<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:43:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542180" ref_strand="+" ref_description="SGN-E542180 [TUS-63-F18](-)">
      <seq>tttcctgtaggatgaattatgtcatggcgtcccctcgcggatcatctttctgcagtccattccaacgaaacaaacctgtgttctttcaagtattgtgattcttcaaaataagtttaattaagattatgcgtttctaatttctngtaaaactttttccagtttcaagtgttgttactgataagattatttgtgccatcgaaagcatttccagctttcaaattttgttgcttttgcgccacccaaactcaagatgctattttaatcggactcttcactcggacctgcgtgacaaatacatagtattatactaagtattataaaattttactgatttttaaacatatatatatatactaatgcacatatacatttgctctgcatcaacacaaactaacctaatatatcatgattttcgatggtggtgttcaagatttagtatataaaattttaaaaaattaaattaaatttatttatatagcataatttttttatgatttaataaaaaacttacctgcttaattgctatagttgacacaggaaaatattagaaacaatgatacataatttatcaatttggatgataacattctgctcccttttttgatgatcatggcaaaataatgatataacaatagttaatttctagttttaaaaaattaaaattcatatgtgtaaattgtaactagaatgtatatatttatacatactgaaaaattgtactagttattaggactcttttaggataagaacttatatgtaaccactaaaatatataaatttatacatactaaagagtcctcctatgtaatatttagtttatgtatttaatatatatattttttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="9697" stop="8246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9397" g_stop="8540" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E542180" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9397" e_stop="8540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTGTAGGATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAAC-TTTTCCAGTATTCAAGTGTTGTTACTGATAAGATTATTTGTGCCATCGAAAGCATTTCCAGCTTTCAAATTTTGTTGCTTTTGCGCCACCCAAACTCAAGATGCTATTTTAATCGGACTCTTCACTCGGACCTGCGTGACAAATACATAGTATTATACTAAGTATTATAAAATTTTACTGATTTTTAAACATATATATATATACTAATGCACATATACATTTGCTCTGCATCAACACAAACTAACCTAATATATCATGATTTTCGATGGTGGTGTTCAAGATTTAGTATATAAAATTTTAAAAAATTAAATTAAATTTATTTATATAGCATAATTTTTTTATGATTTAATAAAAAACTTACCTGCTTAATTGCTATAGTTGACACAGGAAAATATTAGAAACAATGATACATAATTTATCAATTTGGATGATAACATTCTGCTCCCTTTTTTGATGATCATGGCAAAATAATGATATAACAATAGTTAATTTCTAGTTTTAAAAAATTAAAATTCATATGTGTAAATTGTAACTAGAATGTATATATTTATACATACTGAAAAATTGTACTAGTTATTAGGACTCTTTTAGGATAAGAACTTATATGTAACCACTAAAATATATAAATTTATACATACTAAAGAGTCCTCCTATGTAATATTTAGTTTATGTATTTAATATATATATATTTTTAATAGAAGTGTTA</genome_strand>
        <mrna_strand>TTTCC-TGTAGGA-TGAATTATGTCATGGCGTCCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTGTTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTNGTAAAACTTTTTCCAGT-TTCAAGTGTTGTTACTGATAAGATTATTTGTGCCATCGAAAGCATTTCCAGCTTTCAAATTTTGTTGCTTTTGCGCCACCCAAACTCAAGATGCTATTTTAATCGGACTCTTCACTCGGACCTGCGTGACAAATACATAGTATTATACTAAGTATTATAAAATTTTACTGATTTTTAAACATATATATATATACTAATGCACATATACATTTGCTCTGCATCAACACAAACTAACCTAATATATCATGATTTTCGATGGTGGTGTTCAAGATTTAGTATATAAAATTTTAAAAAATTAAATTAAATTTATTTATATAGCATAATTTTTTTATGATTTAATAAAAAACTTACCTGCTTAATTGCTATAGTTGACACAGGAAAATATTAGAAACAATGATACATAATTTATCAATTTGGATGATAACATTCTGCTCCCTTTTTTGATGATCATGGCAAAATAATGATATAACAATAGTTAATTTCTAGTTTTAAAAAATTAAAATTCATATGTGTAAATTGTAACTAGAATGTATATATTTATACATACTGAAAAATTGTACTAGTTATTAGGACTCTTTTAGGATAAGAACTTATATGTAACCACTAAAATATATAAATTTATACATACTAAAGAGTCCTCCTATGTAATATTTAGTTTATGTATTTAATATATATAT-TTTTTAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304039" ref_strand="+" ref_description="SGN-E304039 [cLEX-6-I17](-)">
      <seq>tatgttggggcagttggaatgccttaaggtactgaaattgaaagagaatgcattcacagggaagaagtggaagcccaagaaaggaagttttagcaagctccaagtcctgcacattgtctgggcaggagagtgggaaacttgggatgcatcaaatcgtccgttccaaagtcttacgcaccttgctcttatttcctgttatgatctcaaggctgtgccacacgagctggctgatttaccttatctgcaagagatgaagctgacgcgcacattccaggcagttagttctgccatagaaatcaaaaacaagatactacaaaggcaagatcccgaaagcagcatcaaattcaatctcattacatttccccctaccccgtccacaaattaaggattgaattatgtcatggcgttccctcgcggatcatctttctgcagtccattccaacgaaacaaacctgttgtctttcaagtattgtgattcttcaaaataagtttaattaagattatgcgtttctaatttcttgtaaaacttttccagtattcaagtgttgttactgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="10226" stop="8913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9926" g_stop="9541" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9540" i_stop="9387" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9386" g_stop="9208" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="565" r_length="179" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E304039" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9926" e_stop="9541"/>
          <exon e_start="9386" e_stop="9208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCAGGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCGTTCCAAAGTCTTACGCACCTTGCTCTTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTACCTTATCTGCAAGAGATGAAGCTGACGCGCACATTCCAGGCAGTTAGTTCTGCCATAGAAATCAAAAACAAGATACTACAAAGGCAAGATCCCGAAAGCAGCATCAAATTCAATCTCATTACATTTCCCCCTACCCCGTCCACAAATTAAGGTTAGTCAAATTCGTTCATTTTGTCTTGAAAAAATGATTTTATATCTTCATCATACATTTGTGTTTGTTCACAAGTTACTTTTGGGTCACGATTTCACATTTCTTAGCATAGAAACCTCTCTCCAACACTTCATCTATCATATTTTCCTTGTAGGATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAACTTTTCCAGTATTCAAGTGTTGTTACTGATAAGATTATT</genome_strand>
        <mrna_strand>TATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCAGGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCGTTCCAAAGTCTTACGCACCTTGCTCTTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTACCTTATCTGCAAGAGATGAAGCTGACGCGCACATTCCAGGCAGTTAGTTCTGCCATAGAAATCAAAAACAAGATACTACAAAGGCAAGATCCCGAAAGCAGCATCAAATTCAATCTCATTACATTTCCCCCTACCCCGTCCACAAATTAAG..........................................................................................................................................................GATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAACTTTTCCAGTATTCAAGTGTTGTTACTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212821" ref_strand="+" ref_description="SGN-E212821 [cLEC-73-A6]">
      <seq>ttccttcactcttccgtaatttttggtatttacaaacccttatacttcgtaatgatgatacaaatacttcaagctccacccttgagataaaagaggacatatggaaactgttacaattgagacatttgcactccgaccttcctgtgaaattgcctccccctcctaccacaacaagcaatagtcgtacttcttgtctacaaactctttctaaggttacaccagatagttgcaaaaaaactgtgtttgcaaaggcttgtcatctcagaaaattgggtattgaagggaaattggcacttcttcttggaaaagaacgtggattcgacagtttccaagagctaaggtgcatcgaaaaactgaaattgttgaacaatgattttagtgaagagcttcaccttcctccacactttttcagcttacaaaaaacactgaacaagttaactttgtcaagtacaaggttcaagtggagtgaggcagatatgttggggcagttggaatgccttaaggtactgaaattgaaagagaatgcattcacagggaagaagtggaagcccaagaaaggaagttttagcaagctccaagtcctgcacattgtctgggcangagagtgggaaacttgggatgcatcaaatcgtcccgttcaaagtcttacgcaccttgctnctatttcctgttatgatctcaaggctgtgccacacgagctggctgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="10701" stop="9392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10401" g_stop="9692" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E212821" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10401" e_stop="9692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTCGTAATGATGATACAAATACTTCAAGCTCCACCCTTGAGATAAAAGAGGACATATGGAAACTGTTACAATTGAGACATTTGCACTCCGACCTTCCTGTGAAATTGCCTCCCCCTCCTACCACAACAAGCAATAGTCGTACTTCTTGTCTACAAACTCTTTCTAAGGTTACACCAGATAGTTGCAAAAAAACTGTGTTTGCAAAGGCTTGTCATCTCAGAAAATTGGGTATTGAAGGGAAATTGGCACTTCTTCTTGGAAAAGAACGTGGATTCGACAGTTTCCAAGAGCTAAGGTGCATCGAAAAACTGAAATTGTTGAACAATGATTTTAGTGAAGAGCTTCACCTTCCTCCACACTTTTTCAGCTTACAAAAAACACTGAACAAGTTAACTTTGTCAAGTACAAGGTTCAAGTGGAGTGAGGCAGATATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCAGGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCGTTCCAAAGTCTTACGCACCTTGCTCTTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTA</genome_strand>
        <mrna_strand>TTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTCGTAATGATGATACAAATACTTCAAGCTCCACCCTTGAGATAAAAGAGGACATATGGAAACTGTTACAATTGAGACATTTGCACTCCGACCTTCCTGTGAAATTGCCTCCCCCTCCTACCACAACAAGCAATAGTCGTACTTCTTGTCTACAAACTCTTTCTAAGGTTACACCAGATAGTTGCAAAAAAACTGTGTTTGCAAAGGCTTGTCATCTCAGAAAATTGGGTATTGAAGGGAAATTGGCACTTCTTCTTGGAAAAGAACGTGGATTCGACAGTTTCCAAGAGCTAAGGTGCATCGAAAAACTGAAATTGTTGAACAATGATTTTAGTGAAGAGCTTCACCTTCCTCCACACTTTTTCAGCTTACAAAAAACACTGAACAAGTTAACTTTGTCAAGTACAAGGTTCAAGTGGAGTGAGGCAGATATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCANGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCCGTTCAAAGTCTTACGCACCTTGCTNCTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457435" ref_strand="+" ref_description="SGN-E457435 [cPRO-2-P9]">
      <seq>caaagatgacaataaaagctgcttgaaatttgttgaaacgagttacaatcatttgccgcaacagagaaaggcagccttcttgtattttggagtatttcctcaaggttttgatattcctgcttggaaacttattctgctatgggttgctgaggggctaataaagtccgatcttcaaggcagtgaaatcgaggaggttgcagatacttacttgagcgactttgccggtaggaatttagtgatggtgatgcaaaagagatctaacggtcaaatcaaaacatgtcgactccatgacatgttgcatgagttctgcattattgaggctgaaaggataagtctctttcaacaagtatatctccaacctggtgttcgagtttttccttctatagaagatccaaatacttctcgtcgattatgtattcaatcctctattccgtataattttatccctaaagatagaattgtacagcatgttaggtctctcttatgtttttcctcagaccaaaagcacattgacttgtctaatttagaagtccaactcatcccctactcctttccactcatcagagtgttggacattcaatccctcatatttgaattctccgagatgttttctcggctatttcacttgaggtatattgccatcaaaggcaacttcactgtccttccttcgctctttggtaatttttggtatttacaaacccttatacttcatacagacacttctcgctccacccttgagataagagagacatttggaaaatgttacaattgagacatctgcactccaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="11363" stop="9964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11063" g_stop="10264" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E457435" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11063" e_stop="10264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTAGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGTCTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGCAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCATATAATTTTATACCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCGGACCAAAAGCAAATTGACTTGTCTAATCTAGATGTCCAACTCATCCCCAGTGCCTTTCCACTAATCAGGGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCAAGATGTTTTATGGTCTATTTCACTTGAGGTATATTGCCATCAAAGGCGACTTCACTATCATTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTCGTAATGATGATACAAATACTTCAAGCTCCACCCTTGAGATAAAAGAGGACATATGGAAACTGTTACAATTGAGACATTTGCACTCCGACC</genome_strand>
        <mrna_strand>CAAAGATGACAATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAACAGAGAAAGGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAAACTTATTCTGCTATGGGTTGCTGAGGGGCTAATAAAGTCCGATCTTCAAGGCAGTGAAATCGAGGAGGTTGCAGATACTTACTTGAGCGACTTTGCCGGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGACTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGAAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCGTATAATTTTATCCCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCAGACCAAAAGCACATTGACTTGTCTAATTTAGAAGTCCAACTCATCCCCTACTCCTTTCCACTCATCAGAGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCGAGATGTTTTCTCGGCTATTTCACTTGAGGTATATTGCCATCAAAGGCAACTTCACTGTCCTTCCTTCGCTCTTTGGTAATTTTTGGTATTTACAAACCCTTATACTTC---------ATACAGACACTTCTCGCTCCACCCTTGAGATAAGAGA-GACATTTGGAAAATGTTACAATTGAGACATCTGCACTCCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429531" ref_strand="+" ref_description="SGN-E429531 [STM-52-O23]">
      <seq>caaagatgacaataaaagctgcttgaaatttgttgaaacgagttacaatcatttgccgcaacagagaaaggcagccttcttgtattttggagtatttcctcaaggttttgatattcctgcttggaaacttattctgctatgggttgctgaggggctaataaagtccgatcttcaaggcagtgaaatcgaggaggttgcagatacttacttgagcgactttgccggtaggaatttagtgatggtgatgcaaaagagatctaacggtcaaatcaaaacatgtcgactccatgacatgttgcatgagttctgcattattgaggctgaaaggataagtctctttcaacaagtatatctccaacctggtgttcgagtttttccttctatagaagatccaaatacttctcgtcgattatgtattcaatcctctattccgtataattttatccctaaagatagaattgtacagcatgttaggtctctcttatgtttttcctcagaccaaaagcacattgacttgtctaatttagaagtccaactcatcccctactcctttccactcatcagagtgttggacattcaatccctcatatttgaattctccgagatgttttctcggctatttcacttgaggtatattgccatcaaaggcaacttcactgtccttccttcgctctttggtaatttttgtatttacaaacccttatacttcatacagacacttctcgctccaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="11363" stop="10047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11063" g_stop="10354" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E429531" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11063" e_stop="10354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTAGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGTCTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGCAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCATATAATTTTATACCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCGGACCAAAAGCAAATTGACTTGTCTAATCTAGATGTCCAACTCATCCCCAGTGCCTTTCCACTAATCAGGGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCAAGATGTTTTATGGTCTATTTCACTTGAGGTATATTGCCATCAAAGGCGACTTCACTATCATTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTC</genome_strand>
        <mrna_strand>CAAAGATGACAATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAACAGAGAAAGGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAAACTTATTCTGCTATGGGTTGCTGAGGGGCTAATAAAGTCCGATCTTCAAGGCAGTGAAATCGAGGAGGTTGCAGATACTTACTTGAGCGACTTTGCCGGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGACTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGAAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCGTATAATTTTATCCCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCAGACCAAAAGCACATTGACTTGTCTAATTTAGAAGTCCAACTCATCCCCTACTCCTTTCCACTCATCAGAGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCGAGATGTTTTCTCGGCTATTTCACTTGAGGTATATTGCCATCAAAGGCAACTTCACTGTCCTTCCTTCGCTCTTTGGTAATTTTT-GTATTTACAAACCCTTATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302150" ref_strand="+" ref_description="SGN-E302150 [cLEW-19-N19]">
      <seq>aaagctttcccaaacaaaaaatcccggccccgaggggatagaattatgttgacaactcgccaacaacgtgtggctgaagctgtcagcgctcgtcctcactatctggagaacttgtcaaaagaggatagtataaagttgttggaacagagagtttttgccaataaaaggacatgtcctattgagttacaaggatatcgtgatggaattgtagataaatgttgtggtgtaccgcttgccatagtggtgatttcaggagctttgagaggttgtatggacgaaagtgaatggagagtagtcgaggaaaatgtggggaagcaccttataaacaaggacgaccataaaagctgcttgaaatttgttgaaacgagttacaatcatttgccgcaagagaaaaaagcagccttcttgtattttggagtatttcctcaaggttttgatattcctgcttggaaccttattcgcttatgggttgctgaggggctaataaagtccggtcataaagacagtgaaatcgagaaggttgcagagacttacttgagcgactttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="11689" stop="10540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11389" g_stop="10840" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E302150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11389" e_stop="10840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAATGTGGGGAAGCACCTTATAAACAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTA</genome_strand>
        <mrna_strand>AAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAATGTGGGGAAGCACCTTATAAACAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542183" ref_strand="+" ref_description="SGN-E542183 [TUS-63-F18]">
      <seq>cctgctgaggaggatgtcgaagtggttggttttaataagcctgcagaagatgtgaaagaacgactatgtgaaggatcaaaggatcttgatgttatacctattgtgggtatgccaggacttggaaagaccactctgtcaagaaaagtttacaatgattcttcccttgatttttatttttaccacaaaatatggatttatgttggaacgtcaaagaaaccgaaggatattcttgttgagattgtaaaagaagtcgcgcaaagcaatagtaaggaactaattaaagacaaggatgaggaccaattagctcatatcatacgtgattttcttgttgaaagaggtaaacatctcattgtcttggatgatgtgtgggacacacaagttgtagattttgtcaagaaagctttcccaaacaaaaaatcccggccccgaggggatagaattattttgacaactcgccaacaacgtgtggctgaagctgtcagcgctcgtcctcactatctggagaacttgtcaaaagaggatagtataaagttgttggaacagagagtttttgccaataaaaggacatgtcctattgagttacaaggatatcgtgatggaattgtagataaatgttgtggtgtaccgcttgccatagtggtgatttcaggagctttgagaggttgtatggacgaaagtgaatggagagtagtcgaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="12085" stop="10784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11785" g_stop="11084" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E542183" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11785" e_stop="11084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAAT</genome_strand>
        <mrna_strand>CCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATTTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544472" ref_strand="+" ref_description="SGN-E544472 [TUS-66-N4]">
      <seq>ctgaaattcgcaaacagactcaacaggttttggagaaaaccggtatacagagttctgctttccagcctggagaaactacccagccacagggtcctgctgaggaggatgtcgaagtggttggttttaataagcctgcagaagatgtgaaagaacgactatgtgaaggatcaaaggatcttgatgttatacctattgtgggtatgccaggacttggaaagaccactctgtcaagaaaagtttacaatgattcttcccttgatttttatttttaccacaaaatatggatttatgttggaacgtcaaagaaaccgaaggatattcttgttgagattgtaaaagaagtcgcgcaaagcaatagtaaggaactaattaaagacaaggatgaggaccaattagctcatatcatacgtgattttcttgttgaaagaggtaaacatctcattgtcttggatgatgtgtgggacacacaagttgtagattttgtcaagaaagctttcccaaacaaaaaatcccggccccgaggggatagaattatgttgacaactcgccaacaacgtgtggctgaagctgtcagcgctcgtcctcactatctggagaacttgtcaaaagaggatagtataaagttgttggaacagagagtttttgccaataaaaggacatgtcctattgagttacaaggatatcgtgatggaattgtagataaatgttgtggtgtaccgcttgccatagtggtgatttcaggagctttgagagttgtatggacgaagtgaatggagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="13950" stop="10797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13650" g_stop="13562" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13561" i_stop="11789" i_length="1773">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11788" g_stop="11097" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="779" r_length="690" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E544472" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13650" e_stop="13562"/>
          <exon e_start="11788" e_stop="11097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAGGTATCTCCTTCCTCCGTCTCTCAATTCACGTGAAAACAATTAAAAATTAAATTTGCCAAAAATATAAAATATGCGTACCACATTTGAAATTGATAAATTAAATTATGACATTTAAATCCAAAAATTAATTTTAAAAATGATATTCTAAAAAATAACTATTTCAATCTATTTACTAACTATTTTTTTTTTATATAAAAATTCTTTGAAAAAACCTACTCATCAATAAAATGATGATATATGACATTGAATTCAATTTTTTTAAAAGTTCTATTTAATGAATCTGAAAACTTAATTTCTTTTTTATTTAACCCCCATCCGAGATCCATGTCCTGCCTCTTTCATCTCCTTCATTTAATTTTATTCCTTTAACCGGCATATAAGCAGTGCATATTGTTGCCTACCAAAACTAAATATTTCAGATTGATACCATCAAATCTCTTACTCATCGTCTTTATCTTCTTTTCATTACTAATTATTTATTGAATATAATAACAAATTTTTATTCGAAAAAATTAATTCAGATTTTTCTTAACGAAATTAATGAAATTCACCAAAATATTTTAGACATAGATCTACATAAAAAAAAAAAAAAAAAAGCAAGAGAAAAACAGTACGAGTGTGAGAGAAGGAGAGAAAAAGTTAATTTAGGTGTATAAGCAAAAGAAAAAAGGGAAAAAAATATTTTAATAGCTTTACGCGCTTAAAAAGAGTGAATCACGTTTTTATCATGTCAATATTTTGTGTTCAATAGGAATGACTTTTGAATAATTGAGGTGTTCAACAGACATAACCTATAGTTGAAGTGCTTAAGTGAAATATACGAACAACTTTAGGAGACCGCATATAACTTAAGCCTATATATATTGTACATACCTTCACTTTGTATATGATTTTCTCTTTTCTTTCTCTTGCAATAGTATTATCTATGTATGAAAAGAGAAGATGATATATATATTGAAAAGTTTAATAAAATTGAATGGGGCACTGAAAAGTTTAATAAAGTTGAATAGGGCATGTACGAGATTGAATTTTAATTTTTAATCATTCCAGAGAAATGTTATTGTGAGTCACGTTTTAATTGTAAAACGTGCTTCAAAGTAACAAAATATAAAACGTTACAAACAATAACATTTTATATTTGTTTAGTCTTTTTAAATAAAATATTACCTAAAACGTTACCGAGAACTATGTTTATACTAGTTTTGTAAAATTTCAAAAAGGCATAATACATAAATATGTCCTTTAACTTGGCTTCAAATCACATTTATGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTCGTCCTACGTGTATTGTGTCATGTAGCACTCATGTGTTTATTTATTTAAAAGTTGGATAGTCAAAATGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAAATTTGAAGCCAAGTTTAGGATCCAATATATGTATTTCGCCTTTCAAAAATATGTATTATTTTGATAAATTAATTTTTATAATGGCTTATTTTGGTCAAAACTTTCAAGTTATAGTGTACTAGTCTTTAATATAATCTTGTGATATCGTAGGAGTTGATTTGATGTAATTATACTATAAGTGGTTTAAAAGTAATGATATGAATTTATCTTTATTTATATATGAACATGATAATTATTAACTACTTTTTTGCTATTTTAAACATTTTTTTGTCTCCCAAATGTATAATAATTTGATAATTGGAATGAAAAGGGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGT</genome_strand>
        <mrna_strand>CTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGA-GTTGTATGGACG-AAGTGAATGGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300035" ref_strand="+" ref_description="SGN-E300035 [cLEW-11-N2]">
      <seq>ctgctgaggaggatgtcgaagtggttggttttaataagcctgcagaagatgtgaaagaacgactatgtgaaggatcaaaggatcttgatgttatacctattgtgggtatgccaggacttggaaagaccactctgtcaagaaaagtttacaatgattcttcccttgattgttatttttaccacaaaatatggatttatgttggaacgtcaaagaaaccgaaggatattcttgttgagattgtaaaagaagtcgcgcaaagcaatagtgaggaactaattaaagacaaggatgaggaccaattagctcatatcatacgtgattttcttgttgaaagaggtaaacatctcattgtcttggatgatgtgtgggacacacaagttgtagattttgtcaagaaagctttcccaaacaaaaaatcccggccccgaggggatagaattattttgacaactcgccaacaacgtgtggctgaagctgtcagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="12084" stop="11001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11784" g_stop="11301" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E300035" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11784" e_stop="11301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGC</genome_strand>
        <mrna_strand>CTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTGTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTGAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATTTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310689" ref_strand="+" ref_description="SGN-E310689 [cLEZ-15-C11]">
      <seq>tgaaaagggtcctgctgaggaggatgtcgaagtggttggttttaataagcctgcagaagatgtgaaagaacgactatgtgaaggatcaaaggatcttgatgttatacctattgtgggtatgccaggacttggaaagaccactctgtcaagaaaagtttacaatgattcttcccttgatttttatttttaccacaaaatatggatttatgttggaacgtcaaagaaaccgaaggatattcttgttgagattgtaaaagaagtcgcgcaaagcaatagtaaggaactaattaaagacaaggatgaggaccaattagctcatatcatacgtgattttcttgttgaaagaggtaaacatctcattgtcttggatgatgtgtgggacacacaagttgtagattttgtcaagaaagctttcccaaacaaaaaatcccggccccgacgggatagaattatgttgacaactcgccaacaacgtgtggctgaagctgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="12095" stop="11004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11795" g_stop="11304" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E310689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11795" e_stop="11304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAG</genome_strand>
        <mrna_strand>TGAAAAGGGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGACGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307162" ref_strand="+" ref_description="SGN-E307162 [cLEY-15-E4]">
      <seq>ctgctgaccagcctggagaaactacccagccacagggtcctgctgaggaggatgtctaagtggttggttttaataagcctgcagaagatgtgaaagaacgactatgtgaaggatcaaaggatcttgatgttatacctattgagggtgtgccacgacttgtaaagaccactctgtcaataaaagtcttcaatgattcttcccttgatttttatttttaccacaaaatatggatttatgttggaacgtcaaagaaaccgaaggatattcttgttgagattgtaaaagaagtcgcgcaaagcaatagtaaggaactaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="13896" stop="11205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13596" g_stop="13562" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13561" i_stop="11789" i_length="1773">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11788" g_stop="11505" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="319" r_length="284" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E307162" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13596" e_stop="13562"/>
          <exon e_start="11788" e_stop="11505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAGGTATCTCCTTCCTCCGTCTCTCAATTCACGTGAAAACAATTAAAAATTAAATTTGCCAAAAATATAAAATATGCGTACCACATTTGAAATTGATAAATTAAATTATGACATTTAAATCCAAAAATTAATTTTAAAAATGATATTCTAAAAAATAACTATTTCAATCTATTTACTAACTATTTTTTTTTTATATAAAAATTCTTTGAAAAAACCTACTCATCAATAAAATGATGATATATGACATTGAATTCAATTTTTTTAAAAGTTCTATTTAATGAATCTGAAAACTTAATTTCTTTTTTATTTAACCCCCATCCGAGATCCATGTCCTGCCTCTTTCATCTCCTTCATTTAATTTTATTCCTTTAACCGGCATATAAGCAGTGCATATTGTTGCCTACCAAAACTAAATATTTCAGATTGATACCATCAAATCTCTTACTCATCGTCTTTATCTTCTTTTCATTACTAATTATTTATTGAATATAATAACAAATTTTTATTCGAAAAAATTAATTCAGATTTTTCTTAACGAAATTAATGAAATTCACCAAAATATTTTAGACATAGATCTACATAAAAAAAAAAAAAAAAAAGCAAGAGAAAAACAGTACGAGTGTGAGAGAAGGAGAGAAAAAGTTAATTTAGGTGTATAAGCAAAAGAAAAAAGGGAAAAAAATATTTTAATAGCTTTACGCGCTTAAAAAGAGTGAATCACGTTTTTATCATGTCAATATTTTGTGTTCAATAGGAATGACTTTTGAATAATTGAGGTGTTCAACAGACATAACCTATAGTTGAAGTGCTTAAGTGAAATATACGAACAACTTTAGGAGACCGCATATAACTTAAGCCTATATATATTGTACATACCTTCACTTTGTATATGATTTTCTCTTTTCTTTCTCTTGCAATAGTATTATCTATGTATGAAAAGAGAAGATGATATATATATTGAAAAGTTTAATAAAATTGAATGGGGCACTGAAAAGTTTAATAAAGTTGAATAGGGCATGTACGAGATTGAATTTTAATTTTTAATCATTCCAGAGAAATGTTATTGTGAGTCACGTTTTAATTGTAAAACGTGCTTCAAAGTAACAAAATATAAAACGTTACAAACAATAACATTTTATATTTGTTTAGTCTTTTTAAATAAAATATTACCTAAAACGTTACCGAGAACTATGTTTATACTAGTTTTGTAAAATTTCAAAAAGGCATAATACATAAATATGTCCTTTAACTTGGCTTCAAATCACATTTATGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTCGTCCTACGTGTATTGTGTCATGTAGCACTCATGTGTTTATTTATTTAAAAGTTGGATAGTCAAAATGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAAATTTGAAGCCAAGTTTAGGATCCAATATATGTATTTCGCCTTTCAAAAATATGTATTATTTTGATAAATTAATTTTTATAATGGCTTATTTTGGTCAAAACTTTCAAGTTATAGTGTACTAGTCTTTAATATAATCTTGTGATATCGTAGGAGTTGATTTGATGTAATTATACTATAAGTGGTTTAAAAGTAATGATATGAATTTATCTTTATTTATATATGAACATGATAATTATTAACTACTTTTTTGCTATTTTAAACATTTTTTTGTCTCCCAAATGTATAATAATTTGATAATTGGAATGAAAAGGGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAA</genome_strand>
        <mrna_strand>CTGCTGACCAGCCTGGAGAAACTACCCAGCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCTGCTGAGGAGGATGTCTAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGAGGGTGTGCCACGACTTGTAAAGACCACTCTGTCAATAAAAGTCTTCAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312228" ref_strand="+" ref_description="SGN-E312228 [cTOA-5-M13]">
      <seq>acacaaaatagtattttggttgacagatggaggctataatcgttgcagcggtgagtccggcggcgacaaaagcggtaagctttctggtggacagtctatcgcagctactatcggaaaatgtggaactgattagaggtgcagatagagatttccagcgattactggatgaaattgaacccataaatgagttactagcaggagattatgcccaattgaaaagcaacaacaacgatttggataaattgttccagaatattcaacgaacggtatataaagctgaagatgcgatcgataaattcctaattcaggcgaaaattgatgaagctaattttttcaataagatcggtccgttcgtcaagtggaacaacaatcggaagattgcaccggaattcggaaaaattctcgaacaagtgactgaaattcgcaaacagactcaacaggttttggagaaaaccggtatacagagttctgctttccagcctggagaaactacccagccacagggtcctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="14364" stop="13261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14064" g_stop="13562" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E312228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14064" e_stop="13562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAAATAGTATTTTGGTTGACAGATGGAGGCTATAATCGTTGCAGCGGTGAGTCCGGCGGCGACAAAAGCGGTAAGCTTTCTGGTGGACAGTCTATCGCAGCTACTATCGGAAAATGTGGAACTGATTAGAGGTGCAGATAGAGATTTCCAGCGATTACTGGATGAAATTGAACCCATAAATGAGTTACTAGCAGGAGATTATGCCCAATTGAAAAGCAACAACAACGATTTGGATAAATTGTTCCAGAATATTCAACGAACGGTATATAAAGCTGAAGATGCGATCGATAAATTCCTAATTCAGGCGAAAATTGATGAAGCTAATTTTTTCAATAAGATCGGTCCGTTCGTCAAGTGGAACAACAATCGGAAGATTGCACCGGAATTCGGAAAAATTCTCGAACAAGTGACTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAG</genome_strand>
