaaatacctataagagtggcaatgttgcagcagcaacagctaaagtatagatatcaagatgaatttgagctattatctctttctcttgctagatatctattttattttctcttcttttttttcaagaactcgaaaagttttataagaaattcaagtactactagcattaagatgttaaggatgctcactagtgtatctcattatgaattatagaacaaagacgttaacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="39714" stop="41868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40014" g_stop="40595" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40682" g_stop="41575" g_length="894"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="1475" r_length="893" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U324315" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1476</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40014" e_stop="40595"/>
          <exon e_start="40682" e_stop="41575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTCCACAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTGGTAAGACTTGATCACTTCGTTACGATTTTTCCCCCTTCCTCAAACATGCTTGATTTTGACAACGACAACGTTTTTCTTAATGTCAGGGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGGGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTCTTTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAAGTACTACTAGCATTAAGATGTTAAGGATGCTCACTAGTGTATCTCATTATGAATTATAGAACAAAGACGTTAACATAGACGGGGAG</genome_strand>
        <mrna_strand>TTTGTGCTCCACAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAGGCGAAAACCAACTCCCTTGCTGTCATTGGTCATAATGCCAACAATGCTTATATTCTCCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG......................................................................................GGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGAGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTC-TTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAAGTACTACTAGCATTAAGATGTTAAGGATGCTCACTAGTGTATCTCATTATGAATTATAGAACAAAGACGTTAACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345058" ref_strand="+" ref_description="SGN-U345058        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tRNA-splicing endonuclease positive effector-related, contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease (Saccharomyces cerevisiae) gi:172574:gb:AAB63976 | chr4:14714197-14720048 FORWARD | Aliases: F6G3.130, F6G3_130(evalue: 5e-104, score=344) genbank/nr: AAA(evalue: 7e-105, score=353)">
      <seq>aagagtcgtgatgaagtttatgggtggatgcaccagttgagagctcgtgaagcgcagttgtcacagcagatagctggccttcaaagagaactgacagttgctgcagctgctggtcgtgcacagggatctgttggagttgaccctgatgttcttatggctagggaccaaaatcgagatactctattgcagaaccttgcggcagtggttgagaatagagataaaatactggtggagatgtcccgtcttctgattttggagagtaggttccgtggtggtaacaatttcaacatggaggaagctcgtgctagtctggaggctagttttgccaatgaagctgaaattgtcttcactactgtctcaagtagtgggagaaaattattctctcgtcttacccatggttttgacatggtagtcattgatgaagcagcccaggccagtgaagtaggagtccttcctcctctttctcttggtgcagcacgatgtgttcttgttggggatccgcagcagcttcctgctacagttatcagcaaagcagctggaactttgatgtacagtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="59544" stop="60701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59844" g_stop="60401" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U345058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59844" e_stop="60401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCTCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGA</genome_strand>
        <mrna_strand>AAGAGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCGCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346566" ref_strand="+" ref_description="SGN-U346566        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tRNA-splicing endonuclease positive effector-related, contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease (Saccharomyces cerevisiae) gi:172574:gb:AAB63976 | chr4:14714197-14720048 FORWARD | Aliases: F6G3.130, F6G3_130(evalue: 4e-29, score=125) genbank/nr: hypothetical(evalue: 3e-27, score=125)">
      <seq>aattctctggtgcaatcagaagattgggctgcattgattgctgatgccaaaaccagaaaatgttacatggacatggatactttgcctaaggacttcttgctacccaaggctgcttctcatgctcctccacagaccaatatgtctaataatcgaggtttaagatctgggttacgacatagaatatatgatccacacatggagcccaggtcaggaacaccttcagaagatgatgaaaaaccaaatgcattatatgtaaggaatggaagttataggcctcctaagccctcactggacaattcgttgaatgattttgatcaacctgctgatagatctagagatgcctggcaaaatggtatacagaggaggcaaaatacagctggaattgggagaagagacctgtaattggtgtccatgaatgtgccacatatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="60796" stop="61826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61096" g_stop="61526" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U346566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61096" e_stop="61526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTCTAATAATCGAGGTTTAAGATCTGGGTTACGACATAGAATATATGATCCACACATGGAGCCCAGGTCAGGAACACCTTCAGAAGATGATGAAAAACCAAATGCATTATATGTAAGGAATGGAAGTTATAGGCCTCCTAAGCCCTCACTGGACAATTCGTTGAATGATTTTGATCAACCTGCTGATAGATCTAGAGATGCCTGGCAAAATGGTATACAGAGGAGGCAAAATACAGCTGGAATTGGGAGAAGAGACCTGTAATTGGTGTCCATGAATGTGCCACATATCAC</genome_strand>
        <mrna_strand>AATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTCTAATAATCGAGGTTTAAGATCTGGGTTACGACATAGAATATATGATCCACACATGGAGCCCAGGTCAGGAACACCTTCAGAAGATGATGAAAAACCAAATGCATTATATGTAAGGAATGGAAGTTATAGGCCTCCTAAGCCCTCACTGGACAATTCGTTGAATGATTTTGATCAACCTGCTGATAGATCTAGAGATGCCTGGCAAAATGGTATACAGAGGAGGCAAAATACAGCTGGAATTGGGAGAAGAGACCTGTAATTGGTGTCCATGAATGTGCCACATATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336550" ref_strand="+" ref_description="SGN-U336550        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam profile: PF00650 CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI::2739044) {Glycine max}; similar to Phosphatidylinositol Transfer Protein Sec14p (GI:2780955) (Saccharomyces cerevisiae) | chr1:7828317-7830189 REVERSE | Aliases: None(evalue: 6e-15, score=78.2) genbank/nr: gi|30687745|ref|NP_173637.3| expressed protein [Arabidopsis thaliana] gi|25518105|pir||D86354 F16L1.9 protein - Arabidopsis thaliana gi|9454532|gb|AAF87855.1| Contains similarity to a KIAA0420 protein from Homo sapiens gi|2887415 and contains a CRAL/TRIO PF|00650 domain. [Arabidopsis thaliana](evalue: 4e-13, score=78.2)">
      <seq>aaagacttttgagggaccagaagtaaattaccttacctgtttgctggttcagattttgaccattttgtcctttgtcgtcaccaagaggactatcttcagatttttctcacatggtgaatgctattcatacatataatggattattttccattatatatatgtttagtcactgtaaacaatgtacaataacctttttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagaatttgcaatcccatacagttgctaatacggggagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66334" stop="69442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66634" g_stop="66937" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68487" i_length="1550">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68488" g_stop="68522" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="339" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68523" i_stop="68849" i_length="327">
            <donor d_prob="0.720" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="464" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69047" g_stop="69142" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U336550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66634" e_stop="66937"/>
          <exon e_start="68488" e_stop="68522"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTTTGAGGGACCAGAAGTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGC</genome_strand>
        <mrna_strand>AAAGACTTTTGAGGGACCAGAAGTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAATCCCATACAGTTGCTAATACGGGGAG.......................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318530" ref_strand="+" ref_description="SGN-U318530        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam profile: PF00650 CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI::2739044) {Glycine max}; similar to Phosphatidylinositol Transfer Protein Sec14p (GI:2780955) (Saccharomyces cerevisiae) | chr1:7828317-7830189 REVERSE | Aliases: None(evalue: 1e-93, score=340) genbank/nr: gi|30687745|ref|NP_173637.3| expressed protein [Arabidopsis thaliana] gi|25518105|pir||D86354 F16L1.9 protein - Arabidopsis thaliana gi|9454532|gb|AAF87855.1| Contains similarity to a KIAA0420 protein from Homo sapiens gi|2887415 and contains a CRAL/TRIO PF|00650 domain. [Arabidopsis thaliana](evalue: 1e-91, score=340)">
      <seq>gtaaattaccttacctgtttgctggttcagattttgaccattttgtcctttgtcgtcaccaagaggactatcttcagatttttctcacatggtgaatgctattcatacatataatggattattttccattatatatatgtttagtcactgtaaacaatgtacaataacctttttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgtggccagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggccagttcttgtcatgagacctcgttgccagaacactaagtctctagaaggacagatgaagtatttagtatattgcctggaaaatgcagttgtaaatctcccaaaagaccaggaacagatgatttggttgatcgactttcatggattcactctgtcaaacctctcaatcaaggtgacaaaagaaacagctcatattttggaagactattatcctgaaagactgggaatagctattttatatgatccacccaaaatatttgaaccattttggaagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgtttgacatgagtctggtggagtctgcatttggcggagatgataaggctgattttgatgtcaataaatatgctgagaggatgagagaagatgatgaaaagttgtcttctttctggaagaaagacgataattctgcatcaaatgcacaacttactgtgacagctgatccctctttagagccaacaaattctgattctgattctgaagtcttagatgagaaagtagagaaaccttctcttgatgttgatgaagaagaatcatcaattgaagaaactttgcctggaagtaacagtacaaatgcgaatgtcaaagcagtgtagctaaaggcaatgtcttcaactttttagttttgtaaatgctcacaagatgggcaatttaaccatttctccaaatggttcagaactgaagtgtacttagcagagaacatattaatcaaggtgatgtaatgagtgatatgctataaaatgaatgttgtgcctcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66356" stop="72350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66656" g_stop="66937" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="407" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69223" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="584" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69665" g_stop="69763" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="683" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70114" g_stop="70356" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="926" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71474" g_stop="72059" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1512" r_length="586" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U318530" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66656" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69223"/>
          <exon e_start="69665" e_stop="69763"/>
          <exon e_start="70114" e_stop="70356"/>
          <exon e_start="71474" e_stop="72059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAGGTAATTTGCCCTCAAACTTGCTTAAATTAGCAGTTGTTAATTTTGTGAATGTTACACTACAGGATTCTATTTCTTTATAATGTGTACTGAAAAACTTTTGACTATAATCATTGGCATGGACTGTGACCTCCAATGTTAATATTGAAAGTTGAAACTAAAGATCATCTTGACAATGAGAGATTTCCGTGACACCAGATAAAAGGATATCTTTTGGTATCTTAAGATTGCAGAAGTGAGGCTCATGCATGGGGTTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</genome_strand>
        <mrna_strand>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346745" ref_strand="+" ref_description="SGN-U346745        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actaagagaagctttgaggaggaaaaatgtgttaatgcctaacatgatttcctgttcgcattcccagacggtgcaacaggtaaatgtaaacacggaaatattgcaatgtccacttagctgttaaggaacaatataaacctagattaatggtttagctgcaagagatcgaaacaacatttaaaatctatcaagctcttcttcatttcaactatcagaaaggaacttgttattgatgaaatgatagtcatcaatcatcatccattaaatcagttcgctcaaacacgagtagcaactttaggtaatattcgaagtgcacatcctcatttcagtgattcttatccccaaaaaaacagcacttcactttttctaccaaaaccaagaccaaaccttgtaattgaaaacttccaattgcacaaactttccagtagacagtgcaaacatcaacaagttaccctctttaaggggttttaacataattttaagtccaattgtgcaaatcatcacaccacataagcttatttagctcgctaactaactaactcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="67953" stop="66807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67653" g_stop="67107" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U346745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67653" e_stop="67107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGAGAAGCTTTGAGGAGGAAAAATGTGTTAATGCCTAACATGATTTCCTGTTCGCATTCCCAGACGGTGCAACAGGTAAATGTAAACACGGAAATATTGCAATGTCCACTTAGCTGTTAAGGAACAATATAAACCTAGATTAATGGTTTAGCTGCAAGAGATCGAAACAACATTTAAAATCTATCAAGCTCTTCTTCATTTCAACTATCAGAAAGGAACTTGTTATTGATGAAATGATAGTCATCAATCATCATCCATTAAATCAGTTCGCTCAAACACGAGTAGCAACTTTAGGTAATATTCGAAGTGCACATCCTCATTTCAGTGATTCTTATCCCCAAAAAAACAGCACTTCACTTTTTCTACCAAAACCAAGACCAAACCTTGTAATTGAAAACTTCCAATTGCACAAACTTTCCAGTAGACAGTGCAAACATCAACAAGTTACCCTCTTTAAGGGGTTTTAACATAATTTTAAGTCCAATTGTCCAAATCATCACACCACATAAGCTTATTTAGCTTGCTAACTAACTAACTCATGAT</genome_strand>
        <mrna_strand>ACTAAGAGAAGCTTTGAGGAGGAAAAATGTGTTAATGCCTAACATGATTTCCTGTTCGCATTCCCAGACGGTGCAACAGGTAAATGTAAACACGGAAATATTGCAATGTCCACTTAGCTGTTAAGGAACAATATAAACCTAGATTAATGGTTTAGCTGCAAGAGATCGAAACAACATTTAAAATCTATCAAGCTCTTCTTCATTTCAACTATCAGAAAGGAACTTGTTATTGATGAAATGATAGTCATCAATCATCATCCATTAAATCAGTTCGCTCAAACACGAGTAGCAACTTTAGGTAATATTCGAAGTGCACATCCTCATTTCAGTGATTCTTATCCCCAAAAAAACAGCACTTCACTTTTTCTACCAAAACCAAGACCAAACCTTGTAATTGAAAACTTCCAATTGCACAAACTTTCCAGTAGACAGTGCAAACATCAACAAGTTACCCTCTTTAAGGGGTTTTAACATAATTTTAAGTCCAATTGTGCAAATCATCACACCACATAAGCTTATTTAGCTCGCTAACTAACTAACTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325225" ref_strand="+" ref_description="SGN-U325225        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>ttgtcatgaaaattgcatgactgacggcatggtcaattggtgtttgcaattggtatatactcctatatcactcttctgtaggcctagtcctttactctgggtctatgagtttgctggtaacttgttatcatgcagactgggattagctttgatagcctaaactgagcccaagttgtagtgacttctggctttctgggactccaagacattgtctgcatgtcttgcatagtttgtaattactttttagaaattcagttgtcgtaagatggctgatggattttggtgcgaacaatggctttcccaaaggacagaaatgctgaaactttgaatgaaggctaagtgtctgcagtagaaaacttaattcatgtattgcgatgcatggaattgagtaagaagaatgaggacaatgttgtcaatcagatgaccatggacttctattttcatgaaatctgaacacactgaaacagagaaactataaaaagttaagtgaggaaagacggcacgtgagaactgaatcagggattttgatgaaagctagttttacttgatcaagaaaaaattaactggataaagataagaggctttctgaagaataataaaagcaggaaagtgtgagttatatattaattacttatcctcgcccaagatttggttgggttatttagcaaccattagagcaaaaatatgtgcctgctttaattttaagcattcaagttgttgcattacttaaggttacatttgctttattccaatagattcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="70308" stop="71672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70608" g_stop="71372" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-U325225" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70608" e_stop="71372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTT</genome_strand>
        <mrna_strand>TTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAG-ACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324923" ref_strand="+" ref_description="SGN-U324923        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP:P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7}; contains Pfam profile PF00300: phosphoglycerate mutase family | chr1:7826278-7828307 FORWARD | Aliases: F16L1.10, F16L1_10(evalue: 3e-51, score=197) genbank/nr: putative(evalue: 5e-50, score=200)">
