<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:50:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744968" ref_strand="+" ref_description="SGN-E744968 [GI|2065193]">
      <seq>gccgctcaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatctcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattttcttattatctctttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgcaatagctgcagcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcatttttgactggttttgtgtacccaattgtctcacattggttctggtccggtgatggttgggccagtgcatcaaaaaccgatggtaacttattattgcggttcggtgttatcgattttgccgggtccggtgttgttcatatggttggtggcattgccggtctatggggcgctttcatcgaaggaccacgaatcggtcggtttgatcggtccggtcggtctgttgccctaagaggccatagtgcctcattagttgtattaggtacttttttactatggttcggttggtacggatttaatcctggttcattcttaactattcttaaatcatacgatcataccataagaggtacttattatggtcagtggagcgcgatcggtagaacagctgtcacgactacattggctggttgtaccgccgctctgacaactttgttttgtaagaggcttttagtggcacattggaatgtagttgatgtatgtaacggtttactaggtggatttgcagcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggatttaacgcattggcagctaaattaaaatacgacgatccattagaagcagcacaacttcatggtggttgcggttcatgggggataatatttactggattattcgcgaaaaaagaatatgtcaacgaagtatatccaggatttcctaatagaccatatggattgtttatgggaggtggtggaaaactattaggtgcacaagtaattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccgactaatacttctacaccagatcatcaaaatagatctgttaatgtggttgtataacaaataaataaataaataaaaatgttactatatagaatggtcaccttataattaaggaaacgtcaaatctcaaagtgctttaataatgtgatattattggtttcttgatagactatatatatatatgccaaatatttttgaccaaaaaaaaaaggattgtacttattttagctttatgactttattgtatgtgtcttcttgtttgtttgtttatttatttgaagcagttatctgtattgttctaaagatgtaaataaatagattattaattactctggtcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69749" stop="66208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69453" g_stop="69005" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="66514" g_length="1384"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="1830" r_length="1382" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1838" polyA_stop="1858"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E744968" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1833</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69453" e_stop="69005"/>
          <exon e_start="67897" e_stop="66514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATT-CGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTATGGTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAG-AGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTAATTAC</genome_strand>
        <mrna_strand>GCCGCT-CAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTTTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCAATAGCTGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACTGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTGCGGTTC-GGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGAACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGCACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCAGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGAC--TATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTAT-GTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAGCAGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434583" ref_strand="-" ref_description="SGN-E434583 [STM-60-K15]">
      <seq>atatggattgtttatgggaggtggtgggaaactattaggtgcacaaatagttcaagttgttgtgattattggatgggtgagtgtaacaatgggaccattgttttatttgttacataagtttaagttgttgaggatatcgggagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccaactaatactcctacacctgatcatcacaatagatctgttaatgtggttgtgtaacaaataaataaataaaatgttactatataggatggtcaccttataattaaggaaaggtcaaatctcaaagtgctttaataatgtgatattattgggttcttgatagactatatatatatatgcaaaaaaaaattgacaaaaaaagggttgtacttatttgagcttcatgactttattgtatggtgtctaatgtcttcttgtttgtttgtttgaagagtggtctgtattgttctaaaaatgtaaataaatagactattacctggtgtttgccaaaaaaaaaagaaaaaaaaanctcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67398" stop="66219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67098" g_stop="66519" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="601"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E434583" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67098" e_stop="66519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTATGGTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAGAGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTA</genome_strand>
        <mrna_strand>ATATGGATTGTTTATGGGAGGTGGTGGGAAACTATTAGGTGCACAAATAGTTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTAACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGTTGTTGAGGATATCGGGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCAACTAATACTCCTACACCTGATCATCACAATAGATCTGTTAATGTGGTTGTGTAACAAATAAATAAAT-AA----AATGTTACTATATAGGATGGTCACCTTATAATTAAGGAAAGGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGGTTCTTGATAGAC--TATATATATATATGCAAAAAAAAATTGA-C---AAAAAAAGGGTTGTACTTATTTGAGCTTCATGACTTTATTGTATGGTGTC-TAATGTCTTCTTGTTTGTTTGTTTGAAGAGTGGTCTGTATTGTTCTAAAAATGTAAATAAATAGACTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210946" ref_strand="+" ref_description="SGN-E210946 [cLEC-69-F3]">
      <seq>agcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggatttaacgcattggcagctaaattaaaatacgacgatccattagaagcagcacaacttcatggtggttgcggttcatgggggataatatttactggattattcgcgaaaaaagaatatgtcaacgaagtatatccaggatttcctaatagaccatatggattgtttatgggaggtggtggaaaactattaggtgcacaagtaattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccgactaatacttctacacctgatcatcaaaatagatctgttaatgtggttgtataacaaataaataaataaataaaaatgttactatatagaatggtcaccttataattaaggaaacgtcaaatctcaaagtgctttaataatgtgatattattggtttcttgatagactatatatatatatatgccaaatatttttgaccaaaaaaaaaaggattgtacttattttagctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67632" stop="66310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67332" g_stop="66610" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E210946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67332" e_stop="66610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTAT</genome_strand>
        <mrna_strand>AGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747392" ref_strand="+" ref_description="SGN-E747392 [GI|47104570]">
      <seq>ccttcttcttccttcatcactctctctctattaattactaattctccaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatctcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattatctctttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcatttttgaccggttttgtgtacccaattgtctcacattggttctggtccggtgatggttgggccagtgcatcaaaaaccgatggtaacttattattcggttcgggtgttatcgattttgccgggtccggtgttgttcatatggttggtggcattgccggtctatggggcgctttcatcgaaggaccacgaatcggtcggtttgatcggtccggtcggtctgttgccctaagaggccatagtgcctcattagttgtattaggtacttttttactatggttcggttggtacggatttaatcctggttcattcttaactattcttaaatcatacgatcataccataagaggtacttattatggtcagtggagcgcgatcggtaggacagctgtcacgactacattggctggttgtaccgccgctctgacaactttgttttgtaagaggcttttagtgggacattggaatgtagttgatgtatgtaacggtttactaggtggatttgcagcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggatttaacgcattggcagctaaattaaaatacgacgatccattagaagcagcacaacttcatggtggttgcggttcatgggggataatatttactggattattcgcgaaaaaagaatatgtcaacgaagtatatccaggatttcctaatagaccatatggattgtttatgggaggtggtggaaaactattaggtgcacaagtaattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccgactaatacttctacacctgatcatcaaaatagatctgttaatgtggttgtataacaaataaataaataaataaaaatgttactatatagaatggtcaccttataattaaggaaacgtcaaatctcaaagtgctttaataatgtgatattattggtttcttgatagactatatatatatatatgccaaatatttttgaccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69792" stop="66334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69492" g_stop="69005" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="66634" g_length="1264"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="1752" r_length="1264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1753" polyA_stop="1762"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E747392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1752</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69492" e_stop="69005"/>
          <exon e_start="67897" e_stop="66634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAA</genome_strand>
        <mrna_strand>CCTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372132" ref_strand="+" ref_description="SGN-E372132 [TUS-30-D18](-)">
      <seq>aggtggatttgcagcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggatttaacgcattggcagctaaattaaaatacgacgatccattagaagcagcacaacttcatggtggttgcggttcatgggggataatatttactggattattcgcgaaaaaagaatatgtcaacgaagtatatccaggatttcctaatagaccatatggattgtttatgggaggtggtggaaaactattaggtgcacaagtaattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccgactaatacttctacacctgatcatcaaaatagatctgttaatgtggttgtataacaaataaataaataaataaaaatgttactatatagaatggtcaccttataattaaggaaacgtcaaatctcaaagtgctttaataatgtgatattattggtttcttgatagacatatatatatatatatgccaaatatttttgaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67644" stop="66335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67344" g_stop="66635" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E372132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67344" e_stop="66635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGAC-TATATATATATATATGCCAAATATTTTTGACCAAAAAAAAA</genome_strand>
        <mrna_strand>AGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACATATATATATATATATGCCAAATATTTTTGACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308996" ref_strand="+" ref_description="SGN-E308996 [cLEY-23-B20]">
      <seq>taattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccgactaatacttctacacctgatcatcaaaatagatctgttaatgtggttgtataacaaataaataaataaataaaaatgttactatatagaatggtcaccttataattaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67351" stop="66429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67051" g_stop="66728" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="359"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E308996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67051" e_stop="66728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAAC</genome_strand>
        <mrna_strand>TAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284807" ref_strand="+" ref_description="SGN-E284807 [cLER-19-A15]">
      <seq>aatatgtcaacgaagtatatccttgatttcctaatagaccatatggattgtttatgggaggtggtggaaaactattatgtgcacaagtaattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacgagagttgaaccgactaatacttctacacctgatcattaaaatagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67438" stop="66507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67138" g_stop="66807" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E284807" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67138" e_stop="66807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCT</genome_strand>
        <mrna_strand>AATATGTCAACGAAGTATATCCTTGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTATGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACGAGAGTTGAACCGACTAATACTTCTACACCTGATCATTAAAATAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278168" ref_strand="+" ref_description="SGN-E278168 [cLER-9-I7]">
      <seq>tggcattgccggtctatggggcgctttcatcgaaggaccacgaatcggtcggtttgatcggtccggtcggtctgttgccctaagaggccatagtgcctcattagttgtattaggtacttttttactatggttcggttggtacggatttaatcctggttcattcttaactattcttaaatcatacgatcataccataagaggtacttattatggtcagtggagcgcgatcggtaggacagctgtcacgactacattggctggttgtaccgccgctctgacaactttgttttgtaagaggcttttagtgggacattggaatgtagttgatgtatgtaacggtttactaggtggatttgcagcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggatttaacgcattggcagctaaattaaaatacgacgatccattagaagcagcacaacttcatggtggttgcggttcatgggggataatatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67989" stop="66858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67689" g_stop="67158" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E278168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67689" e_stop="67158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACT</genome_strand>
        <mrna_strand>TGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725647" ref_strand="+" ref_description="SGN-E725647 [LA04BH03]">
      <seq>atcgattttgccgggtccggtgttgttcatatggttggtggcattgccggtctatggggcgctttcatcgaaggaccacgaatcggtcggtttgatcggtccggtcggtctgttgccctaagaggccatagtgcctcattagttgtattaggtacttttttactatggttcggttggtacggatttaatcctggttcattcttaactattcttaaatcatacgatcataccataagaggtacttattatggtcagtggagcgcgatcggtaggacagctgtcacgactacattggctggttgtaccgccgctctgacaactttgttttgtaagaggcttttagtgggacattggaatgtagttgatgtatgtaacggtttactaggtggatttgcagcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggattaacgcattgcagctaattaaatacgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="68027" stop="66917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67727" g_stop="67217" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E725647" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67727" e_stop="67217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACG</genome_strand>
        <mrna_strand>ATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGA-TTAACGCATT-GCAGCT-AATT-AAATACGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307863" ref_strand="+" ref_description="SGN-E307863 [cLEY-20-P2]">
      <seq>cctggttcattcttaactattcttaaatcatacgatcataccataagaggtacttattatggtcagtggagcgcgatcggtaggacagctgtcacgactacattggctggttgtaccgccgctctgacaactttgttttgtaagaggcttttagtgggacattggaatgtagttgatgtatgtaacggattactaggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="67838" stop="67038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67538" g_stop="67338" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E307863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67538" e_stop="67338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGA</genome_strand>
        <mrna_strand>CCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGATTACTAGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434582" ref_strand="+" ref_description="SGN-E434582 [STM-60-K15]">
      <seq>ttccttcatcactctctctatttaaattactaattcctcaaatcatggcttccgccgtaacttgctcagctgccgagctccttcctcatctcggcagctcagcaaatgccacagcagccgcagaattcatctgtggccgcttctcagctgtctcagagtacctcacacaaaccacctacgcggtggacaccacgtacctcctcttctcggcttacctcgtcttcgccatgcaattggggtttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattacctatttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgattatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcatttttgaccggttttgtgtacccaattgtctcacactggttctggtccggtgatggttgggccagtgcatcaaaaaccgatggaaacttattattcggttcgggtgttatcgattttgccggttcaggtgttgttcatatggttggtggcattgccggtctatggggcgctctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69784" stop="67361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69484" g_stop="69005" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="67661" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="717" r_length="237" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E434582" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69484" e_stop="69005"/>
          <exon e_start="67897" e_stop="67661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCA</genome_strand>
        <mrna_strand>TTCCTTCATCACTCTCTCTATTTAAATTACTAATTCCTCAAATCATGGCTTCCGCCGTAACTTGCTCAGCTGCCGAGCTCCTTCCTCATCTCGGCAGCTCAGCAAATGCCACAGCAGCCGCAGAATTCATCTGTGGCCGCTTCTCAGCTGTCTCAGAGTACCTCACACAAACCACCTACGCGGTGGACACCACGTACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGGTTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTACCTATTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGATTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACACTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGAAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGTTCAGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372133" ref_strand="+" ref_description="SGN-E372133 [TUS-30-D18]">
      <seq>ttcttccttcatcactctctctctattaattactaattctccaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatctcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattatctctttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcatttttgaccggttttgtgtacccaattgtctcacattggttctggtccggtgatggttgggccagtgcatcaaaaaccgatggtaacttattattcggttcgggtgttatcgattttgccgggtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69787" stop="67409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69487" g_stop="69005" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="67709" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="672" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E372133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69487" e_stop="69005"/>
          <exon e_start="67897" e_stop="67709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCG</genome_strand>
        <mrna_strand>TTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410314" ref_strand="+" ref_description="SGN-E410314 [PPI-16-N9]">
