<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 11:40:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394554" ref_strand="+" ref_description="SGN-E394554 [TUS-14-H7]">
      <seq>ttaatggtgcacttattatacgtccagcaaataaaactaattatccttttcctagacctactgctgaaattcccatcatattaggggagtggtggaaaagtgatgtacaagcagttgtgaatgagtttcttacaagtggagcagatgcaaataaatctgatgcatttcttataaatggtcaaccaggagatttatatccttgctcaacaaatgacacattcaaactaacggtggagaaaaataagacatatttgctcagaattgttaacgccgtaatgaataatctcatgtttttctccgttgcaaatcaccaactcaccgtcgtaggaactgacggtgcgtacgttaaaccgttcaagtcaaattacatcacaatttccccgggtgaaactattgatgttttactcgaagcaaatcaaaaccctaaccactattatatgggcgcgaaagcctacaatagcgtagtcggagttgattttaacaacataaccaccaccgccatcgttcagtatcgtggaaattactccacttcatcaccacccatcctccccgatctcccgaatttcgacgatacgaacgcatcgtttaatttcactaggtcattaaaaagcctagccgataaaggacaccctattgacgtaccattaaacgttacaaccaatttattgttcacattttcggtaaataccttaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="8730" stop="10658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9030" g_stop="9113" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9114" i_stop="9194" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9195" g_stop="9323" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="213" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9324" i_stop="9874" i_length="551">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9875" g_stop="10358" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="697" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E394554" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9030" e_stop="9113"/>
          <exon e_start="9195" e_stop="9323"/>
          <exon e_start="9875" e_stop="10358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAGGTATGTATTATTAATATACTCGTTCCGTTTTAATTTGTTTTGATTGGTATCGAAATTTTTAAAATTATTATTAAATTGTAGGGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATGGTAAAACAAATACTATTAATTAATTTTAATTACACTAATCTTTGTACAAATCTATATGTTATATTTCCTTTGGCAACGTTCAATTGTCATGTTGTGCTTTTCGAATTTGACTGTTACATTTACTGAATTACTTCTTTATAAAAATATAAAGTTTGAGCAAAAGCTACTGAGTTTACGTGAATCTATAACTAGAAGGCTAGATTTGTCTCTAAAATAATTTATAACCACTACTTATGCTAAAAATTTCAACTTTTTTTTTTTAACTTTCTTAAATTTTATATCAATTATAAATCTCGTCAGGTATATTGAGATAAAAGGGGTGTTACTTTTCAAAGCTTAACCGCGTTAGCATAATTCAAAAGGAGAAATGATAAAAGTCATAATAATATTCAAACATATGTACTTTATTGTAAAATTCAAACTAGTCAATGGATTATATATGATTTTATTTTTTCATTTTTCTCACGTAATATATAGTTTTGATGATGCAAATTATGTTGAAAAATCATTTATGAACATAACTAATTTTTTCTTTTTTTTCTTTTCAACAGACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCACTTCATCACCACCCATCCTCCCCGATCTCCCGAATTTCGACGATACGAACGCATCGTTTAATTTCACTAGGTCATTAAAAAGCCTAGCCGATAAAGGACACCCTATTGACGTACCATTAAACGTTACAACCAATTTATTGTTCACATTTTCCGTAAATACCTTACCTTG</genome_strand>
        <mrna_strand>TTAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAG.................................................................................GGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCACTTCATCACCACCCATCCTCCCCGATCTCCCGAATTTCGACGATACGAACGCATCGTTTAATTTCACTAGGTCATTAAAAAGCCTAGCCGATAAAGGACACCCTATTGACGTACCATTAAACGTTACAACCAATTTATTGTTCACATTTTCGGTAAATACCTTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202390" ref_strand="+" ref_description="SGN-E202390 [cLEC-6-L6]">
      <seq>taatggtgcacttattatacgtccagcaaataaaactaattatccttttcctagacctactgctgaaattcccatcatattaggggagtggtggaaaagtgatgtacaagcagttgtgaatgagtttcttacaagtggagcagatgcaaataaatctgatgcatttcttataaatggtcaaccaggagatttatatccttgctcaacaaatgacacattcaaactaacggtggagaaaaataagacatatttgctcagaattgttaacgccgtaatgaataatctcatgtttttctccgttgcaaatcaccaactcaccgtcgtaggaactgacggtgcgtacgttaaaccgttcaagtcaaattacatcacaatttccccgggtgaaactattgatgttttactcgaagcaaatcaaaaccctaaccactattatatgggcgcgaaagcctacaatagcgtagtcggagttgattttaacaacataaccaccaccgncatcgttcagtatcgtggaaattactccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="8731" stop="10490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9031" g_stop="9113" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9114" i_stop="9194" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9195" g_stop="9323" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="212" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9324" i_stop="9874" i_length="551">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9875" g_stop="10190" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="528" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E202390" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9031" e_stop="9113"/>
          <exon e_start="9195" e_stop="9323"/>
          <exon e_start="9875" e_stop="10190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAGGTATGTATTATTAATATACTCGTTCCGTTTTAATTTGTTTTGATTGGTATCGAAATTTTTAAAATTATTATTAAATTGTAGGGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATGGTAAAACAAATACTATTAATTAATTTTAATTACACTAATCTTTGTACAAATCTATATGTTATATTTCCTTTGGCAACGTTCAATTGTCATGTTGTGCTTTTCGAATTTGACTGTTACATTTACTGAATTACTTCTTTATAAAAATATAAAGTTTGAGCAAAAGCTACTGAGTTTACGTGAATCTATAACTAGAAGGCTAGATTTGTCTCTAAAATAATTTATAACCACTACTTATGCTAAAAATTTCAACTTTTTTTTTTTAACTTTCTTAAATTTTATATCAATTATAAATCTCGTCAGGTATATTGAGATAAAAGGGGTGTTACTTTTCAAAGCTTAACCGCGTTAGCATAATTCAAAAGGAGAAATGATAAAAGTCATAATAATATTCAAACATATGTACTTTATTGTAAAATTCAAACTAGTCAATGGATTATATATGATTTTATTTTTTCATTTTTCTCACGTAATATATAGTTTTGATGATGCAAATTATGTTGAAAAATCATTTATGAACATAACTAATTTTTTCTTTTTTTTCTTTTCAACAGACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCAC</genome_strand>
        <mrna_strand>TAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAG.................................................................................GGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGNCATCGTTCAGTATCGTGGAAATTACTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394553" ref_strand="+" ref_description="SGN-E394553 [TUS-14-H7](-)">
      <seq>aaatattcaaggggtttatcgagatgaatttcctagttttccgcctttaaattttaattttacgggtgattctctacccgtggaattacaacgtcccgatcgtagaacggaggttcatgttcttgaatatggaacacatgtagagattgtgttacaaggaactagtttattaggtggagttgatcatccaattcatttacatggatatagtttttatgttgttggatctggatttggaaattttgacaaagataaagaccctttgaattataatcttgttgatccacctcttcagaatactattgctgttgttagaaatggatgggctgccattaggttcaaagctgataatccaggagtatggtttatgcattgtcatttagaacgtcacgtaagttggggaatggaaatggcatttattgtgaaagatggaaaaggctcagaagaaaaattgcttcctcctcctcctgatatgcctcaatgttgaatttaaatatacctcacatttaactataatttatttttaatttttggaacatactctaacgaggggagaaagaaaaaatgtatttgcttattgattttattaattcattactatgatatatatagcttggatatatatatttgtatttgctcttctttttttttatgtaataaaattcatattttatatagcttattggagctatatttaatcatgataataataatgtaaatcttgttttaagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="10164" stop="12235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10464" g_stop="10819" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11558" g_stop="11931" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="730" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="744"/>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E394553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10464" e_stop="10819"/>
          <exon e_start="11558" e_stop="11931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTCAAGGGGTTTATCGAGATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAGGTATATTTTTTAATTGATCATGTATATTCTTTGTATGCATTGTTATATATATATGTTACTATACTTAAAAAGGTGTCAAAGTAGGTGTGCTTGACGAGATCTGACTAGTTAATTTGATACGAGTTAATAAATGAACAAATTATTAACTCGTACAGAAGTTAATTATGTGAGTTGAGATAGTTGGATTAAAACGGACTTCATAACGAGTCATTATCCAAATCGGTCTAACTTTTACCAAGTTTTAGTTTTGATTTATTTGTTCTTTAGTATGTATGTTTTTTAATTACCAAACAAAAACAATGATAAGGTCTCTCATTGGTTAAATAAAATAGACTAAGTTAATGATAGATACGTTGAACTCGTATCATCATATTTTTATGAGCTAATTTTAATAAGCAGGCACTTTATTTGTGCTTTAACATGTTGGTCTAGTCAAAACAAAGACATTTTATCAATGTGAAATTTGTTTTACAACTAAATCACAATTTTTTTTTTATACATAAATTGTTATTTTTAGAGGTTAAACTCAGCTTTATTTTATATTATATTATTATTAGATATAAATATATCATGCATGTATTCTTGTAAACCCTCAAAACATGGTAAATAACTTATTACAATATGATCAAGTAAAATAATTATATAATATTTACTGTATTAAATTAAATTAAATTATGTCATTAATATATATAGTTCGAATTCTTATTTAATAATATGTATTTTTTTTTAATATAACAGGAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATAGCTTATTGGAGCTATATTTAATCATGATAATAATAATGTAAATCTTGTTTTAA</genome_strand>
        <mrna_strand>AAATATTCAAGGGGTTTATCGAGATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATAGCTTATTGGAGCTATATTTAATCATGATAATAATAATGTAAATCTTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207661" ref_strand="+" ref_description="SGN-E207661 [cLEC-32-N5]">
      <seq>atattcatggggtttatcgagtatgaatttcctagttttccgcctttaaattttaattttacgggtgattctctacccgtggaattacaacgtcccgatcgtagaacggaggttcatgttcttgaatatggaacacatgtagagattgtgttacaaggaactagtttattaggtggagttgatcatccaattcatttacatggatatagtttttatgttgttggatctggatttggaaattttgacaaagataaagaccctttgaattataatcttgttgatccacctcttcagaatactattgctgttgttagaaatggatgggctgccattaggttcaaagctgataatccaggagtatggtttatgcattgtcatttagaacgtcacgtaagttggggaatggaaatggcatttattgtgaaagatggaaaaggctcaaaagaaaaattgcttcctcctcctcctgatatgcctcaatgttgaatttaaatatacctcacatttaactataatttatttttaatttttggaacatactctaacgaggggagaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="10166" stop="12064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10466" g_stop="10819" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11558" g_stop="11764" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="562" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E207661" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10466" e_stop="10819"/>
          <exon e_start="11558" e_stop="11764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCAAGGGGTTTATCGAG-ATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAGGTATATTTTTTAATTGATCATGTATATTCTTTGTATGCATTGTTATATATATATGTTACTATACTTAAAAAGGTGTCAAAGTAGGTGTGCTTGACGAGATCTGACTAGTTAATTTGATACGAGTTAATAAATGAACAAATTATTAACTCGTACAGAAGTTAATTATGTGAGTTGAGATAGTTGGATTAAAACGGACTTCATAACGAGTCATTATCCAAATCGGTCTAACTTTTACCAAGTTTTAGTTTTGATTTATTTGTTCTTTAGTATGTATGTTTTTTAATTACCAAACAAAAACAATGATAAGGTCTCTCATTGGTTAAATAAAATAGACTAAGTTAATGATAGATACGTTGAACTCGTATCATCATATTTTTATGAGCTAATTTTAATAAGCAGGCACTTTATTTGTGCTTTAACATGTTGGTCTAGTCAAAACAAAGACATTTTATCAATGTGAAATTTGTTTTACAACTAAATCACAATTTTTTTTTTATACATAAATTGTTATTTTTAGAGGTTAAACTCAGCTTTATTTTATATTATATTATTATTAGATATAAATATATCATGCATGTATTCTTGTAAACCCTCAAAACATGGTAAATAACTTATTACAATATGATCAAGTAAAATAATTATATAATATTTACTGTATTAAATTAAATTAAATTATGTCATTAATATATATAGTTCGAATTCTTATTTAATAATATGTATTTTTTTTTAATATAACAGGAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAA</genome_strand>
        <mrna_strand>ATATTCATGGGGTTTATCGAGTATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAAAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403605" ref_strand="+" ref_description="SGN-E403605 [PPC-11-K15]">
      <seq>tgatcatccaattcatttacatggatatagtttttatgttgttggagctggatttggaaattttgacaaagataaagaccctttgaactataatcttgttgatccacctcttcagaatactattgctgttgttagaaatggatgggctgccatcaggttcaaagctgataatccaggagtatggtttatgcattgtcatttagaacgtcacgtaagttggggaatggaaatggcattcattgtgaaagatggaaaaggctctcaagagaaattgcttcctccccctcctgatatgcccctgtgttgaatttaaatatacctcacatttaactataatttatttttaattttggaacatactctaatgaggggagaaagaaaaaatgtatttgcttattgattttattaattcgttacgatgacatatatagcttggatataaatatttatgtctctgtttttcttatatgtaataaaattgatattttatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="10344" stop="12178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10644" g_stop="10819" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11558" g_stop="11878" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="493" r_length="317" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="503"/>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E403605" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10644" e_stop="10819"/>
          <exon e_start="11558" e_stop="11878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAGGTATATTTTTTAATTGATCATGTATATTCTTTGTATGCATTGTTATATATATATGTTACTATACTTAAAAAGGTGTCAAAGTAGGTGTGCTTGACGAGATCTGACTAGTTAATTTGATACGAGTTAATAAATGAACAAATTATTAACTCGTACAGAAGTTAATTATGTGAGTTGAGATAGTTGGATTAAAACGGACTTCATAACGAGTCATTATCCAAATCGGTCTAACTTTTACCAAGTTTTAGTTTTGATTTATTTGTTCTTTAGTATGTATGTTTTTTAATTACCAAACAAAAACAATGATAAGGTCTCTCATTGGTTAAATAAAATAGACTAAGTTAATGATAGATACGTTGAACTCGTATCATCATATTTTTATGAGCTAATTTTAATAAGCAGGCACTTTATTTGTGCTTTAACATGTTGGTCTAGTCAAAACAAAGACATTTTATCAATGTGAAATTTGTTTTACAACTAAATCACAATTTTTTTTTTATACATAAATTGTTATTTTTAGAGGTTAAACTCAGCTTTATTTTATATTATATTATTATTAGATATAAATATATCATGCATGTATTCTTGTAAACCCTCAAAACATGGTAAATAACTTATTACAATATGATCAAGTAAAATAATTATATAATATTTACTGTATTAAATTAAATTAAATTATGTCATTAATATATATAGTTCGAATTCTTATTTAATAATATGTATTTTTTTTTAATATAACAGGAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATA</genome_strand>
        <mrna_strand>TGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGAGCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAACTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATCAGGTTCAAAGCTGATAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTCATTGTGAAAGATGGAAAAGGCTCTCAAGAGAAATTGCTTCCTCCCCCTCCTGATATGCCCCTGTGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAA-TTTTGGAACATACTCTAATGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCGTTACGATGACATATATAGCTTGGATATAAATA-TT-TATGT-CTCTGTTTTTCTTATATGTAATAAAATTGATATTTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433590" ref_strand="+" ref_description="SGN-E433590 [STM-58-P13]">