      <seq>ggcgtcgtagctatgatattcctcctccgaacggagaaagtttggaaatgtgtgcagagagagctgttgcctacttcacagagcacattgaaccccaactggcaagtggaaaaaatataatgattgcagcccatgggaactcattgaggtccatcattatgtatcttgacaagctaacatcccaagaggttataagtttggagcttgccactggaatccctatgctttacatattcaaagaaggaaggtttattcgcagaggaagtcctccagccccaactgaggcaacagtctatgcttatacaaagaaattggctcagtacagacaaaagctagatgatatgtttgagtaacgtgacaaggggtttgctttcagttgaagtagatttgatatgcctcttgaagcctagtttctcttgcaaatgggagtgatttgatttttcgtttaatgtagtcttctcatagataggccaaacaaactcggccactttttcataaatgttgttctatatgtgttgatactgtgaattgtaatgtagaatattttttggttttgatcagtatgagtagacagattaaagagaatgagtctactagtgtttttgttcatctatacagcttataaataagacaatgtagaatatacacggggtttcttttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="74079" stop="71983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73779" g_stop="73694" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73693" i_stop="73609" i_length="85">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73608" g_stop="73507" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="188" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73506" i_stop="73417" i_length="90">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73416" g_stop="73297" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="308" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72722" g_stop="72669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="362" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72584" g_stop="72283" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="664" r_length="302" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="675"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U324923" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73779" e_stop="73694"/>
          <exon e_start="73608" e_stop="73507"/>
          <exon e_start="73416" e_stop="73297"/>
          <exon e_start="72722" e_stop="72669"/>
          <exon e_start="72584" e_stop="72283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTCGTAGCTATGATATTCCTCCTCCGAACGGAGAAAGTTTGGAAATGTGTGCAGAGAGAGCTGTTGCCTACTTCACAGAGCACGTAGGCTGAAGCATATTTCAGATCCATCATATTATCAATCCAGTTTTAGGTTTTATGAAATGACATTTTTGCTGTAATGTTGCAGATTGAACCCCAACTGGCAAGTGGAAAAAATATAATGATTGCAGCCCATGGGAACTCATTGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAGGTGGAATTTCAAATTTGTTGGGATCTCTTGCATTTTTTTTTTTGTCTTTTCCTGTTAGGAAACATTACGAATTGAAACTCTTCTTATCAGGTTATAAGTTTGGAGCTTGCCACTGGAATCCCCATGCTTTACATATTCAAAGAAGGAAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAGGTATGCAAATTCTCAAAGTTATGTTTGAAGTCGTTTTATCTTTGTCTAGATGTCACATTCTTGTTTGACAAACAGTTAGATGAAAGTGAAGCCTGAAAGAATCCTGTTGATCAACTGGTTAATTTGCTTTTAAGGGAATGACTAAGAGAAATAGCTTTTGAACATGCAAAGGTTATTATTAGGCATAACAGTTGGGTTACGGCACAAAGTTGAACATCATATAGTTGGTTAAACAAGTATGAAGCTGTGTAATCATATTGTTAAGAATCGGCATATTATGTTGCTGTACCTCTAACAAAGGCCAAACAGCGGTGCTTGCTTCTATACTTTGGAGTTTCATTTCATTTAAAGTTGTCTGAGTAAGAATCCTCAGGTTCTCACCTCTCCAACATTAACTGAGATATTCTTCAGTCAGGCATAGGGTACACAAGAAATAAGTCAAAAAAGGAACATAGTAAAATGCAAAGCATTTAGTGTTTACATTTGTCAAAGTCCTGCATTTTAGCATTTCGCCGATATAGCTAATTGATTATCTTTGTATGACCAAGTACTCCTTTCTTTTTCATAATAACAGAAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAGGTATGTCGATTTACTTCTTGTGTTCTATTCCTTGAAAACCACCTGCTATGATTCTTGAATCTAATTATCTCATGGTTTGTGCAGGGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGGGTTTCTTTTCTCA</genome_strand>
        <mrna_strand>GGCGTCGTAGCTATGATATTCCTCCTCCGAACGGAGAAAGTTTGGAAATGTGTGCAGAGAGAGCTGTTGCCTACTTCACAGAGCAC.....................................................................................ATTGAACCCCAACTGGCAAGTGGAAAAAATATAATGATTGCAGCCCATGGGAACTCATTGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAG..........................................................................................GTTATAAGTTTGGAGCTTGCCACTGGAATCCCTATGCTTTACATATTCAAAGAAGGAAGGTTTATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG....................................................................................GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGCCTAGTTTCTCTTGCAAATGGGAGTGATTTGATTTTTCGTTTAATGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATGAGTAGACAGATTAAAGAGAATGAGTCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGACAATGTAGAATATACACGGGGTTTCTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338109" ref_strand="-" ref_description="SGN-U338109        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP:P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7}; contains Pfam profile PF00300: phosphoglycerate mutase family | chr1:7826278-7828307 FORWARD | Aliases: F16L1.10, F16L1_10(evalue: 6e-05, score=45.4) genbank/nr: LacOPZ-alpha(evalue: 7e-21, score=104)">
      <seq>cctcgtgccgaattcggcacgaggcccaactgaggcaacagtctatgcttatacaaagaaattggctcagtacagacaaaagctagatgatatgtttgagtaacgtgacaaggggtttgctttcagttgaagtagatttgatatgcctcttgaagcctagtttctcttgcaaatgggagtgatttgatttttcgtttaatgtagtcttctcatagataggccaaacaaactcggccactttttcataaatgttgttctatatgtgttgatactgtgaattgtaatgtagaatattttttggttttgatcagtatgagtagacagattaaagagaatgagtatggtagtgtttttgttcatctatccagcttataaattaaaaagggtagaatattcacggggtttcttttctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="73637" stop="71983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73356" g_stop="73297" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72722" g_stop="72669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="112" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72584" g_stop="72283" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="414" r_length="302" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U338109" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73356" e_stop="73297"/>
          <exon e_start="72722" e_stop="72669"/>
          <exon e_start="72584" e_stop="72283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAGGTATGCAAATTCTCAAAGTTATGTTTGAAGTCGTTTTATCTTTGTCTAGATGTCACATTCTTGTTTGACAAACAGTTAGATGAAAGTGAAGCCTGAAAGAATCCTGTTGATCAACTGGTTAATTTGCTTTTAAGGGAATGACTAAGAGAAATAGCTTTTGAACATGCAAAGGTTATTATTAGGCATAACAGTTGGGTTACGGCACAAAGTTGAACATCATATAGTTGGTTAAACAAGTATGAAGCTGTGTAATCATATTGTTAAGAATCGGCATATTATGTTGCTGTACCTCTAACAAAGGCCAAACAGCGGTGCTTGCTTCTATACTTTGGAGTTTCATTTCATTTAAAGTTGTCTGAGTAAGAATCCTCAGGTTCTCACCTCTCCAACATTAACTGAGATATTCTTCAGTCAGGCATAGGGTACACAAGAAATAAGTCAAAAAAGGAACATAGTAAAATGCAAAGCATTTAGTGTTTACATTTGTCAAAGTCCTGCATTTTAGCATTTCGCCGATATAGCTAATTGATTATCTTTGTATGACCAAGTACTCCTTTCTTTTTCATAATAACAGAAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAGGTATGTCGATTTACTTCTTGTGTTCTATTCCTTGAAAACCACCTGCTATGATTCTTGAATCTAATTATCTCATGGTTTGTGCAGGGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGGGTTTCTTTTCTCA</genome_strand>
        <mrna_strand>CCTCGT-GCCGAATTCG-GCACGAGGCCCAACTGAGGCAACAGTCTATGCTTATACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG....................................................................................GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGCCTAGTTTCTCTTGCAAATGGGAGTGATTTGATTTTTCGTTTAATGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATGAGTAGACAGATTAAAGAGAATGAGTATGGTAGTGTTTTTGTTCATCTATCCAGCTTATAAATTAAAAAGGGTAGAATATTCACGGGGTTTCTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325546" ref_strand="+" ref_description="SGN-U325546        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP:P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7}; contains Pfam profile PF00300: phosphoglycerate mutase family | chr1:7826278-7828307 FORWARD | Aliases: F16L1.10, F16L1_10(evalue: 2e-29, score=125) genbank/nr: At1g22170(evalue: 1e-27, score=125)">
      <seq>atatacacactttcttggagaaatttttttcaagaaaacgatttctactaagcatcccatcatttccccctcttaatcttgatttgtcagacacattttaccctataaagactcaatctttataccatttgatgcatgtaatgtgccatcttcttctccgccaacttttcttgatataaactcaacaccctttttcgttttcccccatttaaccgcaccaaaagaaaaagggggaaaaacaagatttttcttggatagcatcgttcccatttttcttgctttggtttcttcgccaacttgcaagcatcgtttggctgtataaataagcaatggctgcaacgacacttaaccaatcggttggaactcttcggtcttgtagagtaaatggtaactctggattgtgtcctgattatgggcatgtttcctttagaccggtgtccaagggtttcaaggttgatgtgggattgttgagaggaggaagtttttgttctagaaagacaagtacttgtgtaattcaagcctctgcttctcaagctacggtgttcgatgaagcttcagcaccatctagtgccaccaccagtgactccaacaagaaaacaagtgaagctgctttgatcctgattagacaccgtgagtctatgtggaacgaaaaaaacttgttcactggttgtgtagatgtgcctttgactaataaaggcgtggaagaggccgttgaagctgggaaacgaattaataatatacctgtccaactgatctatacttctgctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="76203" stop="74071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75903" g_stop="75576" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74752" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="600" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.389" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74542" g_stop="74371" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="772" r_length="172" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U325546" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75903" e_stop="75576"/>
          <exon e_start="75023" e_stop="74752"/>
          <exon e_start="74542" e_stop="74371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACACACTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGCGTATGATCTCTGATTACTTCTCTCTATATTCTGCATTTTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAAGTATGATAGTCTATCTCTTGAACTGTTATTTCCAAATCATCATAAGCACATCATAAGATAAGAAGAATTTGTGATCATTTCTTTCATTATCACGTTAAGAAGTAATTGTTCCCCTTCCTATAAATGATTTTCGTGGGATAAATTATATGATTGTTTTAAGCTACTCTGCAGCACTGCATCTGATTCCCATCTTCCTTATTTCCCTTTAGGTGAAGCTGCTTTGATCCTGATTAGACACGGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAGGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGAT</genome_strand>
        <mrna_strand>ATATACACACTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAA.................................................................................................................................................................................................................GTGAAGCTGCTTTGATCCTGATTAGACACCGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAAGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAATAATATACCTGTCCAACTGATCTATACTTCTGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314969" ref_strand="+" ref_description="SGN-U314969        Tomato 200607 #1 [49 ESTs aligned] arabidopsis/peptide: AT1G22160.1 | Symbol: None | senescence-associated protein-related, similar to senescence-associated protein SAG102 (GI:22331931) (Arabidopsis thaliana) | chr1:7823138-7823960 FORWARD | Aliases: F2E2.23, F2E2_23 (evalue: 3e-23, score=105) genbank/nr: gi|18395081|ref|NP_564160.1| senescence-associated protein -related [Arabidopsis thaliana] gi|18252871|gb|AAL62362.1| unknown protein [Arabidopsis thaliana] gi|21387061|gb|AAM47934.1| unknown protein [Arabidopsis thaliana] gi|21592437|gb|AAM64388.1| unknown [Arabidopsis thaliana](evalue: 2e-21, score=105)">
      <seq>ggccgaattactcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaaaaaaaaaaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttttttgaagaacccagattatttttgagttgagtacctttttattgagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92401" stop="90752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92103" g_stop="91714" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91052" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="971" r_length="583" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U314969" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92103" e_stop="91714"/>
          <exon e_start="91625" e_stop="91052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAG----------AAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAG</genome_strand>
        <mrna_strand>GGCCGAAT-T-ACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAAAAAAAAAAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACC-TTTTTATTGAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="98464" stop="97431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98180" g_stop="97719" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98180" e_stop="97719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGAGTAAATTTTTTCTTCGAATATGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAATTATACCTTGAATTTTGATAGAAGAATCATATATATCCCTAAATA--ATTTTTAAAAAAAATTTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCATGGGTATATGTGAGCCGTTTGTATAACGATAACGGCATATATGAGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTTTATTTTTATGTTATTGATTA</genome_strand>
        <mrna_strand>TTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTAT-TTTTTAAAAT-TTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327253" ref_strand="+" ref_description="SGN-U327253        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | tRNA modification GTPase, putative, similar to tRNA modification GTPase trmE (strain PCC 7120, Anabaena sp.) SWISS-PROT:Q8YN91 | chr1:29338394-29341345 FORWARD | Aliases: F28K19.23, F28K19_23(evalue: 7e-128, score=453) genbank/nr: putative(evalue: 2e-126, score=455)">
      <seq>tcagtgtcatggaagtgaagtgtgtcttcaacgtgttttgagggcgtgtctggaggctggagcaaagcttgcggaaccaggtgaattcactctgcgcgccttcttaaatggtcgtttggatctttctcaagctgagaatgtcgaaaagttaatatcagcaaagtcagtggctgctgcagatgctgcattggcaggaatagagggtgggttttcttctttggtcaaatcactaagaactcagtgtatggagttgctaactgaaattgaagctcgtcttgacttcgatgacgagatgccaccccttgatctgaatcttattatggacaaaatatatgggatgctgcatgatctggataatgcgctggaaactgccaactatgacaagcttctgcagtcaggactacagattgcaattattggtcgacctaatgttgggaaatcaagccttcttaatgcatggagcaaaactgatagagcaatagttacaaatattgctggtacgacacgggatgttgtggaagccagtgtttctgttcgtggtgttcctgttacacttcttgatactgcaggaatcagggagactgatgatattgtggaaaaaattggtgtggaaagatctgaagctgttgccagaaatgctgatgtcgtaataatgaccataagtgcagcagaggggtggactccggaggatacaaagctccttgagagaatccaaaggagtcagtttcagactgcgtcaggatgtagctctccattgattctggtaatcaacaaaatagactgtgctccatccgactcttatgaatgggttaatacatgtggcttctccttcaacaagcacattccaacatgtgctgtcaacggtcaagggattccagatcttgaggcagcaataatagaaattatgggtctcaataagatccctgtcggtggtcgcagatggacagtcaaccagagacaatgtgagccacttattcgaacaaaggaggctttcctgaaggttgaaatcgtcaattgaggaagaatatgccctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="112886" stop="107343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112886" g_stop="112871" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="80" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112870" i_stop="112591" i_length="280">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112590" g_stop="112469" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="202" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112468" i_stop="112291" i_length="178">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.310" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112290" g_stop="112087" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="406" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112086" i_stop="111839" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111838" g_stop="111779" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="466" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111778" i_stop="110928" i_length="851">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110927" g_stop="110789" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="605" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110788" i_stop="110189" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110188" g_stop="110070" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="724" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110069" i_stop="108897" i_length="1173">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108896" g_stop="108666" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="955" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108665" i_stop="107724" i_length="942">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.562" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107723" g_stop="107643" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1038" r_length="83" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U327253" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>972</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112886" e_stop="112871"/>