      <seq>ttccttcatcactctctctatttaaattactaattcctcaaatcatggcttccgccgtaacttgctcagctgccgagctccttcctcatctcggcagctcagcaaatgccacagcagccgcagaattcatctgtggccgcttctcagctgtctcagagtacctcacacaaaccacctacgcggtggacaccacgtacctcctcttctcggcttacctcgtcttcgccatgcaattggggtttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattacctatttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgattatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcatttttgaccggttttgtgtacccaattgtctcacactggttctgggtccgtgatggttgggccagtgcatcaaaaaccgatggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69784" stop="67449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69484" g_stop="69005" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="67749" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="629" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E410314" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69484" e_stop="69005"/>
          <exon e_start="67897" e_stop="67749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAAC</genome_strand>
        <mrna_strand>TTCCTTCATCACTCTCTCTATTTAAATTACTAATTCCTCAAATCATGGCTTCCGCCGTAACTTGCTCAGCTGCCGAGCTCCTTCCTCATCTCGGCAGCTCAGCAAATGCCACAGCAGCCGCAGAATTCATCTGTGGCCGCTTCTCAGCTGTCTCAGAGTACCTCACACAAACCACCTACGCGGTGGACACCACGTACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGGTTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTACCTATTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGATTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACACTGGTTCTGGGTCCGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299755" ref_strand="+" ref_description="SGN-E299755 [cLEW-1-L8]">
      <seq>cttcttcttccttcatcactctctctctattaattactaattctccaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatctcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattatctctttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69791" stop="67531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69491" g_stop="69005" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="67831" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="554" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E299755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69491" e_stop="69005"/>
          <exon e_start="67897" e_stop="67831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTT</genome_strand>
        <mrna_strand>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725770" ref_strand="+" ref_description="SGN-E725770 [LA05CE07]">
      <seq>cttcttcttccttcatcactctctctctattaattactaattctccaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatctcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattatctctttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69791" stop="67537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69491" g_stop="69005" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="67837" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="548" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E725770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69491" e_stop="69005"/>
          <exon e_start="67897" e_stop="67837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTC</genome_strand>
        <mrna_strand>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283015" ref_strand="+" ref_description="SGN-E283015 [cLER-17-D1]">
      <seq>tctattaattactaattctccaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatttcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgacttattatctctttggttatgcctatgcctttggagctccttctaatggtttcattggaaaacattgttttggatcaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69766" stop="67579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69466" g_stop="69005" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="67879" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="481" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E283015" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69466" e_stop="69005"/>
          <exon e_start="67897" e_stop="67879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCAT</genome_strand>
        <mrna_strand>TCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATTTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGACTTATTATCTCTTTGGTTATGCCTATGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTGTTTTGGATCAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375350" ref_strand="+" ref_description="SGN-E375350 [TUS-15-N14](-)">
      <seq>aaattttaaaccagcaaacccaggatgttcaaagttggggatcttcagggttaaattgacctctgaaagggcctaccacgggagctgccattgcattcatctttagttatctttcttgggaattgggccaaggcatacagagcataccggagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgcttttgcaatggtgggacttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtagactcggttggattaactaagcatcttactttaaaatggtggcctcctcgaatttgagtataatagaggttctttgctcgtagtttcaatgttgcatccttgcttctggctaactgactgcaaagcttgttgaaaatattattttggcttcttggttcttttgtaaatttttgtttttaggccatgtcttcttccagtcaatgtatcaatattccttgtgatcttctcgtgatgtgtttcctcaagagggatgcttcttgaggaatttggttgttttgtgttgtctctctgttagcatagaaacacttgtctcatattgataatgtcaagtgtcttatcttaaaaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="112418" stop="109474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112222" g_stop="112191" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.186" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="106" r_length="73" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="311" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110194" g_stop="109767" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="739" r_length="428" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E375350" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112222" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTTAAGCAGCAAACC-AGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGG-TTGAATTGACCTCTGGAAAGGCCTA-CACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</genome_strand>
        <mrna_strand>AAATTTTAAACCAGCAAACCCAGGATGTTCAAA..........................................................................GTTGGGGATCTTCAGGGTTAAATTGACCTCTGAAAGGGCCTACCACGGGAGCTGCCATTGCATTCATCTTTAG...................................................................................TTATCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTAAAAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263415" ref_strand="+" ref_description="SGN-E263415 [cLEG-62-N12]">
      <seq>tggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtgcagaagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatctggggttgatgttgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaggcctacactggagctgccattgcattcatctttagttttctttcttgggaattgggccaaggcatacagagcataccggagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgcttttgcaatggtgggacttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtagactcggttggattaactaagcatcttactttaaaatggtggcctcctcgaatttgagtataatagaggttctttgctcgtagtttcaatgttgcatccttgcttctggctaactgactgcaaagcttgttgaaaatattattttggcttcttggttcttttgtaaatttttgtttttaggccatgtcttcttccagtcaatgtatcaatattccttgtgatcttctcgtgatgtgtttcctcaagaaggatgcttctgangaatttggttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="118101" stop="109548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117801" g_stop="117729" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="172" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="243" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="334" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="448" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110194" g_stop="109848" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="794" r_length="346" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E263415" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117801" e_stop="117729"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTT</genome_strand>
        <mrna_strand>TGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAAGGATGCTTC-TGANGAATTTGGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433156" ref_strand="-" ref_description="SGN-E433156 [STM-58-G9]">
      <seq>ctgcagacttttttcngcagcttcctcgtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatcaggagttgagggtgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaagcctacactggagctgccatcgcagtcatctttagttttctttcttgggaattgagtcaaggcatacagagcataccagagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccattttagctgcttttgcaacggtggggcttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtaaactcggttggattaactaagcatcttactttgaatttggtggcctccttgaatttgagtataatagaggttctttgattgtagcttcaatgttgcatccttgcttctggcttgctgactgcaaagcttgttgtaaatattactttggcttcttagatcttctgtaaatttttgctttaagccatgtcttctttcagtcaaaatatcaatattccatgtgaaacaaaaaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="119862" stop="109604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119562" g_stop="119519" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="92" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119148" i_stop="112290" i_length="6859">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="191" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.186" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="262" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="353" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="467" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110194" g_stop="109905" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="757" r_length="290" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E433156" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433156" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119562" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTT-AAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTG</genome_strand>
        <mrna_strand>CTGCAGACTTTTTTCNGCAGCTTCCTCGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCAGGAGTTGAGGGTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAAGCCTACACTGGAGCTGCCATCGCAGTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGAGTCAAGGCATACAGAGCATACCAGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCATTTTAGCTGCTTTTGCAACGGTGGGGCTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAAACTCGGTTGGATTAACTAAGCATCTTACTTTGAATTTGGTGGCCTCCTTGAATTTGAGTATAATAGAGGTTCTTTGATTGTAGCTTCAATGTTGCATCCTTGCTTCTGGCTTGCTGACTGCAAAGCTTGTTGTAAATATTACTTTGGCTTCTTAGATCTTCTGTAAATTTTTG-CTTTAAGCCATGTCTTCTTTCAGTCAAAATATCAATATTCCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427610" ref_strand="-" ref_description="SGN-E427610 [STM-48-F6]">
      <seq>gcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagtgtggcgaggaggttggagagacattgttaaatataagccgagcatgggaaatggctgatacatcaacatccacagctttagtggacaagctgcctttactgactggctcattgacaggctctcaaaaatcagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtacagaagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatcaggagttgagggtgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaagcctacactggagctgccatcgcagtcatctttagttttctttcttgggaattgagtcaaggcatacagagcataccagagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgtttttgcaaccgtggggcttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtaaactcggttggattaactaagcatcttactttaaatatggtggcctccttgaatttgagtataatagaggttctttgattgttgcatccttgcttctggcttgctgactgcaaagcttgttgtaaataaaagttggcttcttagatcttttgtaaatttttgctttatgtttggggtttttcagtcaatgtatcaatattccatggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="119498" stop="109604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="56" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="189" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97">
            <donor d_prob="0.465" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117805" g_stop="117729" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="266" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="365" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.186" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="527" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="641" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110194" g_stop="109908" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="915" r_length="274" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="918" polyA_stop="930"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E427610" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117805" e_stop="117729"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAA-ATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTT</genome_strand>
        <mrna_strand>CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCGAGGAGGTTGGAGAGACATTGTTAAATATAAGCCGAGCATGGGAAATGGCTGATACATCAACATCCACAGCTTTAGTGGACAAGCTGCCTTTACTGACTGGCTCATTGACAGGCTCTCAAAAATCAG.................................................................................................CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCAGGAGTTGAGGGTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAAGCCTACACTGGAGCTGCCATCGCAGTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGAGTCAAGGCATACAGAGCATACCAGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGTTTTTGCAACCGTGGGGCTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAAACTCGGTTGGATTAACTAAGCATCTTACTTTAAATATGGTGGCCTCCTTGAATTTGAGTATAATAGAGGTTC-TT--T-G-A---T---TGTTGCATCCTTGCTTCTGGCTTGCTGACTGCAAAGCTTGTTGTAAATA-AAAGTTGGCTTCTTAGATCTTTTGTAAATTTTTG-CTTTATG-TTTGGGGTTTTTCAGTCAATGTATCAATATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334043" ref_strand="+" ref_description="SGN-E334043 [cTOD-24-M12]">
      <seq>atttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcaacgtccacagctttagtggacaagctgcctttattggttggctcattgacaggctctcaaaaatcagttagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtgcagaagtatctggggttgatgttgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaggcctacactggagctgccattgcattcatctttagttttctttcttgggaattgggccaaggcatacagagcataccggagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgcttttgcaatggtgggacttattttacttgggggacaacttaagtcggaaaataagtgagaagtgtgtaaatctttgcctcctttcttccctatattatttggttatttctctctttatcttccttccccacaggctggctcttttggggggaggggagccacttggntgtctgatggggctaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="119482" stop="111255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119182" g_stop="119149" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="167" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117902" i_stop="117810" i_length="93">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117809" g_stop="117729" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="248" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117728" i_stop="112241" i_length="5488">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112240" g_stop="112191" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="298" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="369" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="460" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111796" g_stop="111555" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="701" r_length="241" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E334043" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119182" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117809" e_stop="117729"/>
          <exon e_start="112240" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACT</genome_strand>
        <mrna_strand>ATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG.............................................................................................TTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCC-TATATTATTTGGTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGGAGGGGAGCCACTTGGNTGTCTGATGGGGCTAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403056" ref_strand="+" ref_description="SGN-E403056 [PPC-9-B23]">
      <seq>caaaaatatggcccaactccctaatttacttctaaaaaaattactactttttgttgttgtttaatatttctcttctcttctcttctcttgtgcttcaatggcttcctctctctcactacatcaacacactatctattgtctctctcctactcctactcttcgtttcggaaaatacccacaccatatctccatccttccatcttttcgcaagaatttcgtcaaattcgattctcctacaacagtaccgtttgctgttacagaatctgattcccccaaatctcttgaaccagaccctcaaactcttctgcaacaagtcgctgagagttttgttctacctgcagactttttttcgcagcttcctcgtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatcangagttgagggtgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaagcctacactggagctgccatcgcagtcatncttagttttctttcttgggaattgagtcanggcatacagagcataccagagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaacattttagctgcttttgcacggtggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120218" stop="111427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119918" g_stop="119671" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="319" r_length="242" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="379" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="427" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="112290" i_length="6859">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="526" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.186" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="597" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="688" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111796" g_stop="111727" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="756" r_length="68" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E403056" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119918" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGAC</genome_strand>