      <seq>tgatcatccaattcatttacatggatatagtttttatgttgttggagctggatttggaaattttgacaaagataaagaccctttgaactataatcttgttgatccacctcttcagaatactattgctgttgttagaaatggatgggctgccatcaggttcaaagctgataatccaggagtatggtttatgcattgtcatttagaacgtcacgtaagttggggaatggaaatggcattcattgtgaaagatggaaaaggctctcaagagaaattgcttcctccccctcctgatatgcccctgtgttgaatttaaatatacctcacatttaactataatttatttttaattttggaacatactctaatgaggggagaaagaaaaaatgtatttgcttattgattttattaattcgttacgatgacatatatagcttggatataaatatttatgtctctgtttttcttatatgtaataaaattgatattttatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="10344" stop="12178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10644" g_stop="10819" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11558" g_stop="11878" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="493" r_length="317" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="503"/>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E433590" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10644" e_stop="10819"/>
          <exon e_start="11558" e_stop="11878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAGGTATATTTTTTAATTGATCATGTATATTCTTTGTATGCATTGTTATATATATATGTTACTATACTTAAAAAGGTGTCAAAGTAGGTGTGCTTGACGAGATCTGACTAGTTAATTTGATACGAGTTAATAAATGAACAAATTATTAACTCGTACAGAAGTTAATTATGTGAGTTGAGATAGTTGGATTAAAACGGACTTCATAACGAGTCATTATCCAAATCGGTCTAACTTTTACCAAGTTTTAGTTTTGATTTATTTGTTCTTTAGTATGTATGTTTTTTAATTACCAAACAAAAACAATGATAAGGTCTCTCATTGGTTAAATAAAATAGACTAAGTTAATGATAGATACGTTGAACTCGTATCATCATATTTTTATGAGCTAATTTTAATAAGCAGGCACTTTATTTGTGCTTTAACATGTTGGTCTAGTCAAAACAAAGACATTTTATCAATGTGAAATTTGTTTTACAACTAAATCACAATTTTTTTTTTATACATAAATTGTTATTTTTAGAGGTTAAACTCAGCTTTATTTTATATTATATTATTATTAGATATAAATATATCATGCATGTATTCTTGTAAACCCTCAAAACATGGTAAATAACTTATTACAATATGATCAAGTAAAATAATTATATAATATTTACTGTATTAAATTAAATTAAATTATGTCATTAATATATATAGTTCGAATTCTTATTTAATAATATGTATTTTTTTTTAATATAACAGGAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATA</genome_strand>
        <mrna_strand>TGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGAGCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAACTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATCAGGTTCAAAGCTGATAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTCATTGTGAAAGATGGAAAAGGCTCTCAAGAGAAATTGCTTCCTCCCCCTCCTGATATGCCCCTGTGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAA-TTTTGGAACATACTCTAATGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCGTTACGATGACATATATAGCTTGGATATAAATA-TT-TATGT-CTCTGTTTTTCTTATATGTAATAAAATTGATATTTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433591" ref_strand="-" ref_description="SGN-E433591 [STM-58-P13]">
      <seq>tgatcatccaattcatttacatggatatagtttttatgttgttggagctggatttggaaattttgacaaagataaagaccctttgaactataatcttgttgatccacctcttcagaatactattgctgttgttagaaatggatgggctgccatcaggttcaaagctgataatccaggagtatggtttatgcattgtcatttagaacgtcacgtaagttggggaatggaaatggcattcattgtgaaagatggaaaaggctctcaagagaaattgcttcctccccctcctgatatgcccctgtgttgaatttaaatatacctcacatttaactataatttatttttaattttggaacatactctaatgaggggagaaagaaaaaatgtatttgcttattgattttattaattcgttacgatgacatatatagcttggatataaatatttatgtctctgtttttcttatatggagaaaaattgatattttatcccaaatatgaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="10344" stop="12175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10644" g_stop="10819" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11558" g_stop="11875" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="490" r_length="314" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E433591" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10644" e_stop="10819"/>
          <exon e_start="11558" e_stop="11875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAGGTATATTTTTTAATTGATCATGTATATTCTTTGTATGCATTGTTATATATATATGTTACTATACTTAAAAAGGTGTCAAAGTAGGTGTGCTTGACGAGATCTGACTAGTTAATTTGATACGAGTTAATAAATGAACAAATTATTAACTCGTACAGAAGTTAATTATGTGAGTTGAGATAGTTGGATTAAAACGGACTTCATAACGAGTCATTATCCAAATCGGTCTAACTTTTACCAAGTTTTAGTTTTGATTTATTTGTTCTTTAGTATGTATGTTTTTTAATTACCAAACAAAAACAATGATAAGGTCTCTCATTGGTTAAATAAAATAGACTAAGTTAATGATAGATACGTTGAACTCGTATCATCATATTTTTATGAGCTAATTTTAATAAGCAGGCACTTTATTTGTGCTTTAACATGTTGGTCTAGTCAAAACAAAGACATTTTATCAATGTGAAATTTGTTTTACAACTAAATCACAATTTTTTTTTTATACATAAATTGTTATTTTTAGAGGTTAAACTCAGCTTTATTTTATATTATATTATTATTAGATATAAATATATCATGCATGTATTCTTGTAAACCCTCAAAACATGGTAAATAACTTATTACAATATGATCAAGTAAAATAATTATATAATATTTACTGTATTAAATTAAATTAAATTATGTCATTAATATATATAGTTCGAATTCTTATTTAATAATATGTATTTTTTTTTAATATAACAGGAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTAT</genome_strand>
        <mrna_strand>TGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGAGCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAACTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATCAGGTTCAAAGCTGATAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTCATTGTGAAAGATGGAAAAGGCTCTCAAGAGAAATTGCTTCCTCCCCCTCCTGATATGCCCCTGTGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAA-TTTTGGAACATACTCTAATGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCGTTACGATGACATATATAGCTTGGATATAAATA-TT-TATGT-CTCTGTTTTTCTTATATGGAGAAAAATTGATATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326243" ref_strand="+" ref_description="SGN-E326243 [cTOC-16-L6]">
      <seq>ttcgagatccctatatactccatcttcaatttcaattcaaacattcaaaattttctcagtgaatttagctgtgagatttgtaaatagttgcgaaaatgatggctgatgatctcggcgttgaggcgaaggaagcctccgttcgtgaggtcgctaagctattgcctttacctgagcttttacagtctatttcctcgatcaaagccgattatattgctcgtcaacaggcaaatgatgcacaacttagtacaatggtcgctgaacaggttgagcaagctcaaggtggtctgcaatcactttctttatctcagaagactataaatcagctccgagaaaacttcctttctattgaaaagctttgtcaagagtgccaaactttaatcgaaaatcatgaccagataaaaattctcagtaacaccaggaataacttgaacactactctgaaggatgtggaggggatgatgtcaatttcggtagaggcgtctgaagcacgggattctcttagagatgataaggaactaattaacacctatgaaaggttaactgctcttgatggnaagcgaaggttcgcgctagctgctgcagggtctcataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="13883" stop="16825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14183" g_stop="14406" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14407" i_stop="15164" i_length="758">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15165" g_stop="15203" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="263" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15204" i_stop="15427" i_length="224">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15428" g_stop="15516" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="352" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15517" i_stop="15595" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15596" g_stop="15686" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="443" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15687" i_stop="16278" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16279" g_stop="16368" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="533" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16369" i_stop="16463" i_length="95">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16464" g_stop="16525" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="595" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E326243" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14183" e_stop="14406"/>
          <exon e_start="15165" e_stop="15203"/>
          <exon e_start="15428" e_stop="15516"/>
          <exon e_start="15596" e_stop="15686"/>
          <exon e_start="16279" e_stop="16368"/>
          <exon e_start="16464" e_stop="16525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGATCCCTATATACTCCATCTTCAATTTCAATTCAAACATTCAAAATTTTCTCAGTGAATTTAGCTGTGAGATTTGTAAATAGTTGCGAAAATGATGGCTGATGATCTCGGCGTTGAGGCGAAGGAAGCCTCCGTTCGTGAGGTCGCTAAGCTATTGCCTTTACCTGAGCTTTTACAGTCTATTTCCTCGATCAAAGCCGATTATATTGCTCGTCAACAGGTTTCATATAGATCCACTGCTTATTTTTTCCTTTTGTTTGTTTTACGGTGAAATTTTGAGTATGTTGTGAAGTTTTTTATTTGTTCTGTCTAGGGAAATTTATTGTCATTTGTAGTTCAATTGTGTAGAGGAACTGTTATGAGTTGTTGACAGTCTGTTTGAAGCAGATAGTGATTGAGCAATACGAATTTTGGAGATTGTTTCTTAATTCAAGTTTAAATTGAGGAAAAAATGTATTGTGATCAGGAAATTCTTTAAGAGCTACCTTATGCATCTGGTATCAGATGACTTGTCAATTTTTTTTCTTTTTTGGTTGCCACATAAATGTGTTGCTTTGAACGTTTAGGTTTGGTTACTAAGTCGCTGTTCCTGAATTTCAGTTGCTTCTTTATTGAAAATCTAAAAGTAATGTAGAAAATGTCATAAATACGATGAAATAAATTTCAGCTTTTGATATATTGTGGTAATCTGTTAAAGTGATCTAATTACCTGCTAAAAGCAATAGGATTTTTTCTCGTGATTATAAACGAGTTGTTGATGGATCTTAACTGGCTTTCTTAGCCTCACATAGTTTATCACACATTGTAATAACATGAAGGTCCAATTTTTGGCTGATGTTGTTGCACATGGTCATGTTTATTTGTGGCTTTGTTGTAGAGAGGCTTCTTGTTTCTTCATAGTTTCAACTTAGTGGTCTGAACTTTATTTGAACTGCACTACAATTACTTATGATCTGGTACTGTTTCATGATGGATCAGGCAAATGATGCACAACTTAGTACAATGGTCGCTGAACAGGTATGTGGATGCTTCGACTTAATGTTTAAACGACACATTCTGATATTTTGATAATGCTATTGCAATTTCTTCTGTTTTTTGCTGTATTTTTACTTGGAAAGCTTTTGAAGCTCTAATTTCCACCTTGTAATTTTTTCTTACATGGAGAGAAATGTGTGATATGAGAAACATTATCTGTATCCAGATACTAAACTCTAGCTGCTGCATAATTTTCTGGAATACAGGTTGAGCAAGCTCAAGGTGGTCTGCAATCACTTTCTTTATCTCAGAAGACTATAAATCAGCTCCGAGAAAACTTCCTTTCTATTGAAAAGTATAATAATGATTCACTTTTGTAGTTACATATGTCATTATTTATTGAGCTTGAGCTTAGTTCTTTCTTCTTGAACCAGGCTTTGTCAAGAGTGCCAAACTTTAATCGAAAATCATGACCAGATAAAAATTCTCAGTAACACCAGGAATAACTTGAACACTACTCTGAAGGTATGTCTTGCTCGTAGCTTTTTGTTCCTAGCTTTTAGGTAAAGCAGGTAAGTGAAATTTTATATGACCTTTTCCTTCAAGCTGATATCTTCTATCAAATTACGCTACACTGTTGCTGCACAGTCGACTGCACACTATCATATAGGTTGCTAGTACTTCTGCTATTATAAACTCTGCTTGTGCACCTAACATTATTTATTTCATAGGGCGTTGTGCCTATTTTTGTAACAGTGACTTAGGAGCCGTTTGTTTGTGGAACTTTTTTCTTTTCGTTTTTCTCCAAAGTAACGTTTGGTTATACATTGATGGTTGAACTGATTTTTTGAAAATGAATTTCAAGTTTGAAAAAGTGATTTTGACAAGTTTAAAGTGAATCTTTTCCCCTCACAAAAATTTCAACTTTTTTCAAGTCAACTTCATGTCCAAACACAGCTTCAATCTCCAAATACACTTTTTCAACTTAACTTCAAATAGTAGTTTTCAAATGTCACATTTTCATGTCCAAAAGCTTACTTAGTTTAGTCCAAAAGCTTGGTACTCTATGATGCTTCACTGATTCTCAATCCATATATAATCGCTTCGTCTCTGGTAGGATGTGGAGGGGATGATGTCAATTTCGGTAGAGGCGTCTGAAGCACGGGATTCTCTTAGAGATGATAAGGAACTAATTAACACCTATGAAGTAGGTTCTTCTCAGATTTATCACTTTCTTAATCATCAACTCTCTCCCTAGTCCTGCGCTGATAGTCCGGTGCATCCAATTTGAATTGGTTACAGAGGTTAACTGCTCTTGATGGAAAGCGAAGGTTCGCGCTAGCTGCTGCAGGGTCTCATAAAGA</genome_strand>
        <mrna_strand>TTCGAGATCCCTATATACTCCATCTTCAATTTCAATTCAAACATTCAAAATTTTCTCAGTGAATTTAGCTGTGAGATTTGTAAATAGTTGCGAAAATGATGGCTGATGATCTCGGCGTTGAGGCGAAGGAAGCCTCCGTTCGTGAGGTCGCTAAGCTATTGCCTTTACCTGAGCTTTTACAGTCTATTTCCTCGATCAAAGCCGATTATATTGCTCGTCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGATGCACAACTTAGTACAATGGTCGCTGAACAG................................................................................................................................................................................................................................GTTGAGCAAGCTCAAGGTGGTCTGCAATCACTTTCTTTATCTCAGAAGACTATAAATCAGCTCCGAGAAAACTTCCTTTCTATTGAAAA...............................................................................GCTTTGTCAAGAGTGCCAAACTTTAATCGAAAATCATGACCAGATAAAAATTCTCAGTAACACCAGGAATAACTTGAACACTACTCTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGAGGGGATGATGTCAATTTCGGTAGAGGCGTCTGAAGCACGGGATTCTCTTAGAGATGATAAGGAACTAATTAACACCTATGAA...............................................................................................AGGTTAACTGCTCTTGATGGNAAGCGAAGGTTCGCGCTAGCTGCTGCAGGGTCTCATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253474" ref_strand="+" ref_description="SGN-E253474 [cLEG-24-P8]">
      <seq>cataaagaagagggtggtagactaagagaatattttgaagatgtggattgaacatgggagacgtttgagaagacactgtgggcccatattgcaaatttctccaaactggcttagggtagcccacaaacactcgtccgtgctataagggttgttgaaatgcgagaaatcctatatcaacaactcgcagaaaaagcacctgaggctgagggaggtggtgctatggcttcagtcgcaaatcctcgaagaaatgccaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="16776" stop="18491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17080" g_stop="17172" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="119" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17173" i_stop="17832" i_length="660">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17833" g_stop="17859" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="146" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18084" g_stop="18191" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="254" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18296" g_stop="18303" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="262" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E253474" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17080" e_stop="17172"/>
          <exon e_start="17833" e_stop="17859"/>
          <exon e_start="18084" e_stop="18191"/>