          <exon e_start="112590" e_stop="112469"/>
          <exon e_start="112290" e_stop="112087"/>
          <exon e_start="111838" e_stop="111779"/>
          <exon e_start="110927" e_stop="110789"/>
          <exon e_start="110188" e_stop="110070"/>
          <exon e_start="108896" e_stop="108666"/>
          <exon e_start="107723" e_stop="107643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCGGAACCAGGTTAGCTTCATCCTTGTATTCTTTAATTGACTGTTTTGATGTCTATAACCTGCAGCAGTTACGGTTTTGATGAGAATTGATCTCTATAGTTCGAAAACTGTTGTGAAGATTTATTTGTCTGTACATCACTACATCATTCTATAGTCCCGTAGCATTGACTTGTCAAAGCTTTAGTTACTAGGCAAATGCACAGCAACTGTCTCCTTTTTCTGTGCAGCCATAGAATAGGTGAGAATCTTTCTTCTCCAGCTCACCTCTTTTAATGTTTCACTTTTATTAGGTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCATTGGCAGGAATAGAGGTGTTCAGCTGTATAAAATCACTTTTTAATTACAAGAACTGTTGACCCTTCTAAAAAGAAAAGAACTGTTGACCCTTTGATACATTAACAAGGGCACAGATTCAGCACTAAGTTTTATTTTGTTTGCCTTTTATCCTAGTGCTGGGGAATGATGCTGAATGATAGTTCCTTTTGTCAGGGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAACTGAAATTGAAGCTCGTCTTGACTTCGATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAGGTTTATATTGCACTAAGACTGACCAAGTTCTTATAAAAGCCTAGTGGACTTTTTTCCTGAGAACTAAATAACAAAGCAAGGAGGAGAAAGGAACAAAGGACGCATGTCTTAACTTGTCATTGAATTTGAGAGTAACTTAAAGCACATCTAGCTGTTTAGCTGGCTGTCCAAAAATGGATTTTTTTTTTATGTTTCCCTGCTTTGAACTAATAATTAAGACAACATAATTTTCAATGACTATCTTGCAGATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAAGTATGTTCCACCAATATACCCATTATTTACCATCTCATCATTGATTCCTGTAATTATTGTTTTTTTAAATAGTTATCACTGCTTCTCTTGACAGTGGCATAAACTTTTAACTCAGTAACTAAATCTGAAACAAAATGTGGACCAGTAAATAGAAATCTCACCTGTAATTAGAAACATATACGAAGAAGTTCCATGCAATGCCTAGCTCCCAGTTCTTATAATTTGCATAGGATGTGACTTGCACCTTTAGCTCTAGTTGAGACATTCCAGGGATCCATTGAAGAACACTTCATCACTTTGCTTATTTCTAAAGACCAAATTGTTCCTTCTGGTATGGAAAGTATATATGGATTTGAATCGTTAGTTTCAGAATCTAAATTGTATACTAGCCAGCAATAGGTTATGCTTGACTCAAGTTATCACGATGAATTTAGCTACAAGCCACAATTTGGAACTTTTCCCAAACCAGCAACTGTAGGACAGTAAAAAAAACTAATAATGAACCATTTCAATCCTCTAATTTTTAATTGTCTACCTTAAATTGTCGCATAATATAAAATAACTTGTGTCCTTAACTGTGCGTGATATTTTCAGTATTGCAACTCTTATTGCGTTCCACTTGCTTCTATGACCATATAAACATGATTGTTAATCTTTACTCAAACCCCTACTACTACTTATAACAAGACCATAAATAGAAAGTGTTTCATGACAAATATTTTCCTCAAAATATAAAGTCATATTAAGCACACTCCCATTCTTTAGAATTTCTCTAGTCTAAAGTGTCTGCTTCCCGTGCTATTATCTTGCTGGCATTCATTTCTAATCACGTGCCTTCTATTAGCGTGCAGACTGATAGAGCAATAGTTACAAATATTGCTGGTACGACACGGGATGTTGTGGAAGCCAGTGTTTCTGTTCGTGGTGTTCCTGTTACACTTCTTGATACTGCAGGAATCAGGGAGACTGATGATATTGTGGAAAAAATTGGTAAGACCTTTTTATTTGCCAAGTTTATATCATTTCGAATATTGACTGGAGCCTGCTGCTGAAATTTTGGTCATTGAACAGATAAAATATTTAATGAACCAGATTATTACTATTATTATATAATAAATTCCTTTTTCATTGAGAAGATTTACCCTTGAAAGACAATTTATCATTTCTGATACAGAGTCTGATGGCTCAATACTTCTTATGCATTTAAGTGTATTTCTGTCATTTCTACATTTGTTTTCTCATCTAACTCGTGGCATTTAGCTTATATTTGGATCAGAAACATTACTTCATTTTTAGAGTTTGCTCATGATTGTGTCTCCAAAGAATTGCATATGTTTAATGTGTATGCACTTTCAGAGCTATCATTGATCTTGCATCAACATTTCTTTTGTTTAATCTCCGGTTGGAGTTCTTGGTGAACGTAGTCACCACCCAATGATGGTTCCTTGTTATGTTACCTCAGCATTGTATTTCTTGAACTCTAATTAATGATATTGTTTCGTAGTCTCCTTTTATTCCATCAGTGAAATTAGAGATGAACTAGCTGTTAAATTTCTATTTTATTTGATTTTCCTAGCAAATCATTCACAGGTGTGGAAAGATCTGAAGCTGTTGCCAGAAATGCTGATGTCGTAATAATGACCATAAGTGCAGCAGAGGGGTGGACTCCGGAGGATACAAAGCTCCTTGAGAGAATCCAAAGGAGTCAGGTTTATAAGCTATTCCATTCACGTTATCAGTAACTTTGAATATGAAATGGTCTGTTTCTTCCTAATCTGAACTTCTATAATCTGTTATCGTCAAGTTGAAGAAAGATATACTTGCTTTATTTTGTCTTGTTATTATTGGTTTCCATTAATTTGAGTTTGTCAAAGTAAGTCTAGTATGGATATTTGTTGCATCTGCTGGAAGTTAGTGTGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAATTATTGTTAGACAGCTGCAGTTGATTTTTGTTTCTGCAGCTCTGCTATTCTTTTCTGGTATTAGGAGAAAACATTTGACATTAAGTTTATTTCTGTAGTTTCAGACTGCGTCAGGATGTAGCTCTCCATTGATTCTGGTAATCAACAAAATAGACTGTGCTCCATCCGACTCTTATGAATGGGTTAATACATGTGGCTTCTCCTTCAACAAGCACATTCCAACATGTGCTGTCAACGGTCAAGGGATTCAAGATCTTGAGGCAGCAATAATAGAAATTATGGGTCTCAATAAGATCCCTGTCGGTGGTCGCAGATGGACAGTCAACCAGGTTAGCTTGCTGCCATCTTTTTCTCTCTCAGAGTCCTTAATGTAGAACCATGTTTTTACATTGTTACATAGACTTGTGCTGGTTAAAAAGTAAAAGAAAATGGCTTATTCTACGGTAAAGGAATGAGGAGAATGCTGATTTCATGCTAGATAACTCTGATGAGAATCGGCATATGATTTTTGAACCTTCTGTCAGGAGTGGAATCAGGGGAAGTAAAAGTAATCTTCAGACTTACTATGAACAAATTGTTCTCATTATCTCCTTAAGTAATACTCTAGTGTCTAGCTTTTTACCTAAAAAGGAAAAAGGTAACGAGAGGATAAATGAGTGGTAAAATGAGAGTTAGCAATTGAAAAATCTATCTGTATCTTTATTAAAAACAAGGTTACAAATATTGTCTGTTATTTCAGTTGAATCCTTGTGATGGTATCAAACTGCTTGCGACTTAATTTTCCTCAACCTTCTATCTGAATTCATCTGTCATTACAGATGATCTTTCTTATTTGCATATCTTTCTCCTCGTTTCTTTTTATGCATGAATGATGAAATCTATTCCTTGCATTAAGGATGGTAAGAACTGTTTAGACAGGAAAATCGTGTTAGTTCTAGATCTTCTCATACTGAGATCTTCAACATTAGGTGTTGGTGTGTCCTTTAGGCATAGCGGCATTTGCCATTTAACATATTGTCAAATGTCCTACCGAATTGGACTGCTAAGAAAAGCTTTGTTACTACCTCAAACTTGAATCACTCTAGACCTACACGACTACACTAATGTCTCCTACTCTTCACTAAAAGGACTGTGCTTTTTATGTTGTTCTCTATGAAGTCGACTTTTTTAAGGTATTCATTCCTTATTTATAGTCCGTCCATCTATAATTTCATGGCATTATAGTAAGAAACACAATTCTTCACTAAACGGCAGCTTTTTCTGGTTTCCAGAGACAATGTGAGCAGCTTATTCGAACAAAGGAGGCTTTCATG-AGGTTGAAATCGTCAATTGAGGAAG-ATATGCCCTTTGAT</genome_strand>
        <mrna_strand>AAGCTTGCGGAACCAG........................................................................................................................................................................................................................................................................................GTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCATTGGCAGGAATAGAG..................................................................................................................................................................................GGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAACTGAAATTGAAGCTCGTCTTGACTTCGATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAG........................................................................................................................................................................................................................................................ATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCAATAGTTACAAATATTGCTGGTACGACACGGGATGTTGTGGAAGCCAGTGTTTCTGTTCGTGGTGTTCCTGTTACACTTCTTGATACTGCAGGAATCAGGGAGACTGATGATATTGTGGAAAAAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAGATCTGAAGCTGTTGCCAGAAATGCTGATGTCGTAATAATGACCATAAGTGCAGCAGAGGGGTGGACTCCGGAGGATACAAAGCTCCTTGAGAGAATCCAAAGGAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGACTGCGTCAGGATGTAGCTCTCCATTGATTCTGGTAATCAACAAAATAGACTGTGCTCCATCCGACTCTTATGAATGGGTTAATACATGTGGCTTCTCCTTCAACAAGCACATTCCAACATGTGCTGTCAACGGTCAAGGGATTCCAGATCTTGAGGCAGCAATAATAGAAATTATGGGTCTCAATAAGATCCCTGTCGGTGGTCGCAGATGGACAGTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAATGTGAGCCACTTATTCGAACAAAGGAGGCTTTCCTGAAGGTTGAAATCGTCAATTGAGGAAGAATATGCCCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333041" ref_strand="+" ref_description="SGN-U333041        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tgctctatattatgcaaccaatgaagagccaaagttatcatcagtaagctggagactactagtgccttcttaaacttaagagtcacctaaagagggcccatggagaatgggagtaggtacagttaaagatagttccccagttcagtgtttgagtcgctgcaagtggatattgcattttgaagtttcaatctattataagaaatactgaaacttgatgatctggaggtattctgttatgttcaaatttaagcaagaagtgtgtactataatgcgatgtcttcaaggaataagaaagatgcaaggtgtcttattctgaacttaataaaaaagtatcttacattgttgaataacaaattaaaaaagaaatggaattgagaggaggagactaaggaagatttcactatctttttaaattattagggagctttgccaaagatgaagggagatagaagagctgaataaaattagggtttctagcttcatctgaagctgatatctaaagaaaagaccgaaagaacagttaagtgctcatattgaatggcctttgtactttatatgctagttcttaataacatacaagtttccgctctgtccccacacctgaaataagggcctaggaaaatgagacacctttccacgtatttgtattcaacttggacccatgtatgtaagaaagaccaaggctattgacggaatctatgttgcaaaacttgttctgattgatttaagatttgcttttttgaagtaagaagtttgtgatttgtgtctagagaattccatctttcttcatgaaaaaatttatatattctcctttatcattgaacttgtagaagaaagtcaccataattacttagcttttgttttcaattattgttagacagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="110161" stop="108678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109861" g_stop="108978" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-U333041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109861" e_stop="108978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAATTATTGTTAGACAGCTG</genome_strand>
        <mrna_strand>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAATTATTGTTAGACAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5377" PGL_stop="221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5377" e_stop="5237"/>
            <exon e_start="4453" e_stop="4297"/>
            <exon e_start="4204" e_stop="4037"/>
            <exon e_start="3941" e_stop="3855"/>
            <exon e_start="651" e_stop="517"/>
            <exon e_start="437" e_stop="352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.978"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5377" e_stop="5237" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="5236" i_stop="4454" i_length="783"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4453" e_stop="4297" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.822" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4296" i_stop="4205" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4204" e_stop="4037" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4036" i_stop="3942" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3941" e_stop="3855" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.876">
            <gDNA_intron_boundary i_start="3854" i_stop="652" i_length="3203"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="651" e_stop="517" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="437" e_stop="352" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5377" stop="5237"/>
              <exon start="4453" stop="4297"/>
              <exon start="4204" stop="4037"/>
              <exon start="3941" stop="3855"/>
              <exon start="651" stop="517"/>
              <exon start="437" stop="352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACACTGTTTCTCACTAATTTTCAATTAGTTTTCACAGTTTAATTATCTGAAGAACTCCGGAGATTTTTTTCCGGCGTGAGGTGGTTACTTTTTCCATTTGTTTCTCGTGAAAATCTCTCAACTTCCGATACTTTCAAG : GATAATGGCTCTCTCTCAAAATCAGGAGTTGGAGTATATGGTGGATGAGTACTATGACACTACTGATTTTGATGACAGCACTTTTGGGGGTGAATCGCCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTG : AGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAG : GAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAG : TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATG : AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGG</gDNA_template>
            <first_frame> Y  T  L  F  L  T  N  F  Q  L  V  F  T  V  *  L  S  E  E  L  R  R  F  F  S  G  V  R  W  L  L  F  P  F  V  S  R  E  N  L  S  T  S  D  T  F  K  :  D  N  G  S  L  S  K  S  G  V  G  V  Y  G  G  *  V  L  *  H  Y  *  F  *  *  Q  H  F  W  G  *  I  A  A  K  Y  *  P  G  Y  L  C  R  L  G  I  *  G  R  F  *  S   : E  K  V  K  A  G  Y  I  S  Y  R  S  *  K  W  Q  G  Y  T  G  N  T  L  G  K  A  *  F  Y  Q  R  Q  V  P  R  D  E  V  E  A  V  *  E  L  R  E  P  V  S  L  S  *  R  S  *  K   : G  V  Q  G  S  R  K  R  T  Q  L  L  R  L  P  V  Q  Y  K  A  R  Q  I  N  Y  R  A  L  S   : V  E  E  S  L  V  V  D  I  K  T  *  C  V  S  H  A  K  L  L  C  D  A  L  V  L  T  S  W  K  G  G  R  S  A  *  C  C  *  A  I  D  A  H  Y   : E  I  P  W  I  S  V  S  N  T  S  P  S  A  D  Q  H  Y  G  C  *  R  W  F  A  G  C  W  G </first_frame>
            <second_frame>  I  H  C  F  S  L  I  F  N  *  F  S  Q  F  N  Y  L  K  N  S  G  D  F  F  P  A  *  G  G  Y  F  F  H  L  F  L  V  K  I  S  Q  L  P  I  L  S  R :   I  M  A  L  S  Q  N  Q  E  L  E  Y  M  V  D  E  Y  Y  D  T  T  D  F  D  D  S  T  F  G  G  E  S  P  R  S  T  D  P  D  I  S  A  D  S  E  F  E  D  D  F  E  V  :  R  K  S  K  L  D  T  S  A  I  E  A  R  N  G  K  D  I  Q  G  I  P  W  E  R  L  N  F  T  R  D  K  Y  R  E  T  R  L  K  Q  Y  K  N  Y  E  S  L  S  R  S  R  E  D  L  E  K  :  E  C  K  E  V  G  K  G  H  S  F  Y  D  F  Q  F  N  T  R  L  V  K  S  T  I  V  H  F  Q  :  L  R  N  L  L  W  S  T  S  K  H  D  V  Y  L  M  Q  N  Y  S  V  M  H  W  S  S  L  L  G  K  G  E  E  V  L  N  V  A  R  P  L  T  P  T  M  :  K  Y  P  G  S  A  S  Q  T  L  P  R  V  Q  I  S  T  M  A  V  R  D  G  L  L  A  A  G   </second_frame>
            <third_frame>   Y  T  V  S  H  *  F  S  I  S  F  H  S  L  I  I  *  R  T  P  E  I  F  F  R  R  E  V  V  T  F  S  I  C  F  S  *  K  S  L  N  F  R  Y  F  Q   : G  *  W  L  S  L  K  I  R  S  W  S  I  W  W  M  S  T  M  T  L  L  I  L  M  T  A  L  L  G  V  N  R  R  E  V  L  T  R  I  S  L  Q  T  R  N  L  R  T  I  L  K  * :   E  S  Q  S  W  I  H  Q  L  *  K  L  E  M  A  R  I  Y  R  E  Y  L  G  K  G  L  I  L  P  E  T  S  T  A  R  R  G  *  S  S  I  R  T  T  R  A  C  L  A  L  V  K  I  L  K  R :   S  A  R  K  *  E  K  D  T  A  S  T  T  S  S  S  I  Q  G  S  S  N  Q  L  S  C  T  F  S :   *  G  I  S  C  G  R  H  Q  N  M  M  C  I  S  C  K  T  T  L  *  C  T  G  P  H  F  L  E  R  G  K  K  C  L  M  L  L  G  H  *  R  P  L  * :   N  T  L  D  Q  R  L  K  H  F  P  E  C  R  S  A  L  W  L  L  E  M  V  C  W  L  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5295" stop="5237"/>
                    <exon start="4453" stop="4297"/>
                    <exon start="4204" stop="4037"/>
                    <exon start="3941" stop="3855"/>
                    <exon start="651" stop="517"/>