        <mrna_strand>TTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTCTCTCACTACATCAACACAC-T--ATCTATTGTCTCTCTCCTACTCCTACTCTTCGTTTCGGAAAATACCCACA-C-CAT-ATCTCCATCCTTCCATCTTTTCGCAAGAATTTCGTCAAATTCGATTCTCCTACAACAGTACCGTTTGCTGTTACAGAATCTGATTCCCCCAAATCTCTTGAACCAGACCCTCAAACTCTTCTGCAACAAGTCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCTCGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCANGAGTTGAGGGTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAAGCCTACACTGGAGCTGCCATCGCAGTCATNCTTAG...................................................................................TTTTCTTTCTTGGGAATTGAGTCANGGCATACAGAGCATACCAGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAA-CATTTTAGCTGCTTTTGC-ACGGTGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614636" ref_strand="+" ref_description="SGN-E614636 [64426]">
      <seq>ctccatccttccatcttttcgcaagaatttcctcaaattcgattctcctacaacagtaccgtttgctgttacagaatctgattcccccaaatctcttgaaccagaccctcaaactcttctgcaacaagtcgctgagagttttgttctacctgcagactttttttcacagcttcctcgtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagtgtggcgaggaggttggagagacattgttaaatataagccgagcatgggaaatggctgatacatcaacatccacagctttagtggacaagctgcctttactgactggctcattgacaggctctcaaaaatcagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtacagaagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatcaggagttgagggtgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaagcctacactggagctgccatcgcagtcatctttagttttctttcttgggaattgagtcaaggcatacagagcataccagagagctcattacagtatgcaaatgacaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120103" stop="111587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119803" g_stop="119671" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="193" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="241" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="374" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97">
            <donor d_prob="0.465" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117805" g_stop="117729" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="451" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="550" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.186" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="621" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111962" g_stop="111887" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="697" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E614636" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119803" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117805" e_stop="117729"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCT</genome_strand>
        <mrna_strand>CTCCATCCTTCCATCTTTTCGCAAGAATTTCCTCAAATTCGATTCTCCTACAACAGTACCGTTTGCTGTTACAGAATCTGATTCCCCCAAATCTCTTGAACCAGACCCTCAAACTCTTCTGCAACAAGTCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCACAGCTTCCTCGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCGAGGAGGTTGGAGAGACATTGTTAAATATAAGCCGAGCATGGGAAATGGCTGATACATCAACATCCACAGCTTTAGTGGACAAGCTGCCTTTACTGACTGGCTCATTGACAGGCTCTCAAAAATCAG.................................................................................................CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCAGGAGTTGAGGGTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAAGCCTACACTGGAGCTGCCATCGCAGTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGAGTCAAGGCATACAGAGCATACCAGAGAGCTCATTACAGTATGCAAATGACAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487676" ref_strand="+" ref_description="SGN-E487676 [cSTE-26-C22]">
      <seq>cttcctctctctcactacatcaacacactatctgttgtctctctcctactcctactcttcgtttcggaaaatacccacatcatatctccatccttccatcttttcgcaagaatttcctcaaattcgattctcctacaacagtaccgtttgctgttacagaatctgattcccccaaatctcttgaaccagaccctcaaactcttctgcaacaagtcgctgagagttttgttctacctgcagactttttttcacagcttcctcgtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagtgtggcgaggaggttggagagacattgttaaatataagccgagcatgggaaatggctgatacatcaacatccacagctttagtggacaagctgcctttactgactggctcattgacaggctctcaaaaatcagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtacagaagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatcaggagttgagggtgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaagcctacactggagctgccatcgcagtcatctttagttttctttcttgggaaatgagtcaagcatacagagcataccagagagctcattacagtatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120164" stop="111598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119894" g_stop="119671" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="278" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="326" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="459" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97">
            <donor d_prob="0.465" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117805" g_stop="117729" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="536" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="635" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.186" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="706" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111962" g_stop="111898" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="770" r_length="64" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E487676" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119894" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117805" e_stop="117729"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAA</genome_strand>
        <mrna_strand>CTTCCTCTCTCTCACTACATCAACA--C-ACTATCTGTTGTCTCTCTCCTACTCCTACTCTTCGTTTCGGAAAATACCCACATC--AT-ATCTCCATCCTTCCATCTTTTCGCAAGAATTTCCTCAAATTCGATTCTCCTACAACAGTACCGTTTGCTGTTACAGAATCTGATTCCCCCAAATCTCTTGAACCAGACCCTCAAACTCTTCTGCAACAAGTCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCACAGCTTCCTCGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCGAGGAGGTTGGAGAGACATTGTTAAATATAAGCCGAGCATGGGAAATGGCTGATACATCAACATCCACAGCTTTAGTGGACAAGCTGCCTTTACTGACTGGCTCATTGACAGGCTCTCAAAAATCAG.................................................................................................CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCAGGAGTTGAGGGTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAAGCCTACACTGGAGCTGCCATCGCAGTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAAATGAGTCAA-GCATACAGAGCATACCAGAGAGCTCATTACAGTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427609" ref_strand="+" ref_description="SGN-E427609 [STM-48-F6]">
      <seq>cttcctctctctcactacatcaacacactatctgttgtctctctcctactcctactcttcgtttcggaaaatacccacatcatatctccatccttccatcttttcgcaagaatttcctcaaattcgattctcctacaacagtaccgtttgctgttacagaatctgattcccccaaatctcttgaaccagaccctcaaactcttctgcaacaagtcgctgagagttttgttctacctgcagactttttttcacagcttcctcgtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagtgtggcgaggaggttggagagacattgttaaatataagccgagcatgggaaatggctgatacatcaacatccacagctttagtggacaagctgcctttactgactggctcattgacaggctctcaaaaatcagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaagtgaagtacagaagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120164" stop="111938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119894" g_stop="119671" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="278" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="326" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="459" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97">
            <donor d_prob="0.465" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117805" g_stop="117729" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="536" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112289" g_stop="112238" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="588" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E427609" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119894" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117805" e_stop="117729"/>
          <exon e_start="112289" e_stop="112238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTAT</genome_strand>
        <mrna_strand>CTTCCTCTCTCTCACTACATCAACA--C-ACTATCTGTTGTCTCTCTCCTACTCCTACTCTTCGTTTCGGAAAATACCCACATC--AT-ATCTCCATCCTTCCATCTTTTCGCAAGAATTTCCTCAAATTCGATTCTCCTACAACAGTACCGTTTGCTGTTACAGAATCTGATTCCCCCAAATCTCTTGAACCAGACCCTCAAACTCTTCTGCAACAAGTCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCACAGCTTCCTCGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCGAGGAGGTTGGAGAGACATTGTTAAATATAAGCCGAGCATGGGAAATGGCTGATACATCAACATCCACAGCTTTAGTGGACAAGCTGCCTTTACTGACTGGCTCATTGACAGGCTCTCAAAAATCAG.................................................................................................CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAAGTGAAGTACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343843" ref_strand="+" ref_description="SGN-E343843 [cTOF-12-K18]">
      <seq>ttttctactcctactcttcgttttggcaaacacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggaaatcgctgagagttttgttctacctgcagactttttttcgcagcttcccagtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcaacgtccacagctttagtggacaagctgcctttattggttggctcattgacaggctctcaaaaatcaggcaagaaaaagcctacaactatgatactttacttcttgccttgcacaagcaaattgagttcctttttccacctgaatttcattcttatactagttagcatttggaaggcngcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggntgaagtgcagaagattgctaaagttatgataaagactggaaagtttgttgtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120150" stop="111949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119850" g_stop="119671" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="240" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117729" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="597" r_length="309" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112289" g_stop="112249" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="639" r_length="42" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E343843" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119850" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117729"/>
          <exon e_start="112289" e_stop="112249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGC-GCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGG-TGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAG-TTGTTGTCTGC</genome_strand>
        <mrna_strand>TTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCNGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGNTGAAGTGCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTTGTTGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278734" ref_strand="+" ref_description="SGN-E278734 [cLER-2-O15]">
      <seq>acacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggaaatcgctgagagttttgttctacctgcagactttttttcgcagcttcccagtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcaacgtccacagctttagtggacaagctgcctttattggttggctcattgacaggctctcaaaaatcagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtgcagaagattgctaaagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120121" stop="117427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119821" g_stop="119671" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="211" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="259" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="392" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117805" g_stop="117729" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="469" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E278734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119821" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117805" e_stop="117729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG</genome_strand>
        <mrna_strand>ACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG.................................................................................................CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318898" ref_strand="+" ref_description="SGN-E318898 [cTOB-11-B15]">
      <seq>ttctctttttttgtgcttcaatggcctgctctatcgcacttcatcaacactcgtctatctattgtctcttttctactcctactcttcgttttggcaaacacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctctggaaccaaaccctcagacacttgtacaggaaatcgctgagagttctggtctacctgcagactttttttcgcagctgcccagtgatcttggcttaaatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaacaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcagcgtccacagctttagaggacaagctgcctttattggctggctcattgaccggctctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120218" stop="117607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119918" g_stop="119671" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="308" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="356" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117908" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="484" r_length="128" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E318898" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119918" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAA</genome_strand>
        <mrna_strand>TTCTCTTTTTTTGTGCTTCAATGGCCTGCTCTATCGCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTGGAACCAAACCCTCAGACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTCTGGTCTACCTGCAGACTTTTTTTCGCAGCTGCCCAGTGATCTTGGCTTAAAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAACAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAGCGTCCACAGCTTTAGAGGACAAGCTGCCTTTATTGGCTGGCTCATTGACCGGCTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204702" ref_strand="+" ref_description="SGN-E204702 [cLEC-14-L21]">
      <seq>aatatggctctcgcccaactccagttgtcaaaaaataatactagtaattctcttctcttgtgcttcaatggcttcctctatctcacttcatcaacactcgtctatctattgtctcttttctactcctactcttcgttttggcaaacacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggaaatcgctgagagttttgttctacctgcagactttttttcgcagcttcccagtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcaacgtccacagctttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120265" stop="117653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119965" g_stop="119671" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="355" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="403" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117953" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="486" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E204702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119965" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGT</genome_strand>
        <mrna_strand>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375351" ref_strand="+" ref_description="SGN-E375351 [TUS-15-N14]">
      <seq>acttcgtcaacactcatatatctattgtctcttttctactcctactcttcgtttaggcaaacacccacatcatatcatctccatccttccatcatttcacaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggaaatcgctgagagttttgttctacctgcagactttttttcgcagcttcccagcgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccacttaaagttgagtgtggtgaagaggctggagagacattgttatctataggtcgagcatgggaaatggctgatacatcaacgtccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120181" stop="117661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119881" g_stop="119671" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="271" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="319" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117961" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="394" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E375351" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119881" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACA</genome_strand>
        <mrna_strand>ACTTCGTCAACACTCATATATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTAGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCACAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGCGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCACTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGCTGGAGAGACATTGTTATCTATAGGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205588" ref_strand="+" ref_description="SGN-E205588 [cLEC-21-I8]">
      <seq>gcttcaatggcttcctctatctcacttcatcaacactcgtctatctattgtctcttttctactcctactcttcgttttggcaaacacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggagagttttgttctacctgcagactttttttcgcagcttcccagtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120204" stop="117673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119904" g_stop="119680" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119679" i_stop="119579" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="285" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="333" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117973" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="396" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E205588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119904" e_stop="119680"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACA</genome_strand>