        <mrna_strand>ACACAAAATAGTATTTTGGTTGACAGATGGAGGCTATAATCGTTGCAGCGGTGAGTCCGGCGGCGACAAAAGCGGTAAGCTTTCTGGTGGACAGTCTATCGCAGCTACTATCGGAAAATGTGGAACTGATTAGAGGTGCAGATAGAGATTTCCAGCGATTACTGGATGAAATTGAACCCATAAATGAGTTACTAGCAGGAGATTATGCCCAATTGAAAAGCAACAACAACGATTTGGATAAATTGTTCCAGAATATTCAACGAACGGTATATAAAGCTGAAGATGCGATCGATAAATTCCTAATTCAGGCGAAAATTGATGAAGCTAATTTTTTCAATAAGATCGGTCCGTTCGTCAAGTGGAACAACAATCGGAAGATTGCACCGGAATTCGGAAAAATTCTCGAACAAGTGACTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306358" ref_strand="+" ref_description="SGN-E306358 [cLEX-13-F3]">
      <seq>ttgaatcgaagtacatttattgaaaacaatatttttatctgtcaacgtggagtattttggttgacagatggaggctataatcgttgcagcggtgagtccggcggcgacaaaagcggtaagctttctggtggacagtctatcgcagctactatcggaaaatgtggaactgattagaggtgcagatagagatttccagcgattactggatgaaattgaacccataaatgagttactagcaggagattatgcccaattgaaaagcaacaacaacgatttggataaattgttccagaatattcaacgaacggtatataaagctgaagatgcgatcgataaattcctaattcaggcgaaaattgatgaagctaattttttcaataagatcggtccgttcgtcaagtggaacaacaatcggaagattgcaccggaattcggaaaaattctcgaacaagtgactgaaattcgcaaacagactcaacaggttttggagaaaaccggtatacagagttctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="14701" stop="13291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14401" g_stop="14350" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14349" i_stop="14054" i_length="296">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.676" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14053" g_stop="13591" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="515" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E306358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14401" e_stop="14350"/>
          <exon e_start="14053" e_stop="13591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATCGAAGTAGATTTATTGAAAACAATATTTTTATCTGTCAACGTGGAGGTAAGATTTACATAGATATGATTTTATTTAAAACTAAAAATTATTATTATTCTCCTAATAATTCGAAACTGTAGTGGTCATTTGTTCATAATTCAATGTAAAAAAATTTTTAAAAAAATATTGTATTTGGTCGTGAATACACATTAAGTTTGTTTTTTTACTATTTAAGAGTAGTTTGGTGTGAAAATACCTTTTTCATTATTTTTTCAAATTTGTGAATTCGACTCATTTTTGTGATTAAATACTCTCGTTTTACTTGTACTAATCAATGGATAGAGTGTTTACACACAAAATAGTATTTTGGTTGACAGATGGAGGCTATAATCGTTGCAGCGGTGAGTCCGGCGGCGACAAAAGCGGTAAGCTTTCTGGTGGACAGTCTATCGCAGCTACTATCGGAAAATGTGGAACTGATTAGAGGTGCAGATAGAGATTTCCAGCGATTACTGGATGAAATTGAACCCATAAATGAGTTACTAGCAGGAGATTATGCCCAATTGAAAAGCAACAACAACGATTTGGATAAATTGTTCCAGAATATTCAACGAACGGTATATAAAGCTGAAGATGCGATCGATAAATTCCTAATTCAGGCGAAAATTGATGAAGCTAATTTTTTCAATAAGATCGGTCCGTTCGTCAAGTGGAACAACAATCGGAAGATTGCACCGGAATTCGGAAAAATTCTCGAACAAGTGACTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTT</genome_strand>
        <mrna_strand>TTGAATCGAAGTACATTTATTGAAAACAATATTTTTATCTGTCAACGTGGAG........................................................................................................................................................................................................................................................................................................TATTTTGGTTGACAGATGGAGGCTATAATCGTTGCAGCGGTGAGTCCGGCGGCGACAAAAGCGGTAAGCTTTCTGGTGGACAGTCTATCGCAGCTACTATCGGAAAATGTGGAACTGATTAGAGGTGCAGATAGAGATTTCCAGCGATTACTGGATGAAATTGAACCCATAAATGAGTTACTAGCAGGAGATTATGCCCAATTGAAAAGCAACAACAACGATTTGGATAAATTGTTCCAGAATATTCAACGAACGGTATATAAAGCTGAAGATGCGATCGATAAATTCCTAATTCAGGCGAAAATTGATGAAGCTAATTTTTTCAATAAGATCGGTCCGTTCGTCAAGTGGAACAACAATCGGAAGATTGCACCGGAATTCGGAAAAATTCTCGAACAAGTGACTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304914" ref_strand="+" ref_description="SGN-E304914 [cLEX-10-O4]">
      <seq>tccattatcagcaagttgcccgaacttgaggtactcaaactgaagagtaaatccttaattggcaacgagtggaaagcaacagaccaggttgggttccccaagttgaggttcttgctccttgataatctcccccttacagaatgggaaaacaccacgggctctcatgatcatttccccagccttgagcgcttaataatcacaaattttaaattcttagaagagattcctcaaggatttgctgatagcaagaaactggagctgattgagttacactattgtaacccttccttggtggattttgctaagaatgtgcaggttgaacacgaggaggttttggggaggaacaaacttaaagttactgccttcaatacaggtctaaaatggcagagaggaatctttgcttcaagaaataacaggattcccgggctagtaccaagcagcagctgatctatcacataaggagttctcttccctccttgtactgcatttggtattatttggtttgatttttttttacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="26011" stop="24685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25711" g_stop="25339" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25338" i_stop="25134" i_length="205">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25133" g_stop="24985" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="522" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E304914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25711" e_stop="25339"/>
          <exon e_start="25133" e_stop="24985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTATCAGCAAGTTGCCCGAACTTGAGGTACTCAAACTGAAGAGTAAATCCTTAATTGGCAACGAGTGGAAAGCAACAGACCAGGTTGGGTTCCCCAAGTTGAGGTTCTTGCTCCTTGATAATCTCCCCCTTACAGAATGGGAAAACACCACGGGCTCTCATGATCATTTCCCCAGCCTTGAGCGCTTAATAATCACAAATTTTAAATTCTTAGAAGAGATTCCTCAAGGATTTGCTGATAGCAAGAAACTGGAGCTGATTGAGTTACACTATTGTAACCCTTCCTTGGTGGATTTTGCTAAGAATGTGCAGGTTGAACACGAGGAGGTTTTGGGGAGGAACAAACTTAAAGTTACTGCCTTCAATACAGGTAAATATATCTATCTGTCAGAATTCAGTAGTTAGGTTTTATACTTGTATGATGTTATATATATAGCCTGAATGCTCTATACTGTTTTCCTATGACTTGTCATTTTTTGCCTTTTCATTACTATGGCTTGTTCAGATACAACTTCTCTACTTCCACAAGGTCTACATATACTCTCTACTGAGTTTCGTCATTTCACTTTTACAAGGTCTAAAATGGCAGAGAGGAATCTTTGCTTCAAGAAATAACAGGATTCCCGGGCTAGTACCAAGCAGCAGCTGATCTATCACATAAGGAGTTCTCTTCCCTCCTTGTACTGCATTTGGTATTATTTGTTTTGATTTTTTTTTACAAAAC</genome_strand>
        <mrna_strand>TCCATTATCAGCAAGTTGCCCGAACTTGAGGTACTCAAACTGAAGAGTAAATCCTTAATTGGCAACGAGTGGAAAGCAACAGACCAGGTTGGGTTCCCCAAGTTGAGGTTCTTGCTCCTTGATAATCTCCCCCTTACAGAATGGGAAAACACCACGGGCTCTCATGATCATTTCCCCAGCCTTGAGCGCTTAATAATCACAAATTTTAAATTCTTAGAAGAGATTCCTCAAGGATTTGCTGATAGCAAGAAACTGGAGCTGATTGAGTTACACTATTGTAACCCTTCCTTGGTGGATTTTGCTAAGAATGTGCAGGTTGAACACGAGGAGGTTTTGGGGAGGAACAAACTTAAAGTTACTGCCTTCAATACAG.............................................................................................................................................................................................................GTCTAAAATGGCAGAGAGGAATCTTTGCTTCAAGAAATAACAGGATTCCCGGGCTAGTACCAAGCAGCAGCTGATCTATCACATAAGGAGTTCTCTTCCCTCCTTGTACTGCATTTGGTATTATTTGGTTTGATTTTTTTTTACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309673" ref_strand="+" ref_description="SGN-E309673 [cLEY-26-C11]">
      <seq>ttaaatatttgcaacatctcgagtcagtaagtattgaaaatatcgattttatatttcagaagaatacaaccagtttttttagtcttacaagtccagattcttttccacaaaaactcaaggagttgaaacttagatgtacatatctaccgtgggaatgcatatccattatcagcaagttgcccgaacttgaggtactcaaactgaagagtaaatccttaattggcaacgagtggaaagcaacagaccaggttgggttccccaagttgaggttcttgctccttgataatctcccccttacagaatgggaaaacaccacgggctctcatgatcatttccccagccttgagcgcttaataatcacaaattttaaattcttagaagagattcctcaaggatttgctgatagcaagaaactggagctgattgagttacactattgtaacccttccttggtggattttgctaagaatgtgcaggttgaacacgaggaggttttggggaggaacaaacttaaagttactgccttcaatacaggtctaaaatggcagagaggaatctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="26172" stop="24806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25872" g_stop="25339" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25338" i_stop="25134" i_length="205">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25133" g_stop="25106" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="562" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E309673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25872" e_stop="25339"/>
          <exon e_start="25133" e_stop="25106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATTTGCAACATCTCGAGTCAGTAAGTATTGAAAATATCGATTTTATATTTCAGAAGAATACAACCAGTTTTTTTAGTCTTACAAGTCCAGATTCTTTTCCACAAAAACTCAAGGAGTTGAAACTTAGATGTACATATCTACCGTGGGAATGCATATCCATTATCAGCAAGTTGCCCGAACTTGAGGTACTCAAACTGAAGAGTAAATCCTTAATTGGCAACGAGTGGAAAGCAACAGACCAGGTTGGGTTCCCCAAGTTGAGGTTCTTGCTCCTTGATAATCTCCCCCTTACAGAATGGGAAAACACCACGGGCTCTCATGATCATTTCCCCAGCCTTGAGCGCTTAATAATCACAAATTTTAAATTCTTAGAAGAGATTCCTCAAGGATTTGCTGATAGCAAGAAACTGGAGCTGATTGAGTTACACTATTGTAACCCTTCCTTGGTGGATTTTGCTAAGAATGTGCAGGTTGAACACGAGGAGGTTTTGGGGAGGAACAAACTTAAAGTTACTGCCTTCAATACAGGTAAATATATCTATCTGTCAGAATTCAGTAGTTAGGTTTTATACTTGTATGATGTTATATATATAGCCTGAATGCTCTATACTGTTTTCCTATGACTTGTCATTTTTTGCCTTTTCATTACTATGGCTTGTTCAGATACAACTTCTCTACTTCCACAAGGTCTACATATACTCTCTACTGAGTTTCGTCATTTCACTTTTACAAGGTCTAAAATGGCAGAGAGGAATCTTTGC</genome_strand>
        <mrna_strand>TTAAATATTTGCAACATCTCGAGTCAGTAAGTATTGAAAATATCGATTTTATATTTCAGAAGAATACAACCAGTTTTTTTAGTCTTACAAGTCCAGATTCTTTTCCACAAAAACTCAAGGAGTTGAAACTTAGATGTACATATCTACCGTGGGAATGCATATCCATTATCAGCAAGTTGCCCGAACTTGAGGTACTCAAACTGAAGAGTAAATCCTTAATTGGCAACGAGTGGAAAGCAACAGACCAGGTTGGGTTCCCCAAGTTGAGGTTCTTGCTCCTTGATAATCTCCCCCTTACAGAATGGGAAAACACCACGGGCTCTCATGATCATTTCCCCAGCCTTGAGCGCTTAATAATCACAAATTTTAAATTCTTAGAAGAGATTCCTCAAGGATTTGCTGATAGCAAGAAACTGGAGCTGATTGAGTTACACTATTGTAACCCTTCCTTGGTGGATTTTGCTAAGAATGTGCAGGTTGAACACGAGGAGGTTTTGGGGAGGAACAAACTTAAAGTTACTGCCTTCAATACAG.............................................................................................................................................................................................................GTCTAAAATGGCAGAGAGGAATCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299742" ref_strand="+" ref_description="SGN-E299742 [cLEW-1-H20]">
      <seq>aatcttttgaatctgcacgctctcatttgaggtaaatcttttgttatgaatgctcgtaagcgtaaagtcttcacttttccagaagatatttggcaaatgacacaattaaggcatctttatgcaaaaggcattcatctatgttcgcctggagataataaggatctgggaaacttgcagagtgtttctggtttgaggccttgctgttgtacaaaggaaatatttgaagggattaagaaagtgaaaaaattggtcattcgtggaacgagggaggaatttcctacagatgttaaatggatagataatcttaaatatttgcaacatctcgagtcagtaagtattgaaaatatcgattttatatttcagaagaatacaaccagtttttttagtcttacaagtccagattcttttccacaaaaactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="26476" stop="25455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26176" g_stop="25755" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E299742" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26176" e_stop="25755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTGGAATCTGCACGCTCTCATTTTAGGTAAATCTTTTGTTATGAATCCTCGTAAGCGTAAAGTCTTCACTTTTCCAGAAGATATTTGGCAAATGACACAATTAAGGCATCTTTATGCAAAAGGCATTCATCTATGTTCGCCTGGAGATAATAAGGTTCTCGGAAACTTGCAGAGTGTTTCTGGTTTGAGTCCTTGCTGTTGTACAAAGGAAATATTTGAAGGGATTAAGAAAGTGAAAAAATTGGTCATTCGTGGAACGAGGGAGGAATTTCCTACAGATGTTAAATGGATAGATAATCTTAAATATTTGCAACATCTCGAGTCAGTAAGTATTGAAAATATCGATTTTATATTTCAGAAGAATACAACCAGTTTTTTTAGTCTTACAAGTCCAGATTCTTTTCCACAAAAACTCAA</genome_strand>
        <mrna_strand>AATCTTTTGAATCTGCACGCTCTCATTTGAGGTAAATCTTTTGTTATGAATGCTCGTAAGCGTAAAGTCTTCACTTTTCCAGAAGATATTTGGCAAATGACACAATTAAGGCATCTTTATGCAAAAGGCATTCATCTATGTTCGCCTGGAGATAATAAGGATCTGGGAAACTTGCAGAGTGTTTCTGGTTTGAGGCCTTGCTGTTGTACAAAGGAAATATTTGAAGGGATTAAGAAAGTGAAAAAATTGGTCATTCGTGGAACGAGGGAGGAATTTCCTACAGATGTTAAATGGATAGATAATCTTAAATATTTGCAACATCTCGAGTCAGTAAGTATTGAAAATATCGATTTTATATTTCAGAAGAATACAACCAGTTTTTTTAGTCTTACAAGTCCAGATTCTTTTCCACAAAAACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700868" ref_strand="+" ref_description="SGN-E700868 [FA14BE11]">
      <seq>ggtcgctaaggatactaaaaagcgcatgtgggaatacgtcaattcccaatttctacttccagtagaaggaaagaagtgggtgatgactggtcttcgtgatgcttggaggcgacacaagcaaaaaattaaaaagaatttttttgataaacacagtacccttgaggatatgctagcaaaatatcctgatggcattccacatcatcaattccgccagttgatcgagtattggaaacacccaactgttcaagctatatgcgagatgaattctcaaaacaggaaaaaacaaaagtggaggcatcgaatgggacctattaattttgctagagtacgcgtggcattgcgtgcagccaaagacaacaacgaagaaccatcaaagcctgaaatatttattgcaactcgtaccaagacgggaaaggaaatccaggctgatacccaagttgcaatagctgaacttcaaagtcgccaaaattctggggaaacagctgatgatgcatttagggcagtgtttggaaaggagcagcctggtcgagttaggtgctatggtagatcagtgacaacaagttctttgaagaaagatgaggaaattaacaatctaaaacaaaagcatgtcgatgtaatcacttctctaaaagaagaattgagagaagaaatgtgacatttattcactcaattgctgcaaaacaaccctggattgaattttcaagatatacccgggtgtgttggatctaaccttgcttcacctattgatgcaagtagtgcacaagctgtaaaaggcacaaatcttccatattcttcggggtcagctcaagattccgttcatcaaaaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="48985" stop="47043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48685" g_stop="48643" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48642" i_stop="48571" i_length="72">
            <donor d_prob="0.989" d_score="0.93"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48570" g_stop="48367" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="247" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48366" i_stop="48266" i_length="101">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48173" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="340" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48172" i_stop="48072" i_length="101">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48071" g_stop="47967" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="445" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47966" i_stop="47727" i_length="240">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47726" g_stop="47346" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="826" r_length="381" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E700868" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48685" e_stop="48643"/>
          <exon e_start="48570" e_stop="48367"/>
          <exon e_start="48265" e_stop="48173"/>
          <exon e_start="48071" e_stop="47967"/>
          <exon e_start="47726" e_stop="47346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCAAAGGATACTAAAAAGCGCATGTGGGAATACGTCAATGTAAGAACTACCACTCATGAGAATTCATATTTTTTTTACTTACTGAAACTAAATATATTTTATTTTGCATAGTCCAAATTTCTACTTCCAGTAGAAGGAAAGAAGTGGGTGATGACTGGTCTTCGTGATGCTTGGAGGCGACACAAGCAAAAAATTAAAAAGAATTTTTTTGATAAAGACAGTACCCTTGAGGATATGCTAGCAAAATGTCCTGATGGCATTCCACATCATCAATTCCGCCAGTTGATCGAGTATTGGAAACACCCAACTGTTCAAGTAAGGTTAAAATGGTGCATTTCCACTCATCGACTAATTCTGTGTCATATCTTTTCTTTTTATAGATATCAATTCAATTATCTCTTTGTTTTTAACAATAGGCTATATGCGAGATGAATTCTCAAAACAGGAAAAAACAAAAGTGGAGGCATCGAATGGGACCTATTAATTTTGCTAGAGTACGCGTGGCATTGGTAATACTTAGCTGACATTTCATACAAAATTTGATTTTCATTTTTTTGTACTTTATAAGAACTTACTGATTTTTTAAAATTTCTTTTGATATAATCTATAGCGTGCAGCCAAAGACAACAACGAAGAACCATCAAAGCCTGAAATATTTATTGCAACTCGTACCAAGACGGGAAAGGAAATCCAGGCTGATACCCAAGTTGCAATAGTAAGTTTTTCAAAGAGGATTATTAGTGAACTTTATTCAGACTTAACATTTATATCGTGGGGAGTTTGACTACATTAAATTTTAATCATGTATGCCTTCTTCTTCTTCTTCTTGTGCAAGTTCAAGGAGATATCAATTATTTGTCGACATTGTTTAATTATTTTTTACGAAAAGTTTTCATAATGTTTTAATGGTTGATACTACTTACAATTCACTATGGATGCCAATTTTATTCAATAGGCTGAACTTCAAAGTCGCCAAAATTCTGGGGAAACAGCTGATGATGCATTTAGGGCAGTGTTTGGAAAGGAGCAGCCTGGTCGAGTTAGGTGCTATGGTAGATCAGTGACAACAAGTTCTTTGAAGAAAGATGAGGAAATTAACAATCTAAAACAAAAGCATGCCGATGAAATCACTTCTCTAAAGGAAGAATTGAGAGAAGAAATGCGACATTTATTCACTCAATTGCTGCAAAAGAACCCTGGATTGAATTTTCAAGATATACCCGGGTGTGTTGGATCTAACCTTGCTTCACCTATTGATGCAAGTAGTGCACAAGCTGTAAAAGGCACAAATCTTCCATATTCTTCGGGGTCAGCTCAAGATTCGGTTCATCAAAAG</genome_strand>
        <mrna_strand>GGTCGCTAAGGATACTAAAAAGCGCATGTGGGAATACGTCAAT........................................................................TCCCAATTTCTACTTCCAGTAGAAGGAAAGAAGTGGGTGATGACTGGTCTTCGTGATGCTTGGAGGCGACACAAGCAAAAAATTAAAAAGAATTTTTTTGATAAACACAGTACCCTTGAGGATATGCTAGCAAAATATCCTGATGGCATTCCACATCATCAATTCCGCCAGTTGATCGAGTATTGGAAACACCCAACTGTTCAA.....................................................................................................GCTATATGCGAGATGAATTCTCAAAACAGGAAAAAACAAAAGTGGAGGCATCGAATGGGACCTATTAATTTTGCTAGAGTACGCGTGGCATTG.....................................................................................................CGTGCAGCCAAAGACAACAACGAAGAACCATCAAAGCCTGAAATATTTATTGCAACTCGTACCAAGACGGGAAAGGAAATCCAGGCTGATACCCAAGTTGCAATA................................................................................................................................................................................................................................................GCTGAACTTCAAAGTCGCCAAAATTCTGGGGAAACAGCTGATGATGCATTTAGGGCAGTGTTTGGAAAGGAGCAGCCTGGTCGAGTTAGGTGCTATGGTAGATCAGTGACAACAAGTTCTTTGAAGAAAGATGAGGAAATTAACAATCTAAAACAAAAGCATGTCGATGTAATCACTTCTCTAAAAGAAGAATTGAGAGAAGAAATGTGACATTTATTCACTCAATTGCTGCAAAACAACCCTGGATTGAATTTTCAAGATATACCCGGGTGTGTTGGATCTAACCTTGCTTCACCTATTGATGCAAGTAGTGCACAAGCTGTAAAAGGCACAAATCTTCCATATTCTTCGGGGTCAGCTCAAGATTCCGTTCATCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457435" ref_strand="-" ref_description="SGN-E457435 [cPRO-2-P9]">
      <seq>ggttggagtgcagatgtctcaattgtaacattttccaaatgtctctcttatctcaagggtggagcgagaagtgtctgtatgaagtataagggtttgtaaataccaaaaattaccaaagagcgaaggaaggacagtgaagttgcctttgatggcaatatacctcaagtgaaatagccgagaaaacatctcggagaattcaaatatgagggattgaatgtccaacactctgatgagtggaaaggagtaggggatgagttggacttctaaattagacaagtcaatgtgcttttggtctgaggaaaaacataagagagacctaacatgctgtacaattctatctttagggataaaattatacggaatagaggattgaatacataatcgacgagaagtatttggatcttctatagaaggaaaaactcgaacaccaggttggagatatacttgttgaaagagacttatcctttcagcctcaataatgcagaactcatgcaacatgtcatggagtcgacatgttttgatttgaccgttagatctcttttgcatcaccatcactaaattcctaccggcaaagtcgctcaagtaagtatctgcaacctcctcgatttcactgccttgaagatcggactttattagcccctcagcaacccatagcagaataagtttccaagcaggaatatcaaaaccttgaggaaatactccaaaatacaagaaggctgcctttctctgttgcggcaaatgattgtaactcgtttcaacaaatttcaagcagcttttattgtcatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="77129" stop="73129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76912" g_stop="76644" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76643" i_stop="76304" i_length="340">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76303" g_stop="76288" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="274" r_length="15" r_score="0.562"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="75382" i_length="906">
            <donor d_prob="0.376" d_score="0.00"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75381" g_stop="75361" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="292" r_length="18" r_score="0.714"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75360" i_stop="75128" i_length="233">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75127" g_stop="75105" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="314" r_length="22" r_score="0.609"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75104" i_stop="74966" i_length="139">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74965" g_stop="74959" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="321" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74958" i_stop="74871" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74870" g_stop="74859" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="332" r_length="11" r_score="0.667"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74858" i_stop="74240" i_length="619">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74239" g_stop="74207" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="366" r_length="34" r_score="0.576"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74206" i_stop="73856" i_length="351">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.333" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73855" g_stop="73429" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="790" r_length="424" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E457435" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457435" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76912" e_stop="76644"/>
          <exon e_start="76303" e_stop="76288"/>
          <exon e_start="75381" e_stop="75361"/>
          <exon e_start="75127" e_stop="75105"/>
          <exon e_start="74965" e_stop="74959"/>
          <exon e_start="74870" e_stop="74859"/>
          <exon e_start="74239" e_stop="74207"/>
          <exon e_start="73855" e_stop="73429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAGAGTGCAGTTGTCTCAATTGTAACGGTTTCCATATGTCCTCTTTAATCTCAAGGATGGAGCTTGAAGTATGTGTATCATCATTACGAAGTATAAGAGTTTGTAAATATAAAAAATTACGAAAGAGTGAAGGAAGCACAGTGAAGTTGCCTCTGATGGCAATATACCTCAAGTGAAATAGCCGATAAAACATCTTGAAGAATTCAAATATGAGGGATTGAATGTCCAACACCCTGATGAGTGGAAAGGCGTTGGGGATGAGTTGGTATTGAATTTGAGCAGAACTTATGGAGAATGTCAATTCTCCATTGATGAATGTTAAGCTAAGCTTTGAGAGAGAACAGAAAAGAAGAAAAGCTCTGCAATTTGGGAATGAGTACTTAACTTCATTCAATGATCGATGTACTGTATTTATACAAAACAATAACAAGAAGATTCTAAAAGCTAACTTATCAACCTGTACAATATTCAAGGAATAACCAACCTAACTAACAAAAGCATGGAAGAAAGGTTAACTAACTTATAACTAACTGACTCTGCTCAGCTAACATTAATTGTAAAACTAATTACATTTTTGAATAAAACATAAACTATATATCTCAACAGCCCCCTCAAGTTGGAGGTGAGTAGCTCACAAGCCGAATGTTTGAGTGTTTGGCACTCGGCAAAGCTTTCGTCACATAATCTGCTAACTGATCATTAGTCAAAATGTGATGGAGTGTAATGAGACCTTCTTGCAGTTTAGCTCTAACAAAATGACAATCCACCTTTATGTGTTTTGTCCTTTCATGAAAAACAGGCTTCTTTGCTATGTGAACAGGTGCTTGGCTGTCACAAAACACGAATATTGGCAAGTTACATGGCAAATCCAATTCAATCAGCAGCCTCTTTAACCATACTAACTCACCCACCACTTTTATAACAACTCTGTGCTCTGCTTCTGCTGAAGATAAATGTTTGTATCTTAGATTTCCAAATAATATTGTCCCCCCCATCAACACAACAAAGCCACTTACTAATTTTCTCGTATCAGGGCAGGCAACCCAATCTGAGTTACAATAAGCAGTAATTGAGCAATCTGCATTATTGGACAAGTGTATACCCATGAAAGGATCCCTCTTGAGGTATCTGAGAACATGGTAAGCAGCCTCTCTATTGTGCCATCAACTTTATGTTTAACATTGTAAACCCACCTGCATCCAATGGCCTTCTTCCCTATGGATATCTTAACAAGGTCCCAAGTGTCATTGGCATGAAGAGCTTCAAATTCTGATGTCATTGCTGCCTGTACTGCTTCCTCATAAGAATGTGGTTCATTGTCATGTAAAAGACCTTTAACTGCTTGTTGGCTATTCTGTCCAAGACTTGTGAAGGGCAGATAATTTTCAGATAAAACAAGGTGAGAATAAGGTGCTGAAGGTGATGAGGATTGGTGCGGTAATGAGGGAAGGTAGTGGCTATATTCTTTCAGGTAGATTGATGTAGTGTGAAGTCTACCACGCCTTCTTAAGTTTGATATTTGGTTCAGATGTTAAGTAGTGGTGTTTGGCAAGGGATGATCAATAGAGGTTTGGTCATTTAGTGGTGCTGGATTAATGTTCAGTGAATGATCAAAACTTGGAGGTTGTGGTGTTTGTGAAGGTACAGGTAAACTAGCATTAGTGACAACAAAAGTGGTGTCATCACCCAACACAGAGGTTCTGCTAAAGACACCCTAAGTGGAATTTAACATGCTTGGATAAGTATTTAAATGTTTCAATGTTGTTGTAAAACTATGATCAGATTCAGAAAAAACAAGAGGAAAAATGTTTTCATGGGAAGTCACATCTCTGGAAACATGTATCTTCTTGGTGCTTAGGTCCAGAACCTTATAACCCTTTGTATTGACAGGATATCCAACAAATATGTGAGGTTTGGTTCTTGGGAAATTTAGTTTTGTGGCAGACCTAAGGTGGGAGTAAGTAGGATTTTGGTAGTAAAGCATCTCAAAACGTGTTTTGTTATGAATTACTGAATTAGGAAGTCTGGTTACTAAGTAGGTGGCTGTCAAAGTATATGTAGTGGGGAGTTTGGACTGATACAATAACCTCCAAAAGGTGCTTGTGTTTCCTTTCCACAACACCATTTTGTTGTGGTGTATAAGGACAAGTCTTTTGATGTATTATCCCCTTGGTTAGGAAGTACATATTGGTTTCATTGTTAGTGAATTCTGTACCATTATCAGTTCTTATTGACTCTAACTAAACTGATTTTCAATCAGTGATATGAAGGATTTTACAGCCTGAAGGGTGTTGCTTTTGCAACTGAGGAGGTGAGTCCATGTTGATCTACTGAAACCATCAACTATGGTCAAAAAGCATTTGTCATTATTATGCCATTTATCTAATTTGGTTAAAGCAAGTTAATGAGCTCTCTCGATTAATTCCAGAATGCTTAGGAAATCTAAGCATGCTACAAGTGCACATACATGTGTATCGTGAATTAGTGTCTAAGGCACTAAGCTCTTCCCATAGTTTCCTAATTCTGGTATAGAAACCAGTGACATCTAAGTTCTCCTGATTGAGTTCATTGATTTCACACTGCAGTTGAAACAATTTAGCTCCATTAGTTTGATCGTACCTATCCTCCAGTTCATCCCCAAATTTCTTTCGCATTGTCTACGTACTGCAGGTTTGTCTCT-GAGATCATTGGATAGGGAATTGAATAGCCAGAGGTCACCATGTCATCGCACCTTTCCCACTGAGGGAAGGTATCTGAATCTAGCCATTGATGAAACCTGTATTATATTTTATAGATAATCCACGAAGGATGAGCGATATCCAGATCCATCGAACAGAACCTGAACACTCGTGGATCCGGCATTTTCAGATGGATGAACATAAAACACACTAGTCAGATCTGCAGAAACGTGAGTTGGAGCTTGATTCCCAGTCGAAGTTCCTTCCTGAGAGTTATTTTGTTCCATAATGTGCAAACAAATCTGCTTGTGAGTGAAGAAGAAAGAGAAAACCAGAAATTGGAGATACCTAAGATGCTGTACAATTCTATGTTTAGGGATACAATTATACGGAATAGACGAGAAGTATTTGGATCTTTTATAGAAGGAAAAACTCAAACACCATGTTGGAGATATACTTGTTGAAAGAGACTTATCCTTTGAGCTTCATTAATGCAGAACTCATGCAACATGTCATGGAGACGATATGTTTTGATTTGACCGTTAGATCTCTTTTGCATCACCATCACTAAATTCCTCCCGGTGAAGTCGCTCAAGTAAGTCTTTGCAACCTCCTCGATTTCACTGCCTTGAAGATCGGACTTTATTAGCCCCTCAGCAACTCATAAGCGAATACGTTTCCAAGCAGGAATATCAAAGCCTTGAGGAAATACTGCAAAATACAACTAGGCTGCCTTTCTCTGTTGCGCCAAATGATTGTAACTCGTTTTAACAAATTTCAAGCAACTTTTACTGTCATCTTTG</genome_strand>
        <mrna_strand>GGTTGGAGTGCAGATGTCTCAATTGTAACATTTTCCAAATGT-CTCTCTTATCTCAAGGGTGGAGC--G-AG-AAGTGTCT-GT-A-T--GAAGTATAAGGGTTTGTAAATACCAAAAATTACCAAAGAGCGAAGGAAGGACAGTGAAGTTGCCTTTGATGGCAATATACCTCAAGTGAAATAGCCGAGAAAACATCTCGGAGAATTCAAATATGAGGGATTGAATGTCCAACACTCTGATGAGTGGAAAGGAGTAGGGGATGAGTTGG....................................................................................................................................................................................................................................................................................................................................................ACTTCT-AAATTAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAA-T-GTGCT-TTTGG.........................................................................................................................................................................................................................................TCTGAGGAAAAAC-ATAAGAGAG...........................................................................................................................................ACCTAAC........................................................................................AT-GCTGTACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATCTTTAGGGATAAAATTATACGGAATAGA...............................................................................................................................................................................................................................................................................................................................................................GGAT-TGA--ATACATAATCGACGAGAAGTATTTGGATCTTCTATAGAAGGAAAAACTCGAACACCAGGTTGGAGATATACTTGTTGAAAGAGACTTATCCTTTCAGCCTCAATAATGCAGAACTCATGCAACATGTCATGGAGTCGACATGTTTTGATTTGACCGTTAGATCTCTTTTGCATCACCATCACTAAATTCCTACCGGCAAAGTCGCTCAAGTAAGTATCTGCAACCTCCTCGATTTCACTGCCTTGAAGATCGGACTTTATTAGCCCCTCAGCAACCCATAGCAGAATAAGTTTCCAAGCAGGAATATCAAAACCTTGAGGAAATACTCCAAAATACAAGAAGGCTGCCTTTCTCTGTTGCGGCAAATGATTGTAACTCGTTTCAACAAATTTCAAGCAGCTTTTATTGTCATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429531" ref_strand="-" ref_description="SGN-E429531 [STM-52-O23]">