          <exon e_start="18296" e_stop="18303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATTTTGAAGATGTGGATAGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTAAGGATAGGTATTCTTTATTGTTTAAAGAATCATTTATCAAGCTTTCCAATCACGCTGCCTGCATTACGATAATCTTGTTCGTGGAAGTTAATATTTGTGATTCATGATTACTAAGTACATAATTCATGATTACAAAGAATGCATAGATGGATGAATGATCTAATGAATGAACAAATGATAATATATATGAAATATTGTAGTTGTTTCACTCATATCTTAATCTGTAGGAGACAAAGTGCTGCAAGATTAATAGTGCAACGAGGAATCTAGGCTAGACAACACCATGTAATATGTTTGCACTGTTACCTAGATCCTACATGTTTGTCCACATACAATCACTTAGCTCAAAAGCTACAGTATCACTTTAAGCTTCTCATTTTCTCCTTCATATTTTTATTCTTGGTTCTGTACTCTGAATCTTTGCTCTATAACCACTTTTACAGATCTAGTTTGCTTTCCATCTATCTTTATTGAAATATTATGATTTGTGTATGTCATTTATAATTTTTAGTGAACTAATTTCTTCATGTACCTTATAGGAAAAATGAGTAACTTATTCTTCACGTGTTAATTGGCATCTTCTAGTTTGTGCTGAATCTCTTAAATTTCATTTATTTATTTTTTGAATTCTGATTATGATATTTGTTTTGTTTGGCATAATTTGCAGCCCACAAACACTCGTCCGTGCTATAAGGTATGTTAGCTTAAATGGAAACTTTCATGGTCTATGCTGAGTTGATTAATAAGACATTTGTTTCCATTTCTAATTAACGTACTTGTACTGTGTCGGAGCTGCCCCTAATATGCCATTAATCTTGACGTATATTGCACATATACAGTGTATAGTACCTTCATGCTCATCAATACATGTTACATGTATCCACGATCTAGACTGATAATTTATTCACCCTTAATCAGGGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAAGTAGGTGCTTTATCTTGCCTGATTTGTGCTTTGTTTAACGTCGTGCGTGCATCAGACATGTAAAAGTCATCAATTTGTATTCTGATTAATGTATTGGCTTGCAGAAAAACAA</genome_strand>
        <mrna_strand>AGAATATTTTGAAGATGTGGATTGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTTAGGGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAAACACTCGTCCGTGCTATAAG................................................................................................................................................................................................................................GGTTGTTGAAATGCGAGAAATCCTATATCAACAACTCGCAGAAAAAGCACCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA........................................................................................................AAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334184" ref_strand="+" ref_description="SGN-E334184 [cTOD-21-D19]">
      <seq>actcgtccgtgctataagggttgttgaaatgcaagaaatcctagatcaacaactcgcagaagaagcagctgaggctgagggaggtggtgctatggcttcagtcgcaaatcctcgaagaaatgccaaaaaaacaacttcttctaaaaatctcacacagcagaagttgaaggctcagggaaaaggctacaaggacaaatgttatgaaagtataaggaagtctgttgaagcacgttttgacaaattgctcgatgagcaagaccttaaaacagctatagaggaagctagagtgataggagaagagcttggagagatatatgactatgtggctccttgttttcctccaagatatgaagttttccagctcatggtaaatctttatacagagagatttgttcagtggctgagaaagatgagtgatcaagctagtaatatgacaaatatagagattttaaaggtaacaggttgggtggttgattaccaagaaagtctaattgagcttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatcctagaggcagacaaagtacagccacctaaaaagactgatgatgggaaactatatacacctgcccgcgttgacttatttangattctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="17779" stop="22231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17842" g_stop="17859" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18084" g_stop="18191" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="126" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18296" g_stop="18458" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="289" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19583" g_stop="19638" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="345" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20363" g_stop="20471" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="454" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="595" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21784" g_stop="21931" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="743" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E334184" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17842" e_stop="17859"/>
          <exon e_start="18084" e_stop="18191"/>
          <exon e_start="18296" e_stop="18458"/>
          <exon e_start="19583" e_stop="19638"/>
          <exon e_start="20363" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGTCCGTGCTATAAGGTATGTTAGCTTAAATGGAAACTTTCATGGTCTATGCTGAGTTGATTAATAAGACATTTGTTTCCATTTCTAATTAACGTACTTGTACTGTGTCGGAGCTGCCCCTAATATGCCATTAATCTTGACGTATATTGCACATATACAGTGTATAGTACCTTCATGCTCATCAATACATGTTACATGTATCCACGATCTAGACTGATAATTTATTCACCCTTAATCAGGGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAAGTAGGTGCTTTATCTTGCCTGATTTGTGCTTTGTTTAACGTCGTGCGTGCATCAGACATGTAAAAGTCATCAATTTGTATTCTGATTAATGTATTGGCTTGCAGAAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTGGTTAGAATATCTGCTTTTACATGTGGTCGTCTTCAACTTGCCTGCATTTAGAAGTTAAAACTGTTTACTTCTCCAAAGACAGTTTTTATAATCGACAAATTGAAAGATAATGGTTCTAAAGTAGACTTTGATATGGTTAAAGAAAACATATGTTCATCTTTTATGAAGTCTTTCTATCAAAACTCTTGATGCTTATCAAGGACCTCGTTGCCTTTCATGTATAGTCATATATGTTGACACAAATTGTCCCCATTTTTCTTCATCTTTCTGACAAAATACCAAGCTTTCCAGAGCACGTGCCCCATTTTAGTTGCTGATATCACGCTTTCCTAACTAATGTCTTGTTAACGACTCAACTAGCTTTCTGATGGAGCAGACATTGAGTGATTTGACACATTTGGCACCTGTAGGTCTTAGACTATCATTTCTCCCCAATTTGGCACACCTTTGTTATCTTGTCTTTTTTGAGTTCAACTGCCATCATTGATCATGCGAAAGAACTGCTTGAATTGCAAGGCTGTTGTCTCACCCAATCAGTTATAGGAAATGGTCAGGAACACCTTAAAGGATTTACAAGGGATACAGCAATGAGAAGAAAACTAAGGAGAAATGGAACTCTGGGAGAAGACGCACAATTGACTACACTCCTTAAATAGTGAAATAGTAAACAATCAAAGACAAGGTGGATGTGATGATACAAATAAAACATATGTTGCGAGAATTGAGTTCTTATCTGAATAGTAAACAATTAGAACCCTTTCCATGGGGGTGCATGTCATGCTTTTCTTTTTAAAGCCTTTTGGTTTGAAAAAAATCAAGATACTTTTCTCCGTAAGACATGTCATGATGGGTTTTAACATATTATATCAACACATAAATTTGTTGAGAAGATGATTAGATAAGGCGTTCTTGGAATTGATCCCCATTAGTTTCTTTGCTTGATAAAGAAAGAACATCTGTAAACAGTAGGAGGAAGAAATCAAGGTGAGAGATACATCCTCCTGCCATAGATGAATGACAAAGTAGAGGAAAATTAAACTTTGCTGTGATATGAGTTTATTCTCATAATAATTGCAGTTATTCTTTCTTATTTTGGTTTTGACATGCAATCTCATCAATTTCAGATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAGGTTCGTCCTATGTCTTTACACATATGTAATGTCATTTTCTTTTCCATTTGTCGGGAACAACTAGATTAAAGAATAATCTCCTACACTACTCATACTCTTAAGATTGTCCTCAGGACATTCCCACTATCTCAAATTTGGGTCTGTTGTATTCATCAGAGACTATGTTGGAAGTTTCTTCTCAATTTTGGAGATTACTTGGCAAAATAACTCTTCTTTAATCAGGAGTCCCGGGGATAAGAAATGAAGTCAATTTTTGGCCCTGTTGTATCCATTATATTACTATTGTAGTAATATACAAAGTTAACCTGTTCAAAAAAAAAAAAAACTCTCATCTCTAACATTAGTCACAATCTGAAATGCTTCTCATTGCTATTAATTGCTTTCTATGACTGCTAAAGTATAATTTTCTGCATTACTCAATGTTATATAGTCGATCAACATGATGTGATGTTCTTAATATTTTTGTTGATAAGAGAAGTTTCACATGCATCTTGTCAGTACAATTTTCTTCAAAAGCTTTTTTTAGCTGTAAGCTACTGCTTGTGCTAAATAGGCCTGAATTTTGGTCTTTATCATGCAACACTTTCAACTCAGAGGCATCAAAAAAAAGGGAAAAAATAACTCAAGAGGAGTCTGTATCCTAATATCTCTTAACACATGATCTACTTCTGTTTCTTTTCCATATGCAAATGTCCATTCTAACTTATTCTTTATATTGTCTCAGATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCA</genome_strand>
        <mrna_strand>ACTCGTCCGTGCTATAAG................................................................................................................................................................................................................................GGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA........................................................................................................AAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCCGCGTTGACTTATTTANGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265446" ref_strand="+" ref_description="SGN-E265446 [cLEI-9-L17]">
      <seq>gttgaagcacgttttgacaaattgctcgatgagcaagaccttaaaacagctatagaggaagctagagtgataggagaagagcttggagagatatatgactatgtggctccttgttttcctccaagatatgaagttttccagctcatggtaaatctttatacagagagatttgttcagtggctgagaaagatgagtgatcaagctagtaatatgacaaatatagagattttaaaggtaacaggttgggtggttgattaccaagaaagtctaattgagcttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatcctagaggcagacaaagtacagccacctaaaaagactgatgatgggaaactatatacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="18090" stop="22161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18390" g_stop="18458" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19583" g_stop="19638" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="125" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20363" g_stop="20471" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="234" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="375" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21784" g_stop="21861" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="453" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E265446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18390" e_stop="18458"/>
          <exon e_start="19583" e_stop="19638"/>
          <exon e_start="20363" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTGGTTAGAATATCTGCTTTTACATGTGGTCGTCTTCAACTTGCCTGCATTTAGAAGTTAAAACTGTTTACTTCTCCAAAGACAGTTTTTATAATCGACAAATTGAAAGATAATGGTTCTAAAGTAGACTTTGATATGGTTAAAGAAAACATATGTTCATCTTTTATGAAGTCTTTCTATCAAAACTCTTGATGCTTATCAAGGACCTCGTTGCCTTTCATGTATAGTCATATATGTTGACACAAATTGTCCCCATTTTTCTTCATCTTTCTGACAAAATACCAAGCTTTCCAGAGCACGTGCCCCATTTTAGTTGCTGATATCACGCTTTCCTAACTAATGTCTTGTTAACGACTCAACTAGCTTTCTGATGGAGCAGACATTGAGTGATTTGACACATTTGGCACCTGTAGGTCTTAGACTATCATTTCTCCCCAATTTGGCACACCTTTGTTATCTTGTCTTTTTTGAGTTCAACTGCCATCATTGATCATGCGAAAGAACTGCTTGAATTGCAAGGCTGTTGTCTCACCCAATCAGTTATAGGAAATGGTCAGGAACACCTTAAAGGATTTACAAGGGATACAGCAATGAGAAGAAAACTAAGGAGAAATGGAACTCTGGGAGAAGACGCACAATTGACTACACTCCTTAAATAGTGAAATAGTAAACAATCAAAGACAAGGTGGATGTGATGATACAAATAAAACATATGTTGCGAGAATTGAGTTCTTATCTGAATAGTAAACAATTAGAACCCTTTCCATGGGGGTGCATGTCATGCTTTTCTTTTTAAAGCCTTTTGGTTTGAAAAAAATCAAGATACTTTTCTCCGTAAGACATGTCATGATGGGTTTTAACATATTATATCAACACATAAATTTGTTGAGAAGATGATTAGATAAGGCGTTCTTGGAATTGATCCCCATTAGTTTCTTTGCTTGATAAAGAAAGAACATCTGTAAACAGTAGGAGGAAGAAATCAAGGTGAGAGATACATCCTCCTGCCATAGATGAATGACAAAGTAGAGGAAAATTAAACTTTGCTGTGATATGAGTTTATTCTCATAATAATTGCAGTTATTCTTTCTTATTTTGGTTTTGACATGCAATCTCATCAATTTCAGATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAGGTTCGTCCTATGTCTTTACACATATGTAATGTCATTTTCTTTTCCATTTGTCGGGAACAACTAGATTAAAGAATAATCTCCTACACTACTCATACTCTTAAGATTGTCCTCAGGACATTCCCACTATCTCAAATTTGGGTCTGTTGTATTCATCAGAGACTATGTTGGAAGTTTCTTCTCAATTTTGGAGATTACTTGGCAAAATAACTCTTCTTTAATCAGGAGTCCCGGGGATAAGAAATGAAGTCAATTTTTGGCCCTGTTGTATCCATTATATTACTATTGTAGTAATATACAAAGTTAACCTGTTCAAAAAAAAAAAAAACTCTCATCTCTAACATTAGTCACAATCTGAAATGCTTCTCATTGCTATTAATTGCTTTCTATGACTGCTAAAGTATAATTTTCTGCATTACTCAATGTTATATAGTCGATCAACATGATGTGATGTTCTTAATATTTTTGTTGATAAGAGAAGTTTCACATGCATCTTGTCAGTACAATTTTCTTCAAAAGCTTTTTTTAGCTGTAAGCTACTGCTTGTGCTAAATAGGCCTGAATTTTGGTCTTTATCATGCAACACTTTCAACTCAGAGGCATCAAAAAAAAGGGAAAAAATAACTCAAGAGGAGTCTGTATCCTAATATCTCTTAACACATGATCTACTTCTGTTTCTTTTCCATATGCAAATGTCCATTCTAACTTATTCTTTATATTGTCTCAGATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCT</genome_strand>
        <mrna_strand>GTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209851" ref_strand="+" ref_description="SGN-E209851 [cLEC-52-M21]">
      <seq>gagagatatatgactatgtggctccttgttttcctccaagatatgaagttttccagctcatggtaaatctttatacagagagatttgttcagtggctgagaaagatgagtgatcaagctagtaatatgacaaatatagagattttaaaggtaacaggttgggtggttgattaccaagaaagtctaattgagcttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatcctagaggcagacaaagtacagccacctaaaaagactgatgatgggaaactatatacacctgccgccgttgacttatttaggattctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggatcgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="19299" stop="23375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19599" g_stop="19638" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20363" g_stop="20471" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="290" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="470" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="554" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E209851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19599" e_stop="19638"/>
          <exon e_start="20363" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAGGTTCGTCCTATGTCTTTACACATATGTAATGTCATTTTCTTTTCCATTTGTCGGGAACAACTAGATTAAAGAATAATCTCCTACACTACTCATACTCTTAAGATTGTCCTCAGGACATTCCCACTATCTCAAATTTGGGTCTGTTGTATTCATCAGAGACTATGTTGGAAGTTTCTTCTCAATTTTGGAGATTACTTGGCAAAATAACTCTTCTTTAATCAGGAGTCCCGGGGATAAGAAATGAAGTCAATTTTTGGCCCTGTTGTATCCATTATATTACTATTGTAGTAATATACAAAGTTAACCTGTTCAAAAAAAAAAAAAACTCTCATCTCTAACATTAGTCACAATCTGAAATGCTTCTCATTGCTATTAATTGCTTTCTATGACTGCTAAAGTATAATTTTCTGCATTACTCAATGTTATATAGTCGATCAACATGATGTGATGTTCTTAATATTTTTGTTGATAAGAGAAGTTTCACATGCATCTTGTCAGTACAATTTTCTTCAAAAGCTTTTTTTAGCTGTAAGCTACTGCTTGTGCTAAATAGGCCTGAATTTTGGTCTTTATCATGCAACACTTTCAACTCAGAGGCATCAAAAAAAAGGGAAAAAATAACTCAAGAGGAGTCTGTATCCTAATATCTCTTAACACATGATCTACTTCTGTTTCTTTTCCATATGCAAATGTCCATTCTAACTTATTCTTTATATTGTCTCAGATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</genome_strand>
        <mrna_strand>GAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461366" ref_strand="+" ref_description="SGN-E461366 [cPRO-8-A10]">
      <seq>accaagctaataatatgacaaatatagaaattttaaaggtaacaggttgggtggtcgattaccaagaaagtctaattgaacttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatccttgaggcagacaaagtacagccacctaaaaagacagatgatgggaaactatatacacctgctgccgttgacttatttaggatcctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggattgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaacaacaatcttcgctgttatgatcttgcgatggagctaagttctagtactcttgaagctctcccacagaactatgctgagcaggttaattttgaggacacttgcaaagggtttctagaggttgcaaaggaagctgttcatcaaactgtcagtgttatctttgaagatccaggagtcgaggaactgctcgttaaattgtatcagaaagattggctggaaggacaggttaccgagttcctagttgcaacatttggagactacttcactgatgtgaagatgtacattgaagaaagatcatttaggcgttttgttgaggcttgcctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="20134" stop="29534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="20471" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="179" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="359" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="443" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23073" i_stop="23171" i_length="99">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23172" g_stop="23258" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="530" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23259" i_stop="24680" i_length="1422">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24681" g_stop="24725" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="575" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24726" i_stop="26767" i_length="2042">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26768" g_stop="26846" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="654" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26847" i_stop="28901" i_length="2055">