        <mrna_strand>GCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAG.....................................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703068" ref_strand="+" ref_description="SGN-E703068 [FA20BH05]">
      <seq>cctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="126961" stop="41640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126661" g_stop="126632" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="119" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="204" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="286" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121799" g_stop="121448" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="638" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121447" i_stop="120452" i_length="996">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120451" g_stop="120395" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="695" r_length="57" r_score="0.614"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E703068" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126661" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121448"/>
          <exon e_start="120451" e_stop="120395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAGATGTTACTAGTTCGTGATTGGAGGAGGATGTTATGAAGTAATGTCAAATGTGTTAGGGTTGTTTAGTATTTGAATAAGAAATAAGGTATTAATATATTAGTTTCGTATAATTTATATGATATTTGGTAGGTAAATAGGAAATAAGTTATTCATGTATAAAATTAACATGATGGTTGATAATTTATAAAGGCAAAATACATAAATATACTTGTTCTTGACTGTATGCATTCTAATTTTGGAGTACACAAATACATATTTGAATAAATAGATACACTCATCCCACGTGATTTTTCTCGTGTATTATGTCATGTAGGATTTATGTGTCTATTTGTTCAACTTAATATTAATTTAAGTATCTATTTGTACACATTCGTAGTTTGATGGTATAAATGTGATTTGAGATCAAATTAAATGACACATTTTTGTATGATGATATTTTAGAACTTGTACGATGAATAAGTTATGAGGAGATTATGTAATATTTTATGCAGGTTAGAAAGGCGGATAAATTGATACATAAATAACTTAAACTTGTGGTTTTTTTTTATCCAATAGAAACAGGGCATAAACCAAATACACTGAAATTCTAAATATTTTTTTATAATAAACATGATCAAACACACTCCGACTTCAATAATTCTAACAACATTTTTTTTAAAAAAGCAACTGACTTTTATGGCCAGACACTCACTTATATACCCATATAAATAGAGCACAGGCCCAACTAGAAGATATACAAAAATATACACTTGGATAAGAGAATGTATCTACATTCTTCTCCCCTCTGTATCTCTGATTGAATATTATTTCTCCTTTTTAATTTGTTAGTCTCATTTAAATATTACACGAAATTAAAAAAGAAAAAGTGATTTTTGAATCTTGTGATATGAAATTAAAGATATGTTAAATTTATTAAAATATTATTCAATTTCATAATCTTAAACATGTCATATTAAAAGTTAAAAATTTAAAAATTATAAAAAAAAACTTTTAAATTAGACTAGAAAAATTAAAGA</genome_strand>
        <mrna_strand>CCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727225" ref_strand="+" ref_description="SGN-E727225 [LA14AD06]">
      <seq>aactaaatagtattgggtacaaaatagaatactgcaaaaggcccgaacagagttttgttttcgagaggacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttcgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttccattggacctttttttaatccggtacatatttttggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128188" stop="121110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127888" g_stop="127614" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="350" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="439" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="524" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="606" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121405" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="1000" r_length="394" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E727225" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1001</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127888" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAATAGTATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAGATGTTA</genome_strand>
        <mrna_strand>AACTAAATAGTATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTT-CGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCTTTTTTTAATCCGGTACATATTTTTGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223470" ref_strand="+" ref_description="SGN-E223470 [cLEL-14-L22](-)">
      <seq>tcgacatgcatttgtccttccgaccgggttgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaattgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttccattggaccattttttaatctgttacatattttttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="123831" stop="121110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123531" g_stop="123482" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="133" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121799" g_stop="121411" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="522" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="539"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E223470" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123531" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACATGCATTTGTCCTTCCGACCGGG-TGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAG</genome_strand>
        <mrna_strand>TCGACATGCATTTGTCCTTCCGACCGGGTTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAATTGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223531" ref_strand="+" ref_description="SGN-E223531 [cLEL-14-L22](-)">
      <seq>aaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttccattggaccattttttaatctgttacatattttttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="123157" stop="121110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122857" g_stop="122818" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121799" g_stop="121411" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="430" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="447"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E223531" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122857" e_stop="122818"/>
          <exon e_start="121799" e_stop="121411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAG-AAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAG</genome_strand>
        <mrna_strand>AAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233965" ref_strand="+" ref_description="SGN-E233965 [cLEL-8-K18](-)">
      <seq>gcttttcgttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtaaaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttccattggaccattttttaatctgttacatattttttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="121935" stop="121110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121635" g_stop="121411" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="226" polyA_stop="242"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E233965" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121635" e_stop="121411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAG</genome_strand>
        <mrna_strand>GCTTTTCGTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAAAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705227" ref_strand="+" ref_description="SGN-E705227 [FA26CB02]">
      <seq>ccttacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttaaaatgtagaggactttctactttccgccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgaacactcccattggaccattttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128120" stop="121130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127824" g_stop="127614" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="286" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="375" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="460" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="542" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121430" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="911" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E705227" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127824" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAAT</genome_strand>
        <mrna_strand>CCTTACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAAAATGTAGAGGACTTTCTACTTTCCG-CCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAACACTCCCATTGGACCATTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746760" ref_strand="+" ref_description="SGN-E746760 [GI|47104522]">
      <seq>caaaatagaatactgcaaaaggcccgaacagagttttgttttcgagaggacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128169" stop="121156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127869" g_stop="127614" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="420" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="505" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="587" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121456" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="931" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="932" polyA_stop="946"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E746760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127869" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGA</genome_strand>
        <mrna_strand>CAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374094" ref_strand="+" ref_description="SGN-E374094 [TUS-33-D9](-)">
      <seq>taaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcaaacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatttgtcaaccgcaaaaaatgagctgggtgttgtatttgctgaaagtgcagctggtggtaccatggttccaattagttggacaaaaatgcagtgccctttaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgcttttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttttttgcttttgtattatacatttaaaagtttgataaatttgctcctttattttgttgtgcgttatacattttgttagaatgtaaaggactttttactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="126980" stop="121156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126680" g_stop="126632" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="138" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="223" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="305" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121799" g_stop="121456" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="649" r_length="344" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="664"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E374094" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126680" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGA</genome_strand>
        <mrna_strand>TAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAAACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATTTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATTTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAAAAATGCAGTGCCCTTTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTTTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTTTTTGCTTTTGTATTATACATTTAAAAGTTTGATAAATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAAAGGACTTTTTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620424" ref_strand="+" ref_description="SGN-E620424 [71125]">
      <seq>tttgagaagccgttgttggagcatgacgatggctatggaagctgaaacccaagagttggtcacgccaggacaagtattaggcaaagcatcacagttgaaagccggaaagggggcttacgtttcaactgagaatggcaccgtttacgcctccctcaccgggttccgttctcttatacctccgccttccgattctgttgatcagagatcaacagtggaagttactggtcataaagcccatggagcagttcctcagcctggttccattgtttttgctagagttactaaggtgatggctagaacggcttcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaattcactggcattattaggcaacaagatgtcagagcaactgagattgacaaagttgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcacgagcatattatctgtcgactgcgaagaatgagctgggtgttgtatctgctgaaagtgcggctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattgtgttgctcttaactgcaaccaccggagggggtggatgcaggaggcagctgacaggacctattatgctcttgtattataattagtgttgatagatttgctccttaagttgtggtgcgttatacactttgttcagcaatgtagaggactttctactttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128115" stop="121228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127815" g_stop="127614" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="277" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="366" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="451" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="533" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121528" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="802" r_length="269" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E620424" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127815" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTT-AG-AATGTAGAGGACTTTCTACTTTCCG</genome_strand>
        <mrna_strand>TTTGAGAAGCCGTTGTTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAAGAGTTGGTCACGCCAGGACAAGTATTAGGCAAAGCATCACAGTTGAAAGCCGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACCGTTTACGCCTCCCTCACCGGGTTCCGTTCTCTTATACCTCCGCCTTCCGATTCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTGGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTCAGCCTGGTTCCATTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCTTCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTCACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTTGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCACGAGCATATTATCTGTCGACTGCGAAGAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTGTGTTGCTCTTAACTGCAACCACCGGAGGGGGTGGATGCAGGAGGCAGCTGACAGGACCTATTATGCTCTTGTATTATA-A-TT-AGTG-TTGATAGATTTGCTCC-TTAAGTTGTGGTGCGTTATACACTTTGTTCAGCAATGTAGAGGACTTTCTACTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604282" ref_strand="+" ref_description="SGN-E604282 [74415]">
      <seq>gttcttgagagggcttgtttgagaagccgttgttggagcatgacgatggctatggaagctgaaacccaagagttggtcacgccaggacaagtattaggcaaagcatcacagttgaaagccggaaagggggcttacgtttcaactgagaatggcaccgtttacgcctccctcaccgggttccgttctcttatacctccgccttccgattctgttgatcagagatcaacagtggaagttactggtcataaagcccatggagcagttcctcagcctggttccattgtttttgctagagttactaaggtgatggctagaacggcttcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaattcactggcattattaggcaacaagatgtcagagcaactgagattgacaaagttgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcacgagcatattatctgtcgactgcgaagaatgagctgggtgttgtatctgctgaaagtgcggctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaaggttgaagcttgagtagatcaaatcagattgtgttgctcttaactgcaaccaccggagggggtggatgcaggaggcagctgacagacctattatgctcttgtattataatttagtgtttgatagatttgctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128132" stop="121283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127832" g_stop="127614" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="294" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="383" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="468" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="550" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121583" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="765" r_length="215" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E604282" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127832" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAA-GTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTT</genome_strand>
        <mrna_strand>GTTCTTGAGAGGGCTTGTTTGAGAAGCCGTTGTTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAAGAGTTGGTCACGCCAGGACAAGTATTAGGCAAAGCATCACAGTTGAAAGCCGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACCGTTTACGCCTCCCTCACCGGGTTCCGTTCTCTTATACCTCCGCCTTCCGATTCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTGGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTCAGCCTGGTTCCATTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCTTCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTCACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTTGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCACGAGCATATTATCTGTCGACTGCGAAGAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGGTTGAAGCTTGAGTAGATCAAATCAGATTGTGTTGCTCTTAACTGCAACCACCGGAGGGGGTGGATGCAGGAGGCAGCTGACAGACCTAT-TATGCTCTTGTATTATA-ATTT-AGTGTTTGATAGATTTGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596055" ref_strand="+" ref_description="SGN-E596055 [39340]">
      <seq>gatggctatggaagctgaaaccaagagttggtcacgccatgacaagtattagcaaagcatcacagttgaaagccggaaagggggcttacgtttcaactgagaatggcaccgtttacgcctccctcaccgggttccgttctcttatacctccgccttccgattctgttgatcagagatcaacagtggaagttactggtcataaagcccatggagcagttcctcagcctggttccattgtttttgctagagttactaaggtgatggctagaacggcttcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaattcactggcattattaggcaacaagatgtcagagcaactgagattgacaaagttgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcacgagcatattatctgtcgactgcgaagaatgagctgggtgttgtatctgctgaaagttgcggctgggtggtaccatggttccaattagttggacagcaaatgcagtgccctctaactggtcaaggtagaaaccgcgaaagggtggccaaagttggaagcttgagtagatcaaatcagattgtgttgctcttaactgcaaccaacggaagggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128088" stop="121357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127788" g_stop="127614" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="248" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="337" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="422" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="506" r_length="84" r_score="0.878"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="0.81"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121657" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="655" r_length="149" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E596055" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127788" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAG-TGCAGCT-GGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAG-AAATGCAGTGCCCTCTAACTGGTCAA-GTAG-AACCGCGAAA-GGTGGCCAAAGTT-GAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACC-ACAGGAGGAGGTG</genome_strand>