      <seq>agggtggagcgagaagtgtctgtatgaagtataagggtttgtaaatacaaaaattaccaaagagcgaaggaaggacagtgaagttgcctttgatggcaatatacctcaagtgaaatagccgagaaaacatctcggagaattcaaatatgagggattgaatgtccaacactctgatgagtggaaaggagtaggggatgagttggacttctaaattagacaagtcaatgtgcttttggtctgaggaaaaacataagagagacctaacatgctgtacaattctatctttagggataaaattatacggaatagaggattgaatacataatcgacgagaagtatttggatcttctatagaaggaaaaactcgaacaccaggttggagatatacttgttgaaagagacttatcctttcagcctcaataatgcagaactcatgcaacatgtcatggagtcgacatgttttgatttgaccgttagatctcttttgcatcaccatcactaaattcctaccggcaaagtcgctcaagtaagtatctgcaacctcctcgatttcactgccttgaagatcggactttattagcccctcagcaacccatagcagaataagtttccaagcaggaatatcaaaaccttgaggaaatactccaaaatacaagaaggctgcctttctctgttgcggcaaatgattgtaactcgtttcaacaaatttcaagcagcttttattgtcatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="77129" stop="73129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76822" g_stop="76644" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="203" r_length="178" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76643" i_stop="76304" i_length="340">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76303" g_stop="76288" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="218" r_length="15" r_score="0.562"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="75382" i_length="906">
            <donor d_prob="0.376" d_score="0.00"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75381" g_stop="75361" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="236" r_length="18" r_score="0.714"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75360" i_stop="75128" i_length="233">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75127" g_stop="75105" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="258" r_length="22" r_score="0.609"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75104" i_stop="74966" i_length="139">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74965" g_stop="74959" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="265" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74958" i_stop="74871" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74870" g_stop="74859" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="276" r_length="11" r_score="0.667"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74858" i_stop="74240" i_length="619">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74239" g_stop="74207" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="310" r_length="34" r_score="0.576"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74206" i_stop="73856" i_length="351">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.333" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73855" g_stop="73429" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="734" r_length="424" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E429531" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429531" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76822" e_stop="76644"/>
          <exon e_start="76303" e_stop="76288"/>
          <exon e_start="75381" e_stop="75361"/>
          <exon e_start="75127" e_stop="75105"/>
          <exon e_start="74965" e_stop="74959"/>
          <exon e_start="74870" e_stop="74859"/>
          <exon e_start="74239" e_stop="74207"/>
          <exon e_start="73855" e_stop="73429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTATAAGAGTTTGTAAATATAAAAAATTACGAAAGAGTGAAGGAAGCACAGTGAAGTTGCCTCTGATGGCAATATACCTCAAGTGAAATAGCCGATAAAACATCTTGAAGAATTCAAATATGAGGGATTGAATGTCCAACACCCTGATGAGTGGAAAGGCGTTGGGGATGAGTTGGTATTGAATTTGAGCAGAACTTATGGAGAATGTCAATTCTCCATTGATGAATGTTAAGCTAAGCTTTGAGAGAGAACAGAAAAGAAGAAAAGCTCTGCAATTTGGGAATGAGTACTTAACTTCATTCAATGATCGATGTACTGTATTTATACAAAACAATAACAAGAAGATTCTAAAAGCTAACTTATCAACCTGTACAATATTCAAGGAATAACCAACCTAACTAACAAAAGCATGGAAGAAAGGTTAACTAACTTATAACTAACTGACTCTGCTCAGCTAACATTAATTGTAAAACTAATTACATTTTTGAATAAAACATAAACTATATATCTCAACAGCCCCCTCAAGTTGGAGGTGAGTAGCTCACAAGCCGAATGTTTGAGTGTTTGGCACTCGGCAAAGCTTTCGTCACATAATCTGCTAACTGATCATTAGTCAAAATGTGATGGAGTGTAATGAGACCTTCTTGCAGTTTAGCTCTAACAAAATGACAATCCACCTTTATGTGTTTTGTCCTTTCATGAAAAACAGGCTTCTTTGCTATGTGAACAGGTGCTTGGCTGTCACAAAACACGAATATTGGCAAGTTACATGGCAAATCCAATTCAATCAGCAGCCTCTTTAACCATACTAACTCACCCACCACTTTTATAACAACTCTGTGCTCTGCTTCTGCTGAAGATAAATGTTTGTATCTTAGATTTCCAAATAATATTGTCCCCCCCATCAACACAACAAAGCCACTTACTAATTTTCTCGTATCAGGGCAGGCAACCCAATCTGAGTTACAATAAGCAGTAATTGAGCAATCTGCATTATTGGACAAGTGTATACCCATGAAAGGATCCCTCTTGAGGTATCTGAGAACATGGTAAGCAGCCTCTCTATTGTGCCATCAACTTTATGTTTAACATTGTAAACCCACCTGCATCCAATGGCCTTCTTCCCTATGGATATCTTAACAAGGTCCCAAGTGTCATTGGCATGAAGAGCTTCAAATTCTGATGTCATTGCTGCCTGTACTGCTTCCTCATAAGAATGTGGTTCATTGTCATGTAAAAGACCTTTAACTGCTTGTTGGCTATTCTGTCCAAGACTTGTGAAGGGCAGATAATTTTCAGATAAAACAAGGTGAGAATAAGGTGCTGAAGGTGATGAGGATTGGTGCGGTAATGAGGGAAGGTAGTGGCTATATTCTTTCAGGTAGATTGATGTAGTGTGAAGTCTACCACGCCTTCTTAAGTTTGATATTTGGTTCAGATGTTAAGTAGTGGTGTTTGGCAAGGGATGATCAATAGAGGTTTGGTCATTTAGTGGTGCTGGATTAATGTTCAGTGAATGATCAAAACTTGGAGGTTGTGGTGTTTGTGAAGGTACAGGTAAACTAGCATTAGTGACAACAAAAGTGGTGTCATCACCCAACACAGAGGTTCTGCTAAAGACACCCTAAGTGGAATTTAACATGCTTGGATAAGTATTTAAATGTTTCAATGTTGTTGTAAAACTATGATCAGATTCAGAAAAAACAAGAGGAAAAATGTTTTCATGGGAAGTCACATCTCTGGAAACATGTATCTTCTTGGTGCTTAGGTCCAGAACCTTATAACCCTTTGTATTGACAGGATATCCAACAAATATGTGAGGTTTGGTTCTTGGGAAATTTAGTTTTGTGGCAGACCTAAGGTGGGAGTAAGTAGGATTTTGGTAGTAAAGCATCTCAAAACGTGTTTTGTTATGAATTACTGAATTAGGAAGTCTGGTTACTAAGTAGGTGGCTGTCAAAGTATATGTAGTGGGGAGTTTGGACTGATACAATAACCTCCAAAAGGTGCTTGTGTTTCCTTTCCACAACACCATTTTGTTGTGGTGTATAAGGACAAGTCTTTTGATGTATTATCCCCTTGGTTAGGAAGTACATATTGGTTTCATTGTTAGTGAATTCTGTACCATTATCAGTTCTTATTGACTCTAACTAAACTGATTTTCAATCAGTGATATGAAGGATTTTACAGCCTGAAGGGTGTTGCTTTTGCAACTGAGGAGGTGAGTCCATGTTGATCTACTGAAACCATCAACTATGGTCAAAAAGCATTTGTCATTATTATGCCATTTATCTAATTTGGTTAAAGCAAGTTAATGAGCTCTCTCGATTAATTCCAGAATGCTTAGGAAATCTAAGCATGCTACAAGTGCACATACATGTGTATCGTGAATTAGTGTCTAAGGCACTAAGCTCTTCCCATAGTTTCCTAATTCTGGTATAGAAACCAGTGACATCTAAGTTCTCCTGATTGAGTTCATTGATTTCACACTGCAGTTGAAACAATTTAGCTCCATTAGTTTGATCGTACCTATCCTCCAGTTCATCCCCAAATTTCTTTCGCATTGTCTACGTACTGCAGGTTTGTCTCT-GAGATCATTGGATAGGGAATTGAATAGCCAGAGGTCACCATGTCATCGCACCTTTCCCACTGAGGGAAGGTATCTGAATCTAGCCATTGATGAAACCTGTATTATATTTTATAGATAATCCACGAAGGATGAGCGATATCCAGATCCATCGAACAGAACCTGAACACTCGTGGATCCGGCATTTTCAGATGGATGAACATAAAACACACTAGTCAGATCTGCAGAAACGTGAGTTGGAGCTTGATTCCCAGTCGAAGTTCCTTCCTGAGAGTTATTTTGTTCCATAATGTGCAAACAAATCTGCTTGTGAGTGAAGAAGAAAGAGAAAACCAGAAATTGGAGATACCTAAGATGCTGTACAATTCTATGTTTAGGGATACAATTATACGGAATAGACGAGAAGTATTTGGATCTTTTATAGAAGGAAAAACTCAAACACCATGTTGGAGATATACTTGTTGAAAGAGACTTATCCTTTGAGCTTCATTAATGCAGAACTCATGCAACATGTCATGGAGACGATATGTTTTGATTTGACCGTTAGATCTCTTTTGCATCACCATCACTAAATTCCTCCCGGTGAAGTCGCTCAAGTAAGTCTTTGCAACCTCCTCGATTTCACTGCCTTGAAGATCGGACTTTATTAGCCCCTCAGCAACTCATAAGCGAATACGTTTCCAAGCAGGAATATCAAAGCCTTGAGGAAATACTGCAAAATACAACTAGGCTGCCTTTCTCTGTTGCGCCAAATGATTGTAACTCGTTTTAACAAATTTCAAGCAACTTTTACTGTCATCTTTG</genome_strand>
        <mrna_strand>GAAGTATAAGGGTTTGTAAATACAAA-AATTACCAAAGAGCGAAGGAAGGACAGTGAAGTTGCCTTTGATGGCAATATACCTCAAGTGAAATAGCCGAGAAAACATCTCGGAGAATTCAAATATGAGGGATTGAATGTCCAACACTCTGATGAGTGGAAAGGAGTAGGGGATGAGTTGG....................................................................................................................................................................................................................................................................................................................................................ACTTCT-AAATTAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAA-T-GTGCT-TTTGG.........................................................................................................................................................................................................................................TCTGAGGAAAAAC-ATAAGAGAG...........................................................................................................................................ACCTAAC........................................................................................AT-GCTGTACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATCTTTAGGGATAAAATTATACGGAATAGA...............................................................................................................................................................................................................................................................................................................................................................GGAT-TGA--ATACATAATCGACGAGAAGTATTTGGATCTTCTATAGAAGGAAAAACTCGAACACCAGGTTGGAGATATACTTGTTGAAAGAGACTTATCCTTTCAGCCTCAATAATGCAGAACTCATGCAACATGTCATGGAGTCGACATGTTTTGATTTGACCGTTAGATCTCTTTTGCATCACCATCACTAAATTCCTACCGGCAAAGTCGCTCAAGTAAGTATCTGCAACCTCCTCGATTTCACTGCCTTGAAGATCGGACTTTATTAGCCCCTCAGCAACCCATAGCAGAATAAGTTTCCAAGCAGGAATATCAAAACCTTGAGGAAATACTCCAAAATACAAGAAGGCTGCCTTTCTCTGTTGCGGCAAATGATTGTAACTCGTTTCAACAAATTTCAAGCAGCTTTTATTGTCATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487103" ref_strand="+" ref_description="SGN-E487103 [cSTE-24-A22]">
      <seq>tttgctcttaccgacacccttatctttctctttcttgtatctctctctttcttttgcattcaccatagccaaattcttgcttttttcaaggctgattttatggagatctgagttttgctgttaataagctgagaaagaagaagtttgatagtcattgttctggagatctgagttttgcttctaataagctgagataaggaaggaatttgctactgactgttctggctttttgaggctgagttcatggtgatctgaggttttgctgttaataagctgagataaggaaggaattaaagggggtgtagtgatgaagatgaaactgaggaagccggttttgttcttgttgctactgactgtttttgccccaatagtcctttacaccgacactcttgggacttattttacttctccttcttcatcaaggactgagttcattgaagatctgtccacctttacttttggtggtgacgtccgacctctaaatgtgctgcctcaggagtcatccacatctctcaaagaaccacggggagatgtatattcagaaaattcaagccattccctttctaatgcctcagacactttaagcagcgaggatgctcggaaaacaagacaactaactgaagaatcatgaagcatcaaactgccactgggagcagccatgatggagtagaagtggctatgaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="89870" stop="92643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90170" g_stop="90269" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90270" i_stop="90517" i_length="248">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="90577" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="162" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90578" i_stop="90809" i_length="232">
            <donor d_prob="0.985" d_score="0.88"/>
            <acceptor a_prob="0.027" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90810" g_stop="90872" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="225" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90873" i_stop="91194" i_length="322">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91195" g_stop="91215" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="246" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91216" i_stop="91457" i_length="242">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91458" g_stop="91630" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="419" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91631" i_stop="91726" i_length="96">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91727" g_stop="91761" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="454" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91762" i_stop="91868" i_length="107">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91869" g_stop="91910" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="496" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91911" i_stop="92017" i_length="107">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.684" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92018" g_stop="92144" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="623" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92145" i_stop="92278" i_length="134">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92279" g_stop="92343" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="687" r_length="64" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E487103" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90170" e_stop="90269"/>
          <exon e_start="90518" e_stop="90577"/>
          <exon e_start="90810" e_stop="90872"/>
          <exon e_start="91195" e_stop="91215"/>
          <exon e_start="91458" e_stop="91630"/>
          <exon e_start="91727" e_stop="91761"/>
          <exon e_start="91869" e_stop="91910"/>
          <exon e_start="92018" e_stop="92144"/>
          <exon e_start="92279" e_stop="92343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTTACCGACACCCTTATCTTTCTCTTCCTTGTATCTCTC--TTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATGGTATGTTCAATCTCGTTTTCTCTTTTACTTGAACCCATTTTCTGTATTCTTTTTCTTGCCTGAAAAATCATCATTTGGGTTCACTTACAGTGGTGTAGTATAGAGTTAGAACCCATACATTTTACAGTTTTTTCTTAAAGGAAATTGAGTTTTTCCTTCGTTTTCTCAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTAAGGTTAGGTTCAATTGAGTATTGATTTGGTATTGATATTTGTGTTAAAGGAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTGGTATGTTTACTTCGACCATTTTTTGTGTTTGGGATTTTTGTTTTTGTTGTTCTTAGTTGCAAATTCGCCATCTGGGTTCAGTTTCAGTGTAGTACAATAATTGATACATTCTACAGCAATTTTGAGATTTGTTAAGGAAATTGAGTTTTTCTTTCGTTTTGCCAAGTGTGTCTTCTTCAGTTTCTTGTATTTTTACGGTTAGGTTCAATTGTATTTGATAGTTGTGCTGAAGGAGATCTGAATTTTACTTCTAATAAGCTGAGATAAGGAAGAAATTTGCTAGCGACTGTTCTGGGATGCTCAGTTCCTCTTCTGTTTACTTCGACCATTGTTGTGTGGGGGGTTTCTAGTTTTGTTGTTTTTAATTGCAAAATCACCATTTGGGTTCAGTTACAGTGGTTTTGTGTAGTATTATAAACAATACATTCTACAGCATTGTATAGATTTGTTGAGGAAATTGAGTTTTTCCTTCGTTTTCATAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTACGGTTAGGTTCGATTGAGTATTGATTTGGTATTTGTATTTGTGCTGAAGGAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATGGTATGTTCACTTCTCTTCTCTTTACTTCTTCCATCTCTTATTATTCTTTACTGCAAAATCATCAATTTGGGTTCACTTTCAGTGGTGTAGTGCAGTACTTCAATCAGTACATTGTATAGTAATTCATAGATTTATTAGAGGAATTGAGTTTTTCCTTCATTCCCCTAGCGGGTGTTCAATCTTTTTTAGGTTTTTCATTTGTTCAATTGAGTAATGATTTGGTATTGACATTTGTGCTGAAGGTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCATGTAAGTTTCTTAATTGATTCTCTGTAATTCTTAAAATGGGAATAGCCCATCAAGGATAATGTTTGATGTATTGGCATTCTATGATTATTTCTGCAGCAAGGACTGAGTTCATTGAAGATCTGTCCACCTTTGTAAGTCGGATTTGTGTTTTATCCACTTCATTGTTTAGTGTCTTTTATGTGTTTGTTAAAGCATGAATATGTAATATTTTATTTACAATTCTGATTCCATGATGCAGACTTTTGGTGGTGACGTCCGACCTCTAAATGTGCTCCCTCAGGTATCAATCGTAATTCTAGTCTGAGGATTTATATTTGCTCTTAGATTGAGGCATTGAGCAACATTTGGTCACTGTGCTTAACTTTCCATGTCTACAAATACTAATAGGAGTCATCCACATCTCTCAAAGAACCACGGGGCGATGTATATTCAGAAAATTCAAGCCAAACCATTTCTAATGCCTCAGACACTTTAGGCAGCGAGGATGCTCGGAAAACAAGACAACTAACTGAAGGTTTTTGTTCATTTATGTCTGTCTATATTTCGAACTTAGAGATCTGGAATGCATGAAAAAATCTTGATCAAGTTTCATGTTGCTTCTATAGTTTTTGAACTGTCTATCTCTAACATGTCATCTTTATTCAGCAGAATCATTGAAGCATCAAACTGCCACTGGAAGCAGCAATGATGGAGTAGAAGTGGCTATGAATGGA</genome_strand>
        <mrna_strand>TTTGCTCTTACCGACACCCTTATCTTTCTCTTTCTTGTATCTCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTGCTTTTTTCAAGGCTGATTTTATG........................................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTGTTAATAAGCTGAGAAAGAAGAAGTTTGATAGTCATTGTTCTG........................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGGAATTTGCTACTGACTGTTCTGG..................................................................................................................................................................................................................................................................................................................................CTTTTTGAGGCTGAGTTCATG..................................................................................................................................................................................................................................................GTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAAAGGGGGTGTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTACTGACTGTTTTTGCCCCAATAGTCCTTTACACCGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCAT................................................................................................CAAGGACTGAGTTCATTGAAGATCTGTCCACCTTT...........................................................................................................ACTTTTGGTGGTGACGTCCGACCTCTAAATGTGCTGCCTCAG...........................................................................................................GAGTCATCCACATCTCTCAAAGAACCACGGGGAGATGTATATTCAGAAAATTCAAGCCATTCCCTTTCTAATGCCTCAGACACTTTAAGCAGCGAGGATGCTCGGAAAACAAGACAACTAACTGAAG......................................................................................................................................AATCA-TGAAGCATCAAACTGCCACTGGGAGCAGCCATGATGGAGTAGAAGTGGCTATGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487035" ref_strand="+" ref_description="SGN-E487035 [cSTE-24-C21]">
      <seq>tttgctcttaccgacacccttatctttctctttcttgtatctctctctttcttttgcattcaccatagccaaattcttgcttttttcaaggctgattttatggagatctgagttttgctgttaataagctgagaaagaagaagtttgatagtcattgttctggagatctgagttttgcttctaataagctgagataaggaaggaatttgctactgactgttctggctttttgaggctgagttcatggtgatctgaggttttgctgttaataagctgagataaggaaggaattaaagggggtgtagtgatgaagatgaaactgaggaagccggttttgttcttgttgctactgactgtttttgccccaatagtcctttacaccgacactcttgggacttattttacttctccttcttcatcaaggactgagttcattgaagatctgtccacctttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="89870" stop="92061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90170" g_stop="90269" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90270" i_stop="90517" i_length="248">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="90577" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="162" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90578" i_stop="90809" i_length="232">
            <donor d_prob="0.985" d_score="0.88"/>
            <acceptor a_prob="0.027" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90810" g_stop="90872" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="225" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90873" i_stop="91194" i_length="322">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91195" g_stop="91215" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="246" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91216" i_stop="91457" i_length="242">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91458" g_stop="91630" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="419" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91631" i_stop="91726" i_length="96">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91727" g_stop="91761" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="454" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91762" i_stop="91868" i_length="107">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91869" g_stop="91874" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="460" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E487035" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90170" e_stop="90269"/>
          <exon e_start="90518" e_stop="90577"/>
          <exon e_start="90810" e_stop="90872"/>
          <exon e_start="91195" e_stop="91215"/>
          <exon e_start="91458" e_stop="91630"/>
          <exon e_start="91727" e_stop="91761"/>
          <exon e_start="91869" e_stop="91874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCTTACCGACACCCTTATCTTTCTCTTCCTTGTATCTCTC--TTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATGGTATGTTCAATCTCGTTTTCTCTTTTACTTGAACCCATTTTCTGTATTCTTTTTCTTGCCTGAAAAATCATCATTTGGGTTCACTTACAGTGGTGTAGTATAGAGTTAGAACCCATACATTTTACAGTTTTTTCTTAAAGGAAATTGAGTTTTTCCTTCGTTTTCTCAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTAAGGTTAGGTTCAATTGAGTATTGATTTGGTATTGATATTTGTGTTAAAGGAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTGGTATGTTTACTTCGACCATTTTTTGTGTTTGGGATTTTTGTTTTTGTTGTTCTTAGTTGCAAATTCGCCATCTGGGTTCAGTTTCAGTGTAGTACAATAATTGATACATTCTACAGCAATTTTGAGATTTGTTAAGGAAATTGAGTTTTTCTTTCGTTTTGCCAAGTGTGTCTTCTTCAGTTTCTTGTATTTTTACGGTTAGGTTCAATTGTATTTGATAGTTGTGCTGAAGGAGATCTGAATTTTACTTCTAATAAGCTGAGATAAGGAAGAAATTTGCTAGCGACTGTTCTGGGATGCTCAGTTCCTCTTCTGTTTACTTCGACCATTGTTGTGTGGGGGGTTTCTAGTTTTGTTGTTTTTAATTGCAAAATCACCATTTGGGTTCAGTTACAGTGGTTTTGTGTAGTATTATAAACAATACATTCTACAGCATTGTATAGATTTGTTGAGGAAATTGAGTTTTTCCTTCGTTTTCATAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTACGGTTAGGTTCGATTGAGTATTGATTTGGTATTTGTATTTGTGCTGAAGGAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATGGTATGTTCACTTCTCTTCTCTTTACTTCTTCCATCTCTTATTATTCTTTACTGCAAAATCATCAATTTGGGTTCACTTTCAGTGGTGTAGTGCAGTACTTCAATCAGTACATTGTATAGTAATTCATAGATTTATTAGAGGAATTGAGTTTTTCCTTCATTCCCCTAGCGGGTGTTCAATCTTTTTTAGGTTTTTCATTTGTTCAATTGAGTAATGATTTGGTATTGACATTTGTGCTGAAGGTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCATGTAAGTTTCTTAATTGATTCTCTGTAATTCTTAAAATGGGAATAGCCCATCAAGGATAATGTTTGATGTATTGGCATTCTATGATTATTTCTGCAGCAAGGACTGAGTTCATTGAAGATCTGTCCACCTTTGTAAGTCGGATTTGTGTTTTATCCACTTCATTGTTTAGTGTCTTTTATGTGTTTGTTAAAGCATGAATATGTAATATTTTATTTACAATTCTGATTCCATGATGCAGACTTTT</genome_strand>
        <mrna_strand>TTTGCTCTTACCGACACCCTTATCTTTCTCTTTCTTGTATCTCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTGCTTTTTTCAAGGCTGATTTTATG........................................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTGTTAATAAGCTGAGAAAGAAGAAGTTTGATAGTCATTGTTCTG........................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGGAATTTGCTACTGACTGTTCTGG..................................................................................................................................................................................................................................................................................................................................CTTTTTGAGGCTGAGTTCATG..................................................................................................................................................................................................................................................GTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAAAGGGGGTGTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTACTGACTGTTTTTGCCCCAATAGTCCTTTACACCGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCAT................................................................................................CAAGGACTGAGTTCATTGAAGATCTGTCCACCTTT...........................................................................................................ACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336579" ref_strand="+" ref_description="SGN-E336579 [cTOE-4-C8]">
      <seq>gacacccttatctttctcttccttgtatctctctttcttttgcattcaccatagccaaattcttccttttttcaaggctgattttatggagatctgagttttgctgctnntnncctgagaagaaggaagtttgatagtcgttattctggagatctgagttttgcttctaataagctgagataaggaagctaccgaatgttcttcctttttgaggctgagttcatggtgatctgaggttttgctgttaataagctgagataaggaaggaattagagggggtttagtgatgaagatgaaactgaggaagccggttttgttcttgttgctagtgactgtttttgcccctatagtcctttacactgacactcttgggacttattttacttctccttcttcatcaaggactgagttcattgaagatctggccacctttacttttggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="89882" stop="92061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90182" g_stop="90269" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90270" i_stop="90517" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="90577" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="148" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90578" i_stop="91138" i_length="561">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91139" g_stop="91215" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="225" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91216" i_stop="91457" i_length="242">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91458" g_stop="91630" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="398" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91631" i_stop="91726" i_length="96">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91727" g_stop="91761" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="433" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91762" i_stop="91868" i_length="107">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91869" g_stop="91880" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="445" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E336579" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90182" e_stop="90269"/>
          <exon e_start="90518" e_stop="90577"/>
          <exon e_start="91139" e_stop="91215"/>
          <exon e_start="91458" e_stop="91630"/>
          <exon e_start="91727" e_stop="91761"/>
          <exon e_start="91869" e_stop="91880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCCTTATCTTTCTCTTCCTTGTATCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATGGTATGTTCAATCTCGTTTTCTCTTTTACTTGAACCCATTTTCTGTATTCTTTTTCTTGCCTGAAAAATCATCATTTGGGTTCACTTACAGTGGTGTAGTATAGAGTTAGAACCCATACATTTTACAGTTTTTTCTTAAAGGAAATTGAGTTTTTCCTTCGTTTTCTCAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTAAGGTTAGGTTCAATTGAGTATTGATTTGGTATTGATATTTGTGTTAAAGGAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTGGTATGTTTACTTCGACCATTTTTTGTGTTTGGGATTTTTGTTTTTGTTGTTCTTAGTTGCAAATTCGCCATCTGGGTTCAGTTTCAGTGTAGTACAATAATTGATACATTCTACAGCAATTTTGAGATTTGTTAAGGAAATTGAGTTTTTCTTTCGTTTTGCCAAGTGTGTCTTCTTCAGTTTCTTGTATTTTTACGGTTAGGTTCAATTGTATTTGATAGTTGTGCTGAAGGAGATCTGAATTTTACTTCTAATAAGCTGAGATAAGGAAGAAATTTGCTAGCGACTGTTCTGGGATGCTCAGTTCCTCTTCTGTTTACTTCGACCATTGTTGTGTGGGGGGTTTCTAGTTTTGTTGTTTTTAATTGCAAAATCACCATTTGGGTTCAGTTACAGTGGTTTTGTGTAGTATTATAAACAATACATTCTACAGCATTGTATAGATTTGTTGAGGAAATTGAGTTTTTCCTTCGTTTTCATAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTACGGTTAGGTTCGATTGAGTATTGATTTGGTATTTGTATTTGTGCTGAAGGAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATGGTATGTTCACTTCTCTTCTCTTTACTTCTTCCATCTCTTATTATTCTTTACTGCAAAATCATCAATTTGGGTTCACTTTCAGTGGTGTAGTGCAGTACTTCAATCAGTACATTGTATAGTAATTCATAGATTTATTAGAGGAATTGAGTTTTTCCTTCATTCCCCTAGCGGGTGTTCAATCTTTTTTAGGTTTTTCATTTGTTCAATTGAGTAATGATTTGGTATTGACATTTGTGCTGAAGGTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCATGTAAGTTTCTTAATTGATTCTCTGTAATTCTTAAAATGGGAATAGCCCATCAAGGATAATGTTTGATGTATTGGCATTCTATGATTATTTCTGCAGCAAGGACTGAGTTCATTGAAGATCTGTCCACCTTTGTAAGTCGGATTTGTGTTTTATCCACTTCATTGTTTAGTGTCTTTTATGTGTTTGTTAAAGCATGAATATGTAATATTTTATTTACAATTCTGATTCCATGATGCAGACTTTTGGTGGT</genome_strand>