            <donor d_prob="0.651" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28902" g_stop="28971" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="724" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28972" i_stop="29186" i_length="215">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29187" g_stop="29234" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="772" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E461366" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
          <exon e_start="23172" e_stop="23258"/>
          <exon e_start="24681" e_stop="24725"/>
          <exon e_start="26768" e_stop="26846"/>
          <exon e_start="28902" e_stop="28971"/>
          <exon e_start="29187" e_stop="29234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATGGTTTGTAAAATTTGGAAATCTGAACTGTTTATTGTGAAGTAGAAAGATCTTTAAATTACCCTGTGCTTACCACTATGCTAAGAGATGGACACCTGGCAGATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAGGTCCTTATTAGTTTTTCCCTCCTCCTTGACTGCTGCGTAAATCTTCTGTGCTTACTGCCCTTTTGTCTTCAATCATCTTGACCATTAGCTTACATCTAGGATTAATCTGATAGGATATTATTCTTTCATGTCGATTTTTTTTTTAAAAAGATAATAGACTAAGGTGGTTCGTATGTGAATGTCTTTAGTTCTTATTATTGTTAAAATATTGCTGTGGTCTTGTGCATCTTGCTGGTGTTATTATATTTTACTTTTTACTTCTTGGTTAGGAGAACAGAGTCTTGTTCTTTTGATAGGTGTAAATAGAGTCTCATTTATAAGGTAGTAAGGGTGTACAGGAGGACTGGTGTCCATAACTATAGGAAAATGTTACTTCTGATTCTGATAAAAATGAACCATCCGATCTCACTGAGTGTTGGTAAATACTTGCTGATCATAAAAATTAATTATCAATAAAAAGGATACCATGTAGAAAGATGGAGAGCAATATTTAAAACATGTCCTGAAAGAAACTTACCTTAGAAGTATTGACATTGGGCTGTAACCAAAAACTTAATATGACGACCAATTATGTATGTTTCCAGAGAAAAAACGCCACCCTTTTTCTGCAATAAAAGTCCAATGTTTTCCAGTTAAAGACTCAAGAAATGAAGTGAAGTACATAAAACTTATCAAACAGTCATATAACCTCTGCCACTAGCTCTTGCCAAAGAAAAATGGATGAACGGGTCACATTGCTCTTCTATAACAAATGTAATGATGTAGGTTACTAATCCAGAAAGGACCTACAATCAGAATAGCCCGCTTCATGTGAGTAAATCATGACTTCATGAGGCAATGTAACATAAAAGAATCAGAAGTTGGGTGCAGAAATATGAGCATCTATGATGTTTCTATACCTCTGTGTGAATGTGTGGGCATGTGTGTATGTTTCAATCAAATATTCCTTCTCACAAGCCTCCCCATTCAAGCAACTCCTGCTATTCCCCTTCATTGTCGATGAGAGTGGAGATTCTGCACGGCAGCAGTGGTACAACCTTCATGGCTCGATACTATCATATTTTACGATTAAGATGATCTAATCTAGTACATAGACCAGCTAATGCCTGATGTAGACCAGCAAGTAGTTCTATCTTTGATGTTGTAGACTATGATTTGTTTTGAATATATGGTTTTCAGAAATGCTTTGTCAAAGAAATATGGATGTCTGATACGGTTAGAGAGTTCTGCATTCAACTCTTCTTATCAATGTGATTATTTGTTACTTCTTAGTTATTTGGTCTGGAAGTTCCATTTCTGGCACTCACATCTTGCTCTTGTCAATGTGATTATTTTTCAAGTCCTAAGTTGTTTGTGCTACAACTTGCATTTCTGGCACTCAAGTTCACATCTCTTATATTAAGTTCTTTGATTGCTTCTCAGGTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAGGTATATTGAAGGCTTCATTTTATGGATGCATGTGACTATAATATTGTAATTAAGTGGGCAACCTATCTCATTTTGAGGATTGATTCTTTTTTTTTCTTTTGCGACAATCTCTAGAGTTAATTCCGCATTCAATTTTATTGAGGAGTTTAAGGGATGGCCTACTGGAAACTAGATATAAGCCAAATGTAGAGATGGGAAAATTAGCCTTTGAAACATGACCCATTTAACCCCCTAAGTTTGGGTGGGTTATTGACCCGACTATTACAACCCATAAAAATGAGCTTATATGTAGTCCAAATTTACCCATGAGAAATCTTATCAAAATATTATTAAGACATTTTTTTATTTTATGTGTTATATAGCCATAACAAAGAAAATATTGCTTAAGGTTGAAGGTCATCAAAAAATATAGCCATAACAAAGAAAATAAATAGTTTTATTAGGTTCTAAAATTATAAATGATAAAATAAAGCAACGAAAACTTAGTAAAAATTGGGCGGATTGGGTTATGGCTTGTTTTCTAGGCCATTTCAGCCCAAATAGCTTTTTGGCGGGTTATTTTTTGACTTAGCCAGTTTAAAACCTATAGTTAGATATAGGTGCATTAGTTCAATATTGCTTAAGGCTGAAGGTCTCAAGTCAAGGATCGTAAAATCCATGACATGTCTCTTTCCCGAAACAATATTAAAGACCATGTATTCGTTGAGGCACCCTTTGAGGTGCAAAGCATTAGAAAATTGAAGTAGCCTATGAAAATTGTATAACACATCCAAAATCTCTATCATCCTTTCCATTTCAAGAAAATAGAAGGAAATGATATCATATTGGAAATACCAAAGAGTTAAAATTAAGGCTTAGTTTATTATATTTATATCAGGTTGTGTCTTGATAATTTTCTTTTAGTTATATTAGATAGGGTGTTTGACAGGTGTTCTAGGTGTCCTTGTTGTCTGTTTTGGGACTTCCATGCTAGTATGGGAACAAGGGACAAGTGTGAGATTTAAAGAACTTTAAGCGTTATGGAACGCTTAATTCTCCTTAAAAGACAAGTTAATTTGCTAGTGTTGGAATGAAATGGACCAGAGCTTATGGATATGGAAGGCTTGCTTTTTTGTTTTTTTATTGTTAGGATATGAGGGCTTGTTTTTGTTCTGCTTAGCTTTGGATTTGGGCATAATTGATGGATTGGTGGACAACAAAGACTTAGCCTCTCAAACCCTACAAATAAAACCAGACCCACACTGCCGCACAGGCGCACACTGCATTTAAAAATAATTACCAAAGTATCCAACTGCCTAAATCCAAAAGCCCTTTTTGGGTAAGCCCAAATTGGACAACCATCAAAGGTGATTGTCAAAGTTTTTGCTCAGATTGCCCCTTCTTTGGTATGATCTTTATTTTTGCCCCTACTGCTGATTTTATGAAAATTTGTGGGTAAAAATACGATTATAGATGGTCTACTTTTGCTTGACGTAAGTTTAGAGAACTTTTGCCTTATCTGGCGCAGGTTGTGTAGTATCTAATTCGCTTGTCATAAGTTTAGAGAACTTTGGCCTTATCTGGCCTAAGTTTTGTAGTATCTAATTAACTCGTCGTAAGTTTAGAGAACTTTTGCCTTTTCGGCATAATTGTGAAGTATCTAATGCGCTTGGCATAAGATAGAGAACTATTGCTTGTCTGTCATACGTTTTGTTGGAATTAAGTCATGCCTCTTACGAAATAGCTTGTGGGTTCTGAAACTGAATTTGTGCCTCTATTGGCTTAAGTTTTGTAGGAACTAAGTCATGCCTTTTACGGCATAACCTGTAGGTCTTGAAACGAACTGAACTTATGGTAGGGGCATTAGTGCAAATGACCCGTAATTGTCAGTGTTTGTTGCTTAGAGGTCTCAAGTCTTGTCTGAACAGACATATTTGAGAAGGGGCAGAGTAGTGGACTTGACACTTGCGCTGGCAAGAATGGGGAGCGTTAAAGTTCACGGATTAGACTCTCGACTTCCATTTACAAATATCTCGTATCTGACCTGCTCTCACTTATTGCAGGAAGCTGTTCATCAAACTGTCAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAATTGCTCGTTAAATTGTATCAGAAAGGTGAGATGTTCCTCAGATACTTTCTTTTGCTAGGAGCTTTCTCTCCATCTGTTGAAAGCATTTATCTCAGATTTGTTACTATATTTCAGTGTAAACTGTTGGATCTACTCTGTCTTTTTGCTATGTTCACAAAGAGATTCTAATCATTTTACGTCATACAGTGTCTCTAGTTGCTTGTATTTTCTTGAGCATTTTGTATTGTTGTCCCAGTTGGATTATTTTGATTGTATACATGTATTTGCTTCTTTTATAGTTCTGATAATGTTGTCGTCATGATTACTCATATATTGAAGTATCTGCTCAAAGATGAAGAGAAGAAAGCATGAGTTGATCATTTCTCCCTTCATGGCTTCATCTCCAAAATAAGTCTCCATCTTTCCTTCTAGTGTCTAAAAATATAAATGCTGACTGTTCTTACTTGAAAAGAGAAAGGTCTGGTTTATTTATGACACAAGGTTATAAATAACACAATTGTTTCATTTGTTCCTCACAAACCATTTTTCTAATTACTTTGCAAGACAAAAACCGATACATGGTTTCACATGACAAAATATACAGTTTCAACAGTTATTCTAAAAGAAGTTCGTACTTCCAATTTTAAACTAAGGGAAGATTACTCGTAGATTTTGAACTTCCATTTTTGAATATTAGAGTAAGAGAAGTGTTAAATAGTAACATAGAACTGAAAATTACTCTAAGGATAATTATTTTGAAGACATGTCACATCAAAATTAAGATAATATAAATATTACTTGCGTAATTTGAATTGGTATTTGAAAAACAAATAAGCAAAGTTGGTCTTTGTGATGGAACGATACATAATTCTGTGTGGAGTCATTAGCTGTGTGACTTGGCTTAAAATGTCCTTCATTTCTTTGATAACCAAAGAAAGCCCGTTATAGAATCTTTTTTCTTCTTCTTTCATAGAATGTGGCTGCCAGTTACTCTGCCCATCATCTTGTTAATTCCAAATCTTCTATAGGCTCGGGCAGTTATTGTAGGATGTCACAATCAAAAGTTATTGAAAGGATTTTAGAGACTTCTCTTAAACAAAGTCATCCCTAACTCATAGCGTGTTGGTCCTACTTATTTTTGACCTGCAGTACACGCTTGCTTCTTGTTGTACTTTGATGAGATTTTATGGCAATATGATAGTAGAAGGGATGAAGTATTAAAATAAATTATTTTGTAAACATGTTACAACAATTTTCATCCTTGGTTGCATGACAATTTTCGATCAGACAACTAATATGTTAGAAGCGAAAGGACGCCTATCTCTCTTACAATGTAGAAACCTCATCAGCTGTATTCATATACTTGGTGGTACATTAGTTGCCTGTCTTTAGAGGAATAAGAAAATATCCTCCCGTCCCAATTCTCATGATTATCTCTCTTCCATTCTCATTTATCACAAAGTGAATGTTCAGTTTTGTGATGAGGAGCCTTAGGTATTTGTGTTTGATTACCAAAAGTCATGTCAAGTCCAAACTACTCCTCTACTATTCTAAAGACAGAAAATATCATGGTTCCTTTTCCAACTCCCTCATACAATCAGTAGCAGCTATGCATTTTATTCAAGTCCCGGTTTGTCCCCCTTTTACAACCTAGGAATATACATCAATGGGCTTAAAGTAACGCTTTTTGACTAATACACTTTGTTGGTTCAACGAACAATTAATTCTAATTCGTCAAACTGGAATGTTGAGTTTGGATAAAGGGATAGCTAGAATAGATGGATGTAATTAATTTGAAACTAACTTATGGAATTTGCCTAGCAATTAATGGTAGGAACAAGATCTGCAACCGTTATAAACTGTTCTGCAACCTAGCAATGGACGCTAGAAGCAAGATATTTCTAGCCACATAGAAGGAGTCTAACCATTACGTACTGTACCAAATAAAAGCCTTCTATTATCTTTGTGCCTATCAAAAAAATGTGTAGCATTCTGTCAATGAATTAATCCAAGTCAGATATTATGCAAGTGATTTAGGTTGTCAATTGTGATAATTTTAAACTCTAGCCTTCACTTGAATATTCTATGTTCTATATCTCAGATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACGTTTGGAGACTACTTCACTGATGTGAAGATGTGAGTTTTCTTCTGTGCTTAACTCTTATAATAGCTTTGAATGGCATGATCATGTTGCTGTGCTCCTCCCATGGAATTCTTTTTTCTCCTATTCATTTAAGCTATTAAAATATTTTTATGTTCATATGCAGCGGCAGCAACAGTTTTTAATTGAGAGATATCCTAGTATGAGAGGCACATATCCTTAACTCATGTGTGTTTCACAATTTTTAAAGGTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGA</genome_strand>
        <mrna_strand>ACCAAGCTAATAATATGACAAATATAGAAATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTCGATTACCAAGAAAGTCTAATTGAACTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTTGAGGCAGACAAAGTACAGCCACCTAAAAAGACAGATGATGGGAAACTATATACACCTGCTGCCGTTGACTTATTTAGGATCCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATTGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG...................................................................................................ATTAACAACAATCTTCGCTGTTATGATCTTGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGTTCATCAAACTGTCAGTGTTATCTTTGAAGATCCAGGAGTCGAGGAACTGCTCGTTAAATTGTATCAGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACATTTGGAGACTACTTCACTGATGTGAAGAT.......................................................................................................................................................................................................................GTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430175" ref_strand="+" ref_description="SGN-E430175 [STM-53-C6]">
      <seq>accaagctaataatatgacaaatatagaaattttaaaggtaacatggttgggtggtcgattaccaagaaagtctaattgaacttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatccttgaggcagacaaagtacagccacctaaaaagacagatgatgggaaactatatacacctgctgccgttgacttatttaggatcctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggattgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaacaacaatcttcgctgttatgatcttgcgatggagctaagttctagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="20134" stop="23524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="20471" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="180" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="360" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="444" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23073" i_stop="23171" i_length="99">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23172" g_stop="23224" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="497" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E430175" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
          <exon e_start="23172" e_stop="23224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACA-GGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATGGTTTGTAAAATTTGGAAATCTGAACTGTTTATTGTGAAGTAGAAAGATCTTTAAATTACCCTGTGCTTACCACTATGCTAAGAGATGGACACCTGGCAGATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTAC</genome_strand>
        <mrna_strand>ACCAAGCTAATAATATGACAAATATAGAAATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACATGGTTGGGTGGTCGATTACCAAGAAAGTCTAATTGAACTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTTGAGGCAGACAAAGTACAGCCACCTAAAAAGACAGATGATGGGAAACTATATACACCTGCTGCCGTTGACTTATTTAGGATCCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATTGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG...................................................................................................ATTAACAACAATCTTCGCTGTTATGATCTTGCGATGGAGCTAAGTTCTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485063" ref_strand="+" ref_description="SGN-E485063 [cSTE-16-K14]">
      <seq>tttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatccttgaggcagacaaagtacagccacctaaaaagactgatgatgggaaactatatacacctgctgctgttgacttatttaggatcctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggattgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaacaacaatcttcgctgttatgatctcgcgatggagctaagttctagtactcttgaagctctcccacagaactatgctgagcaggttaattttgaggacacttgcaaagggtttctagaggttgcaaaggaagctgttcatcaaactgttagtgttatctttgaagatccaggagtagaggaactgctcgttaaattgtatcagaaagattggctggaaggacaggttaccgagttcctagttgcaacatttggagactacttcactgatgtgaagatgtacattgaagaaagatcatttaggcgttttgttgaggcttgcctggnagagactgttgttgtatatgtggatcatctacttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="21325" stop="29571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21625" g_stop="21695" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="251" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="335" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23073" i_stop="23171" i_length="99">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23172" g_stop="23258" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="422" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23259" i_stop="24680" i_length="1422">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24681" g_stop="24725" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="467" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24726" i_stop="26767" i_length="2042">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26768" g_stop="26846" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="546" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26847" i_stop="28901" i_length="2055">