                    <exon start="437" stop="354"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGYFFHLFLVKISQLPILSRIMALSQNQELEYMVDEYYDTTDFDDSTFGGESPRSTDPDISADSEFEDDFEVRKSKLDTSAIEARNGKDIQGIPWERLNFTRDKYRETRLKQYKNYESLSRSREDLEKECKEVGKGHSFYDFQFNTRLVKSTIVHFQLRNLLWSTSKHDVYLMQNYSVMHWSSLLGKGEEVLNVARPLTPTMKYPGSASQTLPRVQISTMAVRDGLLAAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2716" e_stop="2224"/>
            <exon e_start="651" e_stop="517"/>
            <exon e_start="437" e_stop="327"/>
            <exon e_start="246" e_stop="221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2716" e_stop="2224" e_length="493"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.876">
            <gDNA_intron_boundary i_start="2223" i_stop="652" i_length="1572"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="651" e_stop="517" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="437" e_stop="327" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="326" i_stop="247" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="246" e_stop="221" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2716" stop="2224"/>
              <exon start="651" stop="517"/>
              <exon start="437" stop="327"/>
              <exon start="246" stop="221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATG : TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATG : AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGGTTTCCAAGGGGAGCTTATCTGTAAG : TATTTAAACCAACCTGGAGTTGCATT</gDNA_template>
            <first_frame> L  S  Q  S  C  L  L  C  S  I  L  L  L  V  *  Q  I  Y  F  C  S  V  K  H  N  S  G  G  *  W  L  K  F  P  N  F  Q  F  S  F  V  C  P  S  R  E  *  S  *  F  Y  F  N  S  S  V  V  V  L  H  F  Q  L  V  V  N  *  F  C  C  L  F  C  M  V  H  P  F  L  F  K  A  H  C  S  L  Q  T  F  L  G  C  C  S  R  R  V  *  V  D  E  H  F  F  A  S  H  Y  V  K  V  V  V  F  *  F  L  L  *  M  M  F  V  *  I  V  F  F  Q  I  N  N  Q  I  L  Y  V  H  C  Y  C  I  Y  L  S  A  L  Q  A  G  C  S  Y  Y  V  S  S  W  C  K  H  F  P  Y   : V  E  E  S  L  V  V  D  I  K  T  *  C  V  S  H  A  K  L  L  C  D  A  L  V  L  T  S  W  K  G  G  R  S  A  *  C  C  *  A  I  D  A  H  Y   : E  I  P  W  I  S  V  S  N  T  S  P  S  A  D  Q  H  Y  G  C  *  R  W  F  A  G  C  W  G  F  P  R  G  A  Y  L  *   : V  F  K  P  T  W  S  C  I </first_frame>
            <second_frame>  *  V  K  V  V  C  Y  V  P  F  Y  Y  L  C  D  R  S  T  F  A  V  S  N  I  T  V  E  A  D  G  *  N  F  R  T  S  N  S  L  L  C  V  P  L  E  N  N  L  D  F  I  S  I  H  L  S  W  S  S  I  F  S  W  S  L  T  S  S  V  A  S  S  A  W  F  I  P  F  Y  S  R  P  I  V  H  C  K  P  F  S  A  V  A  L  E  E  F  E  L  M  N  I  F  L  L  V  I  M  *  K  W  L  C  F  N  S  C  C  K  *  C  L  F  E  L  F  S  F  K  *  I  T  R  Y  C  M  C  I  V  I  V  S  I  F  Q  P  Y  K  Q  V  A  V  I  M  *  A  A  G  A  S  I  F  H  M  :  L  R  N  L  L  W  S  T  S  K  H  D  V  Y  L  M  Q  N  Y  S  V  M  H  W  S  S  L  L  G  K  G  E  E  V  L  N  V  A  R  P  L  T  P  T  M  :  K  Y  P  G  S  A  S  Q  T  L  P  R  V  Q  I  S  T  M  A  V  R  D  G  L  L  A  A  G  G  F  Q  G  E  L  I  C  K  :  Y  L  N  Q  P  G  V  A   </second_frame>
            <third_frame>   E  S  K  L  F  V  M  F  H  S  T  T  C  V  T  D  L  L  L  Q  C  Q  T  *  Q  W  R  L  M  V  E  I  S  E  L  P  I  L  F  C  V  S  L  *  R  I  I  L  I  L  F  Q  F  I  C  R  G  P  P  F  S  V  G  R  *  L  V  L  L  P  L  L  H  G  S  S  L  S  I  Q  G  P  L  F  I  A  N  L  S  R  L  L  L  *  K  S  L  S  *  *  T  F  F  C  *  S  L  C  E  S  G  C  V  L  I  L  V  V  N  D  V  C  L  N  C  F  L  S  N  K  *  P  D  I  V  C  A  L  L  L  Y  L  S  F  S  L  T  S  R  L  Q  L  L  C  E  Q  L  V  Q  A  F  S  I  C :   *  G  I  S  C  G  R  H  Q  N  M  M  C  I  S  C  K  T  T  L  *  C  T  G  P  H  F  L  E  R  G  K  K  C  L  M  L  L  G  H  *  R  P  L  * :   N  T  L  D  Q  R  L  K  H  F  P  E  C  R  S  A  L  W  L  L  E  M  V  C  W  L  L  G  V  S  K  G  S  L  S  V  S :   I  *  T  N  L  E  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2250" stop="2224"/>
                    <exon start="651" stop="517"/>
                    <exon start="437" stop="327"/>
                    <exon start="246" stop="223"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAGASIFHMLRNLLWSTSKHDVYLMQNYSVMHWSSLLGKGEEVLNVARPLTPTMKYPGSASQTLPRVQISTMAVRDGLLAAGGFQGELICKYLNQPGVA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2622" stop="2389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRTSNSLLCVPLENNLDFISIHLSWSSIFSWSLTSSVASSAWFIPFYSRPIVHCKPFSAVALEEFELMNIFLLVIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3753" e_stop="3283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="3753" e_stop="3283" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3753" stop="3283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTTTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAACAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGA</gDNA_template>
            <first_frame> L  V  S  V  V  S  F  C  I  I  Q  L  N  L  A  N  D  S  H  G  C  L  S  H  S  C  L  S  C  F  F  S  S  F  I  F  N  W  F  F  *  L  F  V  I  L  H  H  Y  E  L  V  *  T  K  G  F  F  F  *  N  W  *  C  I  K  G  F  G  Y  L  Q  S  N  H  C  V  S  F  W  S  M  I  R  V  A  F  F  S  S  P  C  N  N  Y  T  S  A  G  A  L  L  L  M  F  W  I  F  *  F  K  L  L  G  C  W  F  T  L  S  L  I  P  E  V  W  S  L  H  P  H  R  R  I  Q  *  V  *  C  L  I  W  N  N  L  E  I  D  Y  V  C  V  *  L  I  C  G </first_frame>
            <second_frame>  *  S  L  L  S  H  F  A  L  F  N  *  T  W  Q  T  T  P  M  A  A  F  L  I  L  A  F  H  V  F  F  P  H  S  F  L  T  G  F  F  S  C  L  L  F  Y  I  I  M  S  *  F  K  Q  K  D  F  F  F  E  T  G  N  V  *  K  D  L  V  I  Y  S  L  T  I  V  *  A  F  G  R  *  S  A  S  P  F  S  P  L  H  A  I  T  I  L  L  Q  V  L  C  S  *  C  S  G  Y  F  D  L  N  C  *  A  V  G  S  P  F  H  *  F  Q  R  Y  G  V  C  I  L  I  E  E  F  S  E  F  D  A  *  Y  G  T  T  *  R  L  T  M  C  V  S  N  S  F  V   </second_frame>
            <third_frame>   S  L  C  C  L  I  L  H  Y  S  I  K  P  G  K  R  L  P  W  L  P  F  S  F  L  P  F  M  F  F  F  L  I  H  F  *  L  V  F  L  V  V  C  Y  F  T  S  L  *  V  S  L  N  K  R  I  F  F  L  K  L  V  M  Y  K  R  I  W  L  F  T  V  *  P  L  C  E  L  L  V  D  D  P  R  R  L  F  L  L  S  M  Q  *  L  Y  F  C  R  C  S  A  P  N  V  L  D  I  L  I  *  T  V  R  L  L  V  H  P  F  I  N  S  R  G  M  E  S  A  S  S  S  K  N  S  V  S  L  M  L  D  M  E  Q  L  R  D  *  L  C  V  C  L  T  H  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5101" e_stop="4554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="5101" e_stop="4554" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5101" stop="4554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAAATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTT</gDNA_template>
            <first_frame> F  Y  C  P  L  F  Y  A  N  T  C  E  N  A  C  *  V  F  S  A  M  T  F  S  I  L  *  F  *  C  C  *  A  F  Y  S  T  I  F  W  L  F  S  I  V  F  D  V  I  K  L  F  I  P  L  N  S  G  Y  F  V  *  F  D  V  V  K  L  F  I  P  L  Y  S  V  Y  F  L  *  F  L  C  C  *  A  V  Y  S  T  E  F  W  *  F  S  I  V  L  M  L  L  I  F  L  F  H  *  I  L  A  T  S  Y  Y  F  D  V  F  L  G  *  I  L  A  I  F  C  S  F  D  V  V  K  I  L  S  P  L  K  S  D  S  F  L  L  F  A  K  F  T  L  *  F  K  N  L  N  V  F  L  S  R  F  V  F  N  K  Y  F  I  *  M  V  *  Y  F  N  F  L  L  I  F   </first_frame>
            <second_frame>  F  I  A  L  F  S  M  L  I  P  V  K  M  H  A  E  F  F  L  R  *  P  F  L  Y  F  S  F  D  V  V  K  L  F  I  P  Q  Y  F  G  Y  F  L  *  F  L  M  L  L  S  F  L  F  H  *  I  L  A  T  L  Y  S  L  M  L  L  S  F  L  F  H  C  I  L  S  I  F  C  S  F  Y  V  V  K  L  F  I  P  L  N  S  G  D  F  L  *  F  *  C  Y  *  S  F  Y  S  T  K  Y  W  L  L  P  I  I  L  M  F  F  S  A  K  F  S  L  S  S  V  V  L  M  L  L  R  F  C  L  H  *  N  L  T  V  F  Y  C  L  R  N  S  P  C  N  S  K  I  *  M  F  S  L  V  D  L  F  L  I  N  I  S  Y  K  W  F  S  I  S  I  F  C  *  S  F  </second_frame>
            <third_frame>   L  L  P  S  F  L  C  *  Y  L  *  K  C  M  L  S  F  F  C  D  D  L  F  Y  T  L  V  L  M  L  L  S  F  L  F  H  N  I  L  A  I  F  Y  S  F  *  C  Y  *  A  F  Y  S  T  E  F  W  L  L  C  I  V  *  C  C  *  A  F  Y  S  T  V  F  C  L  F  S  V  V  F  M  L  L  S  C  L  F  H  *  I  L  V  I  F  Y  S  F  D  V  I  N  L  F  I  P  L  N  T  G  Y  F  L  L  F  *  C  F  S  R  L  N  S  R  Y  L  L  *  F  *  C  C  *  D  F  V  S  T  K  I  *  Q  F  S  I  V  C  E  I  H  L  V  I  Q  K  F  K  C  F  P  *  *  I  C  F  *  *  I  F  H  I  N  G  L  V  F  Q  F  F  A  N  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12494" PGL_stop="11800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12494" e_stop="12481"/>
            <exon e_start="12365" e_stop="12277"/>
            <exon e_start="12173" e_stop="11800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12494" e_stop="12481" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12480" i_stop="12366" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12365" e_stop="12277" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.743" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12276" i_stop="12174" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12173" e_stop="11800" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12494" stop="12481"/>
              <exon start="12365" stop="12277"/>
              <exon start="12173" stop="11800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338469" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTGATTCTTTG : ATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAA : GAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTCAAAGTTTAATATGCA</gDNA_template>
            <first_frame> P  L  I  L  * :   L  V  N  F  *  L  R  P  P  K  M  *  S  T  W  I  G  N  S  N  H  V  L  I  R  V  H  M  T   : R  V  K  K  G  S  I  D  P  K  I  A  H  M  R  L  L  T  Y  L  E  L  L  *  L  K  F  V  A  S  K  H  I  F  F  A  Q  W  K  *  R  F  S  L  L  L  I  S  S  L  I  *  N  K  N  *  S  Q  T  V  E  V  E  A  G  R  G  F  K  I  T  N  F  S  R  L  F  S  *  I  L  Y  Y  E  I  N  *  *  F  K  L  R  V  L  V  N  L  E  F  T  V  W  R  C  K  S  S  L  F  R  N  E  N  V  V  L  N  E  N  F  K  V  *  Y  A </first_frame>
            <second_frame>  H  *  F  F   : D  W  *  T  F  D  S  D  L  Q  R  C  E  A  R  G  S  E  T  Q  I  M  S  *  S  G  F  T  *  Q  :  E  *  K  K  E  A  *  I  Q  R  *  L  T  *  G  Y  *  L  I  L  N  C  S  N  S  S  L  *  L  Q  S  I  S  S  L  P  S  G  N  S  V  S  H  C  C  S  S  V  P  *  Y  R  T  K  I  E  A  R  L  *  K  *  R  R  V  E  D  L  R  S  Q  I  S  Q  D  F  F  L  K  F  C  T  M  K  S  I  S  S  L  N  F  E  C  *  L  T  W  N  L  L  F  G  D  V  K  A  H  F  L  E  M  R  M  L  F  L  M  R  T  S  K  F  N  M   </second_frame>
            <third_frame>   I  D  S  L  :  I  G  K  L  L  T  P  T  S  K  D  V  K  H  V  D  R  K  L  K  S  C  L  D  P  G  S  H  D  K :   S  K  K  R  K  H  R  S  K  D  S  S  H  E  A  T  D  L  S  *  T  A  L  T  Q  V  C  S  F  K  A  Y  L  L  C  P  V  E  I  A  F  L  I  A  A  H  Q  F  P  N  I  E  Q  K  L  K  P  D  C  R  S  R  G  G  S  R  I  *  D  H  K  F  L  K  T  F  F  L  N  F  V  L  *  N  Q  L  V  V  *  T  S  S  V  S  *  P  G  I  Y  C  L  E  M  *  K  L  T  F  *  K  *  E  C  C  S  *  *  E  L  Q  S  L  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="28425" PGL_stop="29735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28425" e_stop="28954"/>
            <exon e_start="29553" e_stop="29735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.955"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="28425" e_stop="28954" e_length="530"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28955" i_stop="29552" i_length="598"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="29553" e_stop="29735" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28425" stop="28954"/>
              <exon start="29553" stop="29735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTATATATTGTTACATTCAATTTTATTCATAGACAAAAAAAAAAGTACATTACATTTATTTACATTATATATATGTAAACTTGTTTTTTACAGAAGAAACACCAAAAAAAAAAAAAAATGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCGTCATTTTAGTGCTTCTTTTTCGCCGTACTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAG : GCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAATATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTATGTAAGAGGACTTCAAGGGGAT</gDNA_template>
            <first_frame> L  Y  I  L  L  H  S  I  L  F  I  D  K  K  K  S  T  L  H  L  F  T  L  Y  I  C  K  L  V  F  Y  R  R  N  T  K  K  K  K  K  W  N  S  K  *  L  I  N  S  P  S  C  L  S  S  S  F  *  C  F  F  F  A  V  L  N  Q  L  N  L  H  F  H  V  T  L  Q  T  Q  I  Q  V  H  I  P  S  A  T  L  R  Y  Q  S  H  K  G  *  T  T  S  F  R  V  S  L  *  M  R  K  S  Y  S  S  L  M  E  R  R  K  Y  L  D  S  V  S  P  L  M  N  G  G  R  K  G  Y  T  A  F  L  G  M  E  R  V  R  F  L  M  E  P  L  R  R  Q  L  N  S  L  R  S  F  L  L  L  L  L  L  M  K  I  S  G  I  V  *  L  R :   Q  L  E  E  R  Q  E  Q  C  T  M  Q  V  S  *  R  E  *  H  Y  G  H  Q  I  *  I  Y  S  G  T  Q  G  G  E  E  A  K  R  H  Q  G  K  T  L  *  W  W  E  N  M  E  W  L  M  *  E  D  F  K  G   </first_frame>
            <second_frame>  F  I  Y  C  Y  I  Q  F  Y  S  *  T  K  K  K  V  H  Y  I  Y  L  H  Y  I  Y  V  N  L  F  F  T  E  E  T  P  K  K  K  K  N  G  T  A  N  N  *  *  I  H  R  H  V  Y  L  R  H  F  S  A  S  F  S  P  Y  *  I  N  *  T  S  I  F  M  *  L  F  K  P  K  Y  K  F  I  S  L  L  Q  R  C  V  T  N  P  T  K  G  K  R  P  R  F  A  S  H  C  R  *  E  N  L  T  A  R  *  W  S  A  G  N  T  S  T  R  Y  L  R  L  *  M  V  V  G  R  V  T  R  H  F  *  A  W  K  G  Y  A  F  *  W  N  H  *  G  G  N  S  I  P  S  D  H  S  Y  C  F  F  F  *  *  K  S  L  V  S  Y  S  S   : G  N  W  K  R  G  K  S  S  V  Q  C  R  S  A  K  G  N  N  I  M  G  T  K  Y  K  Y  T  Q  G  P  K  V  G  K  R  P  R  D  T  R  G  R  P  Y  D  G  G  K  I  W  S  G  L  C  K  R  T  S  R  G  </second_frame>
            <third_frame>   L  Y  I  V  T  F  N  F  I  H  R  Q  K  K  K  Y  I  T  F  I  Y  I  I  Y  M  *  T  C  F  L  Q  K  K  H  Q  K  K  K  K  M  E  Q  Q  I  T  N  K  F  T  V  M  F  I  F  V  I  L  V  L  L  F  R  R  T  E  S  T  K  P  P  F  S  C  D  S  S  N  P  N  T  S  S  Y  P  F  C  N  A  A  L  P  I  P  Q  R  V  N  D  L  V  S  R  L  T  V  D  E  K  I  L  Q  L  V  N  G  A  P  E  I  P  R  L  G  I  S  A  Y  E  W  W  S  E  G  L  H  G  I  S  R  H  G  K  G  T  L  F  N  G  T  I  K  A  A  T  Q  F  P  Q  I  I  L  T  A  S  S  F  D  E  N  L  W  Y  R  I  A  Q  :  A  I  G  R  E  A  R  A  V  Y  N  A  G  Q  L  K  G  I  T  L  W  A  P  N  I  N  I  L  R  D  P  R  W  G  R  G  Q  E  T  P  G  E  D  P  M  M  V  G  K  Y  G  V  A  Y  V  R  G  L  Q  G  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28505" stop="28954"/>