        <mrna_strand>GACACCCTTATCTTTCTCTTCCTTGTATCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATG........................................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTGCTNNTNNCCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATG..................................................................................................................................................................................................................................................GTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCAT................................................................................................CAAGGACTGAGTTCATTGAAGATCTGGCCACCTTT...........................................................................................................ACTTTTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739387" ref_strand="+" ref_description="SGN-E739387 [LC17BA03]">
      <seq>cttctttgtatctctctttcttttgcattcaccatagccaaattcttccttttttcaaggctgattttatggagatctgagttttgctgctaataagctgagaagaaggaagtttgatagtcgttattctggagatctgagttttgcttctaataagctgagataaggaagctaccgaatgttcttcctttttgaggctgagttcatggtgatctgaggttttgctgttaataagctgagataaggaaggaattagagggggtttagtgatgaagatgaaactgaggaagccggttttgttcttgttgctagtgactgtttttgcccctatagtcctttacactgacactcttgggacttattttacttctccttcttcatcaaggactgagttcattgaagatctgtccacctttacttttggtggtgacgtccgacctctaaatgtgctccctcaggagtcatccacatctctcaaagaaccacggggcgatgtatattcagaaaattcaagccaaaccatttctaatgcctcagacactttaggcagcgaggatgctcggaaaacaagacaactaactgaagaatcattgaagcatcaaactgccactggaagcagcaatgatggagtagaagtggctatgaatggaaatcacataagtcaggttaccgataacttgcacgaaccacaacaaacagacaaaacttcaccgaaacttgtgtcagcggggaaagacgaaagcatagcaatggaaaccaactcaaagaaaaagacgagttcaacagatcctaaccagaccttggattccactaaaactgaaacaagacatggatcacacactgttcaaaccagtggtaaagttgtatctggagagacagcaaggggcaaagatgaagagcggaatgcgcaaattgtcccccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="89899" stop="94618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90199" g_stop="90269" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90270" i_stop="90517" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="90577" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="131" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90578" i_stop="91138" i_length="561">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91139" g_stop="91215" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="208" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91216" i_stop="91457" i_length="242">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91458" g_stop="91630" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="381" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91631" i_stop="91726" i_length="96">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91727" g_stop="91761" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="416" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91762" i_stop="91868" i_length="107">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91869" g_stop="91910" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="458" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91911" i_stop="92017" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92018" g_stop="92144" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="585" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="92145" i_stop="92278" i_length="134">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92279" g_stop="92511" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="818" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92512" i_stop="94211" i_length="1700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94212" g_stop="94318" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="925" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E739387" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90199" e_stop="90269"/>
          <exon e_start="90518" e_stop="90577"/>
          <exon e_start="91139" e_stop="91215"/>
          <exon e_start="91458" e_stop="91630"/>
          <exon e_start="91727" e_stop="91761"/>
          <exon e_start="91869" e_stop="91910"/>
          <exon e_start="92018" e_stop="92144"/>
          <exon e_start="92279" e_stop="92511"/>
          <exon e_start="94212" e_stop="94318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTGTATCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATGGTATGTTCAATCTCGTTTTCTCTTTTACTTGAACCCATTTTCTGTATTCTTTTTCTTGCCTGAAAAATCATCATTTGGGTTCACTTACAGTGGTGTAGTATAGAGTTAGAACCCATACATTTTACAGTTTTTTCTTAAAGGAAATTGAGTTTTTCCTTCGTTTTCTCAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTAAGGTTAGGTTCAATTGAGTATTGATTTGGTATTGATATTTGTGTTAAAGGAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTGGTATGTTTACTTCGACCATTTTTTGTGTTTGGGATTTTTGTTTTTGTTGTTCTTAGTTGCAAATTCGCCATCTGGGTTCAGTTTCAGTGTAGTACAATAATTGATACATTCTACAGCAATTTTGAGATTTGTTAAGGAAATTGAGTTTTTCTTTCGTTTTGCCAAGTGTGTCTTCTTCAGTTTCTTGTATTTTTACGGTTAGGTTCAATTGTATTTGATAGTTGTGCTGAAGGAGATCTGAATTTTACTTCTAATAAGCTGAGATAAGGAAGAAATTTGCTAGCGACTGTTCTGGGATGCTCAGTTCCTCTTCTGTTTACTTCGACCATTGTTGTGTGGGGGGTTTCTAGTTTTGTTGTTTTTAATTGCAAAATCACCATTTGGGTTCAGTTACAGTGGTTTTGTGTAGTATTATAAACAATACATTCTACAGCATTGTATAGATTTGTTGAGGAAATTGAGTTTTTCCTTCGTTTTCATAAGTGGGTGTTGTTCAGTTTCTTGTATTTTTACGGTTAGGTTCGATTGAGTATTGATTTGGTATTTGTATTTGTGCTGAAGGAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATGGTATGTTCACTTCTCTTCTCTTTACTTCTTCCATCTCTTATTATTCTTTACTGCAAAATCATCAATTTGGGTTCACTTTCAGTGGTGTAGTGCAGTACTTCAATCAGTACATTGTATAGTAATTCATAGATTTATTAGAGGAATTGAGTTTTTCCTTCATTCCCCTAGCGGGTGTTCAATCTTTTTTAGGTTTTTCATTTGTTCAATTGAGTAATGATTTGGTATTGACATTTGTGCTGAAGGTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCATGTAAGTTTCTTAATTGATTCTCTGTAATTCTTAAAATGGGAATAGCCCATCAAGGATAATGTTTGATGTATTGGCATTCTATGATTATTTCTGCAGCAAGGACTGAGTTCATTGAAGATCTGTCCACCTTTGTAAGTCGGATTTGTGTTTTATCCACTTCATTGTTTAGTGTCTTTTATGTGTTTGTTAAAGCATGAATATGTAATATTTTATTTACAATTCTGATTCCATGATGCAGACTTTTGGTGGTGACGTCCGACCTCTAAATGTGCTCCCTCAGGTATCAATCGTAATTCTAGTCTGAGGATTTATATTTGCTCTTAGATTGAGGCATTGAGCAACATTTGGTCACTGTGCTTAACTTTCCATGTCTACAAATACTAATAGGAGTCATCCACATCTCTCAAAGAACCACGGGGCGATGTATATTCAGAAAATTCAAGCCAAACCATTTCTAATGCCTCAGACACTTTAGGCAGCGAGGATGCTCGGAAAACAAGACAACTAACTGAAGGTTTTTGTTCATTTATGTCTGTCTATATTTCGAACTTAGAGATCTGGAATGCATGAAAAAATCTTGATCAAGTTTCATGTTGCTTCTATAGTTTTTGAACTGTCTATCTCTAACATGTCATCTTTATTCAGCAGAATCATTGAAGCATCAAACTGCCACTGGAAGCAGCAATGATGGAGTAGAAGTGGCTATGAATGGAAATCACATAAGTCAGGTTACCGATAACTTGCACGAACCACAACAAACAGACAAAACTTCACCGAAACTTGTGTCAGCGGGGAAAGACGAAAGCATAGCAATGGAAACCAACTCAAAGAAAAAGACGAGTTCAACAGATCCTAACCAGACCTTGGATTCCACTAAAACTGTAACTACCTTGCATATTCTCTGCTTTTGCATGACTCATCTAAATTTCCAGTCTGCAGCTATTTGAATGTTTTATGGTGTTTGTTGTTCGTTCTCTCAAACTGTTTAGTTATCCTACATCAATTGAGGGATGTGGATTTGGTCTTTATATGTTCTTTGGTAATTTCTCACCTCATGAGCTAGTATTTGGAGTTAGGCCCAAGGTCCATTTCTTTACATGGTATGAGTGTCAGACTCATCCCACTTTTTATTTACCTGATTATGGGGCGTCATATATGTTGTCCATGCTCTAGTTGACAAGCCTGGACGTGCAGGGGGTATTAAGTTATTCCACATCTGTTGTAGTTGTCGATGTGAATTTTGTCTCCTTATAGCTTTTGGGGTTGAATTAGGCCTGATCCTCATTTCCTTGCACAAAAATTCATGCGTTAACATTGTGATATTGTAATCGTTTTCTTTACTGTCTTAATCTGAGGATCGATCTATAAGGTGCGCACTCTGGCCCTTTTCTTGGGTGGCCATAGAATATTTTTTTGTTCTTGGTCTTTCACATGTCAACTTTTGGGCTCATAAATGCTTCAGTGTCATGGGAGTTTCTGTGTATCTTCTTTTGCTTCTTCAGTACTATGTGAAATGCTGGGAGGATTTAAAGATGATTTTCTCATCATCATGGATTTACACCCGTGATCTATCTTGAAACTTTGCACATTAACCCTGGATGTCATTGAGTTAAAGGATAGTATATAGAATGGGGTTCTGTGGTGCATGTTATTTGCAATAATATTATGTTAATTGGCGGAACTAGTAATGGAACCAAAAGTTGGAATTATAGAGAAGCACGATAGGGCATAACACTCTTAGGATTAGTAGAATTATGACTAAATCCATGTTCAAATTTTGCAAGTTTATACTCCATTAGACGAATGACAGTGAAATTAGACGCGAATGTTGTGCTTAGATATTGATAGATTAAGATGCAACGCATTGAATTAAAATTGGATAGTCTGTATAAAAGAAGTAAAATAAGATAGCTAAAATAGGGGAATCCTCGTAGAGTGTTATGCGCCAAAAAACTTCTTACGAAAGTGAAAAACAAGTTGTATCAAACACTTGCGGGAGCAACAATATTGTATAGGAGTGAAGTTGGGCTGTTAAAGACCATTATATCTATCTTTTCCAACATATGCACAAGATGAATGGCATAAAAATGCATGTTAAGATGGATTGAAGTTGTTATTATACTTACATTAAGTTTGGTGGTTGTTGCGGTGTTGTCAAAGGCGAAAAGCACTGAATTTGTGCTAAGGTTTTTAGTACAAAGCACAATTAAAGTATGAGCTTTTATAAGGGAAGGCTCAATGAGAGATGCTTTTATTCTGGTTGGAAAATCATATGTCCATATGGGATAAGTATGAGATTTGGATTATCAGTAATTTGCCAGACAGATTATTTAGTGGTGGAATACAATGGAGTTAAATAGAGAAGATTAGATGCACGGATTCATATAGCTGATCCTACTAATTTAGTTTGTGATTGTGTGACAATGGGTAATCTGCTATATTTTGGAAAAGATTTGTATGGTTGTGCCGTTGTGTGGACTGCATATATTGGTTGATCTGCAATAATTATCTAGGAAACCAGAGATAAAAAATTGACCCTTCTACATGAATTGAACTTGCTTATGTTTGGATTGGTTTCTAGGAAACAAGACAT-GATCAACACACTGTTCAAACCAGTGGTAAAGTTGTATCTGGAGAGACAGCAAGGGGCAAAGATGAAGAGCGGAATGCGCAAATTGTCCCCCCTGA</genome_strand>
        <mrna_strand>CTTCTTTGTATCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATG........................................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATG..................................................................................................................................................................................................................................................GTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCAT................................................................................................CAAGGACTGAGTTCATTGAAGATCTGTCCACCTTT...........................................................................................................ACTTTTGGTGGTGACGTCCGACCTCTAAATGTGCTCCCTCAG...........................................................................................................GAGTCATCCACATCTCTCAAAGAACCACGGGGCGATGTATATTCAGAAAATTCAAGCCAAACCATTTCTAATGCCTCAGACACTTTAGGCAGCGAGGATGCTCGGAAAACAAGACAACTAACTGAAG......................................................................................................................................AATCATTGAAGCATCAAACTGCCACTGGAAGCAGCAATGATGGAGTAGAAGTGGCTATGAATGGAAATCACATAAGTCAGGTTACCGATAACTTGCACGAACCACAACAAACAGACAAAACTTCACCGAAACTTGTGTCAGCGGGGAAAGACGAAAGCATAGCAATGGAAACCAACTCAAAGAAAAAGACGAGTTCAACAGATCCTAACCAGACCTTGGATTCCACTAAAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAAGACATGGATC-ACACACTGTTCAAACCAGTGGTAAAGTTGTATCTGGAGAGACAGCAAGGGGCAAAGATGAAGAGCGGAATGCGCAAATTGTCCCCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211221" ref_strand="+" ref_description="SGN-E211221 [cLEC-70-N3]">
      <seq>ttgcacgaaccacaacaaacagacaaaacttcaccgaaacttgtgtcagcggggaaagacgaaagcatagcaatggaaaccaactcaaagaaaaagacgagttcaacagatcctaaccagaccttggattccactaaaactgaaacaagacatgatcaacacactgttcaaaccagtggtaaagttgtatctggagagacagcaaggggcaaagatgaagagcggaatgcgcaaattgtcccccctgatgcccgtgttcgccagctcaaggatcagctcattagggcgaaggtctacctttcactctcggcaacacgaagcaatccccacttcattagagaacttcgcttgcggataaaggaatcgctgcgagcacttggtgaggccactaaggattctgatctgtctagaagtgccaatgagaagttgaaggcaatggagcaaacattggccaaagggaagcagattcaagatgattgtgctactattgtaaagaagcttcgtgccatgcttcactcagcagaagagcagctccgtgtccacaagaaagcaacattgtatttaacacacttaactgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="92071" stop="95115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92371" g_stop="92511" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92512" i_stop="94211" i_length="1700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94212" g_stop="94483" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="413" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94484" i_stop="94648" i_length="165">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94649" g_stop="94815" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="580" r_length="167" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E211221" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92371" e_stop="92511"/>
          <exon e_start="94212" e_stop="94483"/>
          <exon e_start="94649" e_stop="94815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACGAACCACAACAAACAGACAAAACTTCACCGAAACTTGTGTCAGCGGGGAAAGACGAAAGCATAGCAATGGAAACCAACTCAAAGAAAAAGACGAGTTCAACAGATCCTAACCAGACCTTGGATTCCACTAAAACTGTAACTACCTTGCATATTCTCTGCTTTTGCATGACTCATCTAAATTTCCAGTCTGCAGCTATTTGAATGTTTTATGGTGTTTGTTGTTCGTTCTCTCAAACTGTTTAGTTATCCTACATCAATTGAGGGATGTGGATTTGGTCTTTATATGTTCTTTGGTAATTTCTCACCTCATGAGCTAGTATTTGGAGTTAGGCCCAAGGTCCATTTCTTTACATGGTATGAGTGTCAGACTCATCCCACTTTTTATTTACCTGATTATGGGGCGTCATATATGTTGTCCATGCTCTAGTTGACAAGCCTGGACGTGCAGGGGGTATTAAGTTATTCCACATCTGTTGTAGTTGTCGATGTGAATTTTGTCTCCTTATAGCTTTTGGGGTTGAATTAGGCCTGATCCTCATTTCCTTGCACAAAAATTCATGCGTTAACATTGTGATATTGTAATCGTTTTCTTTACTGTCTTAATCTGAGGATCGATCTATAAGGTGCGCACTCTGGCCCTTTTCTTGGGTGGCCATAGAATATTTTTTTGTTCTTGGTCTTTCACATGTCAACTTTTGGGCTCATAAATGCTTCAGTGTCATGGGAGTTTCTGTGTATCTTCTTTTGCTTCTTCAGTACTATGTGAAATGCTGGGAGGATTTAAAGATGATTTTCTCATCATCATGGATTTACACCCGTGATCTATCTTGAAACTTTGCACATTAACCCTGGATGTCATTGAGTTAAAGGATAGTATATAGAATGGGGTTCTGTGGTGCATGTTATTTGCAATAATATTATGTTAATTGGCGGAACTAGTAATGGAACCAAAAGTTGGAATTATAGAGAAGCACGATAGGGCATAACACTCTTAGGATTAGTAGAATTATGACTAAATCCATGTTCAAATTTTGCAAGTTTATACTCCATTAGACGAATGACAGTGAAATTAGACGCGAATGTTGTGCTTAGATATTGATAGATTAAGATGCAACGCATTGAATTAAAATTGGATAGTCTGTATAAAAGAAGTAAAATAAGATAGCTAAAATAGGGGAATCCTCGTAGAGTGTTATGCGCCAAAAAACTTCTTACGAAAGTGAAAAACAAGTTGTATCAAACACTTGCGGGAGCAACAATATTGTATAGGAGTGAAGTTGGGCTGTTAAAGACCATTATATCTATCTTTTCCAACATATGCACAAGATGAATGGCATAAAAATGCATGTTAAGATGGATTGAAGTTGTTATTATACTTACATTAAGTTTGGTGGTTGTTGCGGTGTTGTCAAAGGCGAAAAGCACTGAATTTGTGCTAAGGTTTTTAGTACAAAGCACAATTAAAGTATGAGCTTTTATAAGGGAAGGCTCAATGAGAGATGCTTTTATTCTGGTTGGAAAATCATATGTCCATATGGGATAAGTATGAGATTTGGATTATCAGTAATTTGCCAGACAGATTATTTAGTGGTGGAATACAATGGAGTTAAATAGAGAAGATTAGATGCACGGATTCATATAGCTGATCCTACTAATTTAGTTTGTGATTGTGTGACAATGGGTAATCTGCTATATTTTGGAAAAGATTTGTATGGTTGTGCCGTTGTGTGGACTGCATATATTGGTTGATCTGCAATAATTATCTAGGAAACCAGAGATAAAAAATTGACCCTTCTACATGAATTGAACTTGCTTATGTTTGGATTGGTTTCTAGGAAACAAGACATGATCAACACACTGTTCAAACCAGTGGTAAAGTTGTATCTGGAGAGACAGCAAGGGGCAAAGATGAAGAGCGGAATGCGCAAATTGTCCCCCCTGATGCCCGTGTTCGCCAGCTCAAGGATCAGCTCATTAGGGCGAAGGTCTACCTTTCACTCTCGGCAACACGAAGCAATCCCCACTTCATTAGAGAACTTCGCTTGCGGATAAAGGAATCGCTGCGAGCACTTGGTGAGGCCACTAAGGATTCTGATCTGTCTAGAAGGTTAGTTTTATTTTTTAACAATTAGGTTCATCTTATTCCTGTCAAAGTGGCTTTGGGATGGTCCTGAGTCCTACCTTCCCCAGTGATTTTGCCATTTCATTGCATAGTGTCTACTAGCCTGATCCATTTGATTTATCTACCAATACATATGATTTCTTTTTATAGTGCCAATGAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTA</genome_strand>
        <mrna_strand>TTGCACGAACCACAACAAACAGACAAAACTTCACCGAAACTTGTGTCAGCGGGGAAAGACGAAAGCATAGCAATGGAAACCAACTCAAAGAAAAAGACGAGTTCAACAGATCCTAACCAGACCTTGGATTCCACTAAAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAAGACATGATCAACACACTGTTCAAACCAGTGGTAAAGTTGTATCTGGAGAGACAGCAAGGGGCAAAGATGAAGAGCGGAATGCGCAAATTGTCCCCCCTGATGCCCGTGTTCGCCAGCTCAAGGATCAGCTCATTAGGGCGAAGGTCTACCTTTCACTCTCGGCAACACGAAGCAATCCCCACTTCATTAGAGAACTTCGCTTGCGGATAAAGGAATCGCTGCGAGCACTTGGTGAGGCCACTAAGGATTCTGATCTGTCTAGAAG.....................................................................................................................................................................TGCCAATGAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAAGCAACATTGTATTTAACACACTTAACTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457654" ref_strand="+" ref_description="SGN-E457654 [cPRO-3-G12]">
      <seq>gagaagttgaaggcaatggagcaaacattggccaaagggaagcaaattcaagatgattgtgctactattgtaaagaagcttcgtgccatgcttcactcagcagaagagcagctccgtgtccacaagaagcaaacattgtatttaacacacttaactgctaagacacttccaaagggtcttcattgtcttcctttacgcctttcaacagagtatttcaagttaaattcttcccaacagcattttccacatcaagagaatttagaaaatcccaagctataccactatgcactcttctcagacaacatattagccgctgctgtcgtcgtaaactcaactgtttcccatgcaaaggatccatcaaagcacgttttccatatagtgactgacaggcttaattttgctgcaatgagaatgtggtttttggctaatccaccaaagtatgctacagtagatgttcaaaatgttgaggaattcacctggctaaattcaagttacagtccagttctgaagcaattgaattctcagtccatgatagattattacttcagatctcgtgctgattctgatccaaatgtgaagtttaggaatccaaagtacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctcttcttggatgatgatattgttgtgcaaaaggatcttggcggcctttggtcacttgatcttaagggtaaggtgattggtgtggttgaaacctgtggnagaagctttcatcggtttgaccgctacctcaactttctcaatcctctgatctctaaaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94356" stop="96002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94656" g_stop="95006" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95007" i_stop="95229" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="95702" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="823" r_length="472" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E457654" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94656" e_stop="95006"/>
          <exon e_start="95230" e_stop="95702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCGCATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAGGTAAACGAGCTATTGTCAGAAACTCATCTTGTATATTGAGGTTGCATCTGGCTCAGAAATTCACTTTATTCTTTCCAAGTCTTTTCCTATATGATTACATAGAAACATGCCCATCTGCATGTTTAAGTTTATAATATCTCAACCTTTATGTCTCTTCAGGGACATCCAATAAATTTGGAATATCTCAATCTTCATTTATAACTTTTTCTGTATATGGTGGCAGGATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGA</genome_strand>
        <mrna_strand>GAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAAATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCACATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAG...............................................................................................................................................................................................................................GATCCATCAAAGCACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCCACCAAAGTATGCTACAGTAGATGTTCAAAATGTTGAGGAATTCACCTGGCTAAATTCAAGTTACAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCCATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAGTACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTGATTGGTGTGGTTGAAACCTGTGGNAGAAGCTTTCATCGGTTTGACCGCTACCTCAACTTTCTCAATCCTCTGATCTCT-AAAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429638" ref_strand="+" ref_description="SGN-E429638 [STM-52-K18]">
      <seq>gagaagttgaaggcaatggagcaaacattggccaaagggaagcaaattcaagatgattgtgctactattgtaaagaagcttcgtgccatgcttcactcagcagaagagcagctccgtgtccacaagaagcaaacattgtatttaacacacttaactgctaagacacttccaaagggtcttcattgtcttcctttacgcctttcaacagagtatttcaagttaaattcttcccaacagcattttccacatcaagagaatttagaaaatcccaagctataccactatgcactcttctcagacaacatattagccgctgctgtcgtcgtaaactcaactgtttcccatgcaaaggatccatcaaagcacgttttccatatagtgactgacaggcttaattttgctgcaatgagaatgtggtttttggctaatccaccaaagtatgctacagtagatgttcaaaatgttgaggaattcacctggctaaattcaagttacagtccagttctgaagcaattgaattctcagtccatgatagattattacttcagatctcgtgctgattctgatccaaatgtgaagtttaggaatccaaagtacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctcttcttggatgatgatattgttngtgcaaaggatcttggcggcctttggtcacttgatcttaagggtaaggtgattggntgtggnntgaacctgtggagaaagctttcatcggtttgaccgctacctcacttctcaaatcctctgatctctaaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94356" stop="96000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94656" g_stop="95006" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95007" i_stop="95229" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="95700" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="822" r_length="471" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E429638" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94656" e_stop="95006"/>
          <exon e_start="95230" e_stop="95700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCGCATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAGGTAAACGAGCTATTGTCAGAAACTCATCTTGTATATTGAGGTTGCATCTGGCTCAGAAATTCACTTTATTCTTTCCAAGTCTTTTCCTATATGATTACATAGAAACATGCCCATCTGCATGTTTAAGTTTATAATATCTCAACCTTTATGTCTCTTCAGGGACATCCAATAAATTTGGAATATCTCAATCTTCATTTATAACTTTTTCTGTATATGGTGGCAGGATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTT-GTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGG-TGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTT</genome_strand>
        <mrna_strand>GAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAAATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCACATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAG...............................................................................................................................................................................................................................GATCCATCAAAGCACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCCACCAAAGTATGCTACAGTAGATGTTCAAAATGTTGAGGAATTCACCTGGCTAAATTCAAGTTACAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCCATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAGTACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTNGTGC-AAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTGATTGGNTGTGGNNTGAACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTC-ACTTCTCAAATCCTCTGATCTCTAAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708219" ref_strand="+" ref_description="SGN-E708219 [FA35AF11]">
      <seq>ccatatagggccaaagggaagcagattcaagatgattgtgctcctattgtaaagaagcttcgtgccatgcttcactcagcagaagagcagctccgtgtccacaagaagcaaacattgtatttaacacacttaactgctaagacacttccaaagggtcttcattgtcttcctttacgcctttcaacagagtatttcaagttaaattcttcccaacagcattttccgcatcaagagaatttagaaaatcccaagctataccactatgcactcttctcagacaacatattagccgctgctgtcgtcgtaaactcaactgtttcccatgcaaaggatccatcaaaacacgttttccatatagtgactgacaggcttaattttgctgcaatgagaatgtggtttttggctaatcaaccaaagtatgctacagtagatgttcaaagtgttgaggaattcacctggctaaattcaagttatagtccagttctgaagcaattgaattctcagtctatgatagattattacttcagatctcgtgctgattctgatccaaatgtgaagtttaggaatccaaaatacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctcttcttggatgatgatattgttgtgcaaaaggatcttggcggcctttggtcacttgatcttaagggtaaggtaattggtgtggttgagacctgtggagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctgaaaattttgatcctcgtgcttgtggttggggcatttggaatgaacatcattgatctaaatgagtggaggcgacaaaacatcacagaggtgtaccactcatggcaaaatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94385" stop="96102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94676" g_stop="95006" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95007" i_stop="95229" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="95802" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="904" r_length="574" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E708219" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94676" e_stop="95006"/>
          <exon e_start="95230" e_stop="95802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACATTGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCGCATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAGGTAAACGAGCTATTGTCAGAAACTCATCTTGTATATTGAGGTTGCATCTGGCTCAGAAATTCACTTTATTCTTTCCAAGTCTTTTCCTATATGATTACATAGAAACATGCCCATCTGCATGTTTAAGTTTATAATATCTCAACCTTTATGTCTCTTCAGGGACATCCAATAAATTTGGAATATCTCAATCTTCATTTATAACTTTTTCTGTATATGGTGGCAGGATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTT-GGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG</genome_strand>
        <mrna_strand>CCATATA-GGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTCCTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCGCATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAG...............................................................................................................................................................................................................................GATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619647" ref_strand="+" ref_description="SGN-E619647 [70340]">
      <seq>atttcaagttaaattcttcccaacagcattttccacatcaagagaatttagaaaatcccaagctataccactatgcactcttctcagacaacatattagccgctgctgtcgtcgtaaactcaactgtttcccatgcaaaggatccatcaaagcacgttttccatatagtgactgacaggcttaattttgctgcaatgagaatgtggtttttggctaatccaccaaagtatgctacagtagatgttcaaaatgttgaggaattcacctggctaaattcaagttacagtccagttctgaagcaattgaattctcagtccatgatagattattacttccgatctcgtgctgattctgatccaaatgtaaagtttaggaatccaaagtacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctcttcttggatgatgatattgttgtgcaaaaggatcttggcggcctttggtcacttgatcttaagggtaaggtgattggtgtggttgagacctgtggagaaagctttcatcggtttgaccgctacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94567" stop="95968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94867" g_stop="95006" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95007" i_stop="95229" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="95668" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="579" r_length="439" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E619647" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94867" e_stop="95006"/>
          <exon e_start="95230" e_stop="95668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCGCATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAGGTAAACGAGCTATTGTCAGAAACTCATCTTGTATATTGAGGTTGCATCTGGCTCAGAAATTCACTTTATTCTTTCCAAGTCTTTTCCTATATGATTACATAGAAACATGCCCATCTGCATGTTTAAGTTTATAATATCTCAACCTTTATGTCTCTTCAGGGACATCCAATAAATTTGGAATATCTCAATCTTCATTTATAACTTTTTCTGTATATGGTGGCAGGATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCA</genome_strand>
        <mrna_strand>ATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCACATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAG...............................................................................................................................................................................................................................GATCCATCAAAGCACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCCACCAAAGTATGCTACAGTAGATGTTCAAAATGTTGAGGAATTCACCTGGCTAAATTCAAGTTACAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCCATGATAGATTATTACTTCCGATCTCGTGCTGATTCTGATCCAAATGTAAAGTTTAGGAATCCAAAGTACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTGATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706779" ref_strand="+" ref_description="SGN-E706779 [FA30DF06]">