        <mrna_strand>GATGGCTATGGAAGCTGAAA-CCAAGAGTTGGTCACGCCATGACAAGTATTA-GCAAAGCATCACAGTTGAAAGCCGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACCGTTTACGCCTCCCTCACCGGGTTCCGTTCTCTTATACCTCCGCCTTCCGATTCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTGGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTCAGCCTGGTTCCATTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCTTCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTCACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTTGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCACGAGCATATTATCTGTCGACTGCGAAGAATGAGCTGGGTGTTGTATCTGCTGAAAGTTGCGGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGCAAATGCAGTGCCCTCTAACTGGTCAAGGTAGAAACCGCGAAAGGGTGGCCAAAGTTGGAAGCTTGAGTAGATCAAATCAGATTGTGTTGCTCTTAACTGCAACCAACGGAAGGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605266" ref_strand="+" ref_description="SGN-E605266 [21182]">
      <seq>ccactaaatactattgggtacaaaatagaacactagcactgcaaaaggcccaaacagagttgtttttgagagggcttgtttgagaagccgttgttggagcatgacgatggctatggaagctgaaacccaagagttggtcacgccaggacaagtattaggcaaagcatcacagttgaaagccggaaagggggcttacgtttcaactgagaatggcaccgtttacgcctccctcaccgggttccgttctcttatacctccgccttccgattctgttgatcagagatcaacagtggaagttactggtcataaagcccatggagcagttcctcagcctggttccattgtttttgctagagttactaaggtgatggctagaacggcttcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaattcactggcattattaggcaacaagatgtcagagcaactgagattgacaaagttgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcacgagcatattatctgtcgactgcgaagaatgagctgggtgttgtatctgctgaaagtgcggctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtaggatcaaatcagattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128190" stop="121388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127861" g_stop="127614" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="280" r_length="246" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="355" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="444" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="529" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="611" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121688" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="724" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E605266" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127861" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTA-GATCAAATCAGATTATG</genome_strand>
        <mrna_strand>AGCACTGCAAAAGGCCCAAACAGAG--TTGTTTTTGAGAGGGCTTGTTTGAGAAGCCGTTGTTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAAGAGTTGGTCACGCCAGGACAAGTATTAGGCAAAGCATCACAGTTGAAAGCCGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACCGTTTACGCCTCCCTCACCGGGTTCCGTTCTCTTATACCTCCGCCTTCCGATTCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTGGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTCAGCCTGGTTCCATTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCTTCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTCACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTTGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCACGAGCATATTATCTGTCGACTGCGAAGAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGGATCAAATCAGATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374095" ref_strand="+" ref_description="SGN-E374095 [TUS-33-D9]">
      <seq>aaaatagaatactgcaaaaggcccgaacagagttttgttttcgagaggacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128168" stop="121407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127868" g_stop="127614" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="330" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="504" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="586" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121707" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="679" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E374095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127868" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAG</genome_strand>
        <mrna_strand>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300495" ref_strand="+" ref_description="SGN-E300495 [cLET-45-H2]">
      <seq>aaaatagaatactgcaaaaggcccgaacagagttttgttttcgagaggacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128168" stop="122534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127868" g_stop="127614" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="330" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="504" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="570" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E300495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127868" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCT</genome_strand>
        <mrna_strand>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560789" ref_strand="+" ref_description="SGN-E560789 [20499]">
      <seq>ctccacctcgctcttgcacttttcccactaaatattgggtacaaaatagaacactgcaaaaggcccgaacatagttttgcttttgaaagggcttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaagagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagccggaaagggggcttacgtttcaactgagaatggcaccgtttacgcctctctcaccgggttccgttctcttatacctccgccttccgattctgttgaccagagatcaacagttgaagttactggtcataaagcccatggagcagttcctcagcctggttccattgtttttgctagagttactaaggtgatggctagaacggcttcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaattcactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128204" stop="123205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127878" g_stop="127614" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="297" r_length="265" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="372" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="461" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123505" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="523" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E560789" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127878" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGG</genome_strand>
        <mrna_strand>TATTGGGTACAAAATAGAACACTGCAAAAGGCCCGAACATAGTTTTGCTTTTGAAAGGGCTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAAGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCCGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACCGTTTACGCCTCTCTCACCGGGTTCCGTTCTCTTATACCTCCGCCTTCCGATTCTGTTGACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTTGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTCAGCCTGGTTCCATTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCTTCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTCACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="138112" stop="139253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138412" g_stop="138953" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138412" e_stop="138953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGTGTACCTCTATCTGATATGATGGAAAGTGGAACTCCATGCAACCGAACGACTTCTGAGATATAGAGCCTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAATTTGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATATTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="138557" stop="139741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138857" g_stop="139441" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138857" e_stop="139441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTTAGACTCTCCTCGCAACACC-TATCTCGAATCCAGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGTGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATATTGTAAACTACGATGATCCGTATAGACTTCACACTTAA-CCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATTGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="138557" stop="139741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138857" g_stop="139441" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138857" e_stop="139441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTTAGACTCTCCTCGCAACACC-TATCTCGAATCCAGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGTGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATATTGTAAACTACGATGATCCGTATAGACTTCACACTTAA-CCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATTGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="138557" stop="139708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138857" g_stop="139408" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138857" e_stop="139408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTTAGACTCTCCTCGCAACACC-TATCTCGAATCCAGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGTGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATATTGTAAACTACGATGATCCGTATAGACTTCACACTT-AACCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATTGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="141259" stop="140000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140959" g_stop="140300" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140959" e_stop="140300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTGATTTACATTGTGATTTGCTTAACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGATTGACTTCGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAATTTTGTAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGGTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGAGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGATTTCTGTATTGATCTGGATCCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGAAAAGACTTTATTAGACCAAGTGCGTCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="140360" stop="141289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140660" g_stop="140989" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140660" e_stop="140989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATTTGGAGAAAGCCAAGTCATACCCAAAATTACATCGAAGTCAATCATTTCTAGGATAACCAAGTCTACATGAGTATTGCT-CCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTTAAGCAAATCACAATGTAAATCAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="142524" stop="141269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142224" g_stop="141569" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142224" e_stop="141569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACATCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAACTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACATGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAGTTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGATGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGTAACGATTTGGCGTTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAGCACAGTCACCACCTATGACTTAGGCATCATTCTCTAGCTTATTTATGGAGAAGTATTTACCCCGGACTTTGAGGGATCGAAGGGGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCCTATGAGACTAAGTTTCGTGCATTATCCAAGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCATATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAG-CACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="157391" stop="158664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157691" g_stop="158361" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157691" e_stop="158361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCTGTCCTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTA-TTTTAGCTTCTTAGA-TACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGCTTTTAGAAGTTATTGAATTGGTTTTTA-TTAGTGAGTTTAAGTCTTCCGCATTACTTTCTGATGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGAGTGCCAGTCACGACCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCTTTGAGAGGCTATAAGACTTTAGCAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGG--AATAATAGATGTTGA-ATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAA-TTC---CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="157439" stop="158248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157739" g_stop="157957" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157739" e_stop="157957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGCTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="157816" stop="158701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158116" g_stop="158401" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158116" e_stop="158401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCTTTGAGAGGCTATAAGACTTTAGCAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAGCGTCCGAGCCAGCCACTAGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="158181" stop="159328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158475" g_stop="159028" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158475" e_stop="159028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTCCCATCTAGTACTAGGGCGGTGACTCCTCCACCGACTAAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTCCTTACTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGCCTCATTGGAAATAGGTACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTTTGGTTAACTATCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="160219" stop="159061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159919" g_stop="159361" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159919" e_stop="159361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTATGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCTCACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTTTCTGGATTCAAGCATAGTTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="160426" stop="159496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160126" g_stop="159796" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160126" e_stop="159796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTACCAGGCTTGGCTAACGTCACGGTTTTAGCATTGCAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCCACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTATGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>59</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="69492" PGL_stop="66514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69492" e_stop="69005"/>
            <exon e_start="67897" e_stop="66514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69492" e_stop="69005" e_length="488"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="67897" e_stop="66514" e_length="1384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69492" stop="69005"/>
              <exon start="67897" stop="66634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69491" stop="69005"/>
              <exon start="67897" stop="67831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69491" stop="69005"/>
              <exon start="67897" stop="67837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69487" stop="69005"/>
              <exon start="67897" stop="67709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69484" stop="69005"/>
              <exon start="67897" stop="67661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69484" stop="69005"/>
              <exon start="67897" stop="67749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69466" stop="69005"/>
              <exon start="67897" stop="67879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69453" stop="69005"/>
              <exon start="67897" stop="66514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67727" stop="67217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67689" stop="67158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67538" stop="67338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67344" stop="66635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67332" stop="66610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67138" stop="66807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67098" stop="66519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67051" stop="66728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG : GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTATGGTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAGAGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTAATTAC</gDNA_template>
            <first_frame> P  S  S  S  F  I  T  L  S  L  L  I  T  N  S  P  N  H  G  L  R  H  D  L  L  S  C  R  A  L  P  S  S  R  Q  L  S  K  C  H  S  G  R  R  I  H  L  Q  P  L  L  S  C  L  R  V  P  H  K  H  H  L  R  G  G  H  H  I  P  P  L  L  G  L  P  R  L  R  H  A  I  G  I  C  H  V  V  R  G  L  C  P  R  Q  K  H  D  E  Y  N  A  Y  K  R  A  *  C  C  C  W  W  I  V  L  L  S  L  W  F  C  L  C  L  W  S  S  F  *  W  F  H  W  K  T  F  F  W  I  K  R  V  S  F  T  S  F  *  L  *  L  F  S  L  S  M  G  L  C  H  S  C  C  R :   Y  H  K  W  V  H  S  *  K  N  T  I  C  G  L  S  H  L  L  F  I  F  D  R  F  C  V  P  N  C  L  T  L  V  L  V  R  *  W  L  G  Q  C  I  K  N  R  W  *  L  I  I  R  F  G  C  Y  R  F  C  R  V  R  C  C  S  Y  G  W  W  H  C  R  S  M  G  R  F  H  R  R  T  T  N  R  S  V  *  S  V  R  S  V  C  C  P  K  R  P  *  C  L  I  S  C  I  R  Y  F  F  T  M  V  R  L  V  R  I  *  S  W  F  I  L  N  Y  S  *  I  I  R  S  Y  H  K  R  Y  L  L  W  S  V  E  R  D  R  *  D  S  C  H  D  Y  I  G  W  L  Y  R  R  S  D  N  F  V  L  *  E  A  F  S  G  T  L  E  C  S  *  C  M  *  R  F  T  R  W  I  C  S  N  H  V  R  L  C  S  C  *  A  M  G  S  Y  S  L  W  I  Y  R  S  L  G  F  N  W  I  *  R  I  G  S  *  I  K  I  R  R  S  I  R  S  S  T  T  S  W  W  L  R  F  M  G  D  N  I  Y  W  I  I  R  E  K  R  I  C  Q  R  S  I  S  R  I  S  *  *  T  I  W  I  V  Y  G  R  W  W  K  T  I  R  C  T  S  N  S  S  C  C  D  Y  W  M  G  E  C  H  N  G  T  I  V  L  F  V  T  *  V  *  A  I  E  D  I  A  R  R  *  N  S  R  D  G  F  N  K  T  W  R  I  C  I  Y  I  S  *  *  R  *  R  F  I  Y  A  W  I  *  N  D  K  S  *  T  D  *  Y  F  Y  T  *  S  S  K  *  I  C  *  C  G  C  I  T  N  K  *  I  N  K  N  V  T  I  *  N  G  H  L  I  I  K  E  T  S  N  L  K  V  L  *  *  C  D  I  I  G  F  L  I  D  Y  I  Y  I  Y  A  K  Y  F  *  P  K  K  K  G  L  Y  L  F  *  L  Y  D  F  I  V  W  C  L  L  V  C  L  F  I  Y  L  K  S  Y  L  Y  C  S  K  D  V  N  K  *  I  I  N  Y </first_frame>