                    <exon start="29553" stop="29735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCFLQKKHQKKKKMEQQITNKFTVMFIFVILVLLFRRTESTKPPFSCDSSNPNTSSYPFCNAALPIPQRVNDLVSRLTVDEKILQLVNGAPEIPRLGISAYEWWSEGLHGISRHGKGTLFNGTIKAATQFPQIILTASSFDENLWYRIAQAIGREARAVYNAGQLKGITLWAPNINILRDPRWGRGQETPGEDPMMVGKYGVAYVRGLQGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38500" PGL_stop="32277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38500" e_stop="38467"/>
            <exon e_start="32886" e_stop="32277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.618"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.618">
            <gDNA_exon_boundary e_start="38500" e_stop="38467" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38466" i_stop="32887" i_length="5580"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="32886" e_stop="32277" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38500" stop="38467"/>
              <exon start="32886" stop="32277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTGGACATGGCCACGCCCACTTTTTTGTCTTG : GATGATACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTGATACAGCAATGTTCAGAACAGAACCTTTTTCAGTTGACTGGTTGATCTTTGGGTTCTTGAAAAGCAGTTGGTTTTTGCTCA</gDNA_template>
            <first_frame> W  W  T  W  P  R  P  L  F  C  L   : G  *  Y  L  R  H  D  I  Y  *  *  N  E  N  K  L  F  I  N  S  L  V  I  F  *  T  I  I  C  H  K  P  R  V  E  L  V  S  F  C  K  Y  *  Q  I  *  L  V  T  F  H  N  *  I  L  L  A  I  I  L  I  L  T  K  K  L  R  S  G  R  S  *  R  Y  R  N  R  I  L  L  I  S  Q  K  K  E  M  F  P  F  I  D  N  *  C  T  I  S  I  S  P  S  E  V  L  T  R  L  H  I  K  R  N  L  C  I  C  P  C  F  Q  I  H  T  L  E  S  Y  Q  C  L  F  W  N  L  I  H  C  A  R  V  L  Q  K  Q  Q  H  G  V  L  T  S  H  F  S  L  V  F  H  R  N  F  N  C  Y  H  R  A  V  T  Y  F  W  S  N  V  *  Y  S  N  V  Q  N  R  T  F  F  S  *  L  V  D  L  W  V  L  E  K  Q  L  V  F  A   </first_frame>
            <second_frame>  G  G  H  G  H  A  H  F  F  V  L  :  D  D  T  *  D  M  I  F  I  D  K  M  K  T  N  Y  S  S  I  H  L  S  Y  F  K  L  L  F  V  I  N  L  E  *  N  *  F  L  S  A  N  I  S  R  F  N  *  *  P  S  I  I  K  F  Y  *  L  L  S  *  Y  *  L  K  S  L  D  L  G  D  H  R  D  T  G  I  G  Y  S  *  S  P  K  R  R  K  C  F  P  S  S  I  T  N  V  P  S  R  L  A  L  V  K  C  S  Q  G  F  T  S  N  V  T  C  V  F  A  P  A  S  K  F  T  L  L  N  P  I  N  V  F  F  G  T  S  S  T  V  L  E  C  F  R  N  N  N  T  G  C  L  P  A  I  S  P  W  F  F  T  A  T  L  T  V  I  I  A  L  L  H  T  S  G  P  T  S  D  T  A  M  F  R  T  E  P  F  S  V  D  W  L  I  F  G  F  L  K  S  S  W  F  L  L  </second_frame>
            <third_frame>   V  D  M  A  T  P  T  F  L  S  W :   M  I  L  K  T  *  Y  L  L  I  K  *  K  Q  I  I  H  Q  F  T  C  H  I  L  N  Y  Y  L  S  *  T  *  S  R  T  S  F  F  L  Q  I  L  A  D  L  T  S  N  L  P  *  L  N  F  T  S  Y  Y  L  N  T  N  *  K  A  *  I  W  E  I  I  E  I  Q  E  *  D  T  P  D  L  P  K  E  G  N  V  S  L  H  R  *  L  M  Y  H  L  D  *  P  *  *  S  A  H  K  A  S  H  Q  T  *  L  V  Y  L  P  L  L  P  N  S  H  S  *  I  L  S  M  S  F  L  E  P  H  P  L  C  *  S  A  S  E  T  T  T  R  G  A  Y  Q  P  F  L  P  G  F  S  P  Q  L  *  L  L  S  S  R  C  Y  I  L  L  V  Q  R  L  I  Q  Q  C  S  E  Q  N  L  F  Q  L  T  G  *  S  L  G  S  *  K  A  V  G  F  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32646" stop="32278"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKRRKCFPSSITNVPSRLALVKCSQGFTSNVTCVFAPASKFTLLNPINVFFGTSSTVLECFRNNNTGCLPAISPWFFTATLTVIIALLHTSGPTSDTAMFRTEPFSVDWLIFGFLKSSWFLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35229" PGL_stop="36622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35229" e_stop="35562"/>
            <exon e_start="36481" e_stop="36622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35229" e_stop="35562" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="36481" e_stop="36622" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35229" stop="35562"/>
              <exon start="36481" stop="36622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAG : GTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAGACACCAGGGGAGGACCCAATAATGACTG</gDNA_template>
            <first_frame> I  N  S  A  T  F  L  L  R  F  V  E  S  A  N  Q  I  V  K  I  L  P  N  R  T  S  N  *  C  T  C  T  R  P  C  F  S  T  H  T  R  *  E  N  I  S  T  S  *  L  S  S  C  N  T  Q  T  R  Y  S  G  V  *  V  V  V  G  I  I  A  R  R  W  F  C  R  K  R  Y  F  L  Q  W  E  Y  C  R  S  H  Q  F  S  P  S  Y  S  H  C  C  Y  F  *  *  K  S  M  V  P  H  W  S   : G  D  W  S  R  G  Q  G  S  I  Q  C  R  S  S  N  R  Y  D  I  L  G  T  K  Y  K  Y  I  *  G  S  K  M  G  K  R  S  R  D  T  R  G  G  P  N  N  D   </first_frame>
            <second_frame>  S  T  Q  P  P  F  S  C  D  S  S  N  P  Q  T  K  S  L  K  F  C  Q  T  G  L  P  I  S  V  R  V  L  D  L  V  S  R  L  T  L  D  E  K  I  S  Q  L  V  N  S  A  P  A  I  P  R  L  G  I  P  A  Y  E  W  W  S  E  S  L  H  G  V  G  S  A  G  K  G  I  F  F  N  G  S  I  A  G  A  T  S  F  P  Q  V  I  L  T  A  A  T  F  D  E  N  L  W  Y  R  I  G  Q  :  V  I  G  V  E  A  R  G  V  Y  N  A  G  Q  A  I  G  M  T  F  W  A  P  N  I  N  I  F  R  D  P  R  W  G  R  G  Q  E  T  P  G  E  D  P  I  M  T  </second_frame>
            <third_frame>   Q  L  S  H  L  S  L  A  I  R  R  I  R  K  P  N  R  *  N  F  A  K  Q  D  F  Q  L  V  Y  V  Y  *  T  L  F  L  D  S  H  S  M  R  K  Y  L  N  *  L  T  Q  L  L  Q  Y  P  D  S  V  F  R  R  M  S  G  G  R  N  H  C  T  A  L  V  L  P  E  K  V  F  S  S  M  G  V  L  P  E  P  P  V  F  P  K  L  F  S  L  L  L  L  L  M  K  I  Y  G  T  A  L  V  R :   *  L  E  *  R  P  G  E  Y  T  M  Q  V  K  Q  S  V  *  H  F  G  H  Q  I  *  I  Y  L  G  I  Q  D  G  E  E  V  K  R  H  Q  G  R  T  Q  *  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35230" stop="35562"/>
                    <exon start="36481" stop="36621"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STQPPFSCDSSNPQTKSLKFCQTGLPISVRVLDLVSRLTLDEKISQLVNSAPAIPRLGIPAYEWWSESLHGVGSAGKGIFFNGSIAGATSFPQVILTAATFDENLWYRIGQVIGVEARGVYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPIMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40014" PGL_stop="41575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40014" e_stop="40595"/>
            <exon e_start="40682" e_stop="41575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.895" e_score="0.995"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="40014" e_stop="40595" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.895">
            <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="40682" e_stop="41575" e_length="894"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40014" stop="40595"/>
              <exon start="40682" stop="41575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTGCTCCACAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG : GGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGGGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTCTTTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAAGTACTACTAGCATTAAGATGTTAAGGATGCTCACTAGTGTATCTCATTATGAATTATAGAACAAAGACGTTAACATAGACGGGGAG</gDNA_template>
            <first_frame> F  V  L  H  N  T  N  N  *  P  L  K  L  Q  E  M  A  L  S  C  S  R  I  P  A  S  C  C  L  F  P  K  R  K  P  T  P  L  L  S  S  V  I  M  P  T  M  L  I  F  F  V  G  T  M  T  V  L  P  A  N  T  S  K  F  S  R  H  W  L  V  M  Q  S  Q  F  S  T  N  R  V  A  M  R  L  T  A  R  L  L  T  L  I  K  L  S  T  L  Q  E  M  Q  I  M  L  F  *  S  W  G  W  I  K  L  K  R  G  N  N  L  I  A  M  T  *  C  S  R  G  S  K  K  I  L  S  I  V  L  L  K  L  Q  R  S  L  L  Y  W  *  F  S  Q  E  V  Q  L  I  F  L  S  R  N  I  T  L  K  *  E  A  F  C  G  L  A  I  L  V  K  L  E  E  L  L  *  L  K  S  Y  L  V  N  I  I  L  :  G  V  N  Y  L  L  L  G  I  L  K  P  L  S  K  Y  Q  *  Q  I  *  G  *  D  L  I  L  K  Q  V  T  L  E  E  H  I  D  S  T  K  V  P  K  F  T  S  L  D  M  V  L  A  T  L  L  I  P  M  D  S  T  L  P  L  Q  T  Q  S  S  *  I  N  Y  Y  L  *  R  Q  L  K  I  Q  T  Q  S  V  T  R  L  W  M  K  *  E  V  T  T  V  R  R  R  N  S  Q  L  M  L  V  L  K  T  Q  G  K  W  M  V  S  I  Q  Y  Y  F  L  *  N  R  T  K  R  E  M  E  V  L  S  N  S  *  L  D  S  K  V  *  A  *  R  Q  G  K  I  H  N  L  C  L  R  S  V  L  V  N  I  L  A  V  L  M  K  M  D  *  *  *  *  K  K  D  R  V  T  L  S  L  E  M  Q  S  I  L  S  T  S  *  Y  E  T  K  K  K  N  G  Y  K  K  L  F  L  L  F  *  I  S  Q  I  L  S  K  Y  L  *  E  W  Q  C  C  S  S  N  S  *  S  I  D  I  K  M  N  L  G  Y  Y  L  F  L  L  L  D  I  Y  F  I  F  S  S  F  F  F  K  N  S  K  S  F  I  R  N  S  S  T  T  S  I  K  M  L  R  M  L  T  S  V  S  H  Y  E  L  *  N  K  D  V  N  I  D  G  E </first_frame>
            <second_frame>  L  C  S  T  T  P  T  T  S  P  *  S  C  K  K  W  H  C  L  A  Q  E  Y  R  Q  V  A  A  S  F  Q  S  E  N  Q  L  P  C  C  H  R  S  *  C  Q  Q  C  L  Y  S  S  W  E  L  *  R  S  S  L  Q  I  H  R  N  S  Q  G  I  G  W  L  C  K  V  S  S  V  P  T  G  L  Q  C  G  *  L  H  V  C  *  H  *  S  S  C  Q  H  C  K  K  C  R  L  C  C  F  N  H  G  V  G  S  N  S  R  E  G  T  I  *  S  R  *  L  S  A  P  G  A  A  R  K  S  Y  Q  *  C  C  *  S  C  K  E  A  C  Y  I  G  D  S  L  R  R  S  S  *  Y  F  F  R  E  I  *  P  *  N  R  K  H  F  V  G  W  L  S  W  *  S  W  R  N  C  F  S  *  N  H  I  W  *  T  *  S  W :   G  *  I  T  C  Y  L  V  S  S  S  L  C  Q  N  T  N  D  R  Y  E  D  E  T  *  S  *  N  R  L  P  W  K  N  I  S  I  L  Q  R  S  Q  S  L  R  V  W  I  W  S  *  L  H  Y  L  F  L  W  I  P  L  C  H  S  K  H  N  P  V  K  S  I  I  I  C  K  D  S  *  K  F  R  L  N  P  L  H  V  C  G  *  N  R  K  *  Q  L  *  E  G  E  I  L  S  S  C  *  C  *  K  L  R  G  N  G  W  *  A  S  S  T  T  F  C  E  T  G  Q  S  A  K  W  K  S  Y  Q  T  V  S  W  I  P  K  C  K  L  E  G  R  G  K  F  T  T  C  V  *  D  Q  S  L  *  T  S  *  Q  C  *  *  R  W  I  N  D  D  R  R  R  I  A  L  P  C  R  W  R  C  R  A  S  Y  Q  H  H  D  M  K  P  K  K  K  M  V  T  K  S  Y  F  Y  Y  F  E  F  H  K  S  S  L  N  T  Y  K  S  G  N  V  A  A  A  T  A  K  V  *  I  S  R  *  I  W  A  I  I  S  F  S  C  *  I  S  I  L  F  S  L  L  F  F  S  R  T  R  K  V  L  *  E  I  Q  V  L  L  A  L  R  C  *  G  C  S  L  V  Y  L  I  M  N  Y  R  T  K  T  L  T  *  T  G   </second_frame>
            <third_frame>   C  A  P  Q  H  Q  Q  L  A  L  E  A  A  R  N  G  I  V  L  L  K  N  T  G  K  L  L  P  L  S  K  A  K  T  N  S  L  A  V  I  G  H  N  A  N  N  A  Y  I  L  R  G  N  Y  D  G  P  P  C  K  Y  I  E  I  L  K  A  L  V  G  Y  A  K  S  V  Q  Y  Q  Q  G  C  N  A  A  N  C  T  S  A  N  I  D  Q  A  V  N  I  A  R  N  A  D  Y  V  V  L  I  M  G  L  D  Q  T  Q  E  R  E  Q  F  D  R  D  D  L  V  L  P  G  Q  Q  E  N  L  I  N  S  V  A  K  A  A  K  K  P  V  I  L  V  I  L  S  G  G  P  V  D  I  S  F  A  K  Y  N  P  K  I  G  S  I  L  W  A  G  Y  P  G  E  A  G  G  I  A  L  A  E  I  I  F  G  E  H  N  P   : G  G  K  L  P  V  T  W  Y  P  Q  A  F  V  K  I  P  M  T  D  M  R  M  R  P  D  P  K  T  G  Y  P  G  R  T  Y  R  F  Y  K  G  P  K  V  Y  E  F  G  Y  G  L  S  Y  T  T  Y  S  Y  G  F  H  S  A  T  P  N  T  I  Q  L  N  Q  L  L  S  V  K  T  V  E  N  S  D  S  I  R  Y  T  F  V  D  E  I  G  S  D  N  C  E  K  A  K  F  S  A  H  V  S  V  E  N  S  G  E  M  D  G  K  H  P  V  L  L  F  V  K  Q  D  K  A  R  N  G  S  P  I  K  Q  L  V  G  F  Q  S  V  S  L  K  A  G  E  N  S  Q  L  V  F  E  I  S  P  C  E  H  L  S  S  A  N  E  D  G  L  M  M  I  E  E  G  S  R  Y  L  V  V  G  D  A  E  H  P  I  N  I  M  I  *  N  Q  K  K  K  W  L  Q  K  V  I  F  T  I  L  N  F  T  N  P  L  *  I  P  I  R  V  A  M  L  Q  Q  Q  Q  L  K  Y  R  Y  Q  D  E  F  G  L  L  S  L  S  L  A  R  Y  L  F  Y  F  L  F  F  F  F  Q  E  L  E  K  F  Y  K  K  F  K  Y  Y  *  H  *  D  V  K  D  A  H  *  C  I  S  L  *  I  I  E  Q  R  R  *  H  R  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40016" stop="40595"/>
                    <exon start="40682" stop="41271"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CAPQHQQLALEAARNGIVLLKNTGKLLPLSKAKTNSLAVIGHNANNAYILRGNYDGPPCKYIEILKALVGYAKSVQYQQGCNAANCTSANIDQAVNIARNADYVVLIMGLDQTQEREQFDRDDLVLPGQQENLINSVAKAAKKPVILVILSGGPVDISFAKYNPKIGSILWAGYPGEAGGIALAEIIFGEHNPGGKLPVTWYPQAFVKIPMTDMRMRPDPKTGYPGRTYRFYKGPKVYEFGYGLSYTTYSYGFHSATPNTIQLNQLLSVKTVENSDSIRYTFVDEIGSDNCEKAKFSAHVSVENSGEMDGKHPVLLFVKQDKARNGSPIKQLVGFQSVSLKAGENSQLVFEISPCEHLSSANEDGLMMIEEGSRYLVVGDAEHPINIMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="59844" PGL_stop="60401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59844" e_stop="60401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="59844" e_stop="60401" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59844" stop="60401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCTCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGA</gDNA_template>
            <first_frame> K  S  R  D  E  V  Y  G  W  M  H  Q  L  R  A  R  E  A  Q  L  S  Q  Q  I  A  G  L  Q  R  E  L  T  V  A  A  A  A  G  R  A  Q  G  S  V  G  V  D  P  D  V  L  M  A  R  D  Q  N  R  D  T  L  L  Q  N  L  A  A  V  V  E  N  R  D  K  I  L  V  E  M  S  R  L  L  I  L  E  S  R  F  R  G  G  N  N  F  N  M  E  E  A  R  A  S  L  E  A  S  F  A  N  E  A  E  I  V  F  T  T  V  S  S  S  G  R  K  L  F  S  R  L  T  H  G  F  D  M  V  V  I  D  E  A  A  Q  A  S  E  V  G  V  L  P  P  L  S  L  G  A  A  R  C  V  L  V  G  D  P  Q  Q  L  P  A  T  V  I  S  K  A  A  G  T  L  M  Y  S  R </first_frame>
            <second_frame>  R  V  V  M  K  F  M  G  G  C  T  S  *  E  L  V  K  L  S  C  H  S  R  *  L  A  F  K  E  N  *  Q  L  L  Q  L  L  V  V  H  R  D  L  L  E  L  T  L  M  F  L  W  L  G  T  K  I  E  I  L  Y  C  R  T  L  R  Q  W  L  R  I  E  I  K  Y  W  W  R  C  P  V  F  *  F  W  R  V  G  S  V  V  V  T  I  S  T  W  R  K  L  V  L  V  W  R  L  V  L  P  M  K  L  K  L  S  S  L  L  S  Q  V  V  G  E  N  Y  S  L  V  L  P  M  V  L  T  W  *  S  L  M  K  Q  P  R  P  V  K  *  E  S  F  L  L  F  L  L  V  Q  H  D  V  F  L  L  G  I  R  S  S  F  L  L  Q  L  S  A  K  Q  L  E  L  *  C  T  V   </second_frame>
            <third_frame>   E  S  *  *  S  L  W  V  D  A  P  V  E  S  S  *  S  S  V  V  T  A  D  S  W  P  S  K  R  T  D  S  C  C  S  C  W  S  C  T  G  I  C  W  S  *  P  *  C  S  Y  G  *  G  P  K  S  R  Y  S  I  A  E  P  C  G  S  G  *  E  *  R  *  N  T  G  G  D  V  P  S  S  D  F  G  E  *  V  P  W  W  *  Q  F  Q  H  G  G  S  S  C  *  S  G  G  *  F  C  Q  *  S  *  N  C  L  H  Y  C  L  K  *  W  E  K  I  I  L  S  S  Y  P  W  F  *  H  G  S  H  *  *  S  S  P  G  Q  *  S  R  S  P  S  S  S  F  S  W  C  S  T  M  C  S  C  W  G  S  A  A  A  S  C  Y  S  Y  Q  Q  S  S  W  N  F  D  V  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59844" stop="60401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSRDEVYGWMHQLRAREAQLSQQIAGLQRELTVAAAAGRAQGSVGVDPDVLMARDQNRDTLLQNLAAVVENRDKILVEMSRLLILESRFRGGNNFNMEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="61096" PGL_stop="61526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61096" e_stop="61526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61096" e_stop="61526" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61096" stop="61526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTCTAATAATCGAGGTTTAAGATCTGGGTTACGACATAGAATATATGATCCACACATGGAGCCCAGGTCAGGAACACCTTCAGAAGATGATGAAAAACCAAATGCATTATATGTAAGGAATGGAAGTTATAGGCCTCCTAAGCCCTCACTGGACAATTCGTTGAATGATTTTGATCAACCTGCTGATAGATCTAGAGATGCCTGGCAAAATGGTATACAGAGGAGGCAAAATACAGCTGGAATTGGGAGAAGAGACCTGTAATTGGTGTCCATGAATGTGCCACATATCAC</gDNA_template>