      <seq>gaatttagaaaatcccaagctataccactatgcactcttctcagacaacatattagccgctgctgtcgtcgtaaactcaactgtttcccatgcaaaggatccatcaaaacacgttttccatatagtgactgacaggcttaattttgctgcaatgagaatgtggtttttggctaatcaaccaaagtatgctacagtagatgttcaaagtgttgaggaattcacctggctaaattcaagttatagtccagttctgaagcaattgaattctcagtctatgatagattattacttcagatctcgtgctgattctgatccaaatgtgaagtttaggaatccaaaatacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctcttcttggatgatgatattgttgtgcaaaaggatcttggcggcctttggtcacttgatcttaagggtaaggtaattggtgtggttgagacctgtggagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctgaaaattttgatcctcgtgcttgtggttgggcatttggaatgaacatcattgatctaaatgagtggaggcgacaaaacatcacagaggtgtaccactcatggcaaaatcggaatcatgaaagacaactttggaagttggggaccctaccacctggtttgataaccttttggaagcgcacatatgcccttgaccgatcatggcatgtccttggacttggctacaatccaaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94610" stop="96734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94910" g_stop="95006" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95007" i_stop="95229" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="95802" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="670" r_length="573" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96434" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="793" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E706779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94910" e_stop="95006"/>
          <exon e_start="95230" e_stop="95802"/>
          <exon e_start="96312" e_stop="96434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAGGTAAACGAGCTATTGTCAGAAACTCATCTTGTATATTGAGGTTGCATCTGGCTCAGAAATTCACTTTATTCTTTCCAAGTCTTTTCCTATATGATTACATAGAAACATGCCCATCTGCATGTTTAAGTTTATAATATCTCAACCTTTATGTCTCTTCAGGGACATCCAATAAATTTGGAATATCTCAATCTTCATTTATAACTTTTTCTGTATATGGTGGCAGGATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGGGTATGAAATGAATTCTTTTCACTTATTTTTTTCAGGATTAGCATGTTCATTTAGCCATAATTTCACATGCTTTGCTTGGTCATGAAATTGATAGCCTGGAGGCTGGAGCAATATGGTCAATATTTCGTTAAGTATCATATCAGTTCCTGACCCTTGGGGCAATTTCTCTTTTTTCCAGTAAAAGGTCACTTTCACATTTAAGTTTTGTCCACACCCCAACCAAATCCCTGCCATGTCCTTTTTTTTTTTGGATCAAGTAAAAGATTTCATTAATAGTAACAAGGCCAACTTGGTCGTATACAAGAACCGCCATATGTCTTGTCCTGCCCTGTTCCTCCAATTAAACTCAACAATTGTATTGTTGTAGCCTTTGTAAGTTTTCTGGATGACTATGGCTTGTCATATCGATCTCGTTCTGTTACTAAAAATGTCAACATATACACTATACACCATCGATTTTCATGCATCATAAAGTTGTTCAAATAAGTCATGAAATTTTATCTGCACAGAATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTT</genome_strand>
        <mrna_strand>GAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAG...............................................................................................................................................................................................................................GATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317025" ref_strand="+" ref_description="SGN-E317025 [cTOA-27-K3]">
      <seq>tcaaaacacgttttccatatagtgactgacaggcttaattttgctgcaatgagaatgtggtttttggctaatcaaccaaagtatgctacagtagatgttcaaagtgttgaggaattcacctggctaaattcaagttatagtccagttctgaagcaattgaattctcagtctatgatagattattacttcagatctcgtgctgattctgatccaaatgtgaagtttaggaatccaaaatacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctcttcttggatgatgatattgttgtgcaaaaggatcttggcggcctttggtcacttgatcttaaaggtaacgtaattggcgtggttgagacctgtggagaaagctttcatcgggttgaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94936" stop="95962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95236" g_stop="95662" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E317025" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95236" e_stop="95662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCT</genome_strand>
        <mrna_strand>TCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAAGGTAACGTAATTGGCGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGGTTGACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603375" ref_strand="+" ref_description="SGN-E603375 [56463]">
      <seq>agaatgtggtttttggctaatccaccaaagtatgctacagtagatgttcaaaatgttgaggaattcacctggctaaattcaagttacagtccagttctgaagcaattgaattctcagtccatgatagattattacttcagatctcgtgctgattctgatccaaatgtgaagtttaggaatccaaagtacctttcaatcatgaatcacttacgcttttacttgccggagatcttcccaaagctggataaggttctgttcttggatgatgatattgttgtgcaaaaggatcttggcggcctttggtcacttgatcttaagggtaaggtgattggtgtggttgagacctgtggagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctaaaaatttcgatcctcgtgcttgtggttgggcatttggaatgaacatcattgatctaaatgagtggaggcggcaaaacatcacagaggtgtaccactcatggcaaaatcggaatcatgaaagacaactttggaagttggggaccctaccacctggtttgataaccttttggaagcgcacatatgccctcgaccgatcatggcatgtccttgggcttggctaccaatccaaatgttagccagaaggacattcaaccgagcagcagtcatacattacaatgcgaaacttgaaaccatggcttgaaataagcatacccaaagttcccgggactaactgcgtcaaaaatttgttgactatgatcaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="94987" stop="96858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95287" g_stop="95802" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96312" g_stop="96558" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="771" r_length="255" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E603375" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95287" e_stop="95802"/>
          <exon e_start="96312" e_stop="96558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGGGTATGAAATGAATTCTTTTCACTTATTTTTTTCAGGATTAGCATGTTCATTTAGCCATAATTTCACATGCTTTGCTTGGTCATGAAATTGATAGCCTGGAGGCTGGAGCAATATGGTCAATATTTCGTTAAGTATCATATCAGTTCCTGACCCTTGGGGCAATTTCTCTTTTTTCCAGTAAAAGGTCACTTTCACATTTAAGTTTTGTCCACACCCCAACCAAATCCCTGCCATGTCCTTTTTTTTTTTGGATCAAGTAAAAGATTTCATTAATAGTAACAAGGCCAACTTGGTCGTATACAAGAACCGCCATATGTCTTGTCCTGCCCTGTTCCTCCAATTAAACTCAACAATTGTATTGTTGTAGCCTTTGTAAGTTTTCTGGATGACTATGGCTTGTCATATCGATCTCGTTCTGTTACTAAAAATGTCAACATATACACTATACACCATCGATTTTCATGCATCATAAAGTTGTTCAAATAAGTCATGAAATTTTATCTGCACAGAATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTA-CAATCCAAATGTTAGCCAGAAGGACATCCAA-CGAGCAGCAGTCATACACTACAATG-GAAACTTGAAACCATGGCTTGAAATAAGCATACCC-AAGTT-CCGGGACT-ACTG-GTC-AAAATTTGTTGACTATGATCAGACAT</genome_strand>
        <mrna_strand>AGAATGTGGTTTTTGGCTAATCCACCAAAGTATGCTACAGTAGATGTTCAAAATGTTGAGGAATTCACCTGGCTAAATTCAAGTTACAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCCATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAGTACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTGTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTGATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTAAAAATTTCGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGGCAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTCGACCGATCATGGCATGTCCTTGGGCTTGGCTACCAATCCAAATGTTAGCCAGAAGGACATTCAACCGAGCAGCAGTCATACATTACAATGCGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAAGTTCCCGGGACTAACTGCGTCAAAAATTTGTTGACTATGATCAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429639" ref_strand="-" ref_description="SGN-E429639 [STM-52-K18]">
      <seq>taaggtgattggtgtggttgaaacctgtggagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctaaaaattttgatcctcgtgcttgtggttgggcatttggaatgaacatcattgatctaaatgagtggaggcggcaaaacatcacagaggtgtaccactcatggcaaaatcggaatcatgaaagacaactttggaagttggggaccctaccacctggtttgataaccttttggaagcgcacatatgccctcgaccgatcatggcatgtccttgggcttggctacaatccaaatgttagccagaaggacattcaacgagcagcagtcatacattacaatgggaacttgaaaccatggcttgaaataagcatacccaagttccgggactactggtcaaaatttgttgactatgatcaggcatttttgcgagagtgtaatatcaacaaattgggtggttcatgaagtgttctctgcacatatttctcctaattcctgaaatacagcgagcaagcatttgtttagtttacaggttcgttcttcctgaataagtgtatgattttgttcttgttctctaagtcagggagttattcaggtatatatacatatatgttgagtggagtattagagtgaacattctgtattacctttattcttgacatccattgttggatgacaacgcaagtccagatttgttgtaaatgattaaccatagctctccctttgaattttgctgtaaaaaaaaaaaaaaaaaagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="95307" stop="97172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95607" g_stop="95802" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96312" g_stop="96870" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="754" r_length="558" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="775"/>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E429639" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429639" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95607" e_stop="95802"/>
          <exon e_start="96312" e_stop="96870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGGGTATGAAATGAATTCTTTTCACTTATTTTTTTCAGGATTAGCATGTTCATTTAGCCATAATTTCACATGCTTTGCTTGGTCATGAAATTGATAGCCTGGAGGCTGGAGCAATATGGTCAATATTTCGTTAAGTATCATATCAGTTCCTGACCCTTGGGGCAATTTCTCTTTTTTCCAGTAAAAGGTCACTTTCACATTTAAGTTTTGTCCACACCCCAACCAAATCCCTGCCATGTCCTTTTTTTTTTTGGATCAAGTAAAAGATTTCATTAATAGTAACAAGGCCAACTTGGTCGTATACAAGAACCGCCATATGTCTTGTCCTGCCCTGTTCCTCCAATTAAACTCAACAATTGTATTGTTGTAGCCTTTGTAAGTTTTCTGGATGACTATGGCTTGTCATATCGATCTCGTTCTGTTACTAAAAATGTCAACATATACACTATACACCATCGATTTTCATGCATCATAAAGTTGTTCAAATAAGTCATGAAATTTTATCTGCACAGAATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACT</genome_strand>
        <mrna_strand>TAAGGTGATTGGTGTGGTTGAAACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTAAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGGCAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTCGACCGATCATGGCATGTCCTTGGGCTTGGCTACAATCCAAATGTTAGCCAGAAGGACATTCAACGAGCAGCAGTCATACATTACAATGGGAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGGCATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTTCGTTCTTCCTGAATAAGTGTATGA-TTTTGTTCTTGTTCTCTAAGTCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATTACCTTTATTCTTGACATCCATTGTTGGATGACAACGCAAGTCCAGATTTGTTGTAAATGATTAACCATAGCTCTCCCTTTGAATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540646" ref_strand="+" ref_description="SGN-E540646 [TUS-61-A11]">
      <seq>ggagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctgaaaattttgatcctcgtgcttgtggttgggcatttggaatgaacatcattgatctaaatgagtggaggcgacaaaacatcacagaggtgtaccactcatggcaaaatcggaatcatgaaagacaactttggaagttggggaccctaccacctggtttgataaccttttggaagcgcacatatgcccttgaccgatcatggcatgtccttggacttggctacaatccaaatgttagccagaaggacatccaacgagcagcagtcatacactacaatggaaacttgaaaccatggcttgaaataagcatacccaagttccgggactactggtcaaaatttgttgactatgatcagacatttttgcgagagtgtaatatcaacaaattgggtggttcatgaagtgttctctgcacatatttctcctaattcctgaaatacagcgagcaagcatttgtttagtttacaggtccgttcttcctgaataagtgtatgatttttgttcttgttctctaaatcagggagttattcaggtatatatacatatatgttgagtggagtattagagtgaacattctgtatgacctttattcttgacatccattattggatgacagcatgagtccagatttattgtaaatgattaaccatagctatccctttgaattttactgttgggtcttttttggattgtgtatatcaatgggtgctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="95335" stop="97214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95635" g_stop="95802" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96312" g_stop="96914" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="770" r_length="602" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E540646" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95635" e_stop="95802"/>
          <exon e_start="96312" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGGGTATGAAATGAATTCTTTTCACTTATTTTTTTCAGGATTAGCATGTTCATTTAGCCATAATTTCACATGCTTTGCTTGGTCATGAAATTGATAGCCTGGAGGCTGGAGCAATATGGTCAATATTTCGTTAAGTATCATATCAGTTCCTGACCCTTGGGGCAATTTCTCTTTTTTCCAGTAAAAGGTCACTTTCACATTTAAGTTTTGTCCACACCCCAACCAAATCCCTGCCATGTCCTTTTTTTTTTTGGATCAAGTAAAAGATTTCATTAATAGTAACAAGGCCAACTTGGTCGTATACAAGAACCGCCATATGTCTTGTCCTGCCCTGTTCCTCCAATTAAACTCAACAATTGTATTGTTGTAGCCTTTGTAAGTTTTCTGGATGACTATGGCTTGTCATATCGATCTCGTTCTGTTACTAAAAATGTCAACATATACACTATACACCATCGATTTTCATGCATCATAAAGTTGTTCAAATAAGTCATGAAATTTTATCTGCACAGAATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACTGTTGGTTCTTTTTTGGATTGTTGTATATCAATGGGTGCTACTCT</genome_strand>
        <mrna_strand>GGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACTGTTGGGTCTTTTTTGGATTG-TGTATATCAATGGGTGCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289649" ref_strand="+" ref_description="SGN-E289649 [cLET-4-P21]">
      <seq>gagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctgaaaattttgatcctcgtgcttgtggttgggcatttggaatgaacatcattgatctaaatgagtggaggcgacaaaacatcacagaggtgtaccactcatggcaaaatcggaatcatgaaagacaactttggaagttggggaccctaccacctggtttgataaccttttggaagcgcacatatgcccttgaccgatcatggcatgtccttggacttggctacaatccaaatgttagccagaaggacatccaacgagcagcagtcatacactacaatggaaacttgaaaccatggcttgaaataagcatacccaagttccgggactactggtcaaaatttgttgactatgatcagacatttttgcgagagtgtaatatcaacaaattgggtggttcatgaagtgttctctgcacatatttctcctaattcctgaaatacagcgagcaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="95336" stop="96951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95636" g_stop="95802" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96312" g_stop="96651" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="507" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E289649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95636" e_stop="95802"/>
          <exon e_start="96312" e_stop="96651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGGGTATGAAATGAATTCTTTTCACTTATTTTTTTCAGGATTAGCATGTTCATTTAGCCATAATTTCACATGCTTTGCTTGGTCATGAAATTGATAGCCTGGAGGCTGGAGCAATATGGTCAATATTTCGTTAAGTATCATATCAGTTCCTGACCCTTGGGGCAATTTCTCTTTTTTCCAGTAAAAGGTCACTTTCACATTTAAGTTTTGTCCACACCCCAACCAAATCCCTGCCATGTCCTTTTTTTTTTTGGATCAAGTAAAAGATTTCATTAATAGTAACAAGGCCAACTTGGTCGTATACAAGAACCGCCATATGTCTTGTCCTGCCCTGTTCCTCCAATTAAACTCAACAATTGTATTGTTGTAGCCTTTGTAAGTTTTCTGGATGACTATGGCTTGTCATATCGATCTCGTTCTGTTACTAAAAATGTCAACATATACACTATACACCATCGATTTTCATGCATCATAAAGTTGTTCAAATAAGTCATGAAATTTTATCTGCACAGAATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCAT</genome_strand>
        <mrna_strand>GAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235632" ref_strand="+" ref_description="SGN-E235632 [cLED-15-K9]">
      <seq>accctaccacctggtttgataaccttttggaagcgcacatatgcccttgaccgatcatggcatgtccttggacttggctacaatccaaatgttagccagaaggacatccaacgagcagcagtcatacactacaatggaaacttgaaaccatggcttgaaataagcatacccaagttccgggactactggtcaaaatttgttgactatgatcagacatttttgcgagagtgtaatatcaacaaattgggtggttcatgaagtgttctctgcacatatttctcctaattcctgaaatacagcgagcaagcatttgtttagtttacaggtccgttcttcctgaataagtgtatgatttttgttcttgttctctaaatcagggagttattcaggtatatatacatatatgttgagtggagtattagagtgaacattctgtatgacctttattcttgacatccattattggatgacagcatgagtccagatttattgtaaatgattaaccatagctatccctttgaattntactgttggttctttttttggattgttgtatatcaatgggtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="96042" stop="97211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96342" g_stop="96911" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E235632" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96342" e_stop="96911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACTGTTGGTTC-TTTTTTGGATTGTTGTATATCAATGGGTGCTAC</genome_strand>
        <mrna_strand>ACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTNTACTGTTGGTTCTTTTTTTGGATTGTTGTATATCAATGGGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302729" ref_strand="+" ref_description="SGN-E302729 [cLEY-1-C9]">
      <seq>acatatgcccttgaccgatcatggcatgtccttggacttggctacaatccaaatgttagccagaaggacatccaacgagcagcagtcatacactacaatggaaacttgaaaccatggcttgaaataagcatacccaagttccgggactactggtcaaaatttgttgactatgatcagacatttttgcgagagtgtaatatcaacaaattgggtggttcatgaagtgttctctgcacatatttctcctaattcctgaaatacagcgagcaagcatttgtttagtttacaggtccgttcttcctgaataagtgtatgatttttgttcttgttctctaaatcagggagttattcaggtatatatacatatatgttgagtggagtattagagtgaacattctgtatgacctttattcttgacatccattattggatgacagcatgagtccagatttattgtaaatgattaaccatagctatccctttgaattttactagtggttcttttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="96078" stop="97187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96378" g_stop="96887" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E302729" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96378" e_stop="96887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACTGTTGGTTCTTTTTTGGA</genome_strand>
        <mrna_strand>ACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACTAGTGGTTCTTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417363" ref_strand="+" ref_description="SGN-E417363 [STM-25-E24]">
      <seq>gcaatacccaacttttctttaaccctttattttgtattatctttccctctctctctgtgtagtgggtataagctttttcagtgagattgagtgaattcccatttgggttttgtataattcattcagtttactcacttgtacagtgaattttacgaaaagggtcgtcgccggaaatgggtatatccgccggagagtcgtcgtcgtattcagggaagctgaagaaagtagtaaaaaagattcttgttcagacttgtgggtcatttcgttgtggataccaaaaccctccttctgatgaacctgataacatcaacaacaacaatacctctgattttccatatccggcgaataatctcgaactgttgaatcatacttctgtaattaaaccctcgcgattagattctactactaacacaccttctaacaagaacttttgtccaatatgtctagattcgttgagctatagctgcgacagcagcccaggacaggctatattcacagcacaatgctctcatgcttttcacttcgcttgcatatcatccaacattcgccatggcaatgttacttgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="102890" stop="106173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103190" g_stop="103524" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103525" i_stop="104486" i_length="962">
            <donor d_prob="1.000" d_score="0.76"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104487" g_stop="104585" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="425" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104586" i_stop="105729" i_length="1144">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105730" g_stop="105873" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="569" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E417363" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103190" e_stop="103524"/>
          <exon e_start="104487" e_stop="104585"/>
          <exon e_start="105730" e_stop="105873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATACCCAACTTTTCTTTAACCCTTTATTTTGTATATCTTTTCCCCCCTCTCTCCATCTGTAGTGGGTATAAGCTTTTTCAGTGAGATTGAATGAATTCCCATTTGGGTTTTGTATAATACGTTCAGTTTATTCACTTGTACAGTGAGTTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGGCTGAAGAGAGTAGCAAAAAAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTGATGATGAACCTCACAACAACAACAACAACAACAACAATCCCTCTGTAAGTTTACTGAAATTCGTTTAGTTTTTTCTTTTTACTTTTTTGTTTCCCATCTGGTGTCGGTATCTCTAATGAGTTTTAAGCTAAATTTGGATTGAGGGAAGTCCCACATTTTGGCATTGAGGGTAGAATTGTTTTTAAATTCGAACTTGAGATCTCTGATTAACGAATAAGTAATACAATCCCATCACAGTTTTCCATCTGGTGTCGGGTAAAGTTTTACATTGAGGGTAAAATGTTACTCAAGACTCAAACTCGAAATCTGTAGTTAAGGATAAAGTAGTATTTTTCCATCACAATTTCACATCAGTGTTTGGTAAAGCCCCACATTGAGGGTAAAATGTTAGTTAGGACTCGAACTTGAGATGTCTAGTTAAAGATAGAGTAGTACCATCTCTCACCTGGTGTTTATTACCTGTAATGAGGCTCAGCTAAATCCGGATTGTGTCAAGTCCCATACTGAGGGTAAAATGTTACTCTCTCCGTCCTATTTTAAGTGACACTTTTCGAATTTTGAGATTCAAACAAGTTTATATTTGACCGTAAATTGTTCATAGATATTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTACAAATATATAGATTTCATTTCAACAAAATTGAAGATTCCGTGCGCATATTTTTGGTCAAACTTAAACTATTCGTGTCTCGATAAATGATAAATTTCACATAAATTGGGACTGAGGGAGTATATAAGATTCGGACTCGAGATGTTTAGTTAAAGATAAAGTAGTACCATCCCATTACAATTTGCCAATCGGTATTTGGTACTTGCATTAAGGCTCAGCTAAATCCGGATTGTTGAAAGGTTAAGTATGAAGTAGTACTTAGTACTTACAATCCCATCACAATTCTTGTTGGTGGAATTAGTTTAGTTTTGAGCTTTTTTCCCTAAAATTTCATGCATTTGATGATCTGTTATGTGCAGGAGTTTCCATATCCGGTGAATAATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCACGATTAGATTCTACTACTAACACACCTTCTAACAAGGTACCTTCTTCTCTGCATCTTCAATTTTTTGTCATTGTTTTGCTGTGAATTACAAATTGTTCTTGCTTTTGGATTGTGGTTTCAGTAAAATTAGCTGGTTTAAGCTAGCCTTGCTGTCCTTTTGTGATAAAGAATTGGACTTTGGACCTAACTCAACAATGCATTATCATATCCCTGATTAAATTTCTATGAAGTAAAGATTGTAACATGAGGTGAGGATTAACCATCTCATCTTTAAAGAACCGATATGGGAGCTCAACATTTCGTTTCATATCCCAGATAAATTTGGAAGTAAAGATTGTAGTTGGCTAGCATTCTCTTAGATTTCTTGAAATTCTTGTTTCCTTGATTAGTTTTAGCCTTATAAATGAATAAATGCTTAGTGTTCTCAATGAATTCCCAACCTGAGAGAATCAAAAGTTGTGAATGCTTATGCTGCATTGTGATAGGTAAAAGTTTTCTGCCCGCGGAATTTTCAGATCCAATCTTTACACTCCCATTTACCTTTCCCAGGTCAAAATTTTGGCAAGCCTCTATTGTTTCTTATTAACATAGTGCAGATATTATTAAGCGTAGTAATAAGCCAAAAAAAAGAAGAGCTAAACTATAGAAAATAAGAGACTGAATAACTCAACTTTTCATTGATTACATCCGTCAAGAAGGAATCTGTCGCGTCTCTGGTACAGTTCAGTATGATATTTTACTTCTAGATGTTTAACTCAACTACTCCCTTCTTGACAACTGGGAAAGAAAATATTAAATATGAAAGCAAACCTGGGGGTGGGGTGGGGGTGGGGGGAGGGGCACTCTTAAGAGTGTCTTGTGCTATGTTTTTTCCTTGTTTGATGAATGAGTAGTTAGTCTGTGCCATCTGATTAAACATTCTAAAAAGGATTCTTCTTGCAGGACAAAACACATTTAAGTCTTTTTCTTTAAGAGATTATATCTGGAATTTCCTTTTTCTTTTTTTTGTGTGTTTAAGAGCTGGTCTGTTCTTTTTTGGCATCTGTATGTCCAATGTTGCTTATGTACAAAGAACCTACAAAGTCCTGCATGAGAATGTTATTATGTATATTAGTCCCTTTCCGTTGGTTTTCCATTTGCAATTTAGAAAACTCATGCTTCTCTTTCTATTGTCTGGCAGAACTTTTGTCCAATATGTCTGGATTCATTGAGCTATAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCTCATGCTTTTCACTTCGCTTGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCT</genome_strand>
        <mrna_strand>GCAATACCCAACTTTTCTTTAACCCTTTATTTTGTAT-TATCTTTCCCTCTCTCT-C-TGTGTAGTGGGTATAAGCTTTTTCAGTGAGATTGAGTGAATTCCCATTTGGGTTTTGTATAATTCATTCAGTTTACTCACTTGTACAGTGAATTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATCCGCCGGAGAGTCGTCGTCGTATTCAGGGAAGCTGAAGAAAGTAGTAAAAAAGATTCTTGTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTTCTGATGAACCT------GATAACATCAACAACAACAATACCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCCATATCCGGCGAATAATCTCGAACTGTTGAATCATACTTCTGTAATTAAACCCTCGCGATTAGATTCTACTACTAACACACCTTCTAACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGTCCAATATGTCTAGATTCGTTGAGCTATAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAATGCTCTCATGCTTTTCACTTCGCTTGCATATCATCCAACATTCGCCATGGCAATGTTACTTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446025" ref_strand="+" ref_description="SGN-E446025 [cSTA-19-N23]">
      <seq>gcaatacccaacttttctttaaccctttattttgtatatctttccctctctctctgtgtagtgggtataagctttttcagtgagatagagcgaattgccatttgggttttgtgtaattgattcaatttactcacttgtacagtgaattttacgaaaagggtcgtcgccggaaatgggtatatccgccggagagtcgtcgtcgtattcagggaagctgaagaaagtagtaaaaaagattcttgttcagacttgtgggtgatttcgttgtggataccaaaaccctccttctgatgaacctgataacatcaacaacaacaatacctctgattttccatatccggcgaataatctcgaactgttgaatcatacttctgtaattaaaccctcgcgattagattctactactaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="102890" stop="104874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103190" g_stop="103524" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103525" i_stop="104486" i_length="962">
            <donor d_prob="1.000" d_score="0.76"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104487" g_stop="104574" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="413" r_length="88" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E446025" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103190" e_stop="103524"/>
          <exon e_start="104487" e_stop="104574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATACCCAACTTTTCTTTAACCCTTTATTTTGTATATCTTTTCCCCCCTCTCTCCATCTGTAGTGGGTATAAGCTTTTTCAGTGAGATTGAATGAATTCCCATTTGGGTTTTGTATAATACGTTCAGTTTATTCACTTGTACAGTGAGTTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGGCTGAAGAGAGTAGCAAAAAAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTGATGATGAACCTCACAACAACAACAACAACAACAACAATCCCTCTGTAAGTTTACTGAAATTCGTTTAGTTTTTTCTTTTTACTTTTTTGTTTCCCATCTGGTGTCGGTATCTCTAATGAGTTTTAAGCTAAATTTGGATTGAGGGAAGTCCCACATTTTGGCATTGAGGGTAGAATTGTTTTTAAATTCGAACTTGAGATCTCTGATTAACGAATAAGTAATACAATCCCATCACAGTTTTCCATCTGGTGTCGGGTAAAGTTTTACATTGAGGGTAAAATGTTACTCAAGACTCAAACTCGAAATCTGTAGTTAAGGATAAAGTAGTATTTTTCCATCACAATTTCACATCAGTGTTTGGTAAAGCCCCACATTGAGGGTAAAATGTTAGTTAGGACTCGAACTTGAGATGTCTAGTTAAAGATAGAGTAGTACCATCTCTCACCTGGTGTTTATTACCTGTAATGAGGCTCAGCTAAATCCGGATTGTGTCAAGTCCCATACTGAGGGTAAAATGTTACTCTCTCCGTCCTATTTTAAGTGACACTTTTCGAATTTTGAGATTCAAACAAGTTTATATTTGACCGTAAATTGTTCATAGATATTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTACAAATATATAGATTTCATTTCAACAAAATTGAAGATTCCGTGCGCATATTTTTGGTCAAACTTAAACTATTCGTGTCTCGATAAATGATAAATTTCACATAAATTGGGACTGAGGGAGTATATAAGATTCGGACTCGAGATGTTTAGTTAAAGATAAAGTAGTACCATCCCATTACAATTTGCCAATCGGTATTTGGTACTTGCATTAAGGCTCAGCTAAATCCGGATTGTTGAAAGGTTAAGTATGAAGTAGTACTTAGTACTTACAATCCCATCACAATTCTTGTTGGTGGAATTAGTTTAGTTTTGAGCTTTTTTCCCTAAAATTTCATGCATTTGATGATCTGTTATGTGCAGGAGTTTCCATATCCGGTGAATAATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCACGATTAGATTCTACTACTAACACAC</genome_strand>
        <mrna_strand>GCAATACCCAACTTTTCTTTAACCCTTTATTTTGTATATC-TTT-CCCTCTCTCT-C-TGTGTAGTGGGTATAAGCTTTTTCAGTGAGATAGAGCGAATTGCCATTTGGGTTTTGTGTAATTGATTCAATTTACTCACTTGTACAGTGAATTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATCCGCCGGAGAGTCGTCGTCGTATTCAGGGAAGCTGAAGAAAGTAGTAAAAAAGATTCTTGTTCAGACTTGTGGGTGATTTCGTTGTGGATACCAAAACCCTCCTTCTGATGAACCT------GATAACATCAACAACAACAATACCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCCATATCCGGCGAATAATCTCGAACTGTTGAATCATACTTCTGTAATTAAACCCTCGCGATTAGATTCTACTACTAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471094" ref_strand="+" ref_description="SGN-E471094 [cSTB-22-M2]">
      <seq>tcagtttactcacttgtacagtgaattttacgaaaagggtcgtcgccggaaatgggtatgttcgctggagagtcgttgtcgtattcagggaagctgaagaaagtagtaaaaaagattcttgttcagacttgtgggtcatttcgttgtggataccaaaaccctccttctgatgaacctgataacaacaacaacaacaacaacaacatcaacacctctgactttccatatccagcgaataatctcgaattgttgaatcatacttctgtaattaaaccctcacggttagattctactactaacacaccttctaacaagaacttttgtccaatatgtctggattcattgagctacagctgcgacagcagcccaggacaggctatattcacagcacagtgctctcatgcttttcacttcgcttgcatatcatccaacatccgccatggcaatgttacttgccctgtttgccgtgcacattggacccagctacctcggacattgaagatgcattattctcctcacagcaatcaggctgatcccattctccagattcttgatgaatcaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="103015" stop="106280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103315" g_stop="103524" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103525" i_stop="103676" i_length="152">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103677" g_stop="103684" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="216" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103685" i_stop="104486" i_length="802">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104487" g_stop="104585" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="315" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104586" i_stop="105729" i_length="1144">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105730" g_stop="105978" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="564" r_length="249" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E471094" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103315" e_stop="103524"/>