            <donor d_prob="0.651" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28902" g_stop="28971" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="616" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28972" i_stop="29186" i_length="215">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29187" g_stop="29271" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="701" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E485063" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21625" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
          <exon e_start="23172" e_stop="23258"/>
          <exon e_start="24681" e_stop="24725"/>
          <exon e_start="26768" e_stop="26846"/>
          <exon e_start="28902" e_stop="28971"/>
          <exon e_start="29187" e_stop="29271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATGGTTTGTAAAATTTGGAAATCTGAACTGTTTATTGTGAAGTAGAAAGATCTTTAAATTACCCTGTGCTTACCACTATGCTAAGAGATGGACACCTGGCAGATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAGGTCCTTATTAGTTTTTCCCTCCTCCTTGACTGCTGCGTAAATCTTCTGTGCTTACTGCCCTTTTGTCTTCAATCATCTTGACCATTAGCTTACATCTAGGATTAATCTGATAGGATATTATTCTTTCATGTCGATTTTTTTTTTAAAAAGATAATAGACTAAGGTGGTTCGTATGTGAATGTCTTTAGTTCTTATTATTGTTAAAATATTGCTGTGGTCTTGTGCATCTTGCTGGTGTTATTATATTTTACTTTTTACTTCTTGGTTAGGAGAACAGAGTCTTGTTCTTTTGATAGGTGTAAATAGAGTCTCATTTATAAGGTAGTAAGGGTGTACAGGAGGACTGGTGTCCATAACTATAGGAAAATGTTACTTCTGATTCTGATAAAAATGAACCATCCGATCTCACTGAGTGTTGGTAAATACTTGCTGATCATAAAAATTAATTATCAATAAAAAGGATACCATGTAGAAAGATGGAGAGCAATATTTAAAACATGTCCTGAAAGAAACTTACCTTAGAAGTATTGACATTGGGCTGTAACCAAAAACTTAATATGACGACCAATTATGTATGTTTCCAGAGAAAAAACGCCACCCTTTTTCTGCAATAAAAGTCCAATGTTTTCCAGTTAAAGACTCAAGAAATGAAGTGAAGTACATAAAACTTATCAAACAGTCATATAACCTCTGCCACTAGCTCTTGCCAAAGAAAAATGGATGAACGGGTCACATTGCTCTTCTATAACAAATGTAATGATGTAGGTTACTAATCCAGAAAGGACCTACAATCAGAATAGCCCGCTTCATGTGAGTAAATCATGACTTCATGAGGCAATGTAACATAAAAGAATCAGAAGTTGGGTGCAGAAATATGAGCATCTATGATGTTTCTATACCTCTGTGTGAATGTGTGGGCATGTGTGTATGTTTCAATCAAATATTCCTTCTCACAAGCCTCCCCATTCAAGCAACTCCTGCTATTCCCCTTCATTGTCGATGAGAGTGGAGATTCTGCACGGCAGCAGTGGTACAACCTTCATGGCTCGATACTATCATATTTTACGATTAAGATGATCTAATCTAGTACATAGACCAGCTAATGCCTGATGTAGACCAGCAAGTAGTTCTATCTTTGATGTTGTAGACTATGATTTGTTTTGAATATATGGTTTTCAGAAATGCTTTGTCAAAGAAATATGGATGTCTGATACGGTTAGAGAGTTCTGCATTCAACTCTTCTTATCAATGTGATTATTTGTTACTTCTTAGTTATTTGGTCTGGAAGTTCCATTTCTGGCACTCACATCTTGCTCTTGTCAATGTGATTATTTTTCAAGTCCTAAGTTGTTTGTGCTACAACTTGCATTTCTGGCACTCAAGTTCACATCTCTTATATTAAGTTCTTTGATTGCTTCTCAGGTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAGGTATATTGAAGGCTTCATTTTATGGATGCATGTGACTATAATATTGTAATTAAGTGGGCAACCTATCTCATTTTGAGGATTGATTCTTTTTTTTTCTTTTGCGACAATCTCTAGAGTTAATTCCGCATTCAATTTTATTGAGGAGTTTAAGGGATGGCCTACTGGAAACTAGATATAAGCCAAATGTAGAGATGGGAAAATTAGCCTTTGAAACATGACCCATTTAACCCCCTAAGTTTGGGTGGGTTATTGACCCGACTATTACAACCCATAAAAATGAGCTTATATGTAGTCCAAATTTACCCATGAGAAATCTTATCAAAATATTATTAAGACATTTTTTTATTTTATGTGTTATATAGCCATAACAAAGAAAATATTGCTTAAGGTTGAAGGTCATCAAAAAATATAGCCATAACAAAGAAAATAAATAGTTTTATTAGGTTCTAAAATTATAAATGATAAAATAAAGCAACGAAAACTTAGTAAAAATTGGGCGGATTGGGTTATGGCTTGTTTTCTAGGCCATTTCAGCCCAAATAGCTTTTTGGCGGGTTATTTTTTGACTTAGCCAGTTTAAAACCTATAGTTAGATATAGGTGCATTAGTTCAATATTGCTTAAGGCTGAAGGTCTCAAGTCAAGGATCGTAAAATCCATGACATGTCTCTTTCCCGAAACAATATTAAAGACCATGTATTCGTTGAGGCACCCTTTGAGGTGCAAAGCATTAGAAAATTGAAGTAGCCTATGAAAATTGTATAACACATCCAAAATCTCTATCATCCTTTCCATTTCAAGAAAATAGAAGGAAATGATATCATATTGGAAATACCAAAGAGTTAAAATTAAGGCTTAGTTTATTATATTTATATCAGGTTGTGTCTTGATAATTTTCTTTTAGTTATATTAGATAGGGTGTTTGACAGGTGTTCTAGGTGTCCTTGTTGTCTGTTTTGGGACTTCCATGCTAGTATGGGAACAAGGGACAAGTGTGAGATTTAAAGAACTTTAAGCGTTATGGAACGCTTAATTCTCCTTAAAAGACAAGTTAATTTGCTAGTGTTGGAATGAAATGGACCAGAGCTTATGGATATGGAAGGCTTGCTTTTTTGTTTTTTTATTGTTAGGATATGAGGGCTTGTTTTTGTTCTGCTTAGCTTTGGATTTGGGCATAATTGATGGATTGGTGGACAACAAAGACTTAGCCTCTCAAACCCTACAAATAAAACCAGACCCACACTGCCGCACAGGCGCACACTGCATTTAAAAATAATTACCAAAGTATCCAACTGCCTAAATCCAAAAGCCCTTTTTGGGTAAGCCCAAATTGGACAACCATCAAAGGTGATTGTCAAAGTTTTTGCTCAGATTGCCCCTTCTTTGGTATGATCTTTATTTTTGCCCCTACTGCTGATTTTATGAAAATTTGTGGGTAAAAATACGATTATAGATGGTCTACTTTTGCTTGACGTAAGTTTAGAGAACTTTTGCCTTATCTGGCGCAGGTTGTGTAGTATCTAATTCGCTTGTCATAAGTTTAGAGAACTTTGGCCTTATCTGGCCTAAGTTTTGTAGTATCTAATTAACTCGTCGTAAGTTTAGAGAACTTTTGCCTTTTCGGCATAATTGTGAAGTATCTAATGCGCTTGGCATAAGATAGAGAACTATTGCTTGTCTGTCATACGTTTTGTTGGAATTAAGTCATGCCTCTTACGAAATAGCTTGTGGGTTCTGAAACTGAATTTGTGCCTCTATTGGCTTAAGTTTTGTAGGAACTAAGTCATGCCTTTTACGGCATAACCTGTAGGTCTTGAAACGAACTGAACTTATGGTAGGGGCATTAGTGCAAATGACCCGTAATTGTCAGTGTTTGTTGCTTAGAGGTCTCAAGTCTTGTCTGAACAGACATATTTGAGAAGGGGCAGAGTAGTGGACTTGACACTTGCGCTGGCAAGAATGGGGAGCGTTAAAGTTCACGGATTAGACTCTCGACTTCCATTTACAAATATCTCGTATCTGACCTGCTCTCACTTATTGCAGGAAGCTGTTCATCAAACTGTCAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAATTGCTCGTTAAATTGTATCAGAAAGGTGAGATGTTCCTCAGATACTTTCTTTTGCTAGGAGCTTTCTCTCCATCTGTTGAAAGCATTTATCTCAGATTTGTTACTATATTTCAGTGTAAACTGTTGGATCTACTCTGTCTTTTTGCTATGTTCACAAAGAGATTCTAATCATTTTACGTCATACAGTGTCTCTAGTTGCTTGTATTTTCTTGAGCATTTTGTATTGTTGTCCCAGTTGGATTATTTTGATTGTATACATGTATTTGCTTCTTTTATAGTTCTGATAATGTTGTCGTCATGATTACTCATATATTGAAGTATCTGCTCAAAGATGAAGAGAAGAAAGCATGAGTTGATCATTTCTCCCTTCATGGCTTCATCTCCAAAATAAGTCTCCATCTTTCCTTCTAGTGTCTAAAAATATAAATGCTGACTGTTCTTACTTGAAAAGAGAAAGGTCTGGTTTATTTATGACACAAGGTTATAAATAACACAATTGTTTCATTTGTTCCTCACAAACCATTTTTCTAATTACTTTGCAAGACAAAAACCGATACATGGTTTCACATGACAAAATATACAGTTTCAACAGTTATTCTAAAAGAAGTTCGTACTTCCAATTTTAAACTAAGGGAAGATTACTCGTAGATTTTGAACTTCCATTTTTGAATATTAGAGTAAGAGAAGTGTTAAATAGTAACATAGAACTGAAAATTACTCTAAGGATAATTATTTTGAAGACATGTCACATCAAAATTAAGATAATATAAATATTACTTGCGTAATTTGAATTGGTATTTGAAAAACAAATAAGCAAAGTTGGTCTTTGTGATGGAACGATACATAATTCTGTGTGGAGTCATTAGCTGTGTGACTTGGCTTAAAATGTCCTTCATTTCTTTGATAACCAAAGAAAGCCCGTTATAGAATCTTTTTTCTTCTTCTTTCATAGAATGTGGCTGCCAGTTACTCTGCCCATCATCTTGTTAATTCCAAATCTTCTATAGGCTCGGGCAGTTATTGTAGGATGTCACAATCAAAAGTTATTGAAAGGATTTTAGAGACTTCTCTTAAACAAAGTCATCCCTAACTCATAGCGTGTTGGTCCTACTTATTTTTGACCTGCAGTACACGCTTGCTTCTTGTTGTACTTTGATGAGATTTTATGGCAATATGATAGTAGAAGGGATGAAGTATTAAAATAAATTATTTTGTAAACATGTTACAACAATTTTCATCCTTGGTTGCATGACAATTTTCGATCAGACAACTAATATGTTAGAAGCGAAAGGACGCCTATCTCTCTTACAATGTAGAAACCTCATCAGCTGTATTCATATACTTGGTGGTACATTAGTTGCCTGTCTTTAGAGGAATAAGAAAATATCCTCCCGTCCCAATTCTCATGATTATCTCTCTTCCATTCTCATTTATCACAAAGTGAATGTTCAGTTTTGTGATGAGGAGCCTTAGGTATTTGTGTTTGATTACCAAAAGTCATGTCAAGTCCAAACTACTCCTCTACTATTCTAAAGACAGAAAATATCATGGTTCCTTTTCCAACTCCCTCATACAATCAGTAGCAGCTATGCATTTTATTCAAGTCCCGGTTTGTCCCCCTTTTACAACCTAGGAATATACATCAATGGGCTTAAAGTAACGCTTTTTGACTAATACACTTTGTTGGTTCAACGAACAATTAATTCTAATTCGTCAAACTGGAATGTTGAGTTTGGATAAAGGGATAGCTAGAATAGATGGATGTAATTAATTTGAAACTAACTTATGGAATTTGCCTAGCAATTAATGGTAGGAACAAGATCTGCAACCGTTATAAACTGTTCTGCAACCTAGCAATGGACGCTAGAAGCAAGATATTTCTAGCCACATAGAAGGAGTCTAACCATTACGTACTGTACCAAATAAAAGCCTTCTATTATCTTTGTGCCTATCAAAAAAATGTGTAGCATTCTGTCAATGAATTAATCCAAGTCAGATATTATGCAAGTGATTTAGGTTGTCAATTGTGATAATTTTAAACTCTAGCCTTCACTTGAATATTCTATGTTCTATATCTCAGATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACGTTTGGAGACTACTTCACTGATGTGAAGATGTGAGTTTTCTTCTGTGCTTAACTCTTATAATAGCTTTGAATGGCATGATCATGTTGCTGTGCTCCTCCCATGGAATTCTTTTTTCTCCTATTCATTTAAGCTATTAAAATATTTTTATGTTCATATGCAGCGGCAGCAACAGTTTTTAATTGAGAGATATCCTAGTATGAGAGGCACATATCCTTAACTCATGTGTGTTTCACAATTTTTAAAGGTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGAGGAGTCTGTTGTTGTATATGTGGATCATCTACTTACC</genome_strand>
        <mrna_strand>TTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTTGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCTGCTGTTGACTTATTTAGGATCCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATTGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG...................................................................................................ATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGTTCATCAAACTGTTAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAACTGCTCGTTAAATTGTATCAGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACATTTGGAGACTACTTCACTGATGTGAAGAT.......................................................................................................................................................................................................................GTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGNAGAGACTGTTGTTGTATATGTGGATCATCTACTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597891" ref_strand="-" ref_description="SGN-E597891 [73556]">
      <seq>tgtgaagatgtacattgaagaaaagatcatttaggcgttttgttgaggcttgcctgggaggagactgttgttgtatatgtggatcatctaccttacccaggtttatttgaaaagttccttacggttcattcatttgatacaggttttatttttgggctgtaacacaatttcgctgactattttatgtctcctcatggtagaaaaactatattaaagaagaaacgattgagaggatgaggcttgatgaagaggttctcatggatttctttcgggagtacattagcgtatctaaagtagagagcagagtaaggatactcagtgacttgagagaacttgcttcatctgagagccctgatactttcacactggtttacacaaatattttagaacagcaaccagactgtccgccagaagtagttgaaaagattgtgagtctgcgagaaggcataccacgaaaagacgcaaaagaggttgttcaagaatgcaaagaaatctatgaaaattctctggtagatggaaatcctccaaaaacaggttttgttttccccagggtgaagtccttatcagcggcaaaacattcaatatggcgaaagctcacctagacagctgctgcaacaaatcgtttgtttcagtcgctgagtatttcctgtacatgccttccgtcataaatgtacagattgggactatattttctgtcttcatatgatttgatttatttagctcatttgttcggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="28878" stop="33409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28963" g_stop="28971" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28972" i_stop="29186" i_length="215">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29187" g_stop="29464" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="290" r_length="281" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29465" i_stop="31839" i_length="2375">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31840" g_stop="31956" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="407" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31957" i_stop="32271" i_length="315">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32272" g_stop="32334" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="470" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32335" i_stop="32837" i_length="503">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32838" g_stop="33117" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="742" r_length="272" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E597891" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597891" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28963" e_stop="28971"/>
          <exon e_start="29187" e_stop="29464"/>
          <exon e_start="31840" e_stop="31956"/>
          <exon e_start="32272" e_stop="32334"/>
          <exon e_start="32838" e_stop="33117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGATGTGAGTTTTCTTCTGTGCTTAACTCTTATAATAGCTTTGAATGGCATGATCATGTTGCTGTGCTCCTCCCATGGAATTCTTTTTTCTCCTATTCATTTAAGCTATTAAAATATTTTTATGTTCATATGCAGCGGCAGCAACAGTTTTTAATTGAGAGATATCCTAGTATGAGAGGCACATATCCTTAACTCATGTGTGTTTCACAATTTTTAAAGGTACATTGAAG-AAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCT-GGAGGAGTCTGTTGTTGTATATGTGGATCATCTA-CTTACCCAGGTTTATTTGAAAAGTTCCTGACGGTTCATTTATTTGATACAGGTTTTATTTTTGGGTTGTAACACAATTTCACTGACTATTTTATGTCTCCTCATGGTAGAAAAACTATATTAAAGAAGAAACTATTGAGAGGATGAGGCTTGATGAAGAGGTTCTCATGGATTTCTTTCGGGAGTACATTAGCGTATCTGTAAGCCCAACAACTTTCTTATTGAGCTCTTACTATTTATTACCTGAGATATATTTTAAGTTTTGGGGAATTTTAAAACTCATGCACATATTGCACTTAATTCGTTGGTGAGTGTGGCAAATAGGTATGCATCTCAGCAAATGTGTGCATTTTTTAGTTCTTATCTTATCCCATTTACTTCTGCATTTTCAGATATGGATAAGTATTGCCTTTCTGTCTTTAGAGAGCTTGCCAAATCCTTTTTGTGAATTTCATGTTCTAGTTTATGAGTTTAATGTCTTCAAATTACAAAAGAGTCACAAATTACTATACCCCAGTCTCTTCTATCATTATTTTGGCTTAATCTAGAACTTAAACTCCAATTTCGGTGCAAGAACACTGCCTTTTTTAATTTAAACTTTTTTCAAAGGTTTATTTATTTTAATTTGCCATTGTCAGTGCCAATTTAAGGCTATTTTTTTTTGTTTTTGGGCTAAAATGGTGGCAATTCGTTCAAGACTTGTATTTTGCAAACGAGAGAATGAAATACACTAGACTTGTATTTTGCAAACGAGAGAAATACTTGGCTTAAAATAATGACAAAAGTTATTTGTGAAGTGCTTAAAAGTTATTTGAACTTGAAAGCACTTAAAATAAGCCAATCCAACACAGGCTCCAAGAGCTTTGTTGTGTCTCAAAGTTATATCAGGCTTCACAGAGTAAGGAGAATTTCATTAAAAGGCATCAAGAAGATGCAGACCAAATTGCAGAAAAGAAGATGTTTGTTCAGATACACAAACTAAGCTATAACTAAGGTCTGAAATGTTAAGAGTATAAGAAAATGATTGTGAAATACTTTATATTGTATGAGGACTTTATTTCATGTAAGTTTCCACTAGATTTTAATCCCTCAGTTATGTTTTACCATCATATCGAGGTATTTGGAGATCAAACTTCAACTTTATATGACAATATCATGTGCCAAACATGTAATTGTAAATAAGGAAAACTTGGTTACAACATTTTAGAGACGAAAAGGTCATATATATTTTATAATACATCTTCTATAGAACTTGAAGGATAGAATGATATTCTTTTTTTTTTTTTTTGGATAAGATGATGGATTTCCTAGAAGGCATCAAGAAGATGCATAAATTACAGGGCACAGAAAAGTTAAATACATTGTTAGCTCTATACTATAGGCTAATCTAAAGTTAAGGAGCTAACAAAGTTCACAAAAGCTTCAGGGGAATTGACAGGGGAGAAATTGCTCCAGGTACAAAGAGTTGTTAAAACTCTTGCCTTAAGAATGTAGCTTGGGGAAGAAGTGCCTTAAAAAACATCTATTGTTTCTTTCTGTCCAGACGCACCAAAAAATGCAAGGGATCATCTCTCATACTAGCCTTAAGGATAGAGTGAATATTATACTTCTGAAATTGATACCAAGAAGTGCTGTGTTAAAACTATAGCCTCAAGGATAGAGAACATTATACTTCTGAAATTGGATCCGAGAAGTATTATGTATTTATATTGGTTGCCTAGACATAAAGCACCAAACTCTATGACATGTTAAGAAAAAACAGAAATTAACAGCAAAAGGAGAGTCAAAATAAGTAAGCAACTAGCACGACAATTTAAGAGATTGGAAATTTTATGTAGTCATGGTACTAGGAAGAAATAAAGGAGTATACTTTACTGAATCCAGTAAATACATGCCACTAGCTGTCTTTTAATCGTTGGACTAGTTAATGAGGGTTTTGTGTGGATAGTTTCTTTGCGATCCAACAATGGATGTGTTTTGGTTGTCTCCCCTTTAGTCTTTAGATGTATTACATCTAATTAATGATTTTCTTGTCAACTGAAAAATAAGGTTACATCTAATATATCATTATGATGAATTCAATCTCAAGCTATTCTAGTGAGATCCTGACATAATTTAAAAGATTCTACTGCCCAGAGCTTTGATCTGATGATAAGAGCACAGGCATGTGATGACCTATAAAAAAAGAAAAGAGACCACAATACATGCTTGTGGATTAGCTGCACGTCACTAGTTCGAATCATAATAGAATTGCCTAGTATTTAAGTGGAAAATGTTAGATGACAGGCTCATTATGCTCAGAGTTTTGAACCACGCGCCATCTGGCCCTTGGGGATTTCTCAGTTATAGAAAAGAATAAGTTTATCCTACTTTTCCAATTGAAATTTATATATCTGCATTACTGGTGCTTGAAATCAAACAAACATGCAGTGTGTGTGTGTGTGTTTATATATATGCTGTCTTAACTTTGGTAACTACCAAGTTGTCTTTTTGTGGCGGACATTGTATGTCAATGTGACAAGGAGTACATGATGTGTACCTTTATAACTTATCTCAAATTTTCAATCCACTGCAGAAAGTGGAGAGCAGAGTAAGGATACTCAGTGACTTGAGAGAACTTGCTTCATCTGAGAGCCCTGATACTTTCACACTGGTTTACACAAATATTTTAGAACAGCAACCAGACTGTCCGGTAAGCTTTTTGGACTCTTCTCATCCATGCAGAAATATTGCAAAAACATAAGAATCATTATGAATCTACATCTCAGTTTTTAGTGTGGAAGCAGCTATTTTTTTAAAAAAGAAATTTGGGGATTGGGGAAAGGGAAATGGAGAGGGGATTACATTGTGGGGAATCGAACTCTCACCAACAAGGTGGGAGTTCAGGAAGCCAACCAACTGAGCTACTAAGATCCCCCCCGAAGCTGCTGGTTAAAATCATTATTTATTGTTTGTAGTTTGTCTCTTAACGAACCCTGTTATTGAGCATTGTTATTCTCAATTGCAGCCAGAAGTAGTTGAAAAGATTGTGAGTCTGCGGGAAGGCATACCACGAAAAGACGCAAAAGAGGTATATATGTGTTATCTAAGTGGCGCACATGTTCAAAATTTTATTACAGAATTGAATTATTTGAGAAAGTCTACTCATCAACTTACCAAAAATAAGATGTTGCTACTCTTAGCATTTCTTTTCTACATTAAATCACTGCCAATGCAGTAAATGAAGTTATCATGTTATTTTAGTAAGTTGTGATTATGTATCATTGCTTTGGGGATACATCGTTTTTTTTCTTCTTGTTTCACCATACTTTTGATTAATATCCGTTCTAGCTATAAATATATCCATTATGTATGAAGCAGAAACTTGTCAGTTGTGGGTGTTCTTTATGCCCAAAACCCGTGTTTGCAGACTTCGCGAAAGTATTTGTCTATCCCTTGTCGACATTTATTTCCAGAGCAGTGATATTGCTCTTGAATCTCATGCATTTACAGCATCCCCATGTTCATCGCCTTTGAGAAGATAACTTGTTTTTTCTTTATTGCTTTCTTGATGGGGATTTCTTTATGATATAGGTTGTTCAAGAATGCAAAGAAATCTACGTAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTTCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACAGCTGCTGCTGCAACAAATCGTTTGTTTTTTCACTCGCTGAATATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCCGTCTTCATATGATTTGATTTATCTTTAGCTCATTTATTCGGATTGTAGTT</genome_strand>