            <first_frame> N  S  L  V  Q  S  E  D  W  A  A  L  I  A  D  A  K  T  R  K  C  Y  M  D  M  D  T  L  P  K  D  F  L  L  P  K  A  A  S  H  A  P  P  Q  T  N  M  S  N  N  R  G  L  R  S  G  L  R  H  R  I  Y  D  P  H  M  E  P  R  S  G  T  P  S  E  D  D  E  K  P  N  A  L  Y  V  R  N  G  S  Y  R  P  P  K  P  S  L  D  N  S  L  N  D  F  D  Q  P  A  D  R  S  R  D  A  W  Q  N  G  I  Q  R  R  Q  N  T  A  G  I  G  R  R  D  L  *  L  V  S  M  N  V  P  H  I   </first_frame>
            <second_frame>  I  L  W  C  N  Q  K  I  G  L  H  *  L  L  M  P  K  P  E  N  V  T  W  T  W  I  L  C  L  R  T  S  C  Y  P  R  L  L  L  M  L  L  H  R  P  I  C  L  I  I  E  V  *  D  L  G  Y  D  I  E  Y  M  I  H  T  W  S  P  G  Q  E  H  L  Q  K  M  M  K  N  Q  M  H  Y  M  *  G  M  E  V  I  G  L  L  S  P  H  W  T  I  R  *  M  I  L  I  N  L  L  I  D  L  E  M  P  G  K  M  V  Y  R  G  G  K  I  Q  L  E  L  G  E  E  T  C  N  W  C  P  *  M  C  H  I  S  </second_frame>
            <third_frame>   F  S  G  A  I  R  R  L  G  C  I  D  C  *  C  Q  N  Q  K  M  L  H  G  H  G  Y  F  A  *  G  L  L  A  T  Q  G  C  F  S  C  S  S  T  D  Q  Y  V  *  *  S  R  F  K  I  W  V  T  T  *  N  I  *  S  T  H  G  A  Q  V  R  N  T  F  R  R  *  *  K  T  K  C  I  I  C  K  E  W  K  L  *  A  S  *  A  L  T  G  Q  F  V  E  *  F  *  S  T  C  *  *  I  *  R  C  L  A  K  W  Y  T  E  E  A  K  Y  S  W  N  W  E  K  R  P  V  I  G  V  H  E  C  A  T  Y  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61096" stop="61497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLVQSEDWAALIADAKTRKCYMDMDTLPKDFLLPKAASHAPPQTNMSNNRGLRSGLRHRIYDPHMEPRSGTPSEDDEKPNALYVRNGSYRPPKPSLDNSLNDFDQPADRSRDAWQNGIQRRQNTAGIGRRDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="66634" PGL_stop="72059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66634" e_stop="66937"/>
            <exon e_start="68488" e_stop="68522"/>
            <exon e_start="68850" e_stop="68974"/>
            <exon e_start="69047" e_stop="69142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66634" e_stop="66937" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.645">
            <gDNA_intron_boundary i_start="66938" i_stop="68487" i_length="1550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68488" e_stop="68522" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.720" acc_prob="0.809">
            <gDNA_intron_boundary i_start="68523" i_stop="68849" i_length="327"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68850" e_stop="68974" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69142" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66634" stop="66937"/>
              <exon start="68488" stop="68522"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACTTTTGAGGGACCAGAAGTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG : AATTTGCAATCCCATACAGTTGCTAATACGGGGAG : CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGC</gDNA_template>
            <first_frame> K  D  F  *  G  T  R  S  K  L  P  Y  L  F  A  G  S  D  F  D  H  F  V  L  C  R  H  Q  E  D  Y  L  Q  I  F  L  T  W  *  M  L  F  I  H  I  M  D  Y  F  P  L  Y  I  C  L  V  T  V  N  N  V  Q  *  P  F  F  F  Y  L  C  *  K  L  I  F  S  H  W  S  P  V  L  D  N  *  G  D  F  L  Q  L  Y  P  I  L  Q  I  Y  S  Y  P   : E  F  A  I  P  Y  S  C  *  Y  G  E  :  R  A  V  V  E  *  F  *  L  H  Q  *  N  S  L  K  L  *  V  L  V  *  Q  N  P  C  Q  M  A  W  R  I  L  *  N  R  K  K  N  G  T  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K   </first_frame>
            <second_frame>  K  T  F  E  G  P  E  V  N  Y  L  T  C  L  L  V  Q  I  L  T  I  L  S  F  V  V  T  K  R  T  I  F  R  F  F  S  H  G  E  C  Y  S  Y  I  *  W  I  I  F  H  Y  I  Y  V  *  S  L  *  T  M  Y  N  N  L  F  F  F  I  S  A  K  S  *  S  S  P  I  G  V  R  F  L  T  T  E  E  I  F  F  N  F  I  Q  F  F  K  F  T  V  T  Q  :  N  L  Q  S  H  T  V  A  N  T  G  S :   V  Q  W  L  N  N  F  D  Y  T  S  E  I  P  *  N  Y  E  Y  *  C  N  K  I  H  A  K  W  L  G  E  F  F  E  T  G  R  R  T  E  Q   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  </second_frame>
            <third_frame>   R  L  L  R  D  Q  K  *  I  T  L  P  V  C  W  F  R  F  *  P  F  C  P  L  S  S  P  R  G  L  S  S  D  F  S  H  M  V  N  A  I  H  T  Y  N  G  L  F  S  I  I  Y  M  F  S  H  C  K  Q  C  T  I  T  F  F  F  L  S  L  L  K  A  D  L  L  P  L  E  S  G  S  *  Q  L  R  R  F  S  S  T  L  S  N  S  S  N  L  Q  L  P  R :   I  C  N  P  I  Q  L  L  I  R  G   : A  C  S  G  *  I  I  L  I  T  P  V  K  F  P  E  T  M  S  T  S  V  T  K  S  M  P  N  G  L  E  N  S  L  K  P  E  E  E  R  N  K  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68864" stop="68974"/>
                    <exon start="69047" stop="69142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILITPVKFPETMSTSVTKSMPNGLENSLKPEEERNKIDEMRKLIGPLSGKLALYCSDASISRYLAAQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70608" e_stop="71372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="70608" e_stop="71372" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70608" stop="71372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTT</gDNA_template>
            <first_frame> L  S  *  K  L  H  D  *  R  H  G  Q  L  V  F  A  I  G  I  Y  S  Y  I  T  L  L  *  A  *  S  F  T  L  G  L  *  V  C  W  *  L  V  I  M  Q  T  G  I  S  F  D  S  L  N  *  A  Q  V  V  V  T  S  G  F  L  G  L  Q  D  I  V  C  M  S  C  I  V  C  N  Y  F  L  E  I  Q  L  S  *  D  G  *  W  I  L  V  R  T  M  A  F  P  K  D  R  N  A  E  T  L  N  E  G  *  V  S  A  V  E  N  L  I  H  V  L  R  C  M  E  L  S  K  K  N  E  D  N  V  V  N  Q  M  T  M  D  F  Y  F  H  E  I  *  T  H  *  N  R  E  T  I  K  S  *  V  R  K  E  R  H  V  R  T  E  S  G  I  L  M  K  A  S  F  T  *  S  R  K  N  *  L  D  K  D  K  R  L  S  E  E  *  *  K  Q  E  S  V  S  Y  I  L  I  T  Y  P  R  P  R  F  G  W  V  I  *  Q  P  L  E  Q  K  Y  V  P  A  L  I  L  S  I  Q  V  V  A  L  L  K  V  T  F  A  L  F  Q  *  I  P  F </first_frame>
            <second_frame>  C  H  E  N  C  M  T  D  G  M  V  N  W  C  L  Q  L  V  Y  T  P  I  S  L  F  C  R  P  S  P  L  L  W  V  Y  E  F  A  G  N  L  L  S  C  R  L  G  L  A  L  I  A  *  T  E  P  K  L  *  *  L  L  A  F  W  D  S  K  T  L  S  A  C  L  A  *  F  V  I  T  F  *  K  F  S  C  R  K  M  A  D  G  F  W  C  E  Q  W  L  S  Q  R  T  E  M  L  K  L  *  M  K  A  K  C  L  Q  *  K  T  *  F  M  Y  C  D  A  W  N  *  V  R  R  M  R  T  M  L  S  I  R  *  P  W  T  S  I  F  M  K  S  E  H  T  E  T  E  K  L  *  K  V  K  *  G  K  N  G  T  *  E  L  N  Q  G  F  *  *  K  L  V  L  L  D  Q  E  K  I  N  W  I  K  I  R  G  F  L  K  N  N  K  S  R  K  V  *  V  I  Y  *  L  L  I  L  A  Q  D  L  V  G  L  F  S  N  H  *  S  K  N  M  C  L  L  *  F  *  A  F  K  L  L  H  Y  L  R  L  H  L  L  Y  S  N  R  F  P   </second_frame>
            <third_frame>   V  M  K  I  A  *  L  T  A  W  S  I  G  V  C  N  W  Y  I  L  L  Y  H  S  S  V  G  L  V  L  Y  S  G  S  M  S  L  L  V  T  C  Y  H  A  D  W  D  *  L  *  *  P  K  L  S  P  S  C  S  D  F  W  L  S  G  T  P  R  H  C  L  H  V  L  H  S  L  *  L  L  F  R  N  S  V  V  V  R  W  L  M  D  F  G  A  N  N  G  F  P  K  G  Q  K  C  *  N  F  E  *  R  L  S  V  C  S  R  K  L  N  S  C  I  A  M  H  G  I  E  *  E  E  *  G  Q  C  C  Q  S  D  D  H  G  L  L  F  S  *  N  L  N  T  L  K  Q  R  N  Y  K  K  L  S  E  E  R  T  A  R  E  N  *  I  R  D  F  D  E  S  *  F  Y  L  I  K  K  K  L  T  G  *  R  *  E  A  F  *  R  I  I  K  A  G  K  C  E  L  Y  I  N  Y  L  S  S  P  K  I  W  L  G  Y  L  A  T  I  R  A  K  I  C  A  C  F  N  F  K  H  S  S  C  C  I  T  *  G  Y  I  C  F  I  P  I  D  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66656" e_stop="66937"/>
            <exon e_start="68850" e_stop="68974"/>
            <exon e_start="69047" e_stop="69223"/>
            <exon e_start="69665" e_stop="69763"/>
            <exon e_start="70114" e_stop="70356"/>
            <exon e_start="71474" e_stop="72059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66656" e_stop="66937" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.809">
            <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68850" e_stop="68974" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69223" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69665" e_stop="69763" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70114" e_stop="70356" e_length="243"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="71474" e_stop="72059" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66656" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="72059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG : CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG : GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG : AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG : CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</gDNA_template>
            <first_frame> V  N  Y  L  T  C  L  L  V  Q  I  L  T  I  L  S  F  V  V  T  K  R  T  I  F  R  F  F  S  H  G  E  C  Y  S  Y  I  *  W  I  I  F  H  Y  I  Y  V  *  S  L  *  T  M  Y  N  N  L  F  F  F  I  S  A  K  S  *  S  S  P  I  G  V  R  F  L  T  T  E  E  I  F  F  N  F  I  Q  F  F  K  F  T  V  T  Q  :  R  A  V  V  E  *  F  *  L  H  Q  *  N  S  L  K  L  *  V  L  V  *  Q  N  P  C  Q  M  A  W  R  I  L  *  N  R  K  K  N  G  T  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K  A  G  T  *  R  R  Q  L  R  C  L  K  R  P  *  S  G  D  W  I  S  C  L  K  K  F  A  G :   M  M  W  P  V  K  Q  K  Q  A  K  F  I  G  Q  T  I  K  T  S  M  G  G  Q  F  L  S  *  D  L  V  A  R :   T  L  S  L  *  K  D  R  *  S  I  *  Y  I  A  W  K  M  Q  L  *  I  S  Q  K  T  R  N  R  *  F  G  *  S  T  F  M  D  S  L  C  Q  T  S  Q  S  R  *  Q  K  K  Q  L  I  F  W  K  T  I  I  L  K  D  W  E  *  L  F  Y  M  I  H  P  K  Y  L  N  H  F  G  S :   *  Q  S  L  F  W  T  Q  R  L  R  A  K  S  I  L  C  T  Q  M  T  P  T  A  R  K  *  W  K  K  C  L  T  *  V  W  W  S  L  H  L  A  E  M  I  R  L  I  L  M  S  I  N  M  L  R  G  *  E  K  M  M  K  S  C  L  L  S  G  R  K  T  I  I  L  H  Q  M  H  N  L  L  *  Q  L  I  P  L  *  S  Q  Q  I  L  I  L  I  L  K  S  *  M  R  K  *  R  N  L  L  L  M  L  M  K  K  N  H  Q  L  K  K  L  C  L  E  V  T  V  Q  M  R  M  S  K  Q  C  S  *  R  Q  C  L  Q  L  F  S  F  V  N  A  H  K  M  G  N  L  T  I  S  P  N  G  S  E  L  K  C  T  *  Q  R  T  Y  *  S  R  *  C  N  E  *  Y  A  I  K  *  M  L  C  L  F  I  L  G  S </first_frame>
            <second_frame>  *  I  T  L  P  V  C  W  F  R  F  *  P  F  C  P  L  S  S  P  R  G  L  S  S  D  F  S  H  M  V  N  A  I  H  T  Y  N  G  L  F  S  I  I  Y  M  F  S  H  C  K  Q  C  T  I  T  F  F  F  L  S  L  L  K  A  D  L  L  P  L  E  S  G  S  *  Q  L  R  R  F  S  S  T  L  S  N  S  S  N  L  Q  L  P  S :   V  Q  W  L  N  N  F  D  Y  T  S  E  I  P  *  N  Y  E  Y  *  C  N  K  I  H  A  K  W  L  G  E  F  F  E  T  G  R  R  T  E  Q   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  L  E  R  K  E  G  S  *  D  A  *  S  V  P  E  V  E  T  G  F  H  A  *  R  N  S  L   : G  *  C  G  Q  *  S  R  N  R  Q  N  L  *  V  K  L  *  R  Q  A  W  E  A  S  S  C  H  E  T  S  L  P   : E  H  *  V  S  R  R  T  D  E  V  F  S  I  L  P  G  K  C  S  C  K  S  P  K  R  P  G  T  D  D  L  V  D  R  L  S  W  I  H  S  V  K  P  L  N  Q  G  D  K  R  N  S  S  Y  F  G  R  L  L  S  *  K  T  G  N  S  Y  F  I  *  S  T  Q  N  I  *  T  I  L  E   : A  S  K  A  F  F  G  P  K  D  C  E  Q  S  P  F  Y  V  L  R  *  P  Q  Q  Q  E  N  D  G  R  N  V  *  H  E  S  G  G  V  C  I  W  R  R  *  *  G  *  F  *  C  Q  *  I  C  *  E  D  E  R  R  *  *  K  V  V  F  F  L  E  E  R  R  *  F  C  I  K  C  T  T  Y  C  D  S  *  S  L  F  R  A  N  K  F  *  F  *  F  *  S  L  R  *  E  S  R  E  T  F  S  *  C  *  *  R  R  I  I  N  *  R  N  F  A  W  K  *  Q  Y  K  C  E  C  Q  S  S  V  A  K  G  N  V  F  N  F  L  V  L  *  M  L  T  R  W  A  I  *  P  F  L  Q  M  V  Q  N  *  S  V  L  S  R  E  H  I  N  Q  G  D  V  M  S  D  M  L  *  N  E  C  C  A  S  L  Y  *  V   </second_frame>
            <third_frame>   K  L  P  Y  L  F  A  G  S  D  F  D  H  F  V  L  C  R  H  Q  E  D  Y  L  Q  I  F  L  T  W  *  M  L  F  I  H  I  M  D  Y  F  P  L  Y  I  C  L  V  T  V  N  N  V  Q  *  P  F  F  F  Y  L  C  *  K  L  I  F  S  H  W  S  P  V  L  D  N  *  G  D  F  L  Q  L  Y  P  I  L  Q  I  Y  S  Y  P   : A  C  S  G  *  I  I  L  I  T  P  V  K  F  P  E  T  M  S  T  S  V  T  K  S  M  P  N  G  L  E  N  S  L  K  P  E  E  E  R  N  K  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S  W  N  V  K  K  A  A  K  M  L  K  A  S  L  K  W  R  L  D  F  M  P  E  E  I  R  W  :  D  D  V  A  S  E  A  E  T  G  K  I  Y  R  S  N  Y  K  D  K  H  G  R  P  V  L  V  M  R  P  R  C  Q  :  N  T  K  S  L  E  G  Q  M  K  Y  L  V  Y  C  L  E  N  A  V  V  N  L  P  K  D  Q  E  Q  M  I  W  L  I  D  F  H  G  F  T  L  S  N  L  S  I  K  V  T  K  E  T  A  H  I  L  E  D  Y  Y  P  E  R  L  G  I  A  I  L  Y  D  P  P  K  I  F  E  P  F  W  K  :  L  A  K  P  F  L  D  P  K  T  A  S  K  V  H  F  M  Y  S  D  D  P  N  S  K  K  M  M  E  E  M  F  D  M  S  L  V  E  S  A  F  G  G  D  D  K  A  D  F  D  V  N  K  Y  A  E  R  M  R  E  D  D  E  K  L  S  S  F  W  K  K  D  D  N  S  A  S  N  A  Q  L  T  V  T  A  D  P  S  L  E  P  T  N  S  D  S  D  S  E  V  L  D  E  K  V  E  K  P  S  L  D  V  D  E  E  E  S  S  I  E  E  T  L  P  G  S  N  S  T  N  A  N  V  K  A  V  *  L  K  A  M  S  S  T  F  *  F  C  K  C  S  Q  D  G  Q  F  N  H  F  S  K  W  F  R  T  E  V  Y  L  A  E  N  I  L  I  K  V  M  *  *  V  I  C  Y  K  M  N  V  V  P  L  Y  T  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68864" stop="68974"/>
                    <exon start="69047" stop="69223"/>
                    <exon start="69665" stop="69763"/>
                    <exon start="70114" stop="70356"/>