          <exon e_start="103677" e_stop="103684"/>
          <exon e_start="104487" e_stop="104585"/>
          <exon e_start="105730" e_stop="105978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTATTCACTTGTACAGTGAGTTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGGCTGAAGAGAGTAGCAAAAAAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTGATGATGAACCTCACAACAACAACAACAACAACAACAATCCCTCTGTAAGTTTACTGAAATTCGTTTAGTTTTTTCTTTTTACTTTTTTGTTTCCCATCTGGTGTCGGTATCTCTAATGAGTTTTAAGCTAAATTTGGATTGAGGGAAGTCCCACATTTTGGCATTGAGGGTAGAATTGTTTTTAAATTCGAACTTGAGATCTCTGATTAACGAATAAGTAATACAATCCCATCACAGTTTTCCATCTGGTGTCGGGTAAAGTTTTACATTGAGGGTAAAATGTTACTCAAGACTCAAACTCGAAATCTGTAGTTAAGGATAAAGTAGTATTTTTCCATCACAATTTCACATCAGTGTTTGGTAAAGCCCCACATTGAGGGTAAAATGTTAGTTAGGACTCGAACTTGAGATGTCTAGTTAAAGATAGAGTAGTACCATCTCTCACCTGGTGTTTATTACCTGTAATGAGGCTCAGCTAAATCCGGATTGTGTCAAGTCCCATACTGAGGGTAAAATGTTACTCTCTCCGTCCTATTTTAAGTGACACTTTTCGAATTTTGAGATTCAAACAAGTTTATATTTGACCGTAAATTGTTCATAGATATTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTACAAATATATAGATTTCATTTCAACAAAATTGAAGATTCCGTGCGCATATTTTTGGTCAAACTTAAACTATTCGTGTCTCGATAAATGATAAATTTCACATAAATTGGGACTGAGGGAGTATATAAGATTCGGACTCGAGATGTTTAGTTAAAGATAAAGTAGTACCATCCCATTACAATTTGCCAATCGGTATTTGGTACTTGCATTAAGGCTCAGCTAAATCCGGATTGTTGAAAGGTTAAGTATGAAGTAGTACTTAGTACTTACAATCCCATCACAATTCTTGTTGGTGGAATTAGTTTAGTTTTGAGCTTTTTTCCCTAAAATTTCATGCATTTGATGATCTGTTATGTGCAGGAGTTTCCATATCCGGTGAATAATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCACGATTAGATTCTACTACTAACACACCTTCTAACAAGGTACCTTCTTCTCTGCATCTTCAATTTTTTGTCATTGTTTTGCTGTGAATTACAAATTGTTCTTGCTTTTGGATTGTGGTTTCAGTAAAATTAGCTGGTTTAAGCTAGCCTTGCTGTCCTTTTGTGATAAAGAATTGGACTTTGGACCTAACTCAACAATGCATTATCATATCCCTGATTAAATTTCTATGAAGTAAAGATTGTAACATGAGGTGAGGATTAACCATCTCATCTTTAAAGAACCGATATGGGAGCTCAACATTTCGTTTCATATCCCAGATAAATTTGGAAGTAAAGATTGTAGTTGGCTAGCATTCTCTTAGATTTCTTGAAATTCTTGTTTCCTTGATTAGTTTTAGCCTTATAAATGAATAAATGCTTAGTGTTCTCAATGAATTCCCAACCTGAGAGAATCAAAAGTTGTGAATGCTTATGCTGCATTGTGATAGGTAAAAGTTTTCTGCCCGCGGAATTTTCAGATCCAATCTTTACACTCCCATTTACCTTTCCCAGGTCAAAATTTTGGCAAGCCTCTATTGTTTCTTATTAACATAGTGCAGATATTATTAAGCGTAGTAATAAGCCAAAAAAAAGAAGAGCTAAACTATAGAAAATAAGAGACTGAATAACTCAACTTTTCATTGATTACATCCGTCAAGAAGGAATCTGTCGCGTCTCTGGTACAGTTCAGTATGATATTTTACTTCTAGATGTTTAACTCAACTACTCCCTTCTTGACAACTGGGAAAGAAAATATTAAATATGAAAGCAAACCTGGGGGTGGGGTGGGGGTGGGGGGAGGGGCACTCTTAAGAGTGTCTTGTGCTATGTTTTTTCCTTGTTTGATGAATGAGTAGTTAGTCTGTGCCATCTGATTAAACATTCTAAAAAGGATTCTTCTTGCAGGACAAAACACATTTAAGTCTTTTTCTTTAAGAGATTATATCTGGAATTTCCTTTTTCTTTTTTTTGTGTGTTTAAGAGCTGGTCTGTTCTTTTTTGGCATCTGTATGTCCAATGTTGCTTATGTACAAAGAACCTACAAAGTCCTGCATGAGAATGTTATTATGTATATTAGTCCCTTTCCGTTGGTTTTCCATTTGCAATTTAGAAAACTCATGCTTCTCTTTCTATTGTCTGGCAGAACTTTTGTCCAATATGTCTGGATTCATTGAGCTATAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCTCATGCTTTTCACTTCGCTTGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCTGTTTGCCGTGCACATTGGACCCAGCTACCTCGGACATTGAAGATGCATTATTCTCCTCACAGCAATCGCGCTGATCCCATTCTCCAGATTCTTGATGAATCAATT</genome_strand>
        <mrna_strand>TCAGTTTACTCACTTGTACAGTGAATTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATGTTCGCTGGAGAGTCGTTGTCGTATTCAGGGAAGCTGAAGAAAGTAGTAAAAAAGATTCTTGTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTTCTGATGAACCTGATAACAACAACAACAACAACAACAA--CATCA........................................................................................................................................................ACACCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTCCATATCCAGCGAATAATCTCGAATTGTTGAATCATACTTCTGTAATTAAACCCTCACGGTTAGATTCTACTACTAACACACCTTCTAACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGTCCAATATGTCTGGATTCATTGAGCTACAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCTCATGCTTTTCACTTCGCTTGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCTGTTTGCCGTGCACATTGGACCCAGCTACCTCGGACATTGAAGATGCATTATTCTCCTCACAGCAATCAGGCTGATCCCATTCTCCAGATTCTTGATGAATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701556" ref_strand="+" ref_description="SGN-E701556 [FA16BC04]">
      <seq>atcaattgctacttctcgggtacatagacgttcctttttacgttctgctcgctatgatgatgatgatccagtcgagcctgaccgtacatcaaatattcaccgtttgcatctatctttatcacctgttcctcacagtacttctgtgtttgatccgtgctcaaatccaaagtctagctttagttcatgccattatcctcagcattgtttagaatcttcacaatcagcagcacagcattttgtagaaactgggcagtctcctctggtttgcagctcctctagtagtgcttatctttgcttaaaattggcacatcagccagccactgacttagtcttagtggcaagccccaacggacctcacctgaggcttatgaaacaagccatggcatttgtggtattttcattgcggcctatagaccgtttggctattgttacctactcttctgccgcagcacgcatcttccctctcaagtgtatgacctcttacgggaagcgcacagcacttcaagttattgacagactgttttatatgggccaagctgatccagtagaaggactcaagaaaggagtaaagatactaagagaacgcagccaccaaaatactcattcttttattctacatctttctgacaatccaacaagatctttccatgggtttcacttggaacttcccattacaatccataagtttcatgtgggatttggatttggtacttcaaatggattcgtcatgcacgagtttgagagatttcttgctaaaatactatgtggtgcagttagagatattgcattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="105672" stop="107065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105972" g_stop="106765" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E701556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105972" e_stop="106765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCTACTTCTCGGGTACATAGACGTTCCTTTTTACGTTCTGCTCGCTATGATGATGATGATCCAGTCGAGCCTGACCGTACATCAAATATTCACCGTTTGCATCTATCTTTATCACCTGTTCCTCACAGTACTTCTGTGTTTGATCCGTGCTCAAATCCAAAGTCTAGCTTTAGTTCATGCCATTATCCTCAGCATTGTTTAGAATCTTCACAATCAGCAGCACAGCATTTTGTAGAAACTGGGCAGTCTCCTCTGGTTTGCAGCTCCTCTAGTAGTGCTTATCTTTGCTTAAAATTGGCACATCAGCCAGCCACTGACTTAGTCTTAGTGGCAAGCCCCAACGGACCTCACCTGAGGCTTATGAAACAAGCCATGGCATTTGTGGTATTTTCATTGCGGCCTATAGACCGTTTGGCTATTGTTACCTACTCTTCTGCCGCAGCACGCATCTTCCCTCTCAAGTGTATGACCTCTTACGGGAAGCGCACAGCACTTCAAGTTATTGACAGACTGTTTTATATGGGCCAAGCTGATCCAGTAGAAGGACTCAAGAAAGGAGTAAAGATACTAAGAGAACGCAGCCACCAAAATACTCATTCTTTTATTCTACATCTTTCTGACAATCCAACAAGATCTTTCCATGGGTTTCACTTGGAACTTCCCATTACAATCCATAAGTTTCATGTGGGATTTGGATTTGGTACTTCAAATGGATTCGTCATGCACGAGTTTGAGAGATTTCTTGCTAAAATACTATGTGGTGCAGTTAGAGATATTGCATTGATGA</genome_strand>
        <mrna_strand>ATCAATTGCTACTTCTCGGGTACATAGACGTTCCTTTTTACGTTCTGCTCGCTATGATGATGATGATCCAGTCGAGCCTGACCGTACATCAAATATTCACCGTTTGCATCTATCTTTATCACCTGTTCCTCACAGTACTTCTGTGTTTGATCCGTGCTCAAATCCAAAGTCTAGCTTTAGTTCATGCCATTATCCTCAGCATTGTTTAGAATCTTCACAATCAGCAGCACAGCATTTTGTAGAAACTGGGCAGTCTCCTCTGGTTTGCAGCTCCTCTAGTAGTGCTTATCTTTGCTTAAAATTGGCACATCAGCCAGCCACTGACTTAGTCTTAGTGGCAAGCCCCAACGGACCTCACCTGAGGCTTATGAAACAAGCCATGGCATTTGTGGTATTTTCATTGCGGCCTATAGACCGTTTGGCTATTGTTACCTACTCTTCTGCCGCAGCACGCATCTTCCCTCTCAAGTGTATGACCTCTTACGGGAAGCGCACAGCACTTCAAGTTATTGACAGACTGTTTTATATGGGCCAAGCTGATCCAGTAGAAGGACTCAAGAAAGGAGTAAAGATACTAAGAGAACGCAGCCACCAAAATACTCATTCTTTTATTCTACATCTTTCTGACAATCCAACAAGATCTTTCCATGGGTTTCACTTGGAACTTCCCATTACAATCCATAAGTTTCATGTGGGATTTGGATTTGGTACTTCAAATGGATTCGTCATGCACGAGTTTGAGAGATTTCTTGCTAAAATACTATGTGGTGCAGTTAGAGATATTGCATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417364" ref_strand="+" ref_description="SGN-E417364 [STM-25-E24]">
      <seq>aatacttttttagagtaaaaaattagtctatcactatgaatcctcacaatgttggggaaagtaccttgtaaaacattaaacacttcataacagttcaatcaatcatacgagattctttagtacaaaaattgggaacacagatatacaagaaactgtcttcatgtatttcaagatcacacacctataatgcagattctaaaaaatgtttgttcaattaatagatcagcctcatgggatcaaggacttcagggacatgagcatcatgtccgatagccatgtaaacgcttagcccatcgtctagccatgaatggatcatgatattcccagccctcaacgctgctacttcttccaccagtgttctcaacaatgtcaatagtatccatcagttctttcctgtcaccaactccgactacaacttcacctgttttaacagaatcatccatcatgcaatcaatgtaggtatataccacgcgaactttgtccaactcttccaaaagcaatggaattctcctctcctcaccccctcgcaattctccaaccctcacaatccttgtgtcctctccaatcatcaatgcaatatctctaactgcaccacatagtattttagcaagaaatctctcaaactcgtgcatgacgaatccatttgaagtgccatatccaaatcccacatgaaacttatggattgtaatggggaagtctaagtgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="107564" stop="106322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107264" g_stop="106622" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="709" r_length="644" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E417364" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107264" e_stop="106622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAAATATTATAAGCACTTCATAACAGTTCAATCAATCATATTAGATTCTTTAATACAAAAATTGGGAACACAGATATACAAGAAACTATCTTCATGTATTTCACAAGATCACACACCTATAATGCAGAATCTAAAAAATGTTTGTTCAATTAATAGATCAG-C-CA--GCATCATGG-GATCAAGGACATGAGCATCATATCCGATAGCCATGTAAACGCTTAGCCCATCGTCTAGCCATGAATGGATCATGGTATTCCCAGCCCTCAACGCTACTACTTCTTCCACCAGTGTTCTCAACAATGTCAATAGTATCCGTCAGTTCTTTCCTGTCACCAACTCCGACTACAACTTCACCTGTTTTAACAGAATCATCCATCATGCAATCAATGTAGGTATATACCACGCGAACTTTGTCCATATCTTCCAAAAGCAATGGAATTCTCCTCTCCTCACCCCCTCGCAATTCTCCAAGCCTCACGATCCTTGTGTCCTCTCCAATCATCAATGCAATATCTCTAACTGCACCACATAGTATTTTAGCAAGAAATCTCTCAAACTCGTGCATGACGAATCCATTTGAAGTACCAAATCCAAATCCCACATGAAACTTATGGATTGTAATGGGAAGTTCCAAGTGAAACC</genome_strand>
        <mrna_strand>TTGTAAAACATTA-AA-CACTTCATAACAGTTCAATCAATCATACGAGATTCTTTAGTACAAAAATTGGGAACACAGATATACAAGAAACTGTCTTCATGTATTT--CAAGATCACACACCTATAATGCAGATTCTAAAAAATGTTTGTTCAATTAATAGATCAGCCTCATGGGATCAAGGACTTCAGGGACATGAGCATCATGTCCGATAGCCATGTAAACGCTTAGCCCATCGTCTAGCCATGAATGGATCATGATATTCCCAGCCCTCAACGCTGCTACTTCTTCCACCAGTGTTCTCAACAATGTCAATAGTATCCATCAGTTCTTTCCTGTCACCAACTCCGACTACAACTTCACCTGTTTTAACAGAATCATCCATCATGCAATCAATGTAGGTATATACCACGCGAACTTTGTCCAACTCTTCCAAAAGCAATGGAATTCTCCTCTCCTCACCCCCTCGCAATTCTCCAACCCTCACAATCCTTGTGTCCTCTCCAATCATCAATGCAATATCTCTAACTGCACCACATAGTATTTTAGCAAGAAATCTCTCAAACTCGTGCATGACGAATCCATTTGAAGTGCCATATCCAAATCCCACATGAAACTTATGGATTGTAATGGGGAAGTCTAAGTGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608751" ref_strand="+" ref_description="SGN-E608751 [24744]">
      <seq>ttgactttggggttggcgaaaaccccaaaattttctacttaccctttgaatctgcattcaattctatgaaaattgcttaatcgatacagtaaaacttgttgaaattcgattacagaagcaaaaggtgttgattcaatgtttcccagattgattcaatcgcatgaagatgaatttattcatgggtgtgatgttaatgtcgggattcatcatcataatagggttaatggagacccttgtcttgtgttaacttcagatcccaaacctcgtcttcgatggactgctgatcttcatgaacgattcattgatgctgttactcaacttggcggacccagtaaagcaactccaaaggcaataatgcggacaatgggtgttaagggactgactctcttccacctaaagagccaccttcagaaataccgactaggtaagcaatctcagaaagatcttgatgaagcttcaaaagatggtaggtgtagttgacccccattttcctataactggaaacgtggttactcctgtagttccacaagtctcttggcagttgacatataacctttaccatttcaaaacaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="109529" stop="114367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109829" g_stop="110164" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110165" i_stop="113640" i_length="3476">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113641" g_stop="113717" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="411" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113718" i_stop="113903" i_length="186">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113904" g_stop="114069" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="578" r_length="167" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E608751" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109829" e_stop="110164"/>
          <exon e_start="113641" e_stop="113717"/>
          <exon e_start="113904" e_stop="114069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTTTGGGGTTGGCGAAAACCCCAAAATTTTGCTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATTGATACAGTAAAACTTGTTGAAAATTCGACTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTAGTTAGTATTTTCTGTTTTCTTATTTGCCCTTCTTATCAAGTTTCTTTTTTTTTGTTGTTGTTAAACTTTTCAAGAATGTTGAGGATTTTTATGATGTTGATGTATTGTGCAAATGTTTAGCATTTAGATGCTTGTTTTGTTTCTTGTTTGGCTGAGAAAATGAGGTAGTGCACTATTGGTTTGCCAACTATTGTGTAGATTTTGGAAGGTTAGCATTTGCATCTATGGAGGCTTGAGACGTTTTGAGCTCACACCTTTTTTGCTCTCCCTTGGTACTTCGAACACATAAACTTAAAGTTGGTGATGAAAAGAATGCTTATTGTCTGAGTGACCCCGAGGCTTGAGACTTGAAACTTATTCTTACAGCTGAGATGAGGAGTGAAACATTTTGAGCTCCCACCTTTTTTTTTTCCATTGGTGACTCAAACCCACAAACTTAAGGTTGGAGATGCAGAAAATGTTTAACGTCTGAGCAACCCCGAGGCTTTTGAGACCTGAAAGTTATTCTAACAGCTAAGATGAGGCTTTAGACTTTTTGAGCTACCACCTTTTTTGCTCTCTTAGTGTCTCAAACCCACAAACCTAAGGTTGAAGGTGGAGAGAGCGTTTACTGTTTGAGCAACCTCGAGACTTTTGAGACTTGGAAGTTATTAAATATTAAGCTAAGATGAGTTTTGACTGGAATGAAGCGTTTAGCAAGACTCGGAAAAAAGTTAAGTAAAACTCCAATCTCAATTACCATAGTTAAATTGCAAAAGCATTCCAGTCAGGAGGCTGCTTTGAAGTGAAAAAAGAAGAACAATATTGGGGGTGTGTAAAGGGAAAACTACTGGGCTTGCAAAGAATCTCTCTTCTTTTTCATTTCCCCTTTTTTCTGTTTACCCCTTCTTTTGGTTTTTTAACTTTTTAGAATGTTGAGGATCTAGAAGTTATGTATTGTGTTACATTTAGCATTAGTACTTGTTCTTTTGTTTTTTGTATTGGCTGAGAAAATGAGATAGTTTACTATTGGTTCGCCAACTGTTGTGTAGATTTCGAATGGCTAGCATTTTCATATATGGAGGGTAAAGATGAGTCAGATATAACTTACGGCTAAGATGAATTTTAACCAGAACAAAACCTTTTAGGTCCAATCTATTCATTAGATCTATCCACTTCCATTCTCCTCAAATTTCACACTTAGCCCCATTACCATAGTTAAACTACTACGGGTTTGAATCCTGCAGAAGGTTAGAGGGATGGGCCCATTATCCAATGAGTTTCGAGCTGTGCGCCAAGGGCACTTGGGATTTCTTGGTTATTAGAAAATACCATAGTTAAATTGCTGAAACATTTCCATTTAGCCTACCAAAACCTTACCTAATGGACTAATGGGTGGTATGTGCAAGTTGGAAATTAAGAGGCTTCACTAAAAATAATTTACAAATTGAAATCAGTCTAGTGTCATACCCAAGAGCCTTTATCCTGGAGAAAAAGAAGAACTACGCTAGGGTGTGAAAAAGAAAACTATTGAACTTGCAAAAAATCGTTAAAAATGTTGTGAGAATTAAAAAGATGGAGACATTAGCAACTCAAGATATATTCAGTTTAATAGTCCTTATGTGGGTGAGATTGGAAATTGGGAATGAAACCATCTAAACCCATAACCCAAAAAGTTAATTTTTTAGGGAAGATTCATGATTAGTGTTAACTGATAAGCTTGGGAAAGTCTGGAAAAATGGGTTCGTATCGTGGAAGAGAAGGTAATGGCTTAAGTTGGAGAAGAGTTGAAAAAAGCTGAATTTGGTGCTAGTTTGTTACCATTGGTACCAACTGAACTGTTGCTGGTTTACTGCAATTCTTTTAAGTCTCTGCCTTTGCCCTTTTTTTCCCTGCCTTGAGCAAGCAACTATATTATGCTGGCAGCAGAACATAATTTTCCAGTACCAGTATGCCATCAAGACAAGATAGGCAGGTGCTGTCTGACATGTGTATATCAGGTAAAAGGAAGATATTATCAGGGAAAGAACTTAGTATATGTAGAGACCTTCCTATTCATTCAAATTGGTGTGATAGCATGACTACTTTCCCTTGTTAGTTGTGTTTGGCTAAAACATAACCCTTGATCTCACTCTGGATGACAAGTGCTTAGTTTTATTAATCATATATTATTATAAGAGGGAACCAAAAAAGTTAAAAGTTGAATTACGATTTTACCCTTATTATAAATTAAAATATTTAACTATTTAATTTAAATATTAAATTTTATTATTTTAATCAAAATGTTAATGACTTTTCCACTTCTTTAGAATAATTTTTAATTAAAATATCTAATTTAATTTATTTTCTTGAAATTATTTAAAATATTATTTTTTCGTTTAATATTTATTTCGGGATTCAATGAATTTTGATTATCAAAGTTGAATTACTTTTTTGCCTTTTAATTAATAAAAATTTTAATAAATAAAAATAACTAATCTAATTAGTAGTAGTATTTAAATTGTTACGCAAGCTAATTAAATAGGAGTAATATTTTAATTATCACTCAAATTACAACAACCTATATTCAATGTTTTGGAATTGCTAGCTTTTCATCTTCCTAAAATTATCCTATATTCAATATTTTGATTTTGTTTCAACTTCCTGAAATTATGAAACATTAATGTGAAGTTCATGAATCTCTCAAGCCCTTAGTATACTTTGTCTTTTACTATATAATTATATATGCATTTATTCCATTAATTTAAATTTGTTATTTCTTTTAAATTTCATCCGTTAGAAAACTTTTCATGTACTCTATTAAGTTTTATCACATAACATTTTAAAAAAATATATAGGATGTTGTTCCAATTGATTTGCACAGTAATTTTGATAAGTGTAGAAAAAAATGTTATATATGACATTATATACTTGAGGTTTAATAAAAAATTTGAAGTTATTAGTTTAATGTGGTGTTGCAATGCATGAAAAATATTAGTTTTAATAGTTTGTCATGTTACATTCGATATATATATATACTATTTTACTAATTATTTATGTTAAATTCAAAAAAGAAATGACTCGGAAGTTTAAATCCGACAAAAAATAATCTTCCTTTCAAATTCATATAACTCATATTATTTTCTTAAAAAAATTACTTAACGTGAAATATACGTGCGTTGCACGTATTAGAGAACTAGTTAGCCTAAATTAGTGCCACCATTACCTCTTTAAAAAAGGTCCCCTATAATTAATTCTTGTTAGCCACATCATATAGGGATCATCAAATCAATAGCAATGTTTACTTGAATACAAGGTTCCTCTCTTTTTTTGTTGAAGTAAATGCAAGATATCTTGCTGGATTATTTGTATTACGTGTCGGTGTTTGGGGGGGGGGGGGATTTGTATTACTTGTCGGTGTTAATATAATGGTTGCATAGTTGATATCTGCATTAAAGTCTTTAGTTTGGCTGGAACACCTGCTTTTCTCATGGATATGCTTTCAATATCACTTGCAGAAGCTACTCCAAAGGCAATAATGCGGACAATGGGAGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAGGTCTGTCAGAATACATTAGATTTTTTTCTTATTTGTCTCACAAGCCCACCGCACATCCTTCACTTAAGTCCCAGATGTAAAGAGGAGGAGGTGGGCGGTGGAGCAAAACATGTATGTTTTCTAATGAGCTTAAAATCAAATGTTTTTTGATCAATTTTTAACTATGATGTTGTTTGTTCACTGCAGAAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAAGCTTCAAAAGATGGTAGGTATAGTTGACCCATGTTTTCCTATAACTGGAAACGTGGTTGCTCCTGTAGTTTCACAAGTCTCTTGGCAGTTGGCATATAACCTTCACCATTTCAAAA-AGAAAAAG</genome_strand>
        <mrna_strand>TTGACTTTGGGGTTGGCGAAAACCCCAAAATTTT-CTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATCGATACAGTAAAACTTGTTG-AAATTCGATTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCATGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTCCAAAGGCAATAATGCGGACAATGGGTGTTAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAG..........................................................................................................................................................................................AAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAAGCTTCAAAAGATGGTAGGTGTAGTTGACCCCCATTTTCCTATAACTGGAAACGTGGTTACTCCTGTAGTTCCACAAGTCTCTTGGCAGTTGACATATAACCTTTACCATTTCAAAACAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473884" ref_strand="+" ref_description="SGN-E473884 [cSTB-34-G3]">
      <seq>ggttggcgaaaaccccaaaattttctacttaccctttgaatctgcattcaattctatgaaaattgcttaatcgatacagtaaaacttgttgaaattcggttacagaagcaaaaggacttgattcaatgtttcccagattgattcaatcgcaagaagatgaatttattcatgggtgtgatgttaatgtcgggattcatcatcataatagggttaatggagacccttgtcttgtgttaacttcagatcccaaacctcgtcttcgatggactgctgatcttcatgaacgattcattgatgctgttactcaacttggcggacccagtaaagctactccaaaggcaataatgcggacaatgggtgtcaagggactgactctcttccacctaaagagccaccttcagaaataccgactaggtaagcaatctcagaaagatcttgatgaggcttcaaaagatggacttacagctacgtattcattagaaagcccttgttctggtggtactcctcagcagttgcctgcatcagacttgaatgaaggttttgaagtcaaggaggcattgagagctcaaatggaagtgcaaagtaaattgcaccttcaagttgaagccgagaagcacttgcaaattcggcaggatgctgaacaaagatatattaccatgctggagaaggcctgtaaaatgctcgctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="109539" stop="115325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109839" g_stop="110164" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110165" i_stop="113640" i_length="3476">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113641" g_stop="113717" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="401" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113718" i_stop="113903" i_length="186">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113904" g_stop="113958" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="456" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113959" i_stop="114529" i_length="571">
            <donor d_prob="0.645" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114530" g_stop="114608" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="535" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114609" i_stop="114722" i_length="114">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114723" g_stop="114792" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="605" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114941" g_stop="115025" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="690" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E473884" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109839" e_stop="110164"/>
          <exon e_start="113641" e_stop="113717"/>
          <exon e_start="113904" e_stop="113958"/>
          <exon e_start="114530" e_stop="114608"/>
          <exon e_start="114723" e_stop="114792"/>
          <exon e_start="114941" e_stop="115025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGCGAAAACCCCAAAATTTTGCTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATTGATACAGTAAAACTTGTTGAAAATTCGACTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTAGTTAGTATTTTCTGTTTTCTTATTTGCCCTTCTTATCAAGTTTCTTTTTTTTTGTTGTTGTTAAACTTTTCAAGAATGTTGAGGATTTTTATGATGTTGATGTATTGTGCAAATGTTTAGCATTTAGATGCTTGTTTTGTTTCTTGTTTGGCTGAGAAAATGAGGTAGTGCACTATTGGTTTGCCAACTATTGTGTAGATTTTGGAAGGTTAGCATTTGCATCTATGGAGGCTTGAGACGTTTTGAGCTCACACCTTTTTTGCTCTCCCTTGGTACTTCGAACACATAAACTTAAAGTTGGTGATGAAAAGAATGCTTATTGTCTGAGTGACCCCGAGGCTTGAGACTTGAAACTTATTCTTACAGCTGAGATGAGGAGTGAAACATTTTGAGCTCCCACCTTTTTTTTTTCCATTGGTGACTCAAACCCACAAACTTAAGGTTGGAGATGCAGAAAATGTTTAACGTCTGAGCAACCCCGAGGCTTTTGAGACCTGAAAGTTATTCTAACAGCTAAGATGAGGCTTTAGACTTTTTGAGCTACCACCTTTTTTGCTCTCTTAGTGTCTCAAACCCACAAACCTAAGGTTGAAGGTGGAGAGAGCGTTTACTGTTTGAGCAACCTCGAGACTTTTGAGACTTGGAAGTTATTAAATATTAAGCTAAGATGAGTTTTGACTGGAATGAAGCGTTTAGCAAGACTCGGAAAAAAGTTAAGTAAAACTCCAATCTCAATTACCATAGTTAAATTGCAAAAGCATTCCAGTCAGGAGGCTGCTTTGAAGTGAAAAAAGAAGAACAATATTGGGGGTGTGTAAAGGGAAAACTACTGGGCTTGCAAAGAATCTCTCTTCTTTTTCATTTCCCCTTTTTTCTGTTTACCCCTTCTTTTGGTTTTTTAACTTTTTAGAATGTTGAGGATCTAGAAGTTATGTATTGTGTTACATTTAGCATTAGTACTTGTTCTTTTGTTTTTTGTATTGGCTGAGAAAATGAGATAGTTTACTATTGGTTCGCCAACTGTTGTGTAGATTTCGAATGGCTAGCATTTTCATATATGGAGGGTAAAGATGAGTCAGATATAACTTACGGCTAAGATGAATTTTAACCAGAACAAAACCTTTTAGGTCCAATCTATTCATTAGATCTATCCACTTCCATTCTCCTCAAATTTCACACTTAGCCCCATTACCATAGTTAAACTACTACGGGTTTGAATCCTGCAGAAGGTTAGAGGGATGGGCCCATTATCCAATGAGTTTCGAGCTGTGCGCCAAGGGCACTTGGGATTTCTTGGTTATTAGAAAATACCATAGTTAAATTGCTGAAACATTTCCATTTAGCCTACCAAAACCTTACCTAATGGACTAATGGGTGGTATGTGCAAGTTGGAAATTAAGAGGCTTCACTAAAAATAATTTACAAATTGAAATCAGTCTAGTGTCATACCCAAGAGCCTTTATCCTGGAGAAAAAGAAGAACTACGCTAGGGTGTGAAAAAGAAAACTATTGAACTTGCAAAAAATCGTTAAAAATGTTGTGAGAATTAAAAAGATGGAGACATTAGCAACTCAAGATATATTCAGTTTAATAGTCCTTATGTGGGTGAGATTGGAAATTGGGAATGAAACCATCTAAACCCATAACCCAAAAAGTTAATTTTTTAGGGAAGATTCATGATTAGTGTTAACTGATAAGCTTGGGAAAGTCTGGAAAAATGGGTTCGTATCGTGGAAGAGAAGGTAATGGCTTAAGTTGGAGAAGAGTTGAAAAAAGCTGAATTTGGTGCTAGTTTGTTACCATTGGTACCAACTGAACTGTTGCTGGTTTACTGCAATTCTTTTAAGTCTCTGCCTTTGCCCTTTTTTTCCCTGCCTTGAGCAAGCAACTATATTATGCTGGCAGCAGAACATAATTTTCCAGTACCAGTATGCCATCAAGACAAGATAGGCAGGTGCTGTCTGACATGTGTATATCAGGTAAAAGGAAGATATTATCAGGGAAAGAACTTAGTATATGTAGAGACCTTCCTATTCATTCAAATTGGTGTGATAGCATGACTACTTTCCCTTGTTAGTTGTGTTTGGCTAAAACATAACCCTTGATCTCACTCTGGATGACAAGTGCTTAGTTTTATTAATCATATATTATTATAAGAGGGAACCAAAAAAGTTAAAAGTTGAATTACGATTTTACCCTTATTATAAATTAAAATATTTAACTATTTAATTTAAATATTAAATTTTATTATTTTAATCAAAATGTTAATGACTTTTCCACTTCTTTAGAATAATTTTTAATTAAAATATCTAATTTAATTTATTTTCTTGAAATTATTTAAAATATTATTTTTTCGTTTAATATTTATTTCGGGATTCAATGAATTTTGATTATCAAAGTTGAATTACTTTTTTGCCTTTTAATTAATAAAAATTTTAATAAATAAAAATAACTAATCTAATTAGTAGTAGTATTTAAATTGTTACGCAAGCTAATTAAATAGGAGTAATATTTTAATTATCACTCAAATTACAACAACCTATATTCAATGTTTTGGAATTGCTAGCTTTTCATCTTCCTAAAATTATCCTATATTCAATATTTTGATTTTGTTTCAACTTCCTGAAATTATGAAACATTAATGTGAAGTTCATGAATCTCTCAAGCCCTTAGTATACTTTGTCTTTTACTATATAATTATATATGCATTTATTCCATTAATTTAAATTTGTTATTTCTTTTAAATTTCATCCGTTAGAAAACTTTTCATGTACTCTATTAAGTTTTATCACATAACATTTTAAAAAAATATATAGGATGTTGTTCCAATTGATTTGCACAGTAATTTTGATAAGTGTAGAAAAAAATGTTATATATGACATTATATACTTGAGGTTTAATAAAAAATTTGAAGTTATTAGTTTAATGTGGTGTTGCAATGCATGAAAAATATTAGTTTTAATAGTTTGTCATGTTACATTCGATATATATATATACTATTTTACTAATTATTTATGTTAAATTCAAAAAAGAAATGACTCGGAAGTTTAAATCCGACAAAAAATAATCTTCCTTTCAAATTCATATAACTCATATTATTTTCTTAAAAAAATTACTTAACGTGAAATATACGTGCGTTGCACGTATTAGAGAACTAGTTAGCCTAAATTAGTGCCACCATTACCTCTTTAAAAAAGGTCCCCTATAATTAATTCTTGTTAGCCACATCATATAGGGATCATCAAATCAATAGCAATGTTTACTTGAATACAAGGTTCCTCTCTTTTTTTGTTGAAGTAAATGCAAGATATCTTGCTGGATTATTTGTATTACGTGTCGGTGTTTGGGGGGGGGGGGGATTTGTATTACTTGTCGGTGTTAATATAATGGTTGCATAGTTGATATCTGCATTAAAGTCTTTAGTTTGGCTGGAACACCTGCTTTTCTCATGGATATGCTTTCAATATCACTTGCAGAAGCTACTCCAAAGGCAATAATGCGGACAATGGGAGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAGGTCTGTCAGAATACATTAGATTTTTTTCTTATTTGTCTCACAAGCCCACCGCACATCCTTCACTTAAGTCCCAGATGTAAAGAGGAGGAGGTGGGCGGTGGAGCAAAACATGTATGTTTTCTAATGAGCTTAAAATCAAATGTTTTTTGATCAATTTTTAACTATGATGTTGTTTGTTCACTGCAGAAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAAGCTTCAAAAGATGGTAGGTATAGTTGACCCATGTTTTCCTATAACTGGAAACGTGGTTGCTCCTGTAGTTTCACAAGTCTCTTGGCAGTTGGCATATAACCTTCACCATTTCAAAAAGAAAAAGAAAAATAAGTCTCTTAGCATATATTGTTAATTAAGCTTCAAAACTGGCGTAGTGGCTGTCTGGCTGAGATATATATCTTTCGATGCCTCAGGGTTGATGCAAACAGCTTGCTCTTCTGTTATTTATGGTTATACCTTTAGTCTTTCTTCTTCTTCTTTTCTTTTTTTTTTACTTGAAAGGAATAATTAAGGAACATTGTGTACTGATTTGGAATGTAGACTCCAGCAACTCTGTTTACCCCCTCATTTCTTCTTTAAAATAAGCCCAAAAGATGAAAAATGGAAAAATGCAGGAAGAATATCATAAACTTGGGCAGTGATGTGTGAAGCTTACAGAATAACCAAGAAGACACTGATTTTGTTTATGTGTGAGATCAGATCAGTGCAGGAAAGGCTATAGGAAGACATCTTTTTTGAATTTTTCTTTTTTATTGAAACTGGGTTCTTGTTCTGCATTGAAGGACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGAGTAAGGGTTCATCCTATAACTAAGACGGCTACTATTTATTTTTACTTTACCCCAATAATTATATAATTTGCTTGAAATGCGTCTTTTAGTTTAAAGATTGTAAAATGTCTTCAGAGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAAGTAAGCTTTCTGCACTACATCGGATGAGTAAATTGCATTTGAATGTTTCTCAAAATTAATACATGGAGTTGATCCTTTCAAACAAAGATGTCCAGATGAACATGTTCTAAATCATGGCTGATAATTCATTATATTATTTGTTATACAGGCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATC</genome_strand>
        <mrna_strand>GGTTGGCGAAAACCCCAAAATTTT-CTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATCGATACAGTAAAACTTGTTG-AAATTCGGTTACAGAAGCAAAAGGACTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTACTCCAAAGGCAATAATGCGGACAATGGGTGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAG..........................................................................................................................................................................................AAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAGGCTTCAAAAGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGA..................................................................................................................AGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTTCAAGTTGAA....................................................................................................................................................GCCGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475278" ref_strand="+" ref_description="SGN-E475278 [cSTB-39-F6]">
      <seq>gaaaaccccaaaattttctacttaccctttgaatctgcattcaattctatgaaaattgcttaatcgatacagtaaaactttgttgaaattcgattacagaagcaaaaggtgttgattcaatgtttcccagattgattcaatcgcaagaagatgaatttattcatgggtgtgatgttaatgtcgggattcatcatcataatagggttaatggagacccttgtcttgtgttaacttcagatcccaaacctcgtcttcgatggactgctgatcttcatgaacgattcattgatgctgttactcaacttggcggacccagtaaagcaactccaaaggcaataatgcggacaatgggtgtcaagggactgactctcttccacctaaagagccaccttcaggtctattagaatacattagtttttcttatttgcctcacaagcccaccccacatccttcatttaagtcccagatgtaaggaggaggtgggcgggtggagcaaaacatgtatgttttctattgagcttaaaatcaaatgttttttgatcaatttttaaatatgttgtttgttcactgcagaaataccgactaggtaagcaatctcagaaagatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="109546" stop="114243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109846" g_stop="110164" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110165" i_stop="113640" i_length="3476">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113641" g_stop="113943" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="613" r_length="295" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E475278" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109846" e_stop="110164"/>