            <second_frame>  L  L  L  P  S  S  L  S  L  Y  *  L  L  I  L  Q  I  M  A  S  A  M  T  C  S  A  A  E  L  F  P  H  L  G  S  S  A  N  A  T  A  A  A  E  F  I  C  S  R  F  S  A  V  S  E  Y  L  T  N  T  T  Y  A  V  D  T  T  Y  L  L  F  S  A  Y  L  V  F  A  M  Q  L  G  F  A  M  L  C  A  G  S  V  R  A  K  N  T  M  N  I  M  L  T  N  V  L  D  A  A  A  G  G  L  S  Y  Y  L  F  G  F  A  F  A  F  G  A  P  S  N  G  F  I  G  K  H  F  F  G  L  K  E  F  P  S  Q  A  F  D  Y  S  Y  F  L  Y  Q  W  A  F  A  I  A  A  A   : G  I  T  S  G  S  I  A  E  R  T  Q  F  V  A  Y  L  I  Y  S  S  F  L  T  G  F  V  Y  P  I  V  S  H  W  F  W  S  G  D  G  W  A  S  A  S  K  T  D  G  N  L  L  F  G  S  G  V  I  D  F  A  G  S  G  V  V  H  M  V  G  G  I  A  G  L  W  G  A  F  I  E  G  P  R  I  G  R  F  D  R  S  G  R  S  V  A  L  R  G  H  S  A  S  L  V  V  L  G  T  F  L  L  W  F  G  W  Y  G  F  N  P  G  S  F  L  T  I  L  K  S  Y  D  H  T  I  R  G  T  Y  Y  G  Q  W  S  A  I  G  R  T  A  V  T  T  T  L  A  G  C  T  A  A  L  T  T  L  F  C  K  R  L  L  V  G  H  W  N  V  V  D  V  C  N  G  L  L  G  G  F  A  A  I  T  S  G  C  A  V  V  E  P  W  A  A  I  V  C  G  F  I  A  A  W  V  L  I  G  F  N  A  L  A  A  K  L  K  Y  D  D  P  L  E  A  A  Q  L  H  G  G  C  G  S  W  G  I  I  F  T  G  L  F  A  K  K  E  Y  V  N  E  V  Y  P  G  F  P  N  R  P  Y  G  L  F  M  G  G  G  G  K  L  L  G  A  Q  V  I  Q  V  V  V  I  I  G  W  V  S  V  T  M  G  P  L  F  Y  L  L  H  K  F  K  L  L  R  I  S  R  D  D  E  T  A  G  M  D  L  T  R  H  G  G  F  A  Y  I  Y  H  D  E  D  E  G  S  S  M  P  G  F  K  M  T  R  V  E  P  T  N  T  S  T  P  D  H  Q  N  R  S  V  N  V  V  V  *  Q  I  N  K  *  I  K  M  L  L  Y  R  M  V  T  L  *  L  R  K  R  Q  I  S  K  C  F  N  N  V  I  L  L  V  S  *  *  T  I  Y  I  Y  M  P  N  I  F  D  Q  K  K  K  D  C  T  Y  F  S  F  M  T  L  L  Y  G  V  F  L  F  V  C  L  F  I  *  R  V  I  C  I  V  L  K  M  *  I  N  R  L  L  I   </second_frame>
            <third_frame>   F  F  F  L  H  H  S  L  S  I  N  Y  *  F  S  K  S  W  P  P  P  *  L  A  Q  L  P  S  S  S  L  I  S  A  A  Q  Q  M  P  Q  R  P  Q  N  S  S  A  A  A  S  Q  L  S  Q  S  T  S  Q  T  P  P  T  R  W  T  P  H  T  S  S  S  R  L  T  S  S  S  P  C  N  W  D  L  P  C  C  A  R  A  L  S  A  P  K  T  R  *  I  *  C  L  Q  T  C  L  M  L  L  L  V  D  C  L  I  I  S  L  V  L  P  L  P  L  E  L  L  L  M  V  S  L  E  N  I  F  L  D  *  K  S  F  L  H  K  L  L  T  I  A  I  F  F  I  N  G  P  L  P  *  L  L  Q  :  V  S  Q  V  G  P  *  L  K  E  H  N  L  W  L  I  S  F  T  L  H  F  *  P  V  L  C  T  Q  L  S  H  I  G  S  G  P  V  M  V  G  P  V  H  Q  K  P  M  V  T  Y  Y  S  V  R  V  L  S  I  L  P  G  P  V  L  F  I  W  L  V  A  L  P  V  Y  G  A  L  S  S  K  D  H  E  S  V  G  L  I  G  P  V  G  L  L  P  *  E  A  I  V  P  H  *  L  Y  *  V  L  F  Y  Y  G  S  V  G  T  D  L  I  L  V  H  S  *  L  F  L  N  H  T  I  I  P  *  E  V  L  I  M  V  S  G  A  R  S  V  G  Q  L  S  R  L  H  W  L  V  V  P  P  L  *  Q  L  C  F  V  R  G  F  *  W  D  I  G  M  *  L  M  Y  V  T  V  Y  *  V  D  L  Q  Q  S  R  Q  V  V  Q  L  L  S  H  G  Q  L  *  F  V  D  L  S  Q  L  G  F  *  L  D  L  T  H  W  Q  L  N  *  N  T  T  I  H  *  K  Q  H  N  F  M  V  V  A  V  H  G  G  *  Y  L  L  D  Y  S  R  K  K  N  M  S  T  K  Y  I  Q  D  F  L  I  D  H  M  D  C  L  W  E  V  V  E  N  Y  *  V  H  K  *  F  K  L  L  *  L  L  D  G  *  V  S  Q  W  D  H  C  F  I  C  Y  I  S  L  S  Y  *  G  Y  R  E  T  M  K  Q  Q  G  W  I  *  Q  D  M  E  D  L  H  I  Y  I  M  M  K  M  K  V  H  L  C  L  D  L  K  *  Q  E  L  N  R  L  I  L  L  H  L  I  I  K  I  D  L  L  M  W  L  Y  N  K  *  I  N  K  *  K  C  Y  Y  I  E  W  S  P  Y  N  *  G  N  V  K  S  Q  S  A  L  I  M  *  Y  Y  W  F  L  D  R  L  Y  I  Y  I  C  Q  I  F  L  T  K  K  K  R  I  V  L  I  L  A  L  *  L  Y  C  M  V  S  S  C  L  F  V  Y  L  F  E  E  L  S  V  L  F  *  R  C  K  *  I  D  Y  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69458" stop="69005"/>
                    <exon start="67897" stop="66789"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLILQIMASAMTCSAAELFPHLGSSANATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGKHFFGLKEFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSGDGWASASKTDGNLLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLTILKSYDHTIRGTYYGQWSAIGRTAVTTTLAGCTAALTTLFCKRLLVGHWNVVDVCNGLLGGFAAITSGCAVVEPWAAIVCGFIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRPYGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHDEDEGSSMPGFKMTRVEPTNTSTPDHQNRSVNVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="119965" PGL_stop="109767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119965" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117903"/>
            <exon e_start="117805" e_stop="117729"/>
            <exon e_start="112289" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.465" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119965" e_stop="119671" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118035" e_stop="117903" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.465" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117805" e_stop="117729" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.971">
            <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112289" e_stop="112191" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="10" e_score="0.979">
            <gDNA_exon_boundary e_start="110194" e_stop="109767" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119965" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119918" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119894" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119894" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
              <exon start="112289" stop="112238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119881" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119821" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119803" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117801" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112222" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG : CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</gDNA_template>
            <first_frame> N  M  A  L  A  Q  L  Q  L  S  K  N  N  T  S  N  S  L  L  L  C  F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  S :   I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : D  C  *  S  Y  D  K  D  W  K  V  V  V  C  K  S  S  I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L  V  I  F  S  *  C  V  S  S  R  G  M  L  L  E  E  F  G  C  F  V  L  S  L  C  *  H  R  N  T  C  L  I  L  I  M  S  S  V  L  S  L  E  L  Y  D  V </first_frame>
            <second_frame>  I  W  L  S  P  N  S  S  C  Q  K  I  I  L  V  I  L  F  S  C  A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S   : A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  I  A  K  V  M  I  K  T  G  K  L  L  S  A  S  P  V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S  L  *  S  S  R  D  V  F  P  Q  E  G  C  F  L  R  N  L  V  V  L  C  C  L  S  V  S  I  E  T  L  V  S  Y  *  *  C  Q  V  S  Y  L  *  N  F  M  M   </second_frame>
            <third_frame>   Y  G  S  R  P  T  P  V  V  K  K  *  Y  *  *  F  S  S  L  V  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  :  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  R :   L  L  K  L  *  *  R  L  E  S  C  C  L  Q  V  Q  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  C  D  L  L  V  M  C  F  L  K  R  D  A  S  *  G  I  W  L  F  C  V  V  S  L  L  A  *  K  H  L  S  H  I  D  N  V  K  C  L  I  F  R  T  L  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119964" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117903"/>
                    <exon start="117805" stop="117729"/>
                    <exon start="112289" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLSPNSSCQKIILVILFSCASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSAFGRRLLSAGKRFQSMGQYGEGEVQKIAKVMIKTGKLLSASPVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119965" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117729"/>
            <exon e_start="112289" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.971" e_score="0.987"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119965" e_stop="119671" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="118035" e_stop="117729" e_length="307"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.971">
            <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112289" e_stop="112191" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="8" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="9" e_score="0.979">
            <gDNA_exon_boundary e_start="110194" e_stop="109767" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119965" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119918" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119881" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119850" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117729"/>
              <exon start="112289" stop="112249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117801" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112222" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</gDNA_template>
            <first_frame> N  M  A  L  A  Q  L  Q  L  S  K  N  N  T  S  N  S  L  L  L  C  F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  R  Q  E  K  A  Y  N  Y  D  T  L  L  L  A  L  H  K  Q  I  E  F  L  F  P  P  E  F  H  S  Y  T  S  *  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  R :   L  L  K  L  *  *  R  L  E  S  C  C  L  Q  V  Q  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  C  D  L  L  V  M  C  F  L  K  R  D  A  S  *  G  I  W  L  F  C  V  V  S  L  L  A  *  K  H  L  S  H  I  D  N  V  K  C  L  I  F  R  T  L  *  C  </first_frame>
            <second_frame>  I  W  L  S  P  N  S  S  C  Q  K  I  I  L  V  I  L  F  S  C  A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S  G  K  K  K  P  T  T  M  I  L  Y  F  L  P  C  T  S  K  L  S  S  F  F  H  L  N  F  I  L  I  L  V  S  I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : D  C  *  S  Y  D  K  D  W  K  V  V  V  C  K  S  S  I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L  V  I  F  S  *  C  V  S  S  R  G  M  L  L  E  E  F  G  C  F  V  L  S  L  C  *  H  R  N  T  C  L  I  L  I  M  S  S  V  L  S  L  E  L  Y  D  V </second_frame>
            <third_frame>   Y  G  S  R  P  T  P  V  V  K  K  *  Y  *  *  F  S  S  L  V  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  A  R  K  S  L  Q  L  *  Y  F  T  S  C  L  A  Q  A  N  *  V  P  F  S  T  *  I  S  F  L  Y  *  L  A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  I  A  K  V  M  I  K  T  G  K  L  L  S  A  S  P  V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S  L  *  S  S  R  D  V  F  P  Q  E  G  C  F  L  R  N  L  V  V  L  C  C  L  S  V  S  I  E  T  L  V  S  Y  *  *  C  Q  V  S  Y  L  *  N  F  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119964" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLSPNSSCQKIILVILFSCASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSGKKKPTTMILYFLPCTSKLSSFFHLNFILILVSIWKALVISWKKVPVHGTIWRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119965" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117903"/>
            <exon e_start="117809" e_stop="117729"/>
            <exon e_start="112240" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.465" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119965" e_stop="119671" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118035" e_stop="117903" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.465" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117902" i_stop="117810" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117809" e_stop="117729" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117728" i_stop="112241" i_length="5488"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112240" e_stop="112191" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.979">
            <gDNA_exon_boundary e_start="111796" e_stop="111555" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119965" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119918" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119881" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119182" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117809" stop="117729"/>
              <exon start="112240" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG : TTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : TATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACT</gDNA_template>
            <first_frame> N  M  A  L  A  Q  L  Q  L  S  K  N  N  T  S  N  S  L  L  L  C  F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  S :   *  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  S :   I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R  S  V  *  I  F  A  S  F  L  P  L  Y  Y  L  F  I  S  L  F  I  F  L  P  H  R  L  A  L  L  G  E  G  E  P  L  G  C  L  M  G  L  I  T </first_frame>
            <second_frame>  I  W  L  S  P  N  S  S  C  Q  K  I  I  L  V  I  L  F  S  C  A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S   : V  S  I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  V  C  K  S  L  P  P  F  F  P  Y  I  I  C  L  F  L  S  L  S  S  F  P  T  G  W  L  F  W  G  R  G  S  H  L  V  V  *  W  G  *  S   </second_frame>
            <third_frame>   Y  G  S  R  P  T  P  V  V  K  K  *  Y  *  *  F  S  S  L  V  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  :  L  A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K  C  V  N  L  C  L  L  S  S  L  I  L  F  V  Y  F  S  L  Y  L  P  S  P  Q  A  G  S  F  G  G  G  G  A  T  W  L  S  D  G  A  N  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119964" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117903"/>
                    <exon start="117809" stop="117739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLSPNSSCQKIILVILFSCASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSVSIWKALVISWKKVPVHGTIWRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117738" stop="117729"/>
                    <exon start="112240" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAEVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="119904" e_stop="119680"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117903"/>
            <exon e_start="117805" e_stop="117729"/>
            <exon e_start="112289" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.465" acc_prob="0.000" e_score="0.947"/>
          <exon-intron don_prob="0.926" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119904" e_stop="119680" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119679" i_stop="119579" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="0.947">
            <gDNA_exon_boundary e_start="118035" e_stop="117903" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.465" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117805" e_stop="117729" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.971">
            <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112289" e_stop="112191" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="10" e_score="0.979">
            <gDNA_exon_boundary e_start="110194" e_stop="109767" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119904" stop="119680"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117801" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112222" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAG : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG : CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</gDNA_template>
            <first_frame> A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S   : A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  I  A  K  V  M  I  K  T  G  K  L  L  S  A  S  P  V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S  L  *  S  S  R  D  V  F  P  Q  E  G  C  F  L  R  N  L  V  V  L  C  C  L  S  V  S  I  E  T  L  V  S  Y  *  *  C  Q  V  S  Y  L  *  N  F  M  M   </first_frame>