                    <exon start="71474" stop="71884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILITPVKFPETMSTSVTKSMPNGLENSLKPEEERNKIDEMRKLIGPLSGKLALYCSDASISRYLAAQSWNVKKAAKMLKASLKWRLDFMPEEIRWDDVASEAETGKIYRSNYKDKHGRPVLVMRPRCQNTKSLEGQMKYLVYCLENAVVNLPKDQEQMIWLIDFHGFTLSNLSIKVTKETAHILEDYYPERLGIAILYDPPKIFEPFWKLAKPFLDPKTASKVHFMYSDDPNSKKMMEEMFDMSLVESAFGGDDKADFDVNKYAERMREDDEKLSSFWKKDDNSASNAQLTVTADPSLEPTNSDSDSEVLDEKVEKPSLDVDEEESSIEETLPGSNSTNANVKAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="67653" PGL_stop="67107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67653" e_stop="67107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="67653" e_stop="67107" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67653" stop="67107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAGAGAAGCTTTGAGGAGGAAAAATGTGTTAATGCCTAACATGATTTCCTGTTCGCATTCCCAGACGGTGCAACAGGTAAATGTAAACACGGAAATATTGCAATGTCCACTTAGCTGTTAAGGAACAATATAAACCTAGATTAATGGTTTAGCTGCAAGAGATCGAAACAACATTTAAAATCTATCAAGCTCTTCTTCATTTCAACTATCAGAAAGGAACTTGTTATTGATGAAATGATAGTCATCAATCATCATCCATTAAATCAGTTCGCTCAAACACGAGTAGCAACTTTAGGTAATATTCGAAGTGCACATCCTCATTTCAGTGATTCTTATCCCCAAAAAAACAGCACTTCACTTTTTCTACCAAAACCAAGACCAAACCTTGTAATTGAAAACTTCCAATTGCACAAACTTTCCAGTAGACAGTGCAAACATCAACAAGTTACCCTCTTTAAGGGGTTTTAACATAATTTTAAGTCCAATTGTCCAAATCATCACACCACATAAGCTTATTTAGCTTGCTAACTAACTAACTCATGAT</gDNA_template>
            <first_frame> T  K  R  S  F  E  E  E  K  C  V  N  A  *  H  D  F  L  F  A  F  P  D  G  A  T  G  K  C  K  H  G  N  I  A  M  S  T  *  L  L  R  N  N  I  N  L  D  *  W  F  S  C  K  R  S  K  Q  H  L  K  S  I  K  L  F  F  I  S  T  I  R  K  E  L  V  I  D  E  M  I  V  I  N  H  H  P  L  N  Q  F  A  Q  T  R  V  A  T  L  G  N  I  R  S  A  H  P  H  F  S  D  S  Y  P  Q  K  N  S  T  S  L  F  L  P  K  P  R  P  N  L  V  I  E  N  F  Q  L  H  K  L  S  S  R  Q  C  K  H  Q  Q  V  T  L  F  K  G  F  *  H  N  F  K  S  N  C  P  N  H  H  T  T  *  A  Y  L  A  C  *  L  T  N  S  *  </first_frame>
            <second_frame>  L  R  E  A  L  R  R  K  N  V  L  M  P  N  M  I  S  C  S  H  S  Q  T  V  Q  Q  V  N  V  N  T  E  I  L  Q  C  P  L  S  C  *  G  T  I  *  T  *  I  N  G  L  A  A  R  D  R  N  N  I  *  N  L  S  S  S  S  S  F  Q  L  S  E  R  N  L  L  L  M  K  *  *  S  S  I  I  I  H  *  I  S  S  L  K  H  E  *  Q  L  *  V  I  F  E  V  H  I  L  I  S  V  I  L  I  P  K  K  T  A  L  H  F  F  Y  Q  N  Q  D  Q  T  L  *  L  K  T  S  N  C  T  N  F  P  V  D  S  A  N  I  N  K  L  P  S  L  R  G  F  N  I  I  L  S  P  I  V  Q  I  I  T  P  H  K  L  I  *  L  A  N  *  L  T  H  D </second_frame>
            <third_frame>   *  E  K  L  *  G  G  K  M  C  *  C  L  T  *  F  P  V  R  I  P  R  R  C  N  R  *  M  *  T  R  K  Y  C  N  V  H  L  A  V  K  E  Q  Y  K  P  R  L  M  V  *  L  Q  E  I  E  T  T  F  K  I  Y  Q  A  L  L  H  F  N  Y  Q  K  G  T  C  Y  *  *  N  D  S  H  Q  S  S  S  I  K  S  V  R  S  N  T  S  S  N  F  R  *  Y  S  K  C  T  S  S  F  Q  *  F  L  S  P  K  K  Q  H  F  T  F  S  T  K  T  K  T  K  P  C  N  *  K  L  P  I  A  Q  T  F  Q  *  T  V  Q  T  S  T  S  Y  P  L  *  G  V  L  T  *  F  *  V  Q  L  S  K  S  S  H  H  I  S  L  F  S  L  L  T  N  *  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67506" stop="67183"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFSCKRSKQHLKSIKLFFISTIRKELVIDEMIVINHHPLNQFAQTRVATLGNIRSAHPHFSDSYPQKNSTSLFLPKPRPNLVIENFQLHKLSSRQCKHQQVTLFKGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="73779" PGL_stop="72283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73779" e_stop="73694"/>
            <exon e_start="73608" e_stop="73507"/>
            <exon e_start="73416" e_stop="73297"/>
            <exon e_start="72722" e_stop="72669"/>
            <exon e_start="72584" e_stop="72283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.644" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73779" e_stop="73694" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.644" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73693" i_stop="73609" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73608" e_stop="73507" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.967">
            <gDNA_intron_boundary i_start="73506" i_stop="73417" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="73416" e_stop="73297" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72722" e_stop="72669" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.970">
            <gDNA_exon_boundary e_start="72584" e_stop="72283" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73779" stop="73694"/>
              <exon start="73608" stop="73507"/>
              <exon start="73416" stop="73297"/>
              <exon start="72722" stop="72669"/>
              <exon start="72584" stop="72283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73356" stop="73297"/>
              <exon start="72722" stop="72669"/>
              <exon start="72584" stop="72283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCGTCGTAGCTATGATATTCCTCCTCCGAACGGAGAAAGTTTGGAAATGTGTGCAGAGAGAGCTGTTGCCTACTTCACAGAGCAC : ATTGAACCCCAACTGGCAAGTGGAAAAAATATAATGATTGCAGCCCATGGGAACTCATTGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAG : GTTATAAGTTTGGAGCTTGCCACTGGAATCCCCATGCTTTACATATTCAAAGAAGGAAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAG : AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG : GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGGGTTTCTTTTCTCA</gDNA_template>
            <first_frame> G  V  V  A  M  I  F  L  L  R  T  E  K  V  W  K  C  V  Q  R  E  L  L  P  T  S  Q  S  T :   L  N  P  N  W  Q  V  E  K  I  *  *  L  Q  P  M  G  T  H  *  G  P  S  L  C  I  L  T  S  *  H  P  K  R :   L  *  V  W  S  L  P  L  E  S  P  C  F  T  Y  S  K  K  E  G  I  F  A  E  E  V  L  Q  P  Q  L  R  Q  Q  S  M  L  I  Q  R :   N  W  L  S  T  D  K  S  *  M  I  C  L  S  N  V  T  R :   G  L  L  S  V  E  V  D  L  I  C  L  L  K  T  S  F  S  C  K  W  E  *  F  V  F  S  F  T  V  V  F  S  *  I  G  Q  T  N  S  A  T  F  S  *  M  L  F  Y  M  C  *  Y  C  E  L  *  C  R  I  F  F  G  F  D  Q  Y  L  *  T  H  *  R  E  *  A  Y  *  C  F  C  S  S  I  Q  L  I  N  K  A  M  *  N  I  H  G  V  S  F  L  </first_frame>
            <second_frame>  A  S  *  L  *  Y  S  S  S  E  R  R  K  F  G  N  V  C  R  E  S  C  C  L  L  H  R  A   : H  *  T  P  T  G  K  W  K  K  Y  N  D  C  S  P  W  E  L  I  E  V  H  H  Y  V  S  *  Q  A  N  I  P  R   : G  Y  K  F  G  A  C  H  W  N  P  H  A  L  H  I  Q  R  R  K  V  Y  S  Q  R  K  S  S  S  P  N  *  G  N  S  L  C  L  Y  K   : E  I  G  S  V  Q  T  K  A  R  *  Y  V  *  V  T  *  Q   : G  V  C  F  Q  L  K  *  I  *  Y  A  S  *  R  L  V  S  L  A  N  G  S  D  L  F  F  R  L  L  *  S  S  H  R  *  A  K  Q  T  R  P  L  F  H  K  C  C  S  I  C  V  D  T  V  N  C  N  V  E  Y  F  L  V  L  I  S  I  C  R  H  I  K  E  N  E  P  T  S  V  F  V  H  L  Y  S  L  *  I  R  Q  C  R  I  S  T  G  F  L  F  S </second_frame>
            <third_frame>   R  R  S  Y  D  I  P  P  P  N  G  E  S  L  E  M  C  A  E  R  A  V  A  Y  F  T  E  H  :  I  E  P  Q  L  A  S  G  K  N  I  M  I  A  A  H  G  N  S  L  R  S  I  I  M  Y  L  D  K  L  T  S  Q  E  :  V  I  S  L  E  L  A  T  G  I  P  M  L  Y  I  F  K  E  G  R  Y  I  R  R  G  S  P  P  A  P  T  E  A  T  V  Y  A  Y  T  K  :  K  L  A  Q  Y  R  Q  K  L  D  D  M  F  E  *  R  D  K  :  G  F  A  F  S  *  S  R  F  D  M  P  L  E  D  *  F  L  L  Q  M  G  V  I  C  F  F  V  Y  C  S  L  L  I  D  R  P  N  K  L  G  H  F  F  I  N  V  V  L  Y  V  L  I  L  *  I  V  M  *  N  I  F  W  F  *  S  V  F  V  D  T  L  K  R  M  S  L  L  V  F  L  F  I  Y  T  A  Y  K  *  G  N  V  E  Y  P  R  G  F  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73777" stop="73694"/>
                    <exon start="73608" stop="73507"/>
                    <exon start="73416" stop="73297"/>
                    <exon start="72722" stop="72678"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRSYDIPPPNGESLEMCAERAVAYFTEHIEPQLASGKNIMIAAHGNSLRSIIMYLDKLTSQEVISLELATGIPMLYIFKEGRYIRRGSPPAPTEATVYAYTKKLAQYRQKLDDMFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="75903" PGL_stop="74371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75903" e_stop="75576"/>
            <exon e_start="75023" e_stop="74752"/>
            <exon e_start="74542" e_stop="74371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.389" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75903" e_stop="75576" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.951">
            <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75023" e_stop="74752" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.389">
            <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="74542" e_stop="74371" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75903" stop="75576"/>
              <exon start="75023" stop="74752"/>
              <exon start="74542" stop="74371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATACACACTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC : AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAA : GTGAAGCTGCTTTGATCCTGATTAGACACGGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAGGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGAT</gDNA_template>
            <first_frame> I  Y  T  L  S  W  R  N  F  F  Q  E  N  D  F  Y  *  A  S  H  H  F  P  L  L  I  L  I  C  Q  T  H  F  T  L  *  R  L  N  L  Y  T  I  *  C  M  *  C  A  I  F  F  S  A  N  F  S  *  Y  K  L  N  T  L  F  R  F  P  P  F  N  R  T  K  R  K  R  G  K  N  K  I  F  L  G  *  H  R  S  H  F  S  C  F  G  F  F  A  N  L  Q  A  S  F  G  C  I  N  K   : Q  W  L  Q  R  H  L  T  N  R  L  E  L  F  G  L  V  E  *  M  V  T  L  D  C  V  L  I  M  G  M  F  P  L  D  R  C  P  R  V  S  R  L  M  W  D  C  *  E  E  E  V  F  V  L  E  R  Q  V  L  V  *  F  K  P  L  L  L  K  L  R  C  S  M  K  L  Q  H  H  L  V  P  P  P  V  T  P  T  R  K  Q  :  V  K  L  L  *  S  *  L  D  T  V  S  L  C  G  T  K  K  T  C  S  L  V  V  *  M  C  L  *  L  I  R  A  W  K  R  P  L  K  L  G  N  E  L  V  I  Y  L  S  T  *  S  I  L  L  L  *  </first_frame>
            <second_frame>  Y  T  H  F  L  G  E  I  F  F  K  K  T  I  S  T  K  H  P  I  I  S  P  S  *  S  *  F  V  R  H  I  L  P  Y  K  D  S  I  F  I  P  F  D  A  C  N  V  P  S  S  S  P  P  T  F  L  D  I  N  S  T  P  F  F  V  F  P  H  L  T  A  P  K  E  K  G  G  K  T  R  F  F  L  D  S  I  V  P  I  F  L  A  L  V  S  S  P  T  C  K  H  R  L  A  V  *  I  S  :  N  G  C  N  D  T  *  P  I  G  W  N  S  S  V  L  *  S  K  W  *  L  W  I  V  S  *  L  W  A  C  F  L  *  T  G  V  Q  G  F  Q  G  *  C  G  I  V  E  R  R  K  F  L  F  *  K  D  K  Y  L  C  N  S  S  L  C  F  S  S  Y  G  V  R  *  S  F  S  T  I  *  C  H  H  Q  *  L  Q  Q  E  N  K :   *  S  C  F  D  P  D  *  T  R  *  V  Y  V  E  R  K  K  L  V  H  W  L  C  R  C  A  F  D  *  *  G  R  G  R  G  R  *  S  W  E  T  N  *  *  Y  T  C  R  H  D  L  Y  F  C  F  D </second_frame>
            <third_frame>   I  H  T  F  L  E  K  F  F  S  R  K  R  F  L  L  S  I  P  S  F  P  P  L  N  L  D  L  S  D  T  F  Y  P  I  K  T  Q  S  L  Y  H  L  M  H  V  M  C  H  L  L  L  R  Q  L  F  L  I  *  T  Q  H  P  F  S  F  S  P  I  *  P  H  Q  K  K  K  G  E  K  Q  D  F  S  W  I  A  S  F  P  F  F  L  L  W  F  L  R  Q  L  A  S  I  V  W  L  Y  K  *  A :   M  A  A  T  T  L  N  Q  S  V  G  T  L  R  S  C  R  V  N  G  N  S  G  L  C  P  D  Y  G  H  V  S  F  R  P  V  S  K  G  F  K  V  D  V  G  L  L  R  G  G  S  F  C  S  R  K  T  S  T  C  V  I  Q  A  S  A  S  Q  A  T  V  F  D  E  A  S  A  P  S  S  A  T  T  S  D  S  N  K  K  T   : S  E  A  A  L  I  L  I  R  H  G  E  S  M  W  N  E  K  N  L  F  T  G  C  V  D  V  P  L  T  N  K  G  V  E  E  A  V  E  A  G  K  R  I  S  N  I  P  V  D  M  I  Y  T  S  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75577" stop="75576"/>
                    <exon start="75023" stop="74752"/>
                    <exon start="74542" stop="74373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMAATTLNQSVGTLRSCRVNGNSGLCPDYGHVSFRPVSKGFKVDVGLLRGGSFCSRKTSTCVIQASASQATVFDEASAPSSATTSDSNKKTSEAALILIRHGESMWNEKNLFTGCVDVPLTNKGVEEAVEAGKRISNIPVDMIYTSAL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75821" stop="75582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVRHILPYKDSIFIPFDACNVPSSSPPTFLDINSTPFFVFPHLTAPKEKGGKTRFFLDSIVPIFLALVSSPTCKHRLAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="92103" PGL_stop="91052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92103" e_stop="91714"/>
            <exon e_start="91625" e_stop="91052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.878" e_score="0.985"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="92103" e_stop="91714" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.878">
            <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="91625" e_stop="91052" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92103" stop="91714"/>
              <exon start="91625" stop="91052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG : AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAG</gDNA_template>
            <first_frame> S  P  L  S  L  F  F  F  F  F  L  C  S  L  S  L  *  I  E  E  E  K  N  V  A  G  E  E  D  S  A  T  D  E  E  N  N  K  Y  D  R  I  H  F  R  S  Q  S  Q  *  S  *  P  *  F  F  S  *  *  L  Q  *  S  I  R  S  S  Q  S  F  F  T  C  K  H  P  A  A  T  P  R  S  T  T  F  I  D  S  S  E  N  R  F  R  Q  K  P  P  *  I  C  *  F  S  R  N  C  *  F  F  E  S  L  L  P  L  *  T  P  V  N  P  W  P  G  Y  L  H  V  Q  :  R  R  *  C  F  L  Q  S  R  V  *  T  A  A  D  E  S  R  *  E  E  G  Q  V  F  V  G  C  I  *  K  G  L  H  E  E  L  R  R  C  R  R  S  R  R  E  G  I  *  R  F  R  H  K  R  D  C  R  R  R  L  G  S  G  N  F  *  *  T  P  C  M  D  H  E  S  N  V  M  W  L  I  S  T  L  P  T  H  T  P  K  K  C  I  S  K  L  L  Y  N  M  Y  M  Y  I  H  V  V  K  S  K  I  C  M  M  N  D  D  D  D  D  I  N  I  F  L  S  L  Q  K  E  I  L  G  *  V  L  Q  G  F  S  *  *  F  V  C  S  H  F  N  Y  F  Y  *  Y  Y  V  F  N  C  F  Y  *  Y  K  I  S  K  R  N  C  R  F  F  L  K  N  P  D  Y  F  *  V  E  Y  L  F  Y  *  V  E  </first_frame>
            <second_frame>  P  H  S  H  S  S  S  S  S  S  S  V  R  S  L  C  K  S  K  K  K  K  M  L  L  G  K  R  T  R  P  P  M  K  R  T  T  S  M  T  E  F  T  L  D  L  N  L  N  N  P  D  P  N  S  S  L  S  N  Y  N  N  P  F  D  P  H  N  P  F  S  P  A  N  T  Q  Q  Q  H  L  D  Q  Q  R  L  L  T  A  A  K  T  V  S  V  R  N  R  R  K  S  A  D  F  L  E  T  A  N  F  L  K  A  C  F  L  C  K  R  R  L  I  P  G  R  D  I  Y  M  Y  R :   G  D  S  A  F  C  S  L  E  C  R  Q  Q  Q  M  N  L  D  E  K  K  D  K  C  S  L  V  A  S  R  K  D  Y  M  K  N  S  V  A  A  A  V  A  G  G  K  G  S  D  V  S  A  T  S  E  T  V  A  A  V  *  V  V  E  I  F  S  R  R  H  V  W  I  M  N  Q  T  *  C  G  *  S  V  R  Y  P  H  T  H  Q  K  N  A  Y  Q  S  C  Y  I  I  C  I  C  I  Y  M  L  L  R  V  R  S  A  *  *  M  M  M  M  M  I  *  I  Y  F  S  L  Y  K  K  K  F  W  A  E  F  C  K  V  S  V  N  N  L  Y  A  A  I  L  I  T  S  T  S  T  M  Y  S  I  V  F  I  S  I  K  S  Q  K  E  I  A  G  F  F  *  R  T  Q  I  I  F  E  L  S  T  F  F  I  E  L  K </second_frame>