          <exon e_start="113641" e_stop="113943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCCAAAATTTTGCTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATTGATACAGTAAAAC-TTGTTGAAAATTCGACTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTAGTTAGTATTTTCTGTTTTCTTATTTGCCCTTCTTATCAAGTTTCTTTTTTTTTGTTGTTGTTAAACTTTTCAAGAATGTTGAGGATTTTTATGATGTTGATGTATTGTGCAAATGTTTAGCATTTAGATGCTTGTTTTGTTTCTTGTTTGGCTGAGAAAATGAGGTAGTGCACTATTGGTTTGCCAACTATTGTGTAGATTTTGGAAGGTTAGCATTTGCATCTATGGAGGCTTGAGACGTTTTGAGCTCACACCTTTTTTGCTCTCCCTTGGTACTTCGAACACATAAACTTAAAGTTGGTGATGAAAAGAATGCTTATTGTCTGAGTGACCCCGAGGCTTGAGACTTGAAACTTATTCTTACAGCTGAGATGAGGAGTGAAACATTTTGAGCTCCCACCTTTTTTTTTTCCATTGGTGACTCAAACCCACAAACTTAAGGTTGGAGATGCAGAAAATGTTTAACGTCTGAGCAACCCCGAGGCTTTTGAGACCTGAAAGTTATTCTAACAGCTAAGATGAGGCTTTAGACTTTTTGAGCTACCACCTTTTTTGCTCTCTTAGTGTCTCAAACCCACAAACCTAAGGTTGAAGGTGGAGAGAGCGTTTACTGTTTGAGCAACCTCGAGACTTTTGAGACTTGGAAGTTATTAAATATTAAGCTAAGATGAGTTTTGACTGGAATGAAGCGTTTAGCAAGACTCGGAAAAAAGTTAAGTAAAACTCCAATCTCAATTACCATAGTTAAATTGCAAAAGCATTCCAGTCAGGAGGCTGCTTTGAAGTGAAAAAAGAAGAACAATATTGGGGGTGTGTAAAGGGAAAACTACTGGGCTTGCAAAGAATCTCTCTTCTTTTTCATTTCCCCTTTTTTCTGTTTACCCCTTCTTTTGGTTTTTTAACTTTTTAGAATGTTGAGGATCTAGAAGTTATGTATTGTGTTACATTTAGCATTAGTACTTGTTCTTTTGTTTTTTGTATTGGCTGAGAAAATGAGATAGTTTACTATTGGTTCGCCAACTGTTGTGTAGATTTCGAATGGCTAGCATTTTCATATATGGAGGGTAAAGATGAGTCAGATATAACTTACGGCTAAGATGAATTTTAACCAGAACAAAACCTTTTAGGTCCAATCTATTCATTAGATCTATCCACTTCCATTCTCCTCAAATTTCACACTTAGCCCCATTACCATAGTTAAACTACTACGGGTTTGAATCCTGCAGAAGGTTAGAGGGATGGGCCCATTATCCAATGAGTTTCGAGCTGTGCGCCAAGGGCACTTGGGATTTCTTGGTTATTAGAAAATACCATAGTTAAATTGCTGAAACATTTCCATTTAGCCTACCAAAACCTTACCTAATGGACTAATGGGTGGTATGTGCAAGTTGGAAATTAAGAGGCTTCACTAAAAATAATTTACAAATTGAAATCAGTCTAGTGTCATACCCAAGAGCCTTTATCCTGGAGAAAAAGAAGAACTACGCTAGGGTGTGAAAAAGAAAACTATTGAACTTGCAAAAAATCGTTAAAAATGTTGTGAGAATTAAAAAGATGGAGACATTAGCAACTCAAGATATATTCAGTTTAATAGTCCTTATGTGGGTGAGATTGGAAATTGGGAATGAAACCATCTAAACCCATAACCCAAAAAGTTAATTTTTTAGGGAAGATTCATGATTAGTGTTAACTGATAAGCTTGGGAAAGTCTGGAAAAATGGGTTCGTATCGTGGAAGAGAAGGTAATGGCTTAAGTTGGAGAAGAGTTGAAAAAAGCTGAATTTGGTGCTAGTTTGTTACCATTGGTACCAACTGAACTGTTGCTGGTTTACTGCAATTCTTTTAAGTCTCTGCCTTTGCCCTTTTTTTCCCTGCCTTGAGCAAGCAACTATATTATGCTGGCAGCAGAACATAATTTTCCAGTACCAGTATGCCATCAAGACAAGATAGGCAGGTGCTGTCTGACATGTGTATATCAGGTAAAAGGAAGATATTATCAGGGAAAGAACTTAGTATATGTAGAGACCTTCCTATTCATTCAAATTGGTGTGATAGCATGACTACTTTCCCTTGTTAGTTGTGTTTGGCTAAAACATAACCCTTGATCTCACTCTGGATGACAAGTGCTTAGTTTTATTAATCATATATTATTATAAGAGGGAACCAAAAAAGTTAAAAGTTGAATTACGATTTTACCCTTATTATAAATTAAAATATTTAACTATTTAATTTAAATATTAAATTTTATTATTTTAATCAAAATGTTAATGACTTTTCCACTTCTTTAGAATAATTTTTAATTAAAATATCTAATTTAATTTATTTTCTTGAAATTATTTAAAATATTATTTTTTCGTTTAATATTTATTTCGGGATTCAATGAATTTTGATTATCAAAGTTGAATTACTTTTTTGCCTTTTAATTAATAAAAATTTTAATAAATAAAAATAACTAATCTAATTAGTAGTAGTATTTAAATTGTTACGCAAGCTAATTAAATAGGAGTAATATTTTAATTATCACTCAAATTACAACAACCTATATTCAATGTTTTGGAATTGCTAGCTTTTCATCTTCCTAAAATTATCCTATATTCAATATTTTGATTTTGTTTCAACTTCCTGAAATTATGAAACATTAATGTGAAGTTCATGAATCTCTCAAGCCCTTAGTATACTTTGTCTTTTACTATATAATTATATATGCATTTATTCCATTAATTTAAATTTGTTATTTCTTTTAAATTTCATCCGTTAGAAAACTTTTCATGTACTCTATTAAGTTTTATCACATAACATTTTAAAAAAATATATAGGATGTTGTTCCAATTGATTTGCACAGTAATTTTGATAAGTGTAGAAAAAAATGTTATATATGACATTATATACTTGAGGTTTAATAAAAAATTTGAAGTTATTAGTTTAATGTGGTGTTGCAATGCATGAAAAATATTAGTTTTAATAGTTTGTCATGTTACATTCGATATATATATATACTATTTTACTAATTATTTATGTTAAATTCAAAAAAGAAATGACTCGGAAGTTTAAATCCGACAAAAAATAATCTTCCTTTCAAATTCATATAACTCATATTATTTTCTTAAAAAAATTACTTAACGTGAAATATACGTGCGTTGCACGTATTAGAGAACTAGTTAGCCTAAATTAGTGCCACCATTACCTCTTTAAAAAAGGTCCCCTATAATTAATTCTTGTTAGCCACATCATATAGGGATCATCAAATCAATAGCAATGTTTACTTGAATACAAGGTTCCTCTCTTTTTTTGTTGAAGTAAATGCAAGATATCTTGCTGGATTATTTGTATTACGTGTCGGTGTTTGGGGGGGGGGGGGATTTGTATTACTTGTCGGTGTTAATATAATGGTTGCATAGTTGATATCTGCATTAAAGTCTTTAGTTTGGCTGGAACACCTGCTTTTCTCATGGATATGCTTTCAATATCACTTGCAGAAGCTACTCCAAAGGCAATAATGCGGACAATGGGAGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAGGTCTGTCAGAATACATTAGATTTTTTTCTTATTTGTCTCACAAGCCCACCGCACATCCTTCACTTAAGTCCCAGATGTAAAGAGGAGGAGGTGGGCGGTGGAGCAAAACATGTATGTTTTCTAATGAGCTTAAAATCAAATGTTTTTTGATCAATTTTTAACTATGATGTTGTTTGTTCACTGCAGAAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATG</genome_strand>
        <mrna_strand>GAAAACCCCAAAATTTT-CTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATCGATACAGTAAAACTTTGTTG-AAATTCGATTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTCCAAAGGCAATAATGCGGACAATGGGTGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAGGTCTATTAGAATACATTAG---TTTTTCTTATTTGCCTCACAAGCCCACCCCACATCCTTCATTTAAGTCCCAGATGTAAGGAGGAGGTGG-GCG-GGTGGAGCAAAACATGTATGTTTTCTATTGAGCTTAAAATCAAATGTTTTTTGATCAATTTTTAA--AT-ATGTTGTTTGTTCACTGCAGAAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735297" ref_strand="+" ref_description="SGN-E735297 [LB14DH01]">
      <seq>cgatccaccttcagaaataccgactaggacttacagctacgtattcattagaaagcccttgttctggtggtactcctcagcagttgcctgcatcagacttgaatgaaggttttgaagtcaaggaggcattgagagctcaaatggaagtgcaaagtaaattgcacctccaagttgaagctgagaagcacttgcaaattcggcaggatgctgaacaaagatatattaccatgctggagaaggcctgtaaaatgctcgctgatcaattcatcggtgatgtagttactgaaaatcaccaagagacttaccaaggactaaatacgaagacacaacttagccctttatgtaatccacatggattgtgcccctcggagtctgctgactttgttggagtccatggtccagaagacgtttcccccagaatccatccacaacgcacggattgttccactgaaagctgcttaacttcgcatgagagccccgctggacttcctgtagaaggatcttcacctggagggaaaaagcgagggcttagtggtgattcaacacaagcatcatatgtttggggtgaagcagatatgagatcatccggtgttcacgtgctaccagttaattgctttggtatttctggctctaatgttcaaaatgtctctaattaagagattaagccaagtccgtccatagtcattgctttgcacattgcagtttctgggaagtccaatgagcccaacttaaaactgtgtaaatgcaagctgatgttattctaactcttaactgcatctctgtgaaatcatcttagttccttgaaaaagaaaaaaagagaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="113594" stop="115890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113704" g_stop="113717" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113718" i_stop="113903" i_length="186">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113904" g_stop="113916" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="27" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113917" i_stop="114529" i_length="613">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114530" g_stop="114608" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="106" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114609" i_stop="114722" i_length="114">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114723" g_stop="114792" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="176" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114941" g_stop="115593" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="829" r_length="653" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E735297" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113704" e_stop="113717"/>
          <exon e_start="113904" e_stop="113916"/>
          <exon e_start="114530" e_stop="114608"/>
          <exon e_start="114723" e_stop="114792"/>
          <exon e_start="114941" e_stop="115593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCACCTTCAGGTCTGTCAGAATACATTAGATTTTTTTCTTATTTGTCTCACAAGCCCACCGCACATCCTTCACTTAAGTCCCAGATGTAAAGAGGAGGAGGTGGGCGGTGGAGCAAAACATGTATGTTTTCTAATGAGCTTAAAATCAAATGTTTTTTGATCAATTTTTAACTATGATGTTGTTTGTTCACTGCAGAAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAAGCTTCAAAAGATGGTAGGTATAGTTGACCCATGTTTTCCTATAACTGGAAACGTGGTTGCTCCTGTAGTTTCACAAGTCTCTTGGCAGTTGGCATATAACCTTCACCATTTCAAAAAGAAAAAGAAAAATAAGTCTCTTAGCATATATTGTTAATTAAGCTTCAAAACTGGCGTAGTGGCTGTCTGGCTGAGATATATATCTTTCGATGCCTCAGGGTTGATGCAAACAGCTTGCTCTTCTGTTATTTATGGTTATACCTTTAGTCTTTCTTCTTCTTCTTTTCTTTTTTTTTTACTTGAAAGGAATAATTAAGGAACATTGTGTACTGATTTGGAATGTAGACTCCAGCAACTCTGTTTACCCCCTCATTTCTTCTTTAAAATAAGCCCAAAAGATGAAAAATGGAAAAATGCAGGAAGAATATCATAAACTTGGGCAGTGATGTGTGAAGCTTACAGAATAACCAAGAAGACACTGATTTTGTTTATGTGTGAGATCAGATCAGTGCAGGAAAGGCTATAGGAAGACATCTTTTTTGAATTTTTCTTTTTTATTGAAACTGGGTTCTTGTTCTGCATTGAAGGACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGAGTAAGGGTTCATCCTATAACTAAGACGGCTACTATTTATTTTTACTTTACCCCAATAATTATATAATTTGCTTGAAATGCGTCTTTTAGTTTAAAGATTGTAAAATGTCTTCAGAGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAAGTAAGCTTTCTGCACTACATCGGATGAGTAAATTGCATTTGAATGTTTCTCAAAATTAATACATGGAGTTGATCCTTTCAAACAAAGATGTCCAGATGAACATGTTCTAAATCATGGCTGATAATTCATTATATTATTTGTTATACAGGCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTTGAAAAAGAAAAAAAGAGAAGAAAATTG</genome_strand>
        <mrna_strand>CGATCCACCTTCAG..........................................................................................................................................................................................AAATACCGACTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGA..................................................................................................................AGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAA....................................................................................................................................................GCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTTGAAAAAGAAAAAAAGAGAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597415" ref_strand="+" ref_description="SGN-E597415 [40918]">
      <seq>caatggtatactgatttggaatgtagactccagcaactccatttaccccctcatttcttctttagataagccaaaaagatgaaaaatgaaaaaatgcaggaagaatatcataaacttgggcagtgatatgtgaagcttacagaataaccaagaagacaccgtgatgttgtttatgtgtgagatcagatcagtgcaggaaggctctaggaagaagctcttttttgaatttttcttttatatttaaactgggttcttgttcatcattgaaggacttacagctacgtattcattagaaagcccttgttctggtggtactcctcagcagttgcctgcatcagacttgaatgaaggttttgaagtcaaggaggcattgagagctcaaatggaagtgcaaagtaaattgcacctccaagttgaagccgagaagcacttgcaaattcggcaggatgctgaacaaagatatattaccatgctggagaaggcctgtaaaatgctcgctgatcaattcatcggtgatgtagttactgaaaattaccaagagacttaccaaggactaaatacaaagacacaacttagccctttatgtaatccacatggattgtgcccctcggagtctgctgactttgttggagtccatggtccagaagtagtttcccccagaatccatccacaaacgcacggattgttccactgaaagttgcttaacttcgcatgagagccccgctggatttctctaaaaggatcttcacctggagggaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="113964" stop="115584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114262" g_stop="114608" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114609" i_stop="114722" i_length="114">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114723" g_stop="114792" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="418" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114941" g_stop="115285" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="763" r_length="345" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E597415" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114262" e_stop="114608"/>
          <exon e_start="114723" e_stop="114792"/>
          <exon e_start="114941" e_stop="115285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGTGTACTGATTTGGAATGTAGACTCCAGCAACTCTGTTTACCCCCTCATTTCTTCTTTAAAATAAGCCCAAAAGATGAAAAATGGAAAAATGCAGGAAGAATATCATAAACTTGGGCAGTGATGTGTGAAGCTTACAGAATAACCAAGAAGACA-C-TGATTTTGTTTATGTGTGAGATCAGATCAGTGCAGGAAAGGCTATAGGAAG-ACATCTTTTTTGAATTTTTCTTTTTTATTGAAACTGGGTTCTTGTTCTGCATTGAAGGACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGAGTAAGGGTTCATCCTATAACTAAGACGGCTACTATTTATTTTTACTTTACCCCAATAATTATATAATTTGCTTGAAATGCGTCTTTTAGTTTAAAGATTGTAAAATGTCTTCAGAGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAAGTAAGCTTTCTGCACTACATCGGATGAGTAAATTGCATTTGAATGTTTCTCAAAATTAATACATGGAGTTGATCCTTTCAAACAAAGATGTCCAGATGAACATGTTCTAAATCATGGCTGATAATTCATTATATTATTTGTTATACAGGCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCAC-AACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAG</genome_strand>
        <mrna_strand>CAATGGTATACTGATTTGGAATGTAGACTCCAGCAACTCCATTTACCCCCTCATTTCTTCTTT-AGATAAGCCAAAAAGATGAAAAATGAAAAAATGCAGGAAGAATATCATAAACTTGGGCAGTGATATGTGAAGCTTACAGAATAACCAAGAAGACACCGTGATGTTGTTTATGTGTGAGATCAGATCAGTGCAGG-AAGGCTCTAGGAAGAAGCTCTTTTTTGAATTTTTCTTTTATATTTAAACTGGGTTCTTGTTCATCATTGAAGGACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGA..................................................................................................................AGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAA....................................................................................................................................................GCCGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATTACCAAGAGACTTACCAAGGACTAAATACAAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGTAGTTTCCCCCAGAATCCATCCACAAACGCACGGATTGTTCCACTGAAAGTTGCTTAACTTCGCATGAGAGCCCCGCTGGA-TTTCTCTAAAAGGATCTTCACCTGGAGGGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597153" ref_strand="+" ref_description="SGN-E597153 [40650]">
      <seq>ctcaaatggaagtgcaaagtaaattgcacctccaagttgaagccgagaagcacttgcaaattcggcaggatgctgaacaaagatatattaccatgctggagaaggcctgtaaaatgctcgctgatcaattcatcggtgatgtagttactgaaaattaccaagagacttaccaaggactaaatacaaagacacaacttagccctttatgtaatccacatggattgtgcccctcggagtctgctgactttgttggagtccatggtccagaagtagtttcccccagaatccatccacaacgcacggattgttccactgaaagttgcttaacttcgcatgagagccccgctggatttcctctagaaggatcttcacctggagggaaaaaacgtgggcttagcggagattcaacacatgcatcatatgtttggggtgaagcagatatgagatcatccggtgttcacgtgctaccagttaattgctttggaattactgattctaatgttcaaaatgtttctaattaagagattaagccaagttcgtccatagtcattgctttgcacattgcagtttctgggaagtccaatgagcccaacttaaagctgtgtaaatgcaagctgatgttattccaactcttaactgcatctctgtgaaatcttattccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="114452" stop="120771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114752" g_stop="114792" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114941" g_stop="115576" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="673" r_length="632" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E597153" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114752" e_stop="114792"/>
          <exon e_start="114941" e_stop="115576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAAGTAAGCTTTCTGCACTACATCGGATGAGTAAATTGCATTTGAATGTTTCTCAAAATTAATACATGGAGTTGATCCTTTCAAACAAAGATGTCCAGATGAACATGTTCTAAATCATGGCTGATAATTCATTATATTATTTGTTATACAGGCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTTGAAAAAGAAA</genome_strand>
        <mrna_strand>CTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAA....................................................................................................................................................GCCGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATTACCAAGAGACTTACCAAGGACTAAATACAAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGTAGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGTTGCTTAACTTCGCATGAGAGCCCCGCTGGATTTCCTCTAGAAGGATCTTCACCTGGAGGGAAAAAACGTGGGCTTAGCGGAGATTCAACACATGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGAATTACTGATTCTAATGTTCAAAATGTTTCTAATTAAGAGATTAAGCCAAGTTCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAGCTGTGTAAATGCAAGCTGATGTTATTCCAACTCTTAACTGCATCTCTGTG-AA--ATCTTA-TTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609729" ref_strand="+" ref_description="SGN-E609729 [25744]">
      <seq>gtaaaatgctcgctgatcaattcatcggtgatgtagttactgaaaattaccaagagacttaccaaggactaaatacaaagacacaacttagccctttatgtaatccacatggattgtgcccctcggagtctgctgactttgttggagtccatggtccagaagtagtttcccccagaatccatccacaacgcacggattgttccactgaaagttgcttaacttcgcatgagagccccgctggatttcctctagaaggatcttcacctggagggaaaaaacgtgggcttagcggagattcaacacatgcatcatatgtttggggtgaagcagatatgagatcatccggtgttcacgtgctaccagttaattgctttggaattactggttctaatgttcaaaatgtctctaattaagagattaagccaagctcgtccatagtcattgctttgcacattgcagtttatgggaagtccaatgtgcccaacttaaagctgtgtaaatgcaagctgatgttattccaactcttaactgcatctctgtgaaatcttagttccttaaaaaaaaaagaaaaaaagaggaaaattgagattccatttgcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="114708" stop="115913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115008" g_stop="115610" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="612"/>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E609729" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115008" e_stop="115610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTT-GAAAAAGAA-AAAAAGAGAAGAAAATTGAGATTCCATTTGCTTTT</genome_strand>
        <mrna_strand>GTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATTACCAAGAGACTTACCAAGGACTAAATACAAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGTAGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGTTGCTTAACTTCGCATGAGAGCCCCGCTGGATTTCCTCTAGAAGGATCTTCACCTGGAGGGAAAAAACGTGGGCTTAGCGGAGATTCAACACATGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGAATTACTGGTTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGCTCGTCCATAGTCATTGCTTTGCACATTGCAGTTTATGGGAAGTCCAATGTGCCCAACTTAAAGCTGTGTAAATGCAAGCTGATGTTATTCCAACTCTTAACTGCATCTCTGTG-AA--ATCTTAGTTCCTTAAAAAAAAAAGAAAAAAAGAGGAAAATTGAGATTCCATTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476255" ref_strand="+" ref_description="SGN-E476255 [cSTB-43-H24]">
      <seq>gcttcctaaattcaccataaaggttgctgtgccagtatatgccgacatgtcattcagaagaaggcaaagtttgatatcatgagacttaattgcttaccaggtttctcctaaaacatatattcctgctctctttggaccatgcctaaagatgataagtttgttcagccccatcactctgatctcatttataaatcatatgcgggtgataaaaacattatcaagtttgatggtgaccacaattcctcccgaccaccaattttattatgattcagtgtctattttcttctacaatgtcctccaccctcccgggatttcaccaactaaaagtaaaatagagaaatattacgatttaggggacatcaaggtcagtgctggaatggatgagaacctcttgtatgagataattgcaactcttcggaatgttacttctgatacagcaagctcttcatatgtgccacctagcatttcaacagctaagtctgctggcgaactccttgctgacattgccccaattgctagtctaaatgatccattaattaatggaggagaagaacttaatggtcatgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="123827" stop="118164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123527" g_stop="123512" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123511" i_stop="122871" i_length="641">
            <donor d_prob="0.662" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122870" g_stop="122790" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="100" r_length="84" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122789" i_stop="122550" i_length="240">
            <donor d_prob="0.139" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122549" g_stop="122451" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122450" i_stop="122372" i_length="79">
            <donor d_prob="0.481" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122371" g_stop="122189" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="385" r_length="184" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122188" i_stop="118779" i_length="3410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.750" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118778" g_stop="118638" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="526" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118637" i_stop="118509" i_length="129">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118508" g_stop="118464" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="571" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E476255" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123527" e_stop="123512"/>
          <exon e_start="122870" e_stop="122790"/>
          <exon e_start="122549" e_stop="122451"/>
          <exon e_start="122371" e_stop="122189"/>
          <exon e_start="118778" e_stop="118638"/>
          <exon e_start="118508" e_stop="118464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCTAAATTCACCGTATGGATCCCCTTCTTTTCTGTGGATGGACATCTATAACGTGATCTGAAACAAGTACTTGCATATTTATGATCTTCTTAGAGGGTGGTTAAAAAGAAATCATTTTGTATGACATCAATTTGTGCATAATTTTTTTTCATACAAGTGCATTACTATCTTGTGGGTTTTATTTCATTATATTTTGTATATATGCACTTGGTCAATTTGTTATGCATCGGGAATGTGGTTTGTTTCCCAGTTTTAGTTTGTCTTTTCCAAACAGTTGCACGGGGAAAGAAAAGGACCAAATTATGAGTTCAGAATGAACTTTTTTCATTGGCTCATTCCATATTTTCTAGGCGGAAAGGTTTAATATATTTGGCTTTACTAGTTCAAGATCATTGATGAGAATATGACTGCCGGAAATCATGTCTACTGGATAATTTACTGAAAACTATCTCTAATCGGCTGCATATAATCTGCTCTATTTGTGTCCCTTCAAGCTAAAAAATGCATATTTTGTCAAAGCTCCCTAGTGTTCATCAAACAGAAGGAGAATGCTAGAAGAAGAGTGTTTATAGTCTTAAGAAAGTTTGAAGTACTTGCAAACGCCTGTGTCATTCTCATAAGGTATTGAGATCTTACTCTCTTTATTTCTGCAGATAAAGGTTGCTGTG-CAGTATATG-CGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTA-CAGGTGCTTGAGCTCATGGTTGTCTCGAGTCTAATCCATTTGTCCTTTGAAGTTGATAAAAGCTTGTTTAATTCATGTAGTTAATTTGTTTGATAATGCACTTAATTTGGGAAAAAAACATATACTCATATAACTAAGCTGAGCATTTGAACAGGTTTTAAGTTTTTCCAACTATGGTATGTATCTGATTTGGATTGAATGGGTATTAATATTGATGTGTCAAAAATTTACTGATTCTGGCAGGTTTCTCCCAAAACATATATTCCTGCTCTCTTTGGA-CATG-CTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCGGTACAGAATATTTTGGATATCTTTAAAGTAAGTTGTGATGTGGTGAATTGTGTGTAATCTATTATTTTTCTTTGTACAGGGTGATAAAAACATTATCAAGTTTGATGGTGACCACAATTCCTCCCGACCA-CAATTCTATTATGATTCAGTGTCTATTTTCTTCTACAATGTCCTCCACCCTCCTGGGATTTCACCAACTAAAAGTAAAATAGAGAAATATTACGATTTAGGGGACATCAAGGTTGGTGCTGGAATGGATGAGGTAATTTTTCCCAGTTGTATTTTCAGACGAGTGTAAATAACTCATTAAGTTTCCTAGATTTGAATTGTTTTTTTTTTTTTAATTATTATTGTATTTACCAGATCAGCTCAATGTCTTTTGTCAATGAACAAAAGATTATATTCCTAACTAATTAGCAAGGAGAAGAAAATTCTGTTTGAACAAGAAATTCATAATTTTTTTAAAATTTTTTTGACAAGTGATGTGAAGCTCTATAGAAATAGCCAGCAAAAAGGATATGCTGGTTCAAAAGTTACATCCCAAACAAGCATTGCAATGAGTGTAACGAGCTAACAATATCAACGATGGCTACAAGACCATTTTACATCATCATTAGCCATGTTGTACCAAAAGCTAAGCAAAGAAATACATCGAGTCTTACTATTAACAATATTTCTGAGTTCTATAAAATCCTAGTGTTCCTTCCTTTCCAAATTATCCATAAGACCACAGCTGGAATGGTGTTACAAATAGACCGAGAAGACTTGTTAAGACCCGCTTTCTTCCAGTTCTGAAGAAAAAAGGGATGTGGAACTCTGTATGCACCAATAATCTTCTTGGTTTGTCTTTTGTTGGTTTAAGCGGGAGGATATTTTTGCAAGATTTTGCTGTAACTTTTTCGGCATTCTCTCCTTTCACCTAACACGACTTATGTGAGCATTGCAACATATAGTTGGTTCCGAGTCCAGATAAGTGTCACGGATTGATGGTCAACAATAATAATCTTAATATGATGAATCCTCCAAGTATTGTTATGTTCGCGAGGAAAACCTAGACATGCACCACATTAGTACCTAGATGTAGTGTTAAATAATCAATGAGGTCATCACATTGACACATGGATGTGAGGGAGTATGAGCAGTGTTTGGGACACCCGATGCAGGCTGGTTATAGAAGAAGTTCCATCACATCTATGCCAAGATTTGGTCCTACATAAGGAAGGGGTCCCACATATTAATCTTTTCAAATTCGGATGGAACAATGATTTGAATCAAAGAAGGATCGAGAATATCAAGGTATATTGTCTCCTACTTTGCCGGGTAAATCCAATTAAAATTACCATATTGCCTATACAAAGGAGAGAGTAAAGAAGCTAGCTTAAGAGTGTCAGTTTGGATAGACAGCTGGAAATTGGAATATAGTTCACTAATAAAGAAGTCAATAGAATTAGTTGATATATTAAAGAGGAGGATGGTTGATACTGATGTAAGTTATTATCAGTGTTTTGGATGGTGAAAGGCGACGAAAGGTGATAAGGGTCTGTTTTGCCGCAAGGCGAGGCACTCGCCTTTTTGAAGTGTCGCATCAATTAATAAAAAAATTAAAATAATTAATTACATATACAACCAATCAAAATCTCAATAACAATAACATATTAGCAAATATTTCAATTCAAAAACTTAAAATAGATAGTAGATACTAAAAAGTCTAGAACTTGAATGAGAAAACACAGAACAGAAGTAAATAAAAGTAACTTTGAAGTCTAAAGAAGAAGGAAAAAGAAACAGAGGAAGGAGAAAAGAAGAAGAAATACGTATTAGTTGGACTTTTTATGTCTCCGAAAAAGTCTGGATGGCTGCCGGAGAAGTCTAGTTGAGTCAACTAGTTGGAGTCATAGTCTAGGAGTGCAATTGTCCAAGTTTGGTAAGAAAACCCTATAATTGCCTTTTACCTTTAAAAACCTTCAATTGGTCGCCCTTTTTTTTTTTAAGGAAATACAAAAGGCAATGCCATTCTTACCTTTGTTGCCATCGTACCCCATGGCCTGTGTTTTGGACAGCGAGAGGCGACAAGGGCCTGCCTCGCCACACGGCGAGGCGAGCGGCGAGGCGCTTGCCTTTTTGAATTAAGCCGCCAATGAATACCAAAAATTAAAAATATTTAATTGCATATTTTAATCCAAAATCTTAATAGTAATAACAAATATTAGCAAATATTCAATTCAAAAACCAATAGTAGATACTAAAAAGGAGTCGCGCAACAGCAAATTTTGAAAATAGAAAAAAAAACCCTAATTTTGACTAATATCGTTAAGTGAAATCTTTGTAAAAAAATTAAATCAAAAAGGCGACGCCATGGGTCGCCTTTTGTATGTCGCCTCGCCTCATTGTGGAATGGCGAGAAGGGCTCGTCTCGCCTCGCCTCTCGCCTTTGGCGATGAGGCGCTCGCCATTCACAACACTGCCCATGGCATCACCTTTTGGAGATCGCCTCACCACAAAGCTAATAGGCGATGAAGGGTCGTCTCGCCTCGCCTCGTCTCAGCTCGCCTCTCGTCATTGGTGACGCGGCGATCACCTTTCACAACACTGGTTACTATATATGTGTATTACCTTGTAAAAAGAATAGTTACTATATTTCATATTTTTTAATAGTTAAGACGTTTGAAACTTCATAGTAAAAGGAAAACGGTCGGGTTGACTCTCCAAATTGTAATGGTCCATTCCTTTGGGTCAAAAGGGGTAGTTAAATTGGTGATATGGAAAATTGTATCTTGGCTAAAGAGTTTCTTGTATATGTGAGGGAGATTTTGGATAAATTTGATTGTATGATTAATTAGAAAAAATAATCACGGTCTCAAAGTTAGTTTTCTAGATTATGTCAGCTTATATGATTTTGATTAGAGAAGGGTATTTATAGGACTCACTCAATTTGACTTGCTCGGACTCTTCATTTTTGGTGCCGCACTCTTCTCGAAACGACATGGGTGTGGGATCCATGTCCGATTTGGTGTGCCGATTTTGGGTACTTTGGCCAAAATCGATTAGGAAAGTTTGGATAGTTTTAATGATTGTTGTAATCAATACAAAAGCTAAAGTGAAATGGAAGAAAATGGAATACCTTTTATATATAGATATTTCTTTGTCACTCCTTTTCCTTAATCTCCTTCCAGGATTCTCCTCAAGTTCTCTACATAATATCTTATAATTTACATTTTATAACTCCATTTTTAGATAATTAAAATATTTTTAGGCGAATCCCCGCACCCGCACCCATACATGGATCCATATCCCCGAATCTTAGAAATTACATCACGAAGAATCCAACCTCAAGATATGCACCCGTATCGGACACCTGCACCCTGAGTCCGAGCAACTTACGTAAAATGTGAAGTAAAATGACAAGGGTTTCACATATATATGTGTGTGTGTGTAATACATGTATGCTGCTTACAAGTAACTCTAGAACTTCTGTACTGCAATCACTTCATTCTTCGAGAAGTAATCGAAACTAATTTGATGTCTAACTTAGCTGTCATGAATTCTTCACATTTTTGTGTATTACTAGTAGTTCCTTCTCTATTTGACATGATTGTTAACGATATATATTTACTTAACTGTTGTGAATCATGCGGTCTGATGTACGTTTCATTTGCGGTGATCTATTCATAGAATCTCTTGTATGAGATAATTGCAACTCTTCGGAATGTTACTGCTGATACAGCAAGCTCTTCATCTGTGCCACCTAGCATTTCAACAGCTAAGTCTGCTGGCGAACTCCTTGCCGACATTGCCCCAATTGCTAGTTTGAATGTAAGAATTCTCTTTAACTCTCAAGTTCCCATGTTCTTCCACCCCTATCTCTTCCCCGATGAGTTTTTCTCAATGGCAGTGATGTTAAGTTGCGTCACTATAAGTTGATTGATTTGTTACTTATTGTAGGATCCATTTATTAATGGAGGAGAAGAACTTAATGGTCATGCTACT</genome_strand>
        <mrna_strand>GCTTCCTAAATTCACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGTTGCTGTGCCAGTATATGCCGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTACCAG................................................................................................................................................................................................................................................GTTTCTCCTAAAACATATATTCCTGCTCTCTTTGGACCATGCCTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCG...............................................................................GGTGATAAAAACATTATCAAGTTTGATGGTGACCACAATTCCTCCCGACCACCAATTTTATTATGATTCAGTGTCTATTTTCTTCTACAATGTCCTCCACCCTCCCGGGATTTCACCAACTAAAAGTAAAATAGAGAAATATTACGATTTAGGGGACATCAAGGTCAGTGCTGGAATGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCTTGTATGAGATAATTGCAACTCTTCGGAATGTTACTTCTGATACAGCAAGCTCTTCATATGTGCCACCTAGCATTTCAACAGCTAAGTCTGCTGGCGAACTCCTTGCTGACATTGCCCCAATTGCTAGTCTAAAT.................................................................................................................................GATCCATTAATTAATGGAGGAGAAGAACTTAATGGTCATGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345888" ref_strand="+" ref_description="SGN-E345888 [cTOF-24-K8]">