        <mrna_strand>TGTGAAGAT.......................................................................................................................................................................................................................GTACATTGAAGAAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGGAGGAGACTGTTGTTGTATATGTGGATCATCTACCTTACCCAGGTTTATTTGAAAAGTTCCTTACGGTTCATTCATTTGATACAGGTTTTATTTTTGGGCTGTAACACAATTTCGCTGACTATTTTATGTCTCCTCATGGTAGAAAAACTATATTAAAGAAGAAACGATTGAGAGGATGAGGCTTGATGAAGAGGTTCTCATGGATTTCTTTCGGGAGTACATTAGCGTATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAGAGAGCAGAGTAAGGATACTCAGTGACTTGAGAGAACTTGCTTCATCTGAGAGCCCTGATACTTTCACACTGGTTTACACAAATATTTTAGAACAGCAACCAGACTGTCCG...........................................................................................................................................................................................................................................................................................................................CCAGAAGTAGTTGAAAAGATTGTGAGTCTGCGAGAAGGCATACCACGAAAAGACGCAAAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCAAGAATGCAAAGAAATCTATGAAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTCCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACA---GCTGCTGCAACAAATCGTTTG---TTTCAGTCGCTGAGTATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCTGTCTTCATATGATTTGATTTA--TTTAGCTCATTTGTTCGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430176" ref_strand="-" ref_description="SGN-E430176 [STM-53-C6]">
      <seq>aaatatttagaacagcaaccagactgtccgccagaagtagttgaaaagattgtgagtctgcgagaaggcataccacgaaaagacgcaaaagaggttgttcaagaatgcaaagaaatctatgaaaattctctggtagatggaaatcctccaaaaacaggttttgttttccccagggtgaagtccttatcagcggcaaaacattcaatatggcgaaagctcacctagacagctgctgcaacaaattgtttgtttcagtcgctgagtatttcctgtacatgccttccgtcataaatgtacagattgggactatattttctttcttcatatgatttgatttatttagctcatctgttcggattgtagttgcctttgccaaatatgtattcattccttttaccattttagctactaccaattttgcaaccgttagggtttcagcgtactcgctcgggttctacttgtaatgattgttaaataataggtcagctgagttcattctcaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="31626" stop="33552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31926" g_stop="31956" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31957" i_stop="32271" i_length="315">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32272" g_stop="32334" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="93" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32335" i_stop="32837" i_length="503">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32838" g_stop="33235" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="481" r_length="388" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="512"/>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E430176" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430176" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31926" e_stop="31956"/>
          <exon e_start="32272" e_stop="32334"/>
          <exon e_start="32838" e_stop="33235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTTAGAACAGCAACCAGACTGTCCGGTAAGCTTTTTGGACTCTTCTCATCCATGCAGAAATATTGCAAAAACATAAGAATCATTATGAATCTACATCTCAGTTTTTAGTGTGGAAGCAGCTATTTTTTTAAAAAAGAAATTTGGGGATTGGGGAAAGGGAAATGGAGAGGGGATTACATTGTGGGGAATCGAACTCTCACCAACAAGGTGGGAGTTCAGGAAGCCAACCAACTGAGCTACTAAGATCCCCCCCGAAGCTGCTGGTTAAAATCATTATTTATTGTTTGTAGTTTGTCTCTTAACGAACCCTGTTATTGAGCATTGTTATTCTCAATTGCAGCCAGAAGTAGTTGAAAAGATTGTGAGTCTGCGGGAAGGCATACCACGAAAAGACGCAAAAGAGGTATATATGTGTTATCTAAGTGGCGCACATGTTCAAAATTTTATTACAGAATTGAATTATTTGAGAAAGTCTACTCATCAACTTACCAAAAATAAGATGTTGCTACTCTTAGCATTTCTTTTCTACATTAAATCACTGCCAATGCAGTAAATGAAGTTATCATGTTATTTTAGTAAGTTGTGATTATGTATCATTGCTTTGGGGATACATCGTTTTTTTTCTTCTTGTTTCACCATACTTTTGATTAATATCCGTTCTAGCTATAAATATATCCATTATGTATGAAGCAGAAACTTGTCAGTTGTGGGTGTTCTTTATGCCCAAAACCCGTGTTTGCAGACTTCGCGAAAGTATTTGTCTATCCCTTGTCGACATTTATTTCCAGAGCAGTGATATTGCTCTTGAATCTCATGCATTTACAGCATCCCCATGTTCATCGCCTTTGAGAAGATAACTTGTTTTTTCTTTATTGCTTTCTTGATGGGGATTTCTTTATGATATAGGTTGTTCAAGAATGCAAAGAAATCTACGTAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTTCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACAGCTGCTGCTGCAACAAATCGTTTGTTTTTTCACTCGCTGAATATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCCGTCTTCATATGATTTGATTTATCTTTAGCTCATTTATTCGGATTGTAGTTGCCTTTGCCAAATATGTATTCATTACTTTTTTACCATTTTAGCTACTACCAATTTTGCAACCGCTAGGGTTACAGCGCACTCGCTCCGGTTCTACTTGTAATGATTGTTAAATAATAG</genome_strand>
        <mrna_strand>AAATA-TTTAGAACAGCAACCAGACTGTCCG...........................................................................................................................................................................................................................................................................................................................CCAGAAGTAGTTGAAAAGATTGTGAGTCTGCGAGAAGGCATACCACGAAAAGACGCAAAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCAAGAATGCAAAGAAATCTATGAAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTCCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACA---GCTGCTGCAACAAATTGTTTG---TTTCAGTCGCTGAGTATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCTTTCTTCATATGATTTGATTTA--TTTAGCTCATCTGTTCGGATTGTAGTTGCCTTTGCCAAATATGTATTCATT-C-CTTTTACCATTTTAGCTACTACCAATTTTGCAACCGTTAGGGTTTCAGCGTACTCGCTCGGGTTCTACTTGTAATGATTGTTAAATAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464563" ref_strand="+" ref_description="SGN-E464563 [cPRO-18-I24]">
      <seq>gaaaattctctggtagatggaaatcctccaaaaacaggttttgttttccccagggtgaagtccttatcagcggcaaaacattcaatatggcgaaagctcacctagacagctgctgcaacaaattgtttgtttcagtcgctgagtatttcctgtacatgccttccgtcataaatgtacagattgggactatattttctttcttcatatgatttgatttatttagctcatctgttcggattgtagttgcctttgccaaatatgtattcattccttttaccattttagctactaccaattttgcaaccgttagggtttcagcgtactcgctcgggttctacttgtaatgattgttaaataataggtcagctgagttcattctctctctctctgtgttgattcttgaaatgtttcaacaatgaacagatcgatcccttttgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="32565" stop="33569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32865" g_stop="33317" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-E464563" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32865" e_stop="33317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTTCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACAGCTGCTGCTGCAACAAATCGTTTGTTTTTTCACTCGCTGAATATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCCGTCTTCATATGATTTGATTTATCTTTAGCTCATTTATTCGGATTGTAGTTGCCTTTGCCAAATATGTATTCATTACTTTTTTACCATTTTAGCTACTACCAATTTTGCAACCGCTAGGGTTACAGCGCACTCGCTCCGGTTCTACTTGTAATGATTGTTAAATAATAGGTCAGCTGA-TTCA-T-TCT-TCTCTC----TTGATTCTTGAAATGTTTCAACTATGAACAGATCGATCCCTTTTGTTGTAGCATAAAGA</genome_strand>
        <mrna_strand>GAAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTCCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACAGCTGC---TGCAACAAATTGTTTG---TTTCAGTCGCTGAGTATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCTTTCTTCATATGATTTGATTTA--TTTAGCTCATCTGTTCGGATTGTAGTTGCCTTTGCCAAATATGTATTCATT-C-CTTTTACCATTTTAGCTACTACCAATTTTGCAACCGTTAGGGTTTCAGCGTACTCGCTCGGGTTCTACTTGTAATGATTGTTAAATAATAGGTCAGCTGAGTTCATTCTCTCTCTCTCTGTGTTGATTCTTGAAATGTTTCAACAATGAACAGATCGATCCCTTTTGTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9030" PGL_stop="10358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9030" e_stop="9113"/>
            <exon e_start="9195" e_stop="9323"/>
            <exon e_start="9875" e_stop="10358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9030" e_stop="9113" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9114" i_stop="9194" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9195" e_stop="9323" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9324" i_stop="9874" i_length="551"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="9875" e_stop="10358" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9030" stop="9113"/>
              <exon start="9195" stop="9323"/>
              <exon start="9875" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9031" stop="9113"/>
              <exon start="9195" stop="9323"/>
              <exon start="9875" stop="10190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAG : GGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATG : ACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCACTTCATCACCACCCATCCTCCCCGATCTCCCGAATTTCGACGATACGAACGCATCGTTTAATTTCACTAGGTCATTAAAAAGCCTAGCCGATAAAGGACACCCTATTGACGTACCATTAAACGTTACAACCAATTTATTGTTCACATTTTCCGTAAATACCTTACCTTG</gDNA_template>
            <first_frame> L  M  V  H  L  L  Y  V  Q  Q  I  K  L  I  I  L  F  L  D  L  L  L  K  F  P  S  Y  *  :  G  S  G  G  K  V  M  Y  K  Q  L  *  M  S  F  L  Q  V  E  Q  M  Q  I  N  L  M  H  F  L  *  M  V  N  Q  E  I  Y  I  L  A  Q  Q  M  :  T  H  S  N  *  R  W  R  K  I  R  H  I  C  S  E  L  L  T  P  *  *  I  I  S  C  F  S  P  L  Q  I  T  N  S  P  S  *  E  L  T  V  R  T  L  N  R  S  S  Q  I  T  S  Q  F  P  R  V  K  L  L  M  F  Y  S  K  Q  I  K  T  L  T  T  I  I  W  A  R  K  P  T  I  A  *  S  E  L  I  L  T  T  *  P  P  P  P  S  F  S  I  V  E  I  T  P  L  H  H  H  P  S  S  P  I  S  R  I  S  T  I  R  T  H  R  L  I  S  L  G  H  *  K  A  *  P  I  K  D  T  L  L  T  Y  H  *  T  L  Q  P  I  Y  C  S  H  F  P  *  I  P  Y  L  </first_frame>
            <second_frame>  *  W  C  T  Y  Y  T  S  S  K  *  N  *  L  S  F  S  *  T  Y  C  *  N  S  H  H  I  R :   G  V  V  E  K  *  C  T  S  S  C  E  *  V  S  Y  K  W  S  R  C  K  *  I  *  C  I  S  Y  K  W  S  T  R  R  F  I  S  L  L  N  K  * :   H  I  Q  T  N  G  G  E  K  *  D  I  F  A  Q  N  C  *  R  R  N  E  *  S  H  V  F  L  R  C  K  S  P  T  H  R  R  R  N  *  R  C  V  R  *  T  V  Q  V  K  L  H  H  N  F  P  G  *  N  Y  *  C  F  T  R  S  K  S  K  P  *  P  L  L  Y  G  R  E  S  L  Q  *  R  S  R  S  *  F  *  Q  H  N  H  H  R  H  R  S  V  S  W  K  L  L  H  F  I  T  T  H  P  P  R  S  P  E  F  R  R  Y  E  R  I  V  *  F  H  *  V  I  K  K  P  S  R  *  R  T  P  Y  *  R  T  I  K  R  Y  N  Q  F  I  V  H  I  F  R  K  Y  L  T  L </second_frame>
            <third_frame>   N  G  A  L  I  I  R  P  A  N  K  T  N  Y  P  F  P  R  P  T  A  E  I  P  I  I  L   : G  E  W  W  K  S  D  V  Q  A  V  V  N  E  F  L  T  S  G  A  D  A  N  K  S  D  A  F  L  I  N  G  Q  P  G  D  L  Y  P  C  S  T  N   : D  T  F  K  L  T  V  E  K  N  K  T  Y  L  L  R  I  V  N  A  V  M  N  N  L  M  F  F  S  V  A  N  H  Q  L  T  V  V  G  T  D  G  A  Y  V  K  P  F  K  S  N  Y  I  T  I  S  P  G  E  T  I  D  V  L  L  E  A  N  Q  N  P  N  H  Y  Y  M  G  A  K  A  Y  N  S  V  V  G  V  D  F  N  N  I  T  T  T  A  I  V  Q  Y  R  G  N  Y  S  T  S  S  P  P  I  L  P  D  L  P  N  F  D  D  T  N  A  S  F  N  F  T  R  S  L  K  S  L  A  D  K  G  H  P  I  D  V  P  L  N  V  T  T  N  L  L  F  T  F  S  V  N  T  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9032" stop="9113"/>
                    <exon start="9195" stop="9323"/>
                    <exon start="9875" stop="10356"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGALIIRPANKTNYPFPRPTAEIPIILGEWWKSDVQAVVNEFLTSGADANKSDAFLINGQPGDLYPCSTNDTFKLTVEKNKTYLLRIVNAVMNNLMFFSVANHQLTVVGTDGAYVKPFKSNYITISPGETIDVLLEANQNPNHYYMGAKAYNSVVGVDFNNITTTAIVQYRGNYSTSSPPILPDLPNFDDTNASFNFTRSLKSLADKGHPIDVPLNVTTNLLFTFSVNTLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10464" PGL_stop="11931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10464" e_stop="10819"/>