            <second_frame>  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  :  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  R :   L  L  K  L  *  *  R  L  E  S  C  C  L  Q  V  Q  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  C  D  L  L  V  M  C  F  L  K  R  D  A  S  *  G  I  W  L  F  C  V  V  S  L  L  A  *  K  H  L  S  H  I  D  N  V  K  C  L  I  F  R  T  L  *  C  </second_frame>
            <third_frame>   F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T   : G  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  S :   I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : D  C  *  S  Y  D  K  D  W  K  V  V  V  C  K  S  S  I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L  V  I  F  S  *  C  V  S  S  R  G  M  L  L  E  E  F  G  C  F  V  L  S  L  C  *  H  R  N  T  C  L  I  L  I  M  S  S  V  L  S  L  E  L  Y  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119904" stop="119680"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117903"/>
                    <exon start="117805" stop="117729"/>
                    <exon start="112289" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSAFGRRLLSAGKRFQSMGQYGEGEVQKIAKVMIKTGKLLSASPVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="119918" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="112289" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="0.879"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.979"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="0.960"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="0.958"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.989"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="119918" e_stop="119671" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="119148" i_stop="112290" i_length="6859"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="112289" e_stop="112191" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="110194" e_stop="109767" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119918" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119562" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433156" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112222" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</gDNA_template>
            <first_frame> F  S  S  L  V  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  R :   L  L  K  L  *  *  R  L  E  S  C  C  L  Q  V  Q  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  C  D  L  L  V  M  C  F  L  K  R  D  A  S  *  G  I  W  L  F  C  V  V  S  L  L  A  *  K  H  L  S  H  I  D  N  V  K  C  L  I  F  R  T  L  *  C  </first_frame>
            <second_frame>  S  L  L  L  C  F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : D  C  *  S  Y  D  K  D  W  K  V  V  V  C  K  S  S  I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L  V  I  F  S  *  C  V  S  S  R  G  M  L  L  E  E  F  G  C  F  V  L  S  L  C  *  H  R  N  T  C  L  I  L  I  M  S  S  V  L  S  L  E  L  Y  D  V </second_frame>
            <third_frame>   L  F  S  C  A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  I  A  K  V  M  I  K  T  G  K  L  L  S  A  S  P  V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S  L  *  S  S  R  D  V  F  P  Q  E  G  C  F  L  R  N  L  V  V  L  C  C  L  S  V  S  I  E  T  L  V  S  Y  *  *  C  Q  V  S  Y  L  *  N  F  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119916" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="112289" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSCASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVEIAKVMIKTGKLLSASPVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="127888" PGL_stop="120395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127888" e_stop="127614"/>
            <exon e_start="126706" e_stop="126632"/>
            <exon e_start="125342" e_stop="125254"/>
            <exon e_start="123566" e_stop="123482"/>
            <exon e_start="122899" e_stop="122818"/>
            <exon e_start="121799" e_stop="121405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127888" e_stop="127614" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126706" e_stop="126632" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.994">
            <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125342" e_stop="125254" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.898">
            <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123566" e_stop="123482" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.968">
            <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122899" e_stop="122818" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="121799" e_stop="121405" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127888" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127878" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127869" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127868" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127868" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127861" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127832" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127824" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127815" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127788" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126680" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123531" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122857" stop="122818"/>
              <exon start="121799" stop="121411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121635" stop="121411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTAAATAGTATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG : AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA : GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG : GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG : CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG : GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAGATGTTA</gDNA_template>
            <first_frame> N  *  I  V  L  G  T  K  *  N  T  A  K  G  P  N  R  V  L  F  S  R  G  L  V  *  V  A  V  A  G  A  *  R  W  L  W  K  L  K  P  R  S  W  S  R  Q  D  K  Y  *  V  K  H  H  S  *  K  L  E  R  G  L  T  F  Q  L  R  M  A  L  F  T  P  L  L  P  G  S  V  L  L  Y  L  R  I  P  T  L  L  I  R :   D  Q  Q  S  K  L  L  V  I  K  P  M  E  Q  F  L  S  L  V  P  L  F  L  L  E :   L  L  R  *  W  L  E  R  H  R  Q  T  *  C  V  L  I  P  N  L  C  V  R  N  L  L  A  L  L   : G  N  K  M  S  E  Q  L  R  L  T  K  S  T  C  I  C  P  S  D  R  V  I  L  F  V  H  W  C :   Y  H  L  E  M  Q  E  H  I  I  C  Q  P  Q  K  M  S  W  V  L  Y  L  L  K  V  Q  L  :  V  V  P  W  F  Q  L  V  G  Q  K  C  S  A  L  *  L  V  K  *  N  R  E  R  W  P  K  L  K  L  E  *  I  K  S  D  Y  V  A  L  N  C  N  H  R  R  R  W  V  Q  E  A  A  T  K  L  F  F  A  L  V  L  Y  I  *  E  F  D  R  F  A  P  L  F  C  C  A  L  Y  I  L  L  E  C  R  G  L  S  T  F  R  P  P  G  A  S  L  G  I  *  *  C  R  S  S  S  V  K  *  C  L  F  C  I  E  H  F  H  W  T  I  F  *  S  V  T  Y  F  L  R  C   </first_frame>
            <second_frame>  T  K  *  Y  W  V  Q  N  R  I  L  Q  K  A  R  T  E  F  C  F  R  E  D  L  F  E  *  P  L  L  E  H  D  D  G  Y  G  S  *  N  P  G  V  G  H  A  R  T  S  I  R  *  S  I  T  V  E  S  W  K  G  G  L  R  F  N  *  E  W  H  C  L  R  L  S  Y  R  V  P  F  S  Y  T  S  A  F  R  R  C  *  S   : E  I  N  S  R  S  Y  W  S  *  S  P  W  S  S  S  *  A  W  F  R  C  F  C  *   : S  Y  *  G  D  G  *  N  G  I  G  R  H  S  V  C  *  F  Q  I  C  A  *  E  I  Y  W  H  Y  *  :  A  T  R  C  Q  S  N  *  D  *  Q  S  R  H  A  F  V  L  P  T  G  *  Y  Y  S  C  I  G   : A  I  T  W  R  C  K  S  I  L  S  V  N  R  K  K  *  A  G  C  C  I  C  *  K  C  S  W :   W  Y  H  G  S  N  *  L  D  R  N  A  V  P  S  N  W  S  S  R  T  A  K  G  G  Q  S  *  S  L  S  R  S  N  Q  I  M  L  L  L  T  A  T  T  G  G  G  G  C  R  R  Q  L  P  S  F  S  L  L  L  Y  Y  T  F  K  S  L  I  D  L  L  L  Y  F  V  V  R  Y  T  F  C  *  N  V  E  D  F  L  L  S  A  H  Q  G  Q  V  W  G  Y  D  S  V  G  Q  A  Q  *  S  N  V  Y  F  V  L  S  T  S  I  G  P  F  F  N  L  L  H  I  F  *  D  V  </second_frame>
            <third_frame>   L  N  S  I  G  Y  K  I  E  Y  C  K  R  P  E  Q  S  F  V  F  E  R  T  C  L  S  S  R  C  W  S  M  T  M  A  M  E  A  E  T  Q  E  L  V  T  P  G  Q  V  L  G  K  A  S  Q  L  K  A  G  K  G  A  Y  V  S  T  E  N  G  T  V  Y  A  S  L  T  G  F  R  S  L  I  P  P  H  S  D  A  V  D  Q  :  R  S  T  V  E  V  T  G  H  K  A  H  G  A  V  P  K  P  G  S  V  V  F  A  R  :  V  T  K  V  M  A  R  T  A  S  A  D  I  V  C  V  D  S  K  S  V  R  E  K  F  T  G  I  I  R :   Q  Q  D  V  R  A  T  E  I  D  K  V  D  M  H  L  S  F  R  P  G  D  I  I  R  A  L  V  :  L  S  L  G  D  A  R  A  Y  Y  L  S  T  A  K  N  E  L  G  V  V  S  A  E  S  A  A   : G  G  T  M  V  P  I  S  W  T  E  M  Q  C  P  L  T  G  Q  V  E  P  R  K  V  A  K  V  E  A  *  V  D  Q  I  R  L  C  C  S  *  L  Q  P  Q  E  E  V  G  A  G  G  S  Y  Q  A  F  L  C  S  C  I  I  H  L  R  V  *  *  I  C  S  F  I  L  L  C  V  I  H  F  V  R  M  *  R  T  F  Y  F  P  P  T  R  G  K  F  G  D  M  I  V  *  V  K  L  S  K  V  M  F  I  L  Y  *  A  L  P  L  D  H  F  L  I  C  Y  I  F  F  E  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127886" stop="127614"/>
                    <exon start="126706" stop="126632"/>
                    <exon start="125342" stop="125254"/>
                    <exon start="123566" stop="123482"/>
                    <exon start="122899" stop="122818"/>
                    <exon start="121799" stop="121708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNSIGYKIEYCKRPEQSFVFERTCLSSRCWSMTMAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPHSDAVDQRSTVEVTGHKAHGAVPKPGSVVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWTEMQCPLTGQVEPRKVAKVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127878" e_stop="127614"/>
            <exon e_start="126706" e_stop="126632"/>
            <exon e_start="125342" e_stop="125254"/>
            <exon e_start="123566" e_stop="123482"/>
            <exon e_start="122899" e_stop="122818"/>
            <exon e_start="121799" e_stop="121448"/>
            <exon e_start="120451" e_stop="120395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.614"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127878" e_stop="127614" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126706" e_stop="126632" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.994">
            <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125342" e_stop="125254" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.898">
            <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123566" e_stop="123482" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.968">
            <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122899" e_stop="122818" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121799" e_stop="121448" e_length="352"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="121447" i_stop="120452" i_length="996"/>
          </intron>
          <exon e_serial="7" e_score="0.614">
            <gDNA_exon_boundary e_start="120451" e_stop="120395" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127878" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127869" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127868" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127868" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127861" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127832" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127815" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127788" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126680" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126661" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121448"/>
              <exon start="120451" stop="120395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG : AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA : GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG : GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG : CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG : GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCC : TTAAAAATTTAAAAATTATAAAAAAAAACTTTTAAATTAGACTAGAAAAATTAAAGA</gDNA_template>
            <first_frame> Y  W  V  Q  N  R  I  L  Q  K  A  R  T  E  F  C  F  R  E  D  L  F  E  *  P  L  L  E  H  D  D  G  Y  G  S  *  N  P  G  V  G  H  A  R  T  S  I  R  *  S  I  T  V  E  S  W  K  G  G  L  R  F  N  *  E  W  H  C  L  R  L  S  Y  R  V  P  F  S  Y  T  S  A  F  R  R  C  *  S   : E  I  N  S  R  S  Y  W  S  *  S  P  W  S  S  S  *  A  W  F  R  C  F  C  *   : S  Y  *  G  D  G  *  N  G  I  G  R  H  S  V  C  *  F  Q  I  C  A  *  E  I  Y  W  H  Y  *  :  A  T  R  C  Q  S  N  *  D  *  Q  S  R  H  A  F  V  L  P  T  G  *  Y  Y  S  C  I  G   : A  I  T  W  R  C  K  S  I  L  S  V  N  R  K  K  *  A  G  C  C  I  C  *  K  C  S  W :   W  Y  H  G  S  N  *  L  D  R  N  A  V  P  S  N  W  S  S  R  T  A  K  G  G  Q  S  *  S  L  S  R  S  N  Q  I  M  L  L  L  T  A  T  T  G  G  G  G  C  R  R  Q  L  P  S  F  S  L  L  L  Y  Y  T  F  K  S  L  I  D  L  L  L  Y  F  V  V  R  Y  T  F  C  *  N  V  E  D  F  L  L  S  A  H  Q  G  Q  V  W  G  Y  D  S  V  G  Q  A  Q  *  S  N  V  Y  F  V  L  S  T  S  :  L  K  I  *  K  L  *  K  K  T  F  K  L  D  *  K  N  *  R </first_frame>
            <second_frame>  I  G  Y  K  I  E  Y  C  K  R  P  E  Q  S  F  V  F  E  R  T  C  L  S  S  R  C  W  S  M  T  M  A  M  E  A  E  T  Q  E  L  V  T  P  G  Q  V  L  G  K  A  S  Q  L  K  A  G  K  G  A  Y  V  S  T  E  N  G  T  V  Y  A  S  L  T  G  F  R  S  L  I  P  P  H  S  D  A  V  D  Q  :  R  S  T  V  E  V  T  G  H  K  A  H  G  A  V  P  K  P  G  S  V  V  F  A  R  :  V  T  K  V  M  A  R  T  A  S  A  D  I  V  C  V  D  S  K  S  V  R  E  K  F  T  G  I  I  R :   Q  Q  D  V  R  A  T  E  I  D  K  V  D  M  H  L  S  F  R  P  G  D  I  I  R  A  L  V  :  L  S  L  G  D  A  R  A  Y  Y  L  S  T  A  K  N  E  L  G  V  V  S  A  E  S  A  A   : G  G  T  M  V  P  I  S  W  T  E  M  Q  C  P  L  T  G  Q  V  E  P  R  K  V  A  K  V  E  A  *  V  D  Q  I  R  L  C  C  S  *  L  Q  P  Q  E  E  V  G  A  G  G  S  Y  Q  A  F  L  C  S  C  I  I  H  L  R  V  *  *  I  C  S  F  I  L  L  C  V  I  H  F  V  R  M  *  R  T  F  Y  F  P  P  T  R  G  K  F  G  D  M  I  V  *  V  K  L  S  K  V  M  F  I  L  Y  *  A  L  P :   *  K  F  K  N  Y  K  K  K  L  L  N  *  T  R  K  I  K   </second_frame>
            <third_frame>   L  G  T  K  *  N  T  A  K  G  P  N  R  V  L  F  S  R  G  L  V  *  V  A  V  A  G  A  *  R  W  L  W  K  L  K  P  R  S  W  S  R  Q  D  K  Y  *  V  K  H  H  S  *  K  L  E  R  G  L  T  F  Q  L  R  M  A  L  F  T  P  L  L  P  G  S  V  L  L  Y  L  R  I  P  T  L  L  I  R :   D  Q  Q  S  K  L  L  V  I  K  P  M  E  Q  F  L  S  L  V  P  L  F  L  L  E :   L  L  R  *  W  L  E  R  H  R  Q  T  *  C  V  L  I  P  N  L  C  V  R  N  L  L  A  L  L   : G  N  K  M  S  E  Q  L  R  L  T  K  S  T  C  I  C  P  S  D  R  V  I  L  F  V  H  W  C :   Y  H  L  E  M  Q  E  H  I  I  C  Q  P  Q  K  M  S  W  V  L  Y  L  L  K  V  Q  L  :  V  V  P  W  F  Q  L  V  G  Q  K  C  S  A  L  *  L  V  K  *  N  R  E  R  W  P  K  L  K  L  E  *  I  K  S  D  Y  V  A  L  N  C  N  H  R  R  R  W  V  Q  E  A  A  T  K  L  F  F  A  L  V  L  Y  I  *  E  F  D  R  F  A  P  L  F  C  C  A  L  Y  I  L  L  E  C  R  G  L  S  T  F  R  P  P  G  A  S  L  G  I  *  *  C  R  S  S  S  V  K  *  C  L  F  C  I  E  H  F   : L  K  N  L  K  I  I  K  K  N  F  *  I  R  L  E  K  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127877" stop="127614"/>
                    <exon start="126706" stop="126632"/>
                    <exon start="125342" stop="125254"/>
                    <exon start="123566" stop="123482"/>
                    <exon start="122899" stop="122818"/>