            <third_frame>   P  T  L  T  L  L  L  L  L  P  L  F  A  L  S  V  N  R  R  R  K  K  C  C  W  G  R  G  L  G  H  R  *  R  E  Q  Q  V  *  Q  N  S  L  *  I  S  I  S  I  I  L  T  L  I  L  L  L  V  I  T  I  I  H  S  I  L  T  I  L  F  H  L  Q  T  P  S  S  N  T  *  I  N  N  V  Y  *  Q  Q  R  K  P  F  P  S  E  T  A  V  N  L  L  I  F  *  K  L  L  I  F  *  K  L  A  S  S  V  N  A  G  *  S  L  A  G  I  S  T  C  T   : E  E  I  V  L  F  A  V  *  S  V  D  S  S  R  *  I  *  M  R  R  R  T  S  V  R  W  L  H  L  E  R  T  T  *  R  T  P  S  L  P  P  *  P  A  G  R  D  L  T  F  P  P  Q  A  R  L  S  P  P  F  R  *  W  K  F  L  V  D  A  M  Y  G  S  *  I  K  R  D  V  V  N  Q  Y  V  T  H  T  H  T  K  K  M  H  I  K  A  A  I  *  Y  V  Y  V  Y  T  C  C  *  E  *  D  L  H  D  E  *  *  *  *  *  Y  K  Y  I  S  L  S  T  K  R  N  S  G  L  S  F  A  R  F  Q  L  I  I  C  M  Q  P  F  *  L  L  L  L  V  L  C  I  Q  L  F  L  L  V  *  N  L  K  K  K  L  Q  V  F  F  E  E  P  R  L  F  L  S  *  V  P  F  L  L  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92102" stop="91714"/>
                    <exon start="91625" stop="91442"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSHSSSSSSSVRSLCKSKKKKMLLGKRTRPPMKRTTSMTEFTLDLNLNNPDPNSSLSNYNNPFDPHNPFSPANTQQQHLDQQRLLTAAKTVSVRNRRKSADFLETANFLKACFLCKRRLIPGRDIYMYRGDSAFCSLECRQQQMNLDEKKDKCSLVASRKDYMKNSVAAAVAGGKGSDVSATSETVAAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91421" stop="91221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPCMDHESNVMWLISTLPTHTPKKCISKLLYNMYMYIHVVKSKICMMNDDDDDINIFLSLQKEILG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="98180" PGL_stop="97719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98180" e_stop="97719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="98180" e_stop="97719" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="97719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGAGTAAATTTTTTCTTCGAATATGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAATTATACCTTGAATTTTGATAGAAGAATCATATATATCCCTAAATAATTTTTAAAAAAAATTTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCATGGGTATATGTGAGCCGTTTGTATAACGATAACGGCATATATGAGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTTTATTTTTATGTTATTGATTA</gDNA_template>
            <first_frame> L  L  *  M  S  K  F  F  L  R  I  *  N  *  I  T  I  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  *  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  L  Y  L  E  F  *  *  K  N  H  I  Y  P  *  I  I  F  K  K  N  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  R  H  G  Y  M  *  A  V  C  I  T  I  T  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  E  V  Y  Q  T  L  F  P  L  F  L  C  Y  *  L </first_frame>
            <second_frame>  Y  C  R  *  V  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  N  Y  T  L  N  F  D  R  R  I  I  Y  I  P  K  *  F  L  K  K  I  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  S  F  C  N  G  M  G  I  C  E  P  F  V  *  R  *  R  H  I  *  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E  R  Y  I  R  P  F  S  L  Y  F  Y  V  I  D   </second_frame>
            <third_frame>   I  V  D  E  *  I  F  S  S  N  M  K  L  N  Y  N  T  H  K  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  I  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  I  I  P  *  I  L  I  E  E  S  Y  I  S  L  N  N  F  *  K  K  F  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  W  V  Y  V  S  R  L  Y  N  D  N  G  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  F  I  F  M  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="112886" PGL_stop="107643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112886" e_stop="112871"/>
            <exon e_start="112590" e_stop="112469"/>
            <exon e_start="112290" e_stop="112087"/>
            <exon e_start="111838" e_stop="111779"/>
            <exon e_start="110927" e_stop="110789"/>
            <exon e_start="110188" e_stop="110070"/>
            <exon e_start="108896" e_stop="108666"/>
            <exon e_start="107723" e_stop="107643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.310" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.562" e_score="0.996"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112886" e_stop="112871" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.783">
            <gDNA_intron_boundary i_start="112870" i_stop="112591" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112590" e_stop="112469" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.310">
            <gDNA_intron_boundary i_start="112468" i_stop="112291" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112290" e_stop="112087" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112086" i_stop="111839" i_length="248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111838" e_stop="111779" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111778" i_stop="110928" i_length="851"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110927" e_stop="110789" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="110788" i_stop="110189" i_length="600"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110188" e_stop="110070" e_length="119"/>
          </exon>
          <intron i_serial="6" don_prob="0.941" acc_prob="0.756">
            <gDNA_intron_boundary i_start="110069" i_stop="108897" i_length="1173"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="108896" e_stop="108666" e_length="231"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.562">
            <gDNA_intron_boundary i_start="108665" i_stop="107724" i_length="942"/>
          </intron>
          <exon e_serial="8" e_score="0.914">
            <gDNA_exon_boundary e_start="107723" e_stop="107643" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112886" stop="112871"/>
              <exon start="112590" stop="112469"/>
              <exon start="112290" stop="112087"/>
              <exon start="111838" stop="111779"/>
              <exon start="110927" stop="110789"/>
              <exon start="110188" stop="110070"/>
              <exon start="108896" stop="108666"/>
              <exon start="107723" stop="107643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTGCGGAACCAG : GTGAATTCACTCTGCGCGCCTTCTTAAATGGTCGTTTGGATCTTTCTCAAGCTGAGAATGTCGAAAAGTTAATATCAGCAAAGTCAGTGGCTGCTGCAGATGCTGCATTGGCAGGAATAGAG : GGTGGGTTTTCTTCTTTGGTCAAATCACTAAGAACTCAGTGTATGGAGTTGCTAACTGAAATTGAAGCTCGTCTTGACTTCGATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAG : ATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAA : ACTGATAGAGCAATAGTTACAAATATTGCTGGTACGACACGGGATGTTGTGGAAGCCAGTGTTTCTGTTCGTGGTGTTCCTGTTACACTTCTTGATACTGCAGGAATCAGGGAGACTGATGATATTGTGGAAAAAATTG : GTGTGGAAAGATCTGAAGCTGTTGCCAGAAATGCTGATGTCGTAATAATGACCATAAGTGCAGCAGAGGGGTGGACTCCGGAGGATACAAAGCTCCTTGAGAGAATCCAAAGGAGTCAG : TTTCAGACTGCGTCAGGATGTAGCTCTCCATTGATTCTGGTAATCAACAAAATAGACTGTGCTCCATCCGACTCTTATGAATGGGTTAATACATGTGGCTTCTCCTTCAACAAGCACATTCCAACATGTGCTGTCAACGGTCAAGGGATTCAAGATCTTGAGGCAGCAATAATAGAAATTATGGGTCTCAATAAGATCCCTGTCGGTGGTCGCAGATGGACAGTCAACCAG : AGACAATGTGAGCAGCTTATTCGAACAAAGGAGGCTTTCATGAGGTTGAAATCGTCAATTGAGGAAGATATGCCCTTTGAT</gDNA_template>
            <first_frame> K  L  A  E  P   : G  E  F  T  L  R  A  F  L  N  G  R  L  D  L  S  Q  A  E  N  V  E  K  L  I  S  A  K  S  V  A  A  A  D  A  A  L  A  G  I  E  :  G  G  F  S  S  L  V  K  S  L  R  T  Q  C  M  E  L  L  T  E  I  E  A  R  L  D  F  D  D  E  M  P  P  L  D  L  N  L  I  M  D  K  I  Y  G  M  L  H  D  L  D  N  A  L  E  T  A  N  Y  D  K  L  L  Q  S  G  L  Q  :  I  A  I  I  G  R  P  N  V  G  K  S  S  L  L  N  A  W  S  K  :  T  D  R  A  I  V  T  N  I  A  G  T  T  R  D  V  V  E  A  S  V  S  V  R  G  V  P  V  T  L  L  D  T  A  G  I  R  E  T  D  D  I  V  E  K  I   : G  V  E  R  S  E  A  V  A  R  N  A  D  V  V  I  M  T  I  S  A  A  E  G  W  T  P  E  D  T  K  L  L  E  R  I  Q  R  S  Q  :  F  Q  T  A  S  G  C  S  S  P  L  I  L  V  I  N  K  I  D  C  A  P  S  D  S  Y  E  W  V  N  T  C  G  F  S  F  N  K  H  I  P  T  C  A  V  N  G  Q  G  I  Q  D  L  E  A  A  I  I  E  I  M  G  L  N  K  I  P  V  G  G  R  R  W  T  V  N  Q  :  R  Q  C  E  Q  L  I  R  T  K  E  A  F  M  R  L  K  S  S  I  E  E  D  M  P  F  D </first_frame>
            <second_frame>  S  L  R  N  Q  :  V  N  S  L  C  A  P  S  *  M  V  V  W  I  F  L  K  L  R  M  S  K  S  *  Y  Q  Q  S  Q  W  L  L  Q  M  L  H  W  Q  E  *  R :   V  G  F  L  L  W  S  N  H  *  E  L  S  V  W  S  C  *  L  K  L  K  L  V  L  T  S  M  T  R  C  H  P  L  I  *  I  L  L  W  T  K  Y  M  G  C  C  M  I  W  I  M  R  W  K  L  P  T  M  T  S  F  C  S  Q  D  Y  R :   L  Q  L  L  V  D  L  M  L  G  N  Q  A  F  L  M  H  G  A  K :   L  I  E  Q  *  L  Q  I  L  L  V  R  H  G  M  L  W  K  P  V  F  L  F  V  V  F  L  L  H  F  L  I  L  Q  E  S  G  R  L  M  I  L  W  K  K  L  :  V  W  K  D  L  K  L  L  P  E  M  L  M  S  *  *  *  P  *  V  Q  Q  R  G  G  L  R  R  I  Q  S  S  L  R  E  S  K  G  V  S :   F  R  L  R  Q  D  V  A  L  H  *  F  W  *  S  T  K  *  T  V  L  H  P  T  L  M  N  G  L  I  H  V  A  S  P  S  T  S  T  F  Q  H  V  L  S  T  V  K  G  F  K  I  L  R  Q  Q  *  *  K  L  W  V  S  I  R  S  L  S  V  V  A  D  G  Q  S  T  R :   D  N  V  S  S  L  F  E  Q  R  R  L  S  *  G  *  N  R  Q  L  R  K  I  C  P  L   </second_frame>
            <third_frame>   A  C  G  T  R :   *  I  H  S  A  R  L  L  K  W  S  F  G  S  F  S  S  *  E  C  R  K  V  N  I  S  K  V  S  G  C  C  R  C  C  I  G  R  N  R   : G  W  V  F  F  F  G  Q  I  T  K  N  S  V  Y  G  V  A  N  *  N  *  S  S  S  *  L  R  *  R  D  A  T  P  *  S  E  S  Y  Y  G  Q  N  I  W  D  A  A  *  S  G  *  C  A  G  N  C  Q  L  *  Q  A  S  A  V  R  T  T   : D  C  N  Y  W  S  T  *  C  W  E  I  K  P  S  *  C  M  E  Q   : N  *  *  S  N  S  Y  K  Y  C  W  Y  D  T  G  C  C  G  S  Q  C  F  C  S  W  C  S  C  Y  T  S  *  Y  C  R  N  Q  G  D  *  *  Y  C  G  K  N  W :   C  G  K  I  *  S  C  C  Q  K  C  *  C  R  N  N  D  H  K  C  S  R  G  V  D  S  G  G  Y  K  A  P  *  E  N  P  K  E  S   : V  S  D  C  V  R  M  *  L  S  I  D  S  G  N  Q  Q  N  R  L  C  S  I  R  L  L  *  M  G  *  Y  M  W  L  L  L  Q  Q  A  H  S  N  M  C  C  Q  R  S  R  D  S  R  S  *  G  S  N  N  R  N  Y  G  S  Q  *  D  P  C  R  W  S  Q  M  D  S  Q  P   : E  T  M  *  A  A  Y  S  N  K  G  G  F  H  E  V  E  I  V  N  *  G  R  Y  A  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112886" stop="112871"/>
                    <exon start="112590" stop="112469"/>
                    <exon start="112290" stop="112087"/>
                    <exon start="111838" stop="111779"/>
                    <exon start="110927" stop="110789"/>
                    <exon start="110188" stop="110070"/>
                    <exon start="108896" stop="108666"/>
                    <exon start="107723" stop="107643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLAEPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIEGGFSSLVKSLRTQCMELLTEIEARLDFDDEMPPLDLNLIMDKIYGMLHDLDNALETANYDKLLQSGLQIAIIGRPNVGKSSLLNAWSKTDRAIVTNIAGTTRDVVEASVSVRGVPVTLLDTAGIRETDDIVEKIGVERSEAVARNADVVIMTISAAEGWTPEDTKLLERIQRSQFQTASGCSSPLILVINKIDCAPSDSYEWVNTCGFSFNKHIPTCAVNGQGIQDLEAAIIEIMGLNKIPVGGRRWTVNQRQCEQLIRTKEAFMRLKSSIEEDMPFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109861" e_stop="108978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109861" e_stop="108978" e_length="884"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109861" stop="108978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAATTATTGTTAGACAGCTG</gDNA_template>
            <first_frame> C  S  I  L  C  N  Q  *  R  A  K  V  I  I  S  K  L  E  T  T  S  A  F  L  N  L  R  V  T  *  R  G  P  M  E  N  G  S  R  Y  S  *  R  *  F  P  S  S  V  F  E  S  L  Q  V  D  I  A  F  *  S  F  N  L  L  *  E  I  L  K  L  D  D  L  E  V  F  C  Y  V  Q  I  *  A  R  S  V  Y  Y  N  A  M  S  S  R  N  K  K  D  A  R  C  L  I  L  N  L  I  K  K  Y  L  T  L  L  N  N  K  L  K  K  K  W  N  *  E  E  E  T  K  E  D  F  T  I  F  L  N  Y  *  G  A  L  P  K  M  K  G  D  R  R  A  E  *  N  *  G  F  *  L  H  L  K  L  I  S  K  E  K  T  E  R  T  V  K  C  S  Y  *  M  A  F  V  L  Y  M  L  V  L  N  N  I  Q  V  S  A  L  S  P  H  L  K  *  G  P  R  K  M  R  H  L  S  T  Y  L  Y  S  T  W  T  H  V  C  K  K  D  Q  G  Y  *  R  N  L  C  C  K  T  C  S  D  *  F  K  I  C  F  F  E  V  R  S  L  *  F  V  S  R  E  F  H  L  S  S  *  K  N  L  Y  I  L  L  Y  H  *  T  C  R  R  K  S  P  *  L  L  S  F  C  F  Q  L  L  L  D  S   </first_frame>
            <second_frame>  A  L  Y  Y  A  T  N  E  E  P  K  L  S  S  V  S  W  R  L  L  V  P  S  *  T  *  E  S  P  K  E  G  P  W  R  M  G  V  G  T  V  K  D  S  S  P  V  Q  C  L  S  R  C  K  W  I  L  H  F  E  V  S  I  Y  Y  K  K  Y  *  N  L  M  I  W  R  Y  S  V  M  F  K  F  K  Q  E  V  C  T  I  M  R  C  L  Q  G  I  R  K  M  Q  G  V  L  F  *  T  *  *  K  S  I  L  H  C  *  I  T  N  *  K  R  N  G  I  E  R  R  R  L  R  K  I  S  L  S  F  *  I  I  R  E  L  C  Q  R  *  R  E  I  E  E  L  N  K  I  R  V  S  S  F  I  *  S  *  Y  L  K  K  R  P  K  E  Q  L  S  A  H  I  E  W  P  L  Y  F  I  C  *  F  L  I  T  Y  K  F  P  L  C  P  H  T  *  N  K  G  L  G  K  *  D  T  F  P  R  I  C  I  Q  L  G  P  M  Y  V  R  K  T  K  A  I  D  G  I  Y  V  A  K  L  V  L  I  D  L  R  F  A  F  L  K  *  E  V  C  D  L  C  L  E  N  S  I  F  L  H  E  K  I  Y  I  F  S  F  I  I  E  L  V  E  E  S  H  H  N  Y  L  A  F  V  F  N  Y  C  *  T  A  </second_frame>
            <third_frame>   L  Y  I  M  Q  P  M  K  S  Q  S  Y  H  Q  *  A  G  D  Y  *  C  L  L  K  L  K  S  H  L  K  R  A  H  G  E  W  E  *  V  Q  L  K  I  V  P  Q  F  S  V  *  V  A  A  S  G  Y  C  I  L  K  F  Q  S  I  I  R  N  T  E  T  *  *  S  G  G  I  L  L  C  S  N  L  S  K  K  C  V  L  *  C  D  V  F  K  E  *  E  R  C  K  V  S  Y  S  E  L  N  K  K  V  S  Y  I  V  E  *  Q  I  K  K  E  M  E  L  R  G  G  D  *  G  R  F  H  Y  L  F  K  L  L  G  S  F  A  K  D  E  G  R  *  K  S  *  I  K  L  G  F  L  A  S  S  E  A  D  I  *  R  K  D  R  K  N  S  *  V  L  I  L  N  G  L  C  T  L  Y  A  S  S  *  *  H  T  S  F  R  S  V  P  T  P  E  I  R  A  *  E  N  E  T  P  F  H  V  F  V  F  N  L  D  P  C  M  *  E  R  P  R  L  L  T  E  S  M  L  Q  N  L  F  *  L  I  *  D  L  L  F  *  S  K  K  F  V  I  C  V  *  R  I  P  S  F  F  M  K  K  F  I  Y  S  P  L  S  L  N  L  *  K  K  V  T  I  I  T  *  L  L  F  S  I  I  V  R  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 62832 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2856 bytes was the average size of a spliced alignment
$ 23672 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1578 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 17:36:54
-->