            <exon e_start="11558" e_stop="11931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10464" e_stop="10819" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11558" e_stop="11931" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10464" stop="10819"/>
              <exon start="11558" stop="11931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10466" stop="10819"/>
              <exon start="11558" stop="11764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10644" stop="10819"/>
              <exon start="11558" stop="11878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10644" stop="10819"/>
              <exon start="11558" stop="11878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10644" stop="10819"/>
              <exon start="11558" stop="11875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433591" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTCAAGGGGTTTATCGAGATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAG : GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATAGCTTATTGGAGCTATATTTAATCATGATAATAATAATGTAAATCTTGTTTTAA</gDNA_template>
            <first_frame> K  Y  S  R  G  L  S  R  *  I  S  *  F  S  A  F  K  F  *  F  Y  G  *  F  S  T  R  G  I  T  T  S  R  S  *  N  G  G  S  C  S  *  I  W  N  T  C  R  D  C  V  T  R  N  *  F  I  R  W  S  *  S  S  N  S  F  T  W  I  *  F  L  C  C  W  I  W  I  W  K  F  *  Q  R  *  R  P  F  E  L  *  S  C  *  S  T  S  S  E  Y  Y  C  C  C  *  K  W  M  G  C  H  *  V  Q  S  *  *  S  R :   S  M  V  Y  A  L  S  F  R  T  S  R  K  L  G  N  G  N  G  I  Y  C  E  R  W  K  R  L  R  R  K  I  A  S  S  S  S  *  Y  A  S  M  L  N  L  N  I  P  H  I  *  L  *  F  I  F  N  F  W  N  I  L  *  R  G  E  K  E  K  M  Y  L  L  I  D  F  I  N  S  L  L  *  Y  I  *  L  G  Y  I  Y  L  Y  L  L  F  F  F  F  M  *  *  N  S  Y  F  I  *  L  I  G  A  I  F  N  H  D  N  N  N  V  N  L  V  L  </first_frame>
            <second_frame>  N  I  Q  G  V  Y  R  D  E  F  P  S  F  P  P  L  N  F  N  F  T  G  D  S  L  P  V  E  L  Q  R  P  D  R  R  T  E  V  H  V  L  E  Y  G  T  H  V  E  I  V  L  Q  G  T  S  L  L  G  G  V  D  H  P  I  H  L  H  G  Y  S  F  Y  V  V  G  S  G  F  G  N  F  D  K  D  K  D  P  L  N  Y  N  L  V  D  P  P  L  Q  N  T  I  A  V  V  R  N  G  W  A  A  I  R  F  K  A  D  N  P   : G  V  W  F  M  H  C  H  L  E  R  H  V  S  W  G  M  E  M  A  F  I  V  K  D  G  K  G  S  E  E  K  L  L  P  P  P  P  D  M  P  Q  C  *  I  *  I  Y  L  T  F  N  Y  N  L  F  L  I  F  G  T  Y  S  N  E  G  R  K  K  K  C  I  C  L  L  I  L  L  I  H  Y  Y  D  I  Y  S  L  D  I  Y  I  C  I  C  S  S  F  F  L  C  N  K  I  H  I  L  Y  S  L  L  E  L  Y  L  I  M  I  I  I  M  *  I  L  F  * </second_frame>
            <third_frame>   I  F  K  G  F  I  E  M  N  F  L  V  F  R  L  *  I  L  I  L  R  V  I  L  Y  P  W  N  Y  N  V  P  I  V  E  R  R  F  M  F  L  N  M  E  H  M  *  R  L  C  Y  K  E  L  V  Y  *  V  E  L  I  I  Q  F  I  Y  M  D  I  V  F  M  L  L  D  L  D  L  E  I  L  T  K  I  K  T  L  *  I  I  I  L  L  I  H  L  F  R  I  L  L  L  L  L  E  M  D  G  L  P  L  G  S  K  L  I  I  Q  :  E  Y  G  L  C  I  V  I  *  N  V  T  *  V  G  E  W  K  W  H  L  L  *  K  M  E  K  A  Q  K  K  N  C  F  L  L  L  L  I  C  L  N  V  E  F  K  Y  T  S  H  L  T  I  I  Y  F  *  F  L  E  H  T  L  T  R  G  E  R  K  N  V  F  A  Y  *  F  Y  *  F  I  T  M  I  Y  I  A  W  I  Y  I  F  V  F  A  L  L  F  F  Y  V  I  K  F  I  F  Y  I  A  Y  W  S  Y  I  *  S  *  *  *  *  C  K  S  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10465" stop="10819"/>
                    <exon start="11558" stop="11688"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIQGVYRDEFPSFPPLNFNFTGDSLPVELQRPDRRTEVHVLEYGTHVEIVLQGTSLLGGVDHPIHLHGYSFYVVGSGFGNFDKDKDPLNYNLVDPPLQNTIAVVRNGWAAIRFKADNPGVWFMHCHLERHVSWGMEMAFIVKDGKGSEEKLLPPPPDMPQC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11695" stop="11919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLTFNYNLFLIFGTYSNEGRKKKCICLLILLIHYYDIYSLDIYICICSSFFLCNKIHILYSLLELYLIMIIIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14183" PGL_stop="16525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14183" e_stop="14406"/>
            <exon e_start="15165" e_stop="15203"/>
            <exon e_start="15428" e_stop="15516"/>
            <exon e_start="15596" e_stop="15686"/>
            <exon e_start="16279" e_stop="16368"/>
            <exon e_start="16464" e_stop="16525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14183" e_stop="14406" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14407" i_stop="15164" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15165" e_stop="15203" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15204" i_stop="15427" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15428" e_stop="15516" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.978">
            <gDNA_intron_boundary i_start="15517" i_stop="15595" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15596" e_stop="15686" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15687" i_stop="16278" i_length="592"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16279" e_stop="16368" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="16369" i_stop="16463" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="16464" e_stop="16525" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14183" stop="14406"/>
              <exon start="15165" stop="15203"/>
              <exon start="15428" stop="15516"/>
              <exon start="15596" stop="15686"/>
              <exon start="16279" stop="16368"/>
              <exon start="16464" stop="16525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAGATCCCTATATACTCCATCTTCAATTTCAATTCAAACATTCAAAATTTTCTCAGTGAATTTAGCTGTGAGATTTGTAAATAGTTGCGAAAATGATGGCTGATGATCTCGGCGTTGAGGCGAAGGAAGCCTCCGTTCGTGAGGTCGCTAAGCTATTGCCTTTACCTGAGCTTTTACAGTCTATTTCCTCGATCAAAGCCGATTATATTGCTCGTCAACAG : GCAAATGATGCACAACTTAGTACAATGGTCGCTGAACAG : GTTGAGCAAGCTCAAGGTGGTCTGCAATCACTTTCTTTATCTCAGAAGACTATAAATCAGCTCCGAGAAAACTTCCTTTCTATTGAAAA : GCTTTGTCAAGAGTGCCAAACTTTAATCGAAAATCATGACCAGATAAAAATTCTCAGTAACACCAGGAATAACTTGAACACTACTCTGAAG : GATGTGGAGGGGATGATGTCAATTTCGGTAGAGGCGTCTGAAGCACGGGATTCTCTTAGAGATGATAAGGAACTAATTAACACCTATGAA : AGGTTAACTGCTCTTGATGGAAAGCGAAGGTTCGCGCTAGCTGCTGCAGGGTCTCATAAAGA</gDNA_template>
            <first_frame> F  E  I  P  I  Y  S  I  F  N  F  N  S  N  I  Q  N  F  L  S  E  F  S  C  E  I  C  K  *  L  R  K  *  W  L  M  I  S  A  L  R  R  R  K  P  P  F  V  R  S  L  S  Y  C  L  Y  L  S  F  Y  S  L  F  P  R  S  K  P  I  I  L  L  V  N  R :   Q  M  M  H  N  L  V  Q  W  S  L  N  R :   L  S  K  L  K  V  V  C  N  H  F  L  Y  L  R  R  L  *  I  S  S  E  K  T  S  F  L  L  K   : S  F  V  K  S  A  K  L  *  S  K  I  M  T  R  *  K  F  S  V  T  P  G  I  T  *  T  L  L  *  R :   M  W  R  G  *  C  Q  F  R  *  R  R  L  K  H  G  I  L  L  E  M  I  R  N  *  L  T  P  M  K :   G  *  L  L  L  M  E  S  E  G  S  R  *  L  L  Q  G  L  I  K  </first_frame>
            <second_frame>  S  R  S  L  Y  T  P  S  S  I  S  I  Q  T  F  K  I  F  S  V  N  L  A  V  R  F  V  N  S  C  E  N  D  G  *  *  S  R  R  *  G  E  G  S  L  R  S  *  G  R  *  A  I  A  F  T  *  A  F  T  V  Y  F  L  D  Q  S  R  L  Y  C  S  S  T   : G  K  *  C  T  T  *  Y  N  G  R  *  T   : G  *  A  S  S  R  W  S  A  I  T  F  F  I  S  E  D  Y  K  S  A  P  R  K  L  P  F  Y  *  K  :  A  L  S  R  V  P  N  F  N  R  K  S  *  P  D  K  N  S  Q  *  H  Q  E  *  L  E  H  Y  S  E   : G  C  G  G  D  D  V  N  F  G  R  G  V  *  S  T  G  F  S  *  R  *  *  G  T  N  *  H  L  *   : K  V  N  C  S  *  W  K  A  K  V  R  A  S  C  C  R  V  S  *  R </second_frame>
            <third_frame>   R  D  P  Y  I  L  H  L  Q  F  Q  F  K  H  S  K  F  S  Q  *  I  *  L  *  D  L  *  I  V  A  K  M  M  A  D  D  L  G  V  E  A  K  E  A  S  V  R  E  V  A  K  L  L  P  L  P  E  L  L  Q  S  I  S  S  I  K  A  D  Y  I  A  R  Q  Q  :  A  N  D  A  Q  L  S  T  M  V  A  E  Q  :  V  E  Q  A  Q  G  G  L  Q  S  L  S  L  S  Q  K  T  I  N  Q  L  R  E  N  F  L  S  I  E  K :   L  C  Q  E  C  Q  T  L  I  E  N  H  D  Q  I  K  I  L  S  N  T  R  N  N  L  N  T  T  L  K  :  D  V  E  G  M  M  S  I  S  V  E  A  S  E  A  R  D  S  L  R  D  D  K  E  L  I  N  T  Y  E  :  R  L  T  A  L  D  G  K  R  R  F  A  L  A  A  A  G  S  H  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14266" stop="14406"/>
                    <exon start="15165" stop="15203"/>
                    <exon start="15428" stop="15516"/>
                    <exon start="15596" stop="15686"/>
                    <exon start="16279" stop="16368"/>
                    <exon start="16464" stop="16523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVAKMMADDLGVEAKEASVREVAKLLPLPELLQSISSIKADYIARQQANDAQLSTMVAEQVEQAQGGLQSLSLSQKTINQLRENFLSIEKLCQECQTLIENHDQIKILSNTRNNLNTTLKDVEGMMSISVEASEARDSLRDDKELINTYERLTALDGKRRFALAAAGSHK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17080" PGL_stop="33317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17080" e_stop="17172"/>
            <exon e_start="17833" e_stop="17859"/>
            <exon e_start="18084" e_stop="18191"/>
            <exon e_start="18296" e_stop="18458"/>
            <exon e_start="19583" e_stop="19638"/>
            <exon e_start="20363" e_stop="20471"/>
            <exon e_start="21555" e_stop="21695"/>
            <exon e_start="21784" e_stop="21963"/>
            <exon e_start="22989" e_stop="23072"/>
            <exon e_start="23172" e_stop="23258"/>
            <exon e_start="24681" e_stop="24725"/>
            <exon e_start="26768" e_stop="26846"/>
            <exon e_start="28902" e_stop="28971"/>
            <exon e_start="29187" e_stop="29464"/>
            <exon e_start="31840" e_stop="31956"/>
            <exon e_start="32272" e_stop="32334"/>
            <exon e_start="32838" e_stop="33317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="0.986" e_score="0.975"/>
          <exon-intron don_prob="0.995" acc_prob="0.931" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="0.957"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="0.984"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="17080" e_stop="17172" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17173" i_stop="17832" i_length="660"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17833" e_stop="17859" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18084" e_stop="18191" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18296" e_stop="18458" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.750" acc_prob="0.899">
            <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19583" e_stop="19638" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20363" e_stop="20471" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.889" acc_prob="0.930">
            <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21555" e_stop="21695" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21784" e_stop="21963" e_length="180"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22989" e_stop="23072" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23073" i_stop="23171" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="23172" e_stop="23258" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="23259" i_stop="24680" i_length="1422"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="24681" e_stop="24725" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24726" i_stop="26767" i_length="2042"/>
          </intron>
          <exon e_serial="12" e_score="0.975">
            <gDNA_exon_boundary e_start="26768" e_stop="26846" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.651" acc_prob="0.986">
            <gDNA_intron_boundary i_start="26847" i_stop="28901" i_length="2055"/>
          </intron>
          <exon e_serial="13" e_score="0.986">
            <gDNA_exon_boundary e_start="28902" e_stop="28971" e_length="70"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.931">
            <gDNA_intron_boundary i_start="28972" i_stop="29186" i_length="215"/>
          </intron>
          <exon e_serial="14" e_score="0.957">
            <gDNA_exon_boundary e_start="29187" e_stop="29464" e_length="278"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="29465" i_stop="31839" i_length="2375"/>
          </intron>
          <exon e_serial="15" e_score="0.991">
            <gDNA_exon_boundary e_start="31840" e_stop="31956" e_length="117"/>
          </exon>
          <intron i_serial="15" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31957" i_stop="32271" i_length="315"/>
          </intron>
          <exon e_serial="16" e_score="0.984">
            <gDNA_exon_boundary e_start="32272" e_stop="32334" e_length="63"/>
          </exon>
          <intron i_serial="16" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32335" i_stop="32837" i_length="503"/>
          </intron>