                    <exon start="121799" stop="121708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGYKIEYCKRPEQSFVFERTCLSSRCWSMTMAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPHSDAVDQRSTVEVTGHKAHGAVPKPGSVVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWTEMQCPLTGQVEPRKVAKVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="138412" PGL_stop="139441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138412" e_stop="139441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="138412" e_stop="139441" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138412" stop="138953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138857" stop="139441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138857" stop="139441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138857" stop="139408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGTGTACCTCTATCTGATATGATGGAAAGTGGAACTCCATGCAACCGAACGACTTCTGAGATATAGAGCCTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAATTTGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATATTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTTAGACTCTCCTCGCAACACCTATCTCGAATCCAGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGTGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATATTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATTGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  L  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  I  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  I  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  Y  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  L  I  F  A  S  L  D  S  P  R  N  T  Y  L  E  S  R  S  V  S  H  Q  *  T  A  F  L  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  L  V  L  P  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  G  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  L  S  E  *  R  H  I  V  N  Y  D  D  P  Y  R  L  H  T  *  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  C  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  I  V  Y  L  Y  L  I  *  W  K  V  E  L  H  A  T  E  R  L  L  R  Y  R  A  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  I  C  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  *  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  I  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  L  F  P  *  F  S  K  H  P  P  R  *  F  L  L  L  *  T  L  L  A  T  P  I  S  N  P  D  Q  F  L  I  S  K  L  L  S  F  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  V  S  R  N  L  Q  V  G  *  T  S  H  A  P  C  L  S  T  *  S  I  C  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  L  N  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  L  W  V  G  *  L  R  S  C  T  F  N  C </second_frame>
            <third_frame>   S  M  Q  C  S  P  K  L  R  S  K  L  C  T  S  I  *  Y  D  G  K  W  N  S  M  Q  P  N  D  F  *  D  I  E  P  G  *  L  L  C  I  V  S  H  L  N  R  N  E  V  S  R  L  S  *  F  V  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  R  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  T  P  P  K  I  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  S  S  L  N  S  Q  N  T  L  L  V  D  F  C  F  F  R  L  S  S  Q  H  L  S  R  I  Q  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  S  T  S  S  L  I  K  S  L  A  R  V  *  T  S  L  A  N  G  C  L  E  T  C  K  W  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  H  I  D  N  V  S  I  A  L  M  Q  T  L  L  Q  P  T  P  N  C  G  S  D  N  Y  V  H  A  P  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138849" stop="139115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYSSLNSQNTLLVDFCFFRLSSQHLSRIQISFSSVNCFPLILSRKEDLASTQAKNPPFSSTSSLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138579" stop="138803"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVNNYPNGVILTHCLWKTNHEVHCNSLPLPFRNRHSLKCPSRPLVFILYLLTIRALSNKINNVTLHPTPPKILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="140959" PGL_stop="140300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140959" e_stop="140300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="140959" e_stop="140300" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140959" stop="140300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTGATTTACATTGTGATTTGCTTAACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGATTGACTTCGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAATTTTGTAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGGTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGAGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGATTTCTGTATTGATCTGGATCCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGAAAAGACTTTATTAGACCAAGTGCGTCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  D  L  H  C  D  L  L  N  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  A  I  L  M  *  T  W  L  S  *  K  *  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  *  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  S  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  L  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  I  S  V  L  I  W  I  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  E  K  T  L  L  D  Q  V  R  P  L  G </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  I  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  E  Q  Y  S  C  R  L  G  Y  P  R  N  D  *  L  R  C  N  F  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  G  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  C  F  D  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  F  L  Y  *  S  G  S  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  R  K  R  L  Y  *  T  K  C  V  P  L   </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  F  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  C  G  S  N  T  H  V  D  L  V  I  L  E  M  I  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  V  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  V  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  E  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  D  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  D  F  I  R  P  S  A  S  P  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140822" stop="140301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSCDFCGSNTHVDLVILEMIDFDVILGMTWLSPNFVILDCNAKTVTLAKPGTDPVVWEGDYTSTPVRIISFLRAKRMVSKECLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLDPGTRPISIPPYRMAPAELRELKAQLQELLGKDFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="140660" PGL_stop="140989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140660" e_stop="140989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="140660" e_stop="140989" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140660" stop="140989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATTTGGAGAAAGCCAAGTCATACCCAAAATTACATCGAAGTCAATCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTTAAGCAAATCACAATGTAAATCAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  K  L  H  R  S  Q  S  F  L  G  *  P  S  L  H  E  Y  C  S  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  I  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  Y  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  L  S  K  S  Q  C  K  S  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  S  I  I  S  R  I  T  K  S  T  *  V  L  L  P  Q  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  *  A  N  H  N  V  N  Q  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140772" stop="140987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNQVYMSIAPTKVTRQDLYTFSTITDSPTGVETRIGMLSKSQCKSRPVANEEDTYENVDPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="142224" PGL_stop="141569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142224" e_stop="141569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="142224" e_stop="141569" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142224" stop="141569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACATCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAACTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACATGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAGTTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGATGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGTAACGATTTGGCGTTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAGCACAGTCACCACCTATGACTTAGGCATCATTCTCTAGCTTATTTATGGAGAAGTATTTACCCCGGACTTTGAGGGATCGAAGGGGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCCTATGAGACTAAGTTTCGTGCATTATCCAAGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCATATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  G  *  L  H  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  S  *  N  L  Q  F  S  R  V  L  N  L  M  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  A  *  C  N  D  L  A  L  S  L  *  P  I  S  F  R  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  H  S  H  H  L  *  L  R  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  I  E  G  G  M  S  S  *  A  *  S  K  A  R  C  R  L  L  P  M  R  L  S  F  V  H  Y  P  S  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  I  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  I  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  N  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  V  D  Y  M  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  V  E  T  S  S  F  Q  G  C  *  I  *  *  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  V  T  I  W  R  *  V  C  D  L  S  V  S  G  E  R  Q  N  V  V  A  V  I  C  *  V  S  T  S  T  V  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  F  T  P  D  F  E  G  S  K  G  G  *  V  P  E  P  R  A  R  Q  D  V  G  Y  C  L  *  D  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  Y  S  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  S  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  T  V  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  W  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  D  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  *  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  S  P  P  M  T  *  A  S  F  S  S  L  F  M  E  K  Y  L  P  R  T  L  R  D  R  R  G  D  E  F  L  S  L  E  Q  G  K  M  S  V  T  A  Y  E  T  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  H  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142222" stop="141908"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQTSPVFSAPAPQVPGVQHATVVAPRMDASLEIGTFPRLTTWPIMTSDQHELFSKFLKLKPPVFKGAESDDAYDFLVDCHELLHKMGIV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141802" stop="141569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFSSLFMEKYLPRTLRDRRGDEFLSLEQGKMSVTAYETKFRALSKYATQLCFSPQERIRRFVKGLRSDLHIPALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="157691" PGL_stop="158401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="157691" e_stop="158401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="157691" e_stop="158401" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157691" stop="158361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157739" stop="157957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158116" stop="158401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCTGTCCTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGCTTTTAGAAGTTATTGAATTGGTTTTTATTAGTGAGTTTAAGTCTTCCGCATTACTTTCTGATGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGAGTGCCAGTCACGACCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCTTTGAGAGGCTATAAGACTTTAGCAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAGCGTCCGAGCCAGCCACTAGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  T  C  C  P  L  Q  L  N  R  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  L  C  I  L  A  S  *  I  L  L  D  *  *  F  E  D  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  L  L  E  V  I  E  L  V  F  I  S  E  F  K  S  S  A  L  L  S  D  D  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  S  A  S  H  D  P  I  W  V  V  T  N  L  V  S  E  H  *  V  C  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  A  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  P  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  S  K  R  A  V  L  F  N  S  T  A  T  L  A  S  L  H  Y  S  G  F  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  Y  V  F  *  L  L  R  Y  S  *  I  S  N  L  R  I  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L  N  W  F  L  L  V  S  L  S  L  P  H  Y  F  L  M  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  *  V  P  V  T  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  I  F  L  *  E  A  I  R  L  *  Q  N  F  I  L  S  F  F  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  T  G  K  T  R  S  V  R  A  S  H  *  G  C   </second_frame>
            <third_frame>   A  N  V  L  S  S  S  T  Q  P  Q  L  *  P  V  F  I  T  P  D  F  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  T  L  R  L  V  I  *  G  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  A  F  R  S  Y  *  I  G  F  Y  *  *  V  *  V  F  R  I  T  F  *  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  E  C  Q  S  R  P  D  L  G  R  D  K  L  G  I  R  A  L  G  L  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  F  F  F  E  R  L  *  D  F  S  K  I  S  F  F  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  E  A  S  E  P  A  T  R  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158165" stop="158401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLAKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRQDKKRPSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="158475" PGL_stop="159028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158475" e_stop="159028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="158475" e_stop="159028" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158475" stop="159028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCGTCCCATCTAGTACTAGGGCGGTGACTCCTCCACCGACTAAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTCCTTACTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGCCTCATTGGAAATAGGTACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTTTGGTTAACTATCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  T  T  T  P  T  Y  P  R  D  D  K  S  G  P  Y  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  L  I  G  N  R  Y  V  S  S  S  D  Y  R  A  D  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  F  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  V  P  S  S  T  R  A  V  T  P  P  P  T  K  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  L  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  N  Y  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   P  S  H  L  V  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  Y  H  P  N  L  P  Q  R  *  *  I  R  S  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  L  W  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  V  R  F  L  V  *  L  Q  G  R  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  I  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158476" stop="159027"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVPSSTRAVTPPPTKEVVREGEEGETEQVQNEELPPQPTPEMINQVLTYLSGLSDQGQTPPVFSAPAPQALEVQHAATMAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVNYHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="160126" PGL_stop="159361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160126" e_stop="159361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="160126" e_stop="159361" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160126" stop="159796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159919" stop="159361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTACCAGGCTTGGCTAACGTCACGGTTTTAGCATTGCAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCCACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTATGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCTCACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTTTCTGGATTCAAGCATAGTTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> D  L  Y  Q  A  W  L  T  S  R  F  *  H  C  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  P  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  Y  D  H  *  Q  M  R  K  I  Y  K  K  M  W  I  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  K  D  Y  L  *  *  Q  H  L  M  S  P  L  P  T  A  Q  G  K  R  N  N  G  P  S  H  L  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  G  R  F  G  D  H  H  Y  L  D  H  R  V  L  Q  N  D  G  L  F  H  N  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  T  S  *  C  V  Q  S  P  H  I  H  N  T  F  W  I  Q  A  *  F  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  R  L  S  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  </first_frame>
            <second_frame>  I  C  T  R  L  G  *  R  H  G  F  S  I  A  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  H  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  M  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  V  K  *  Y  R  S  H  T  I  T  N  Q  K  I  T  C  D  N  S  I  *  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  L  T  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  A  V  L  V  T  T  I  T  S  T  T  A  S  S  R  M  T  A  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  S  L  P  T  S  I  T  L  S  G  F  K  H  S  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  *  P  L  A  N  E  E  D  I  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  Q  T  K  R  L  P  V  I  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  M  C  P  V  S  P  H  P  *  H  F  L  D  S  S  I  V  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  Q  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159687" stop="159433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPAVLVTTITSTTASSRMTASSITTSTSNIWRSVTLFWTIPLNVSSLPTSITLSGFKHSSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 294 chains have been computed
$ 
$ memory statistics:
$ 283864 bytes spliced alignments in total
$ 59 spliced alignments have been stored
$ 4811 bytes was the average size of a spliced alignment
$ 18504 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1850 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 372 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:58:11
-->