          <exon e_serial="17" e_score="0.901">
            <gDNA_exon_boundary e_start="32838" e_stop="33317" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17080" stop="17172"/>
              <exon start="17833" stop="17859"/>
              <exon start="18084" stop="18191"/>
              <exon start="18296" stop="18303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17842" stop="17859"/>
              <exon start="18084" stop="18191"/>
              <exon start="18296" stop="18458"/>
              <exon start="19583" stop="19638"/>
              <exon start="20363" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18390" stop="18458"/>
              <exon start="19583" stop="19638"/>
              <exon start="20363" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19599" stop="19638"/>
              <exon start="20363" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
              <exon start="23172" stop="23258"/>
              <exon start="24681" stop="24725"/>
              <exon start="26768" stop="26846"/>
              <exon start="28902" stop="28971"/>
              <exon start="29187" stop="29234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
              <exon start="23172" stop="23224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21625" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
              <exon start="23172" stop="23258"/>
              <exon start="24681" stop="24725"/>
              <exon start="26768" stop="26846"/>
              <exon start="28902" stop="28971"/>
              <exon start="29187" stop="29271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28971"/>
              <exon start="29187" stop="29464"/>
              <exon start="31840" stop="31956"/>
              <exon start="32272" stop="32334"/>
              <exon start="32838" stop="33117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31926" stop="31956"/>
              <exon start="32272" stop="32334"/>
              <exon start="32838" stop="33235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430176" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32865" stop="33317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATATTTTGAAGATGTGGATAGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTAAGGATAG : CCCACAAACACTCGTCCGTGCTATAAG : GGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA : AAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG : ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG : ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG : GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG : AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAG : GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG : ATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAG : GTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAG : GAAGCTGTTCATCAAACTGTCAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAATTGCTCGTTAAATTGTATCAGAAAG : ATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACGTTTGGAGACTACTTCACTGATGTGAAGAT : GTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGAGGAGTCTGTTGTTGTATATGTGGATCATCTACTTACCCAGGTTTATTTGAAAAGTTCCTGACGGTTCATTTATTTGATACAGGTTTTATTTTTGGGTTGTAACACAATTTCACTGACTATTTTATGTCTCCTCATGGTAGAAAAACTATATTAAAGAAGAAACTATTGAGAGGATGAGGCTTGATGAAGAGGTTCTCATGGATTTCTTTCGGGAGTACATTAGCGTATCT : AAAGTGGAGAGCAGAGTAAGGATACTCAGTGACTTGAGAGAACTTGCTTCATCTGAGAGCCCTGATACTTTCACACTGGTTTACACAAATATTTTAGAACAGCAACCAGACTGTCCG : CCAGAAGTAGTTGAAAAGATTGTGAGTCTGCGGGAAGGCATACCACGAAAAGACGCAAAAGAG : GTTGTTCAAGAATGCAAAGAAATCTACGTAAATTCTCTGGTAGATGGAAATCCTCCAAAAACAGGTTTTGTTTTTCCCAGGGTGAAGTCCTTATCAGCGGCAAAACATTCAATATGGCGAAAGCTCACCTAGACAGCTGCTGCTGCAACAAATCGTTTGTTTTTTCACTCGCTGAATATTTCCTGTACATGCCTTCCGTCATAAATGTACAGATTGGGACTATATTTTCCGTCTTCATATGATTTGATTTATCTTTAGCTCATTTATTCGGATTGTAGTTGCCTTTGCCAAATATGTATTCATTACTTTTTTACCATTTTAGCTACTACCAATTTTGCAACCGCTAGGGTTACAGCGCACTCGCTCCGGTTCTACTTGTAATGATTGTTAAATAATAGGTCAGCTGATTCATTCTTCTCTCTTGATTCTTGAAATGTTTCAACTATGAACAGATCGATCCCTTTTGTTGTAGCATAAAGA</gDNA_template>
            <first_frame> R  I  F  *  R  C  G  *  N  M  G  D  V  *  E  D  T  V  G  P  Y  C  K  F  L  Q  T  G  *  G  *  :  P  T  N  T  R  P  C  Y  K  :  G  C  *  N  A  R  N  P  R  S  T  T  R  R  R  S  S  *  G  *  G  R  W  C  Y  G  F  S  R  K  S  S  K  K  C  Q  :  K  N  N  F  F  *  K  S  H  T  A  E  V  E  G  S  G  K  R  L  Q  G  Q  M  L  *  K  Y  K  E  V  C  *  S  T  F  *  Q  I  A  R  *  A  R  P  *  N  S  Y  R  G  S  *  S   : D  R  R  R  A  W  R  D  I  *  L  C  G  S  L  F  S  S  K  :  I  *  S  F  P  A  H  G  K  S  L  Y  R  E  I  C  S  V  A  E  K  D  E  *  S  S  *  *  Y  D  K  Y  R  D  F  K   : G  N  R  L  G  G  *  L  P  R  K  S  N  *  A  W  S  *  *  F  F  S  S  S  L  L  R  E  W  C  N  G  S  S  H  E  C  V  C  *  E  N  A  S  Y  N  K   : E  M  V  L  E  Y  P  R  G  R  Q  S  T  A  T  *  K  D  *  *  W  E  T  I  Y  T  C  R  R  *  L  I  *  D  S  G  G  A  G  A  N  C  A  R  K  *  H  *  C  H  V  I  Q  D  R  F  G  S  H  S   : G  N  D  *  F  S  S  S  *  E  E  E  I  G  G  T  C  F  *  N  W  S  G  I  P  M  C  N   : D  *  Q  Q  S  S  L  L  *  S  R  D  G  A  K  F  *  Y  S  *  S  S  P  T  E  L  C  *  A   : G  *  F  *  G  H  L  Q  R  V  S  R  G  C  K   : G  S  C  S  S  N  C  Q  C  Y  L  *  R  S  R  S  R  G  I  A  R  *  I  V  S  E  R :   L  A  G  R  T  G  Y  R  V  P  S  C  N  V  W  R  L  L  H  *  C  E  D  :  V  H  *  R  K  I  I  *  A  F  C  *  G  L  P  G  G  V  C  C  C  I  C  G  S  S  T  Y  P  G  L  F  E  K  F  L  T  V  H  L  F  D  T  G  F  I  F  G  L  *  H  N  F  T  D  Y  F  M  S  P  H  G  R  K  T  I  L  K  K  K  L  L  R  G  *  G  L  M  K  R  F  S  W  I  S  F  G  S  T  L  A  Y  L :   K  W  R  A  E  *  G  Y  S  V  T  *  E  N  L  L  H  L  R  A  L  I  L  S  H  W  F  T  Q  I  F  *  N  S  N  Q  T  V  R :   Q  K  *  L  K  R  L  *  V  C  G  K  A  Y  H  E  K  T  Q  K  R :   L  F  K  N  A  K  K  S  T  *  I  L  W  *  M  E  I  L  Q  K  Q  V  L  F  F  P  G  *  S  P  Y  Q  R  Q  N  I  Q  Y  G  E  S  S  P  R  Q  L  L  L  Q  Q  I  V  C  F  F  T  R  *  I  F  P  V  H  A  F  R  H  K  C  T  D  W  D  Y  I  F  R  L  H  M  I  *  F  I  F  S  S  F  I  R  I  V  V  A  F  A  K  Y  V  F  I  T  F  L  P  F  *  L  L  P  I  L  Q  P  L  G  L  Q  R  T  R  S  G  S  T  C  N  D  C  *  I  I  G  Q  L  I  H  S  S  L  L  I  L  E  M  F  Q  L  *  T  D  R  S  L  L  L  *  H  K   </first_frame>
            <second_frame>  E  Y  F  E  D  V  D  R  T  W  E  T  F  E  K  T  L  W  A  H  I  A  N  F  S  K  L  A  K  D  S :   P  Q  T  L  V  R  A  I  R :   V  V  E  M  Q  E  I  L  D  Q  Q  L  A  E  E  A  A  E  A  E  G  G  G  A  M  A  S  V  A  N  P  R  R  N  A  K :   K  T  T  S  S  K  N  L  T  Q  Q  K  L  K  A  Q  G  K  G  Y  K  D  K  C  Y  E  S  I  R  K  S  V  E  A  R  F  D  K  L  L  D  E  Q  D  L  K  T  A  I  E  E  A  R  V  :  I  G  E  E  L  G  E  I  Y  D  Y  V  A  P  C  F  P  P  R :   Y  E  V  F  Q  L  M  V  N  L  Y  T  E  R  F  V  Q  W  L  R  K  M  S  D  Q  A  S  N  M  T  N  I  E  I  L  K  :  V  T  G  W  V  V  D  Y  Q  E  S  L  I  E  L  G  V  D  D  S  L  A  Q  V  C  S  E  S  G  A  M  D  P  L  M  N  A  Y  V  E  R  M  Q  A  T  T  K  :  K  W  Y  L  N  I  L  E  A  D  K  V  Q  P  P  K  K  T  D  D  G  K  L  Y  T  P  A  A  V  D  L  F  R  I  L  G  E  Q  V  Q  I  V  R  E  N  S  T  D  V  M  L  Y  R  I  A  L  A  L  I  Q  :  V  M  I  D  F  Q  A  A  E  R  K  R  L  E  E  P  A  S  E  I  G  L  E  S  L  C  A  M  :  I  N  N  N  L  R  C  Y  D  L  A  M  E  L  S  S  S  T  L  E  A  L  P  Q  N  Y  A  E  Q  :  V  N  F  E  D  T  C  K  G  F  L  E  V  A  K  :  E  A  V  H  Q  T  V  S  V  I  F  E  D  P  G  V  E  E  L  L  V  K  L  Y  Q  K   : D  W  L  E  G  Q  V  T  E  F  L  V  A  T  F  G  D  Y  F  T  D  V  K  M :   Y  I  E  E  R  S  F  R  R  F  V  E  A  C  L  E  E  S  V  V  V  Y  V  D  H  L  L  T  Q  V  Y  L  K  S  S  *  R  F  I  Y  L  I  Q  V  L  F  L  G  C  N  T  I  S  L  T  I  L  C  L  L  M  V  E  K  L  Y  *  R  R  N  Y  *  E  D  E  A  *  *  R  G  S  H  G  F  L  S  G  V  H  *  R  I   : *  S  G  E  Q  S  K  D  T  Q  *  L  E  R  T  C  F  I  *  E  P  *  Y  F  H  T  G  L  H  K  Y  F  R  T  A  T  R  L  S   : A  R  S  S  *  K  D  C  E  S  A  G  R  H  T  T  K  R  R  K  R   : G  C  S  R  M  Q  R  N  L  R  K  F  S  G  R  W  K  S  S  K  N  R  F  C  F  S  Q  G  E  V  L  I  S  G  K  T  F  N  M  A  K  A  H  L  D  S  C  C  C  N  K  S  F  V  F  S  L  A  E  Y  F  L  Y  M  P  S  V  I  N  V  Q  I  G  T  I  F  S  V  F  I  *  F  D  L  S  L  A  H  L  F  G  L  *  L  P  L  P  N  M  Y  S  L  L  F  Y  H  F  S  Y  Y  Q  F  C  N  R  *  G  Y  S  A  L  A  P  V  L  L  V  M  I  V  K  *  *  V  S  *  F  I  L  L  S  *  F  L  K  C  F  N  Y  E  Q  I  D  P  F  C  C  S  I  K  </second_frame>
            <third_frame>   N  I  L  K  M  W  I  E  H  G  R  R  L  R  R  H  C  G  P  I  L  Q  I  S  P  N  W  L  R  I   : A  H  K  H  S  S  V  L  *   : G  L  L  K  C  K  K  S  *  I  N  N  S  Q  K  K  Q  L  R  L  R  E  V  V  L  W  L  Q  S  Q  I  L  E  E  M  P   : K  K  Q  L  L  L  K  I  S  H  S  R  S  *  R  L  R  E  K  A  T  R  T  N  V  M  K  V  *  G  S  L  L  K  H  V  L  T  N  C  S  M  S  K  T  L  K  Q  L  *  R  K  L  E  * :   *  E  K  S  L  E  R  Y  M  T  M  W  L  L  V  F  L  Q   : D  M  K  F  S  S  S  W  *  I  F  I  Q  R  D  L  F  S  G  *  E  R  *  V  I  K  L  V  I  *  Q  I  *  R  F  *  R :   *  Q  V  G  W  L  I  T  K  K  V  *  L  S  L  E  L  M  I  L  *  L  K  F  A  Q  R  V  V  Q  W  I  L  S  *  M  R  M  L  R  E  C  K  L  Q  Q  R :   N  G  T  *  I  S  *  R  Q  T  K  Y  S  H  L  K  R  L  M  M  G  N  Y  I  H  L  P  P  L  T  Y  L  G  F  W  G  S  R  C  K  L  C  E  K  I  A  L  M  S  C  Y  T  G  S  L  W  L  S  F  R :   *  *  L  I  F  K  Q  L  R  G  R  D  W  R  N  L  L  L  K  L  V  W  N  P  Y  V  Q  * :   L  T  T  I  F  A  V  M  I  S  R  W  S  *  V  L  V  L  L  K  L  S  H  R  T  M  L  S  R :   L  I  L  R  T  L  A  K  G  F  *  R  L  Q  R :   K  L  F  I  K  L  S  V  L  S  L  K  I  Q  E  *  R  N  C  S  L  N  C  I  R  K  :  I  G  W  K  D  R  L  P  S  S  *  L  Q  R  L  E  T  T  S  L  M  *  R   : C  T  L  K  K  D  H  L  G  V  L  L  R  L  A  W  R  S  L  L  L  Y  M  W  I  I  Y  L  P  R  F  I  *  K  V  P  D  G  S  F  I  *  Y  R  F  Y  F  W  V  V  T  Q  F  H  *  L  F  Y  V  S  S  W  *  K  N  Y  I  K  E  E  T  I  E  R  M  R  L  D  E  E  V  L  M  D  F  F  R  E  Y  I  S  V  S  :  K  V  E  S  R  V  R  I  L  S  D  L  R  E  L  A  S  S  E  S  P  D  T  F  T  L  V  Y  T  N  I  L  E  Q  Q  P  D  C  P  :  P  E  V  V  E  K  I  V  S  L  R  E  G  I  P  R  K  D  A  K  E  :  V  V  Q  E  C  K  E  I  Y  V  N  S  L  V  D  G  N  P  P  K  T  G  F  V  F  P  R  V  K  S  L  S  A  A  K  H  S  I  W  R  K  L  T  *  T  A  A  A  A  T  N  R  L  F  F  H  S  L  N  I  S  C  T  C  L  P  S  *  M  Y  R  L  G  L  Y  F  P  S  S  Y  D  L  I  Y  L  *  L  I  Y  S  D  C  S  C  L  C  Q  I  C  I  H  Y  F  F  T  I  L  A  T  T  N  F  A  T  A  R  V  T  A  H  S  L  R  F  Y  L  *  *  L  L  N  N  R  S  A  D  S  F  F  S  L  D  S  *  N  V  S  T  M  N  R  S  I  P  F  V  V  A  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17081" stop="17172"/>
                    <exon start="17833" stop="17859"/>
                    <exon start="18084" stop="18191"/>
                    <exon start="18296" stop="18458"/>
                    <exon start="19583" stop="19638"/>
                    <exon start="20363" stop="20471"/>
                    <exon start="21555" stop="21695"/>
                    <exon start="21784" stop="21963"/>
                    <exon start="22989" stop="23072"/>
                    <exon start="23172" stop="23258"/>
                    <exon start="24681" stop="24725"/>
                    <exon start="26768" stop="26846"/>
                    <exon start="28902" stop="28971"/>
                    <exon start="29187" stop="29295"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFEDVDRTWETFEKTLWAHIANFSKLAKDSPQTLVRAIRVVEMQEILDQQLAEEAAEAEGGGAMASVANPRRNAKKTTSSKNLTQQKLKAQGKGYKDKCYESIRKSVEARFDKLLDEQDLKTAIEEARVIGEELGEIYDYVAPCFPPRYEVFQLMVNLYTERFVQWLRKMSDQASNMTNIEILKVTGWVVDYQESLIELGVDDSLAQVCSESGAMDPLMNAYVERMQATTKKWYLNILEADKVQPPKKTDDGKLYTPAAVDLFRILGEQVQIVRENSTDVMLYRIALALIQVMIDFQAAERKRLEEPASEIGLESLCAMINNNLRCYDLAMELSSSTLEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVEELLVKLYQKDWLEGQVTEFLVATFGDYFTDVKMYIEERSFRRFVEACLEESVVVYVDHLLTQVYLKSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29375" stop="29464"/>
                    <exon start="31840" stop="31956"/>
                    <exon start="32272" stop="32334"/>
                    <exon start="32838" stop="32969"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNYIKEETIERMRLDEEVLMDFFREYISVSKVESRVRILSDLRELASSESPDTFTLVYTNILEQQPDCPPEVVEKIVSLREGIPRKDAKEVVQECKEIYVNSLVDGNPPKTGFVFPRVKSLSAAKHSIWRKLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 36448 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 9888 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2472 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 11:42:14
-->