      <seq>cttgtcagatggcaactatgttagtcttggttggcatgagaaagatgacctcaaggtagttgtgtcacatctgagaagcaacctgaaagtttcacgcataggtctatggggacggtctatgggtgcagttacaagccttctatatggagcggaagatccttctattgctggaatggtcttggacagtgccttctctaacttatttgatctaatgatggagcttgtagatgtctacaaaatcaggcttcctaaattcaccataaaggttgctgtgcagtatatgcgacatgtcattcagaagaaggcaaagtttgatatcatgagacttaattgcttacaggtttctcccaaaacatatattcctgctctctttggacatgctaaagatgataagtttgttcagccccatcactctgatctcatttataaatcatatgcgggtgataaaaacattatcaagtttgatggtgaccacaattcctcccgaccacaattctattatgattcagtgtctattttcttctacaatgtcctccaccctcctgggatttcaccaactaaaagtaaaatagagaaatattacgatttaggggacatcaagggttggtgctggaatggatgagaatctcttgtatgagataattgcaactcttcggaatgttactgctgatacagcaagctcttcatctgtgccacctagcatttaacagctaagtctgctggcgaactccttgccgacattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="124313" stop="118357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124013" g_stop="123974" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123973" i_stop="123895" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123894" g_stop="123800" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="135" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123799" i_stop="123636" i_length="164">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123635" g_stop="123512" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="259" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123511" i_stop="122871" i_length="641">
            <donor d_prob="0.662" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122870" g_stop="122790" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="340" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122789" i_stop="122550" i_length="240">
            <donor d_prob="0.139" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122549" g_stop="122451" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="439" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122450" i_stop="122372" i_length="79">
            <donor d_prob="0.481" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122371" g_stop="122189" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="623" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122188" i_stop="118779" i_length="3410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118778" g_stop="118657" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="744" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E345888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124013" e_stop="123974"/>
          <exon e_start="123894" e_stop="123800"/>
          <exon e_start="123635" e_stop="123512"/>
          <exon e_start="122870" e_stop="122790"/>
          <exon e_start="122549" e_stop="122451"/>
          <exon e_start="122371" e_stop="122189"/>
          <exon e_start="118778" e_stop="118657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCAGATGGCAACTATGTTAGTCTTGGTTGGCATGAGGTACTGCCTTTTCTTTTTCTTGCATGCATTATTTTTGTGGTGCTTGTGATATATGAATAACTCTTCGTTTGCGTATCAGAAAGATGACCTCAAGGTAGTTGTGTCACATCTGAGAAGCAACCTGAAAGTTTCACGCATAGGTCTATGGGGACGGTCTATGGGTGCAGTTACAAGGTATTTTCACTTTGCGTACTTCAATTGCTAGTAAATTTTCAATCCAAATTCTTCTGGAAAAGACAAGTTAGATTCTAGCTGACTGTTTGACTATGATTCTGATTTCTTTTTGTTTCTAAATAATTCCATGATCACAATTTTAATAATTCTGTTTAATGTACCAGCCTTCTATATGGAGCGGAAGATCCTTCTATTGCTGGAATGGTCTTGGACAGTGCCTTCTCTAACTTATTTGATCTAATGATGGAGCTTGTAGATGTCTACAAAATCAGGCTTCCTAAATTCACCGTATGGATCCCCTTCTTTTCTGTGGATGGACATCTATAACGTGATCTGAAACAAGTACTTGCATATTTATGATCTTCTTAGAGGGTGGTTAAAAAGAAATCATTTTGTATGACATCAATTTGTGCATAATTTTTTTTCATACAAGTGCATTACTATCTTGTGGGTTTTATTTCATTATATTTTGTATATATGCACTTGGTCAATTTGTTATGCATCGGGAATGTGGTTTGTTTCCCAGTTTTAGTTTGTCTTTTCCAAACAGTTGCACGGGGAAAGAAAAGGACCAAATTATGAGTTCAGAATGAACTTTTTTCATTGGCTCATTCCATATTTTCTAGGCGGAAAGGTTTAATATATTTGGCTTTACTAGTTCAAGATCATTGATGAGAATATGACTGCCGGAAATCATGTCTACTGGATAATTTACTGAAAACTATCTCTAATCGGCTGCATATAATCTGCTCTATTTGTGTCCCTTCAAGCTAAAAAATGCATATTTTGTCAAAGCTCCCTAGTGTTCATCAAACAGAAGGAGAATGCTAGAAGAAGAGTGTTTATAGTCTTAAGAAAGTTTGAAGTACTTGCAAACGCCTGTGTCATTCTCATAAGGTATTGAGATCTTACTCTCTTTATTTCTGCAGATAAAGGTTGCTGTGCAGTATATGCGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTACAGGTGCTTGAGCTCATGGTTGTCTCGAGTCTAATCCATTTGTCCTTTGAAGTTGATAAAAGCTTGTTTAATTCATGTAGTTAATTTGTTTGATAATGCACTTAATTTGGGAAAAAAACATATACTCATATAACTAAGCTGAGCATTTGAACAGGTTTTAAGTTTTTCCAACTATGGTATGTATCTGATTTGGATTGAATGGGTATTAATATTGATGTGTCAAAAATTTACTGATTCTGGCAGGTTTCTCCCAAAACATATATTCCTGCTCTCTTTGGACATGCTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCGGTACAGAATATTTTGGATATCTTTAAAGTAAGTTGTGATGTGGTGAATTGTGTGTAATCTATTATTTTTCTTTGTACAGGGTGATAAAAACATTATCAAGTTTGATGGTGACCACAATTCCTCCCGACCACAATTCTATTATGATTCAGTGTCTATTTTCTTCTACAATGTCCTCCACCCTCCTGGGATTTCACCAACTAAAAGTAAAATAGAGAAATATTACGATTTAGGGGACATCAA-GGTTGGTGCTGGAATGGATGAGGTAATTTTTCCCAGTTGTATTTTCAGACGAGTGTAAATAACTCATTAAGTTTCCTAGATTTGAATTGTTTTTTTTTTTTTAATTATTATTGTATTTACCAGATCAGCTCAATGTCTTTTGTCAATGAACAAAAGATTATATTCCTAACTAATTAGCAAGGAGAAGAAAATTCTGTTTGAACAAGAAATTCATAATTTTTTTAAAATTTTTTTGACAAGTGATGTGAAGCTCTATAGAAATAGCCAGCAAAAAGGATATGCTGGTTCAAAAGTTACATCCCAAACAAGCATTGCAATGAGTGTAACGAGCTAACAATATCAACGATGGCTACAAGACCATTTTACATCATCATTAGCCATGTTGTACCAAAAGCTAAGCAAAGAAATACATCGAGTCTTACTATTAACAATATTTCTGAGTTCTATAAAATCCTAGTGTTCCTTCCTTTCCAAATTATCCATAAGACCACAGCTGGAATGGTGTTACAAATAGACCGAGAAGACTTGTTAAGACCCGCTTTCTTCCAGTTCTGAAGAAAAAAGGGATGTGGAACTCTGTATGCACCAATAATCTTCTTGGTTTGTCTTTTGTTGGTTTAAGCGGGAGGATATTTTTGCAAGATTTTGCTGTAACTTTTTCGGCATTCTCTCCTTTCACCTAACACGACTTATGTGAGCATTGCAACATATAGTTGGTTCCGAGTCCAGATAAGTGTCACGGATTGATGGTCAACAATAATAATCTTAATATGATGAATCCTCCAAGTATTGTTATGTTCGCGAGGAAAACCTAGACATGCACCACATTAGTACCTAGATGTAGTGTTAAATAATCAATGAGGTCATCACATTGACACATGGATGTGAGGGAGTATGAGCAGTGTTTGGGACACCCGATGCAGGCTGGTTATAGAAGAAGTTCCATCACATCTATGCCAAGATTTGGTCCTACATAAGGAAGGGGTCCCACATATTAATCTTTTCAAATTCGGATGGAACAATGATTTGAATCAAAGAAGGATCGAGAATATCAAGGTATATTGTCTCCTACTTTGCCGGGTAAATCCAATTAAAATTACCATATTGCCTATACAAAGGAGAGAGTAAAGAAGCTAGCTTAAGAGTGTCAGTTTGGATAGACAGCTGGAAATTGGAATATAGTTCACTAATAAAGAAGTCAATAGAATTAGTTGATATATTAAAGAGGAGGATGGTTGATACTGATGTAAGTTATTATCAGTGTTTTGGATGGTGAAAGGCGACGAAAGGTGATAAGGGTCTGTTTTGCCGCAAGGCGAGGCACTCGCCTTTTTGAAGTGTCGCATCAATTAATAAAAAAATTAAAATAATTAATTACATATACAACCAATCAAAATCTCAATAACAATAACATATTAGCAAATATTTCAATTCAAAAACTTAAAATAGATAGTAGATACTAAAAAGTCTAGAACTTGAATGAGAAAACACAGAACAGAAGTAAATAAAAGTAACTTTGAAGTCTAAAGAAGAAGGAAAAAGAAACAGAGGAAGGAGAAAAGAAGAAGAAATACGTATTAGTTGGACTTTTTATGTCTCCGAAAAAGTCTGGATGGCTGCCGGAGAAGTCTAGTTGAGTCAACTAGTTGGAGTCATAGTCTAGGAGTGCAATTGTCCAAGTTTGGTAAGAAAACCCTATAATTGCCTTTTACCTTTAAAAACCTTCAATTGGTCGCCCTTTTTTTTTTTAAGGAAATACAAAAGGCAATGCCATTCTTACCTTTGTTGCCATCGTACCCCATGGCCTGTGTTTTGGACAGCGAGAGGCGACAAGGGCCTGCCTCGCCACACGGCGAGGCGAGCGGCGAGGCGCTTGCCTTTTTGAATTAAGCCGCCAATGAATACCAAAAATTAAAAATATTTAATTGCATATTTTAATCCAAAATCTTAATAGTAATAACAAATATTAGCAAATATTCAATTCAAAAACCAATAGTAGATACTAAAAAGGAGTCGCGCAACAGCAAATTTTGAAAATAGAAAAAAAAACCCTAATTTTGACTAATATCGTTAAGTGAAATCTTTGTAAAAAAATTAAATCAAAAAGGCGACGCCATGGGTCGCCTTTTGTATGTCGCCTCGCCTCATTGTGGAATGGCGAGAAGGGCTCGTCTCGCCTCGCCTCTCGCCTTTGGCGATGAGGCGCTCGCCATTCACAACACTGCCCATGGCATCACCTTTTGGAGATCGCCTCACCACAAAGCTAATAGGCGATGAAGGGTCGTCTCGCCTCGCCTCGTCTCAGCTCGCCTCTCGTCATTGGTGACGCGGCGATCACCTTTCACAACACTGGTTACTATATATGTGTATTACCTTGTAAAAAGAATAGTTACTATATTTCATATTTTTTAATAGTTAAGACGTTTGAAACTTCATAGTAAAAGGAAAACGGTCGGGTTGACTCTCCAAATTGTAATGGTCCATTCCTTTGGGTCAAAAGGGGTAGTTAAATTGGTGATATGGAAAATTGTATCTTGGCTAAAGAGTTTCTTGTATATGTGAGGGAGATTTTGGATAAATTTGATTGTATGATTAATTAGAAAAAATAATCACGGTCTCAAAGTTAGTTTTCTAGATTATGTCAGCTTATATGATTTTGATTAGAGAAGGGTATTTATAGGACTCACTCAATTTGACTTGCTCGGACTCTTCATTTTTGGTGCCGCACTCTTCTCGAAACGACATGGGTGTGGGATCCATGTCCGATTTGGTGTGCCGATTTTGGGTACTTTGGCCAAAATCGATTAGGAAAGTTTGGATAGTTTTAATGATTGTTGTAATCAATACAAAAGCTAAAGTGAAATGGAAGAAAATGGAATACCTTTTATATATAGATATTTCTTTGTCACTCCTTTTCCTTAATCTCCTTCCAGGATTCTCCTCAAGTTCTCTACATAATATCTTATAATTTACATTTTATAACTCCATTTTTAGATAATTAAAATATTTTTAGGCGAATCCCCGCACCCGCACCCATACATGGATCCATATCCCCGAATCTTAGAAATTACATCACGAAGAATCCAACCTCAAGATATGCACCCGTATCGGACACCTGCACCCTGAGTCCGAGCAACTTACGTAAAATGTGAAGTAAAATGACAAGGGTTTCACATATATATGTGTGTGTGTGTAATACATGTATGCTGCTTACAAGTAACTCTAGAACTTCTGTACTGCAATCACTTCATTCTTCGAGAAGTAATCGAAACTAATTTGATGTCTAACTTAGCTGTCATGAATTCTTCACATTTTTGTGTATTACTAGTAGTTCCTTCTCTATTTGACATGATTGTTAACGATATATATTTACTTAACTGTTGTGAATCATGCGGTCTGATGTACGTTTCATTTGCGGTGATCTATTCATAGAATCTCTTGTATGAGATAATTGCAACTCTTCGGAATGTTACTGCTGATACAGCAAGCTCTTCATCTGTGCCACCTAGCATTTCAACAGCTAAGTCTGCTGGCGAACTCCTTGCCGACATTGC</genome_strand>
        <mrna_strand>CTTGTCAGATGGCAACTATGTTAGTCTTGGTTGGCATGAG...............................................................................AAAGATGACCTCAAGGTAGTTGTGTCACATCTGAGAAGCAACCTGAAAGTTTCACGCATAGGTCTATGGGGACGGTCTATGGGTGCAGTTACAAG....................................................................................................................................................................CCTTCTATATGGAGCGGAAGATCCTTCTATTGCTGGAATGGTCTTGGACAGTGCCTTCTCTAACTTATTTGATCTAATGATGGAGCTTGTAGATGTCTACAAAATCAGGCTTCCTAAATTCACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGTTGCTGTGCAGTATATGCGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTACAG................................................................................................................................................................................................................................................GTTTCTCCCAAAACATATATTCCTGCTCTCTTTGGACATGCTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCG...............................................................................GGTGATAAAAACATTATCAAGTTTGATGGTGACCACAATTCCTCCCGACCACAATTCTATTATGATTCAGTGTCTATTTTCTTCTACAATGTCCTCCACCCTCCTGGGATTTCACCAACTAAAAGTAAAATAGAGAAATATTACGATTTAGGGGACATCAAGGGTTGGTGCTGGAATGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTTGTATGAGATAATTGCAACTCTTCGGAATGTTACTGCTGATACAGCAAGCTCTTCATCTGTGCCACCTAGCATTT-AACAGCTAAGTCTGCTGGCGAACTCCTTGCCGACATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241547" ref_strand="+" ref_description="SGN-E241547 [cLED-28-J24]">
      <seq>tagtcttggttggcatgagaaagatgacctcaaggtagttgtgtcacatctgagaagcaacctgaaagtttcacgcataggtctatggggacggtctatgggtgcagttacaagccttctatatggagcggaagatccttctattgctggaatggtcttggacagtgccttctctaacttatttgatctaatgatggagcttgtagatgtctacaaaatcaggcttcctaaattcaccataaaggttgctgtgcagtatatgcgacatgtcattcagaagaaggcaaagtttgatatcatgagacttaattgcttacaggtttctcccaaaacatatattcctgctctctttggacatgctaaagatgataagtttgttcagccccatcactctgatctcatttataaatcatatgcgggtgataaaaacattatcaagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="124214" stop="122044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123992" g_stop="123974" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123973" i_stop="123895" i_length="79">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123894" g_stop="123800" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="114" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123799" i_stop="123636" i_length="164">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123635" g_stop="123512" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123511" i_stop="122871" i_length="641">
            <donor d_prob="0.662" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122870" g_stop="122790" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="319" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122789" i_stop="122550" i_length="240">
            <donor d_prob="0.139" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122549" g_stop="122451" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="418" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122450" i_stop="122372" i_length="79">
            <donor d_prob="0.481" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122371" g_stop="122344" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="446" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E241547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123992" e_stop="123974"/>
          <exon e_start="123894" e_stop="123800"/>
          <exon e_start="123635" e_stop="123512"/>
          <exon e_start="122870" e_stop="122790"/>
          <exon e_start="122549" e_stop="122451"/>
          <exon e_start="122371" e_stop="122344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTGGTTGGCATGAGGTACTGCCTTTTCTTTTTCTTGCATGCATTATTTTTGTGGTGCTTGTGATATATGAATAACTCTTCGTTTGCGTATCAGAAAGATGACCTCAAGGTAGTTGTGTCACATCTGAGAAGCAACCTGAAAGTTTCACGCATAGGTCTATGGGGACGGTCTATGGGTGCAGTTACAAGGTATTTTCACTTTGCGTACTTCAATTGCTAGTAAATTTTCAATCCAAATTCTTCTGGAAAAGACAAGTTAGATTCTAGCTGACTGTTTGACTATGATTCTGATTTCTTTTTGTTTCTAAATAATTCCATGATCACAATTTTAATAATTCTGTTTAATGTACCAGCCTTCTATATGGAGCGGAAGATCCTTCTATTGCTGGAATGGTCTTGGACAGTGCCTTCTCTAACTTATTTGATCTAATGATGGAGCTTGTAGATGTCTACAAAATCAGGCTTCCTAAATTCACCGTATGGATCCCCTTCTTTTCTGTGGATGGACATCTATAACGTGATCTGAAACAAGTACTTGCATATTTATGATCTTCTTAGAGGGTGGTTAAAAAGAAATCATTTTGTATGACATCAATTTGTGCATAATTTTTTTTCATACAAGTGCATTACTATCTTGTGGGTTTTATTTCATTATATTTTGTATATATGCACTTGGTCAATTTGTTATGCATCGGGAATGTGGTTTGTTTCCCAGTTTTAGTTTGTCTTTTCCAAACAGTTGCACGGGGAAAGAAAAGGACCAAATTATGAGTTCAGAATGAACTTTTTTCATTGGCTCATTCCATATTTTCTAGGCGGAAAGGTTTAATATATTTGGCTTTACTAGTTCAAGATCATTGATGAGAATATGACTGCCGGAAATCATGTCTACTGGATAATTTACTGAAAACTATCTCTAATCGGCTGCATATAATCTGCTCTATTTGTGTCCCTTCAAGCTAAAAAATGCATATTTTGTCAAAGCTCCCTAGTGTTCATCAAACAGAAGGAGAATGCTAGAAGAAGAGTGTTTATAGTCTTAAGAAAGTTTGAAGTACTTGCAAACGCCTGTGTCATTCTCATAAGGTATTGAGATCTTACTCTCTTTATTTCTGCAGATAAAGGTTGCTGTGCAGTATATGCGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTACAGGTGCTTGAGCTCATGGTTGTCTCGAGTCTAATCCATTTGTCCTTTGAAGTTGATAAAAGCTTGTTTAATTCATGTAGTTAATTTGTTTGATAATGCACTTAATTTGGGAAAAAAACATATACTCATATAACTAAGCTGAGCATTTGAACAGGTTTTAAGTTTTTCCAACTATGGTATGTATCTGATTTGGATTGAATGGGTATTAATATTGATGTGTCAAAAATTTACTGATTCTGGCAGGTTTCTCCCAAAACATATATTCCTGCTCTCTTTGGACATGCTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCGGTACAGAATATTTTGGATATCTTTAAAGTAAGTTGTGATGTGGTGAATTGTGTGTAATCTATTATTTTTCTTTGTACAGGGTGATAAAAACATTATCAAGTTTGATG</genome_strand>
        <mrna_strand>TAGTCTTGGTTGGCATGAG...............................................................................AAAGATGACCTCAAGGTAGTTGTGTCACATCTGAGAAGCAACCTGAAAGTTTCACGCATAGGTCTATGGGGACGGTCTATGGGTGCAGTTACAAG....................................................................................................................................................................CCTTCTATATGGAGCGGAAGATCCTTCTATTGCTGGAATGGTCTTGGACAGTGCCTTCTCTAACTTATTTGATCTAATGATGGAGCTTGTAGATGTCTACAAAATCAGGCTTCCTAAATTCACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGTTGCTGTGCAGTATATGCGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTACAG................................................................................................................................................................................................................................................GTTTCTCCCAAAACATATATTCCTGCTCTCTTTGGACATGCTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCG...............................................................................GGTGATAAAAACATTATCAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327934" ref_strand="+" ref_description="SGN-E327934 [cTOC-22-H13]">
      <seq>gttcttgttaatggatcccatgaacttatcacaatcaacattgtaaactccttcttgtctctgctaatccagaaatccccatttgaaaacctccaaaatctgcaaattcagttccaattcaagcttttcaagaactaatacagcttcatttgagcgatgtgaaagagaaaagcttgtgaatttgagttatattccttgtgggttttttgctttgggtaagaaggacaaagtaaaacttgaagtgggtcgactttgaaatggtacgaaatcgagttttataatcagagattgcagtgtttttgggagtcaagaaaaaattgattttgaagtatgattgatcagttcatcaattttgttattcgtccgcccagggcagattacaatccagaccagtttttatgggagaaagagttcagtcttgggggcagaaagtacaaaagggaagactttgagcttaagaatgaaagaggtcataccttgcgatgcagtcattatactccatcatcatttcctgatggtgctcctcttccttgtgttatatactgccatggaaacagcggctgtagggctgatgcgaatgaggcagctgtaatacttctttcatcaaatatcactgtggtaacccttgacttctcgggntcaggcttgtcagatggcaactatgntagtcttggttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="127082" stop="123676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126782" g_stop="126412" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126411" i_stop="124662" i_length="1750">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124661" g_stop="124580" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="453" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124579" i_stop="124472" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124471" g_stop="124368" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="557" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124367" i_stop="124101" i_length="267">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124100" g_stop="123976" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="682" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E327934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126782" e_stop="126412"/>
          <exon e_start="124661" e_stop="124580"/>
          <exon e_start="124471" e_stop="124368"/>
          <exon e_start="124100" e_stop="123976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGTTAATGGATCCCATGAACTTATCACAATCAACATTGTAAACTCCTTCTTGTCTCTGCTAATCCAGAAATCCCCATTTGAAAACCTCCAAAATCTGCAAATTCAGTTCCAATTCAAGCTTTTCAAGAACTAATACAGCTTCATTTGAGCGATGTGAAAGAGAAAAGCTTGTGAATTTGAGTTATATTCCTTGTGGGTTTTTTGCTTTGGGTAAGAAGGACAAAGTAAAACTTGAAGTGGGTCGACTTTGAAATGGTACGAAATCGAGTTTTATAATCAGAGATTGCAGTGTTTTTGGGAGTCAAGAAAAAATTGATTTTGAAGTATGATTGATCAGTTCATCAATTTTGTTATTCGTCCGCCCAGGTTGGTATATCATCAATTCTTTTTTTTGGGTGCTTCTTTTAGGGCATTGTTTTGAGGATTAATTGAATTTAGCTCTGATTGTTGTGCGTTCTACTTGTTATTGTTTCTCCATCTGCTTAATTGGGTAATGTAGGGTTGAAATGCATAGTCCAAGTAGAATGTTCTGTTGAATTTTAGTATTTCTTTTCCCCCTTGAATTTGATCAAACTATGTGAATGCAAAGATTATATTAAGTCATATGTTGCTGTATCAGTCGGGGAAGCTTAGTTGGTTGGTTGGCTACCTGAATTTTCATCTCATTGAGGGTTCGATTCCTACCTTGTAAACCCTTCCCCATTTCCCCTACCCCATTTATTTTTAAAAATGAACAGATAAATAGAATGTAACTGTGTCAGTAGAAATGAAGAGGGAAAAGACTTATCTCAGATGGAGAAGTTCTTTTTTCTTTTCTTTATATAGCTCAATTCTTCATTTCGATCAATGGATTGGAACTTATTGCCAAAAGGTCATGCAAAATGGTACCCAAGAGTGTGGCCTAGTGGTCAATGAAGTGGGTTGATAATTACAGAGTCTTAGATTCAACTCCCAACAAGGTTCAACCCCCGCCAGAGACAAAAAAACACTAGCTTTTTGTCTATAAAAAACAAAACTAGCTGAATTCTTCTCATCTATCCGCAAGCTGGCCCGGACACCATGGTTAGCCCAAAAAGAACAGGTCATGCAAAATGAATGAGAGAAAAAGGAACACTGAGATTGGGTAGGACTTGCATATGTCTAGATATTCATATTTTCTGCCTGCTTAGGATGGAGTTCTTTTCACGATTTATACCTCTGACAAGTGATCATGATAACTATTTAGAAGCCCAAATGAAATAGTTTCTGTATTCAGTTTGTGATCTTTTTCTTTTTTGGTGAGGAGTTTGTGATCTTGTTCTGAACTTATTCTGTCTATTCTTGTTATCAAGGGAGCTACAAAGTTTTTTCTCCTCTTGCTTTCTCTAGCTATATATCATGGGATGCAAGGGGATGGTTGTGGGGGTATGGTTAGTTCCTCGACCTTCTATGCAGGAAGGCTGATTATACAGTTGTGCGGTAGAAGGGGGTGGCGGTGGGGAATGTATAGTCCCTTGACCTTCTGTGCAGCAAGGCTAGTTTAACCCTATTGGTCTATCTACCCTTGGCTTGCCGTCCGAGATTTTAATGTTTGCAGGCATGCATTTAATTAGTTGTAACCTGTGAAGTCATTTGAGCAACAAGAATATACCTATTTAATCTCACCTTTTGAATAGGGGAACTAAACATTTTCCCTTCAGCAGCTGTAATGTTTTTGCCCTAGCAAATATGCTACTGTCAGAAATTCCTTTTCCCGCATTTTGGGTTTAGAACTTCTGAAAAGTTGTTGCATGTTTTCCTGGAGATCAGACCGAGTTTCAAACAATGCACTGCCAGCTCTCAAGGGTTTCTTAGTTACTTATAAAAAAGAAGATATGCACTACTATTCATTCAGATCTGCCTGCAGTATGTTTGCTACTATTTTCCTAGGTGTGGGAGTTGTCTAATTATCCACCCCAATTCTTTTAACTAGGTCTCCAGCTTGATATATGATATACCCACCAATCCATTTTCTGTTTGGTCTTTGATGCAATAGAACCTTGTTCTATAAAGCATCAATCTACCATCGTCCGTCTGAGCTTTTGATTTGTTTGATAGTTGTTTAGAGGTTTGTCAATTGCTCTCTATTGTATAACAGGGCAGATTACAATCCAGACCAGTTTTTATGGGAGAAAGAGTTCAGTCTTGGGGGCAGAAAGTACAAAAGGGAAGACTTTGAGGCAAGTATGGTCACCTCTAACCTAAAGTGGTCACCCTTGCTCATTTGTGTAGTCATTGTCTTCTAAATAATTCGATTATCCTTGTTTCATCTATTTATTTTTTTGCAGCTTAAGAATGAAAGAGGTCATACCTTGCGATGCAGTCATTATACTCCATCATCATTTCCTGATGGTGCTCCTCTTCCTTGTGTTATATACTGCCATGGAAACAGGTTTACTGTTTGCTTTTATGACTTTTAATTCATTGACGTGAACGCTAATCTGCTTAAGTTGTGATTATCTTATGAAGAGTCGATACATTATATAGTACATTAGGTATTTAATTGCTCCACTAATCTTGTTAGGCTGTAGACCTTTTTTATATAGTCACATACATTGTAGTATGTATGAGGATTGAGTAAATATTTACTGAAATGTATTTTATGTTCTATTGTCTTATTCTCAAAATTGAGCTTTATCTTCCGTTCTGGACCCTGCAGCGGCTGTAGGGCTGATGCGAATGAGGCAGCTGTAATACTTCTTTCATCAAATATCACTGTGGTAACCCTTGACTTCTCGGGTTCAGGCTTGTCAGATGGCAACTATGTTAGTCTTGGTTGGCATG</genome_strand>
        <mrna_strand>GTTCTTGTTAATGGATCCCATGAACTTATCACAATCAACATTGTAAACTCCTTCTTGTCTCTGCTAATCCAGAAATCCCCATTTGAAAACCTCCAAAATCTGCAAATTCAGTTCCAATTCAAGCTTTTCAAGAACTAATACAGCTTCATTTGAGCGATGTGAAAGAGAAAAGCTTGTGAATTTGAGTTATATTCCTTGTGGGTTTTTTGCTTTGGGTAAGAAGGACAAAGTAAAACTTGAAGTGGGTCGACTTTGAAATGGTACGAAATCGAGTTTTATAATCAGAGATTGCAGTGTTTTTGGGAGTCAAGAAAAAATTGATTTTGAAGTATGATTGATCAGTTCATCAATTTTGTTATTCGTCCGCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGATTACAATCCAGACCAGTTTTTATGGGAGAAAGAGTTCAGTCTTGGGGGCAGAAAGTACAAAAGGGAAGACTTTGAG............................................................................................................CTTAAGAATGAAAGAGGTCATACCTTGCGATGCAGTCATTATACTCCATCATCATTTCCTGATGGTGCTCCTCTTCCTTGTGTTATATACTGCCATGGAAACAG...........................................................................................................................................................................................................................................................................CGGCTGTAGGGCTGATGCGAATGAGGCAGCTGTAATACTTCTTTCATCAAATATCACTGTGGTAACCCTTGACTTCTCGGGNTCAGGCTTGTCAGATGGCAACTATGNTAGTCTTGGTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476825" ref_strand="+" ref_description="SGN-E476825 [cSTB-46-G1]">
      <seq>ctttcttcttcttcttcttcagagttcttgctaacaatggatcccataaaattctcacaatcaacattgtaaactccttcttgtctctgctaatccagaaatccccatttgaaactctccaaaatctgcaaattcagttccaattcaagcttttcaagaactaatacagctttattgagcgatgtgaaagagaaaagattgtgaatttgagttacattttgttgtgggttttttgctttgggtaagaaggactcggtaaaacttgaagtgggtcgactttgaaatggtacgaaatcgagttttataatcagagattgcagtgtttttgggattcaagaaagagttgattttgaagtatgattgatcagttcatcaattttgttattcgtccgcccagggcagattacaatccagaccagtttttatgggagaaagagttcagtcttgggggaagaaagtacaaaagggaagactttgaggcaacttaagaatgaaagaggtcataccttgcgatgcagtcattatactccatcatcatttcctgatggtgctcctcttccttggttatatactgccatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="127073" stop="124072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126773" g_stop="126412" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="397" r_length="362" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126411" i_stop="124662" i_length="1750">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124661" g_stop="124576" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="483" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124575" i_stop="124472" i_length="104">
            <donor d_prob="0.730" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124471" g_stop="124372" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="582" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E476825" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126773" e_stop="126412"/>
          <exon e_start="124661" e_stop="124576"/>
          <exon e_start="124471" e_stop="124372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATCCCATGAACTTATCACAATCAACATTGTAAACTCCTTCTTGTCTCTGCTAATCCAGAAATCCCCATTTGAAAACCTCCAAAATCTGCAAATTCAGTTCCAATTCAAGCTTTTCAAGAACTAATACAGCTTCATTTGAGCGATGTGAAAGAGAAAAGCTTGTGAATTTGAGTTATA-TTCCTTGTGGGTTTTTTGCTTTGGGTAAGAAGGACAAAGTAAAACTTGAAGTGGGTCGACTTTGAAATGGTACGAAATCGAGTTTTATAATCAGAGATTGCAGTGTTTTTGGGAGTCAAGAAAAAATTGATTTTGAAGTATGATTGATCAGTTCATCAATTTTGTTATTCGTCCGCCCAGGTTGGTATATCATCAATTCTTTTTTTTGGGTGCTTCTTTTAGGGCATTGTTTTGAGGATTAATTGAATTTAGCTCTGATTGTTGTGCGTTCTACTTGTTATTGTTTCTCCATCTGCTTAATTGGGTAATGTAGGGTTGAAATGCATAGTCCAAGTAGAATGTTCTGTTGAATTTTAGTATTTCTTTTCCCCCTTGAATTTGATCAAACTATGTGAATGCAAAGATTATATTAAGTCATATGTTGCTGTATCAGTCGGGGAAGCTTAGTTGGTTGGTTGGCTACCTGAATTTTCATCTCATTGAGGGTTCGATTCCTACCTTGTAAACCCTTCCCCATTTCCCCTACCCCATTTATTTTTAAAAATGAACAGATAAATAGAATGTAACTGTGTCAGTAGAAATGAAGAGGGAAAAGACTTATCTCAGATGGAGAAGTTCTTTTTTCTTTTCTTTATATAGCTCAATTCTTCATTTCGATCAATGGATTGGAACTTATTGCCAAAAGGTCATGCAAAATGGTACCCAAGAGTGTGGCCTAGTGGTCAATGAAGTGGGTTGATAATTACAGAGTCTTAGATTCAACTCCCAACAAGGTTCAACCCCCGCCAGAGACAAAAAAACACTAGCTTTTTGTCTATAAAAAACAAAACTAGCTGAATTCTTCTCATCTATCCGCAAGCTGGCCCGGACACCATGGTTAGCCCAAAAAGAACAGGTCATGCAAAATGAATGAGAGAAAAAGGAACACTGAGATTGGGTAGGACTTGCATATGTCTAGATATTCATATTTTCTGCCTGCTTAGGATGGAGTTCTTTTCACGATTTATACCTCTGACAAGTGATCATGATAACTATTTAGAAGCCCAAATGAAATAGTTTCTGTATTCAGTTTGTGATCTTTTTCTTTTTTGGTGAGGAGTTTGTGATCTTGTTCTGAACTTATTCTGTCTATTCTTGTTATCAAGGGAGCTACAAAGTTTTTTCTCCTCTTGCTTTCTCTAGCTATATATCATGGGATGCAAGGGGATGGTTGTGGGGGTATGGTTAGTTCCTCGACCTTCTATGCAGGAAGGCTGATTATACAGTTGTGCGGTAGAAGGGGGTGGCGGTGGGGAATGTATAGTCCCTTGACCTTCTGTGCAGCAAGGCTAGTTTAACCCTATTGGTCTATCTACCCTTGGCTTGCCGTCCGAGATTTTAATGTTTGCAGGCATGCATTTAATTAGTTGTAACCTGTGAAGTCATTTGAGCAACAAGAATATACCTATTTAATCTCACCTTTTGAATAGGGGAACTAAACATTTTCCCTTCAGCAGCTGTAATGTTTTTGCCCTAGCAAATATGCTACTGTCAGAAATTCCTTTTCCCGCATTTTGGGTTTAGAACTTCTGAAAAGTTGTTGCATGTTTTCCTGGAGATCAGACCGAGTTTCAAACAATGCACTGCCAGCTCTCAAGGGTTTCTTAGTTACTTATAAAAAAGAAGATATGCACTACTATTCATTCAGATCTGCCTGCAGTATGTTTGCTACTATTTTCCTAGGTGTGGGAGTTGTCTAATTATCCACCCCAATTCTTTTAACTAGGTCTCCAGCTTGATATATGATATACCCACCAATCCATTTTCTGTTTGGTCTTTGATGCAATAGAACCTTGTTCTATAAAGCATCAATCTACCATCGTCCGTCTGAGCTTTTGATTTGTTTGATAGTTGTTTAGAGGTTTGTCAATTGCTCTCTATTGTATAACAGGGCAGATTACAATCCAGACCAGTTTTTATGGGAGAAAGAGTTCAGTCTTGGGGGCAGAAAGTACAAAAGGGAAGACTTTGAGGCAAGTATGGTCACCTCTAACCTAAAGTGGTCACCCTTGCTCATTTGTGTAGTCATTGTCTTCTAAATAATTCGATTATCCTTGTTTCATCTATTTATTTTTTTGCAGCTTAAGAATGAAAGAGGTCATACCTTGCGATGCAGTCATTATACTCCATCATCATTTCCTGATGGTGCTCCTCTTCCTTGTGTTATATACTGCCATGGAA</genome_strand>
        <mrna_strand>AATGGATCCCATAAAATTCTCACAATCAACATTGTAAACTCCTTCTTGTCTCTGCTAATCCAGAAATCCCCATTTGAAACTCTCCAAAATCTGCAAATTCAGTTCCAATTCAAGCTTTTCAAGAACTAATACAGCTTTA-TTGAGCGATGTGAAAGAGAAAAGATTGTGAATTTGAGTTACATTTTGTTGTGGGTTTTTTGCTTTGGGTAAGAAGGACTCGGTAAAACTTGAAGTGGGTCGACTTTGAAATGGTACGAAATCGAGTTTTATAATCAGAGATTGCAGTGTTTTTGGGATTCAAGAAAGAGTTGATTTTGAAGTATGATTGATCAGTTCATCAATTTTGTTATTCGTCCGCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGATTACAATCCAGACCAGTTTTTATGGGAGAAAGAGTTCAGTCTTGGGGGAAGAAAGTACAAAAGGGAAGACTTTGAGGCAA........................................................................................................CTTAAGAATGAAAGAGGTCATACCTTGCGATGCAGTCATTATACTCCATCATCATTTCCTGATGGTGCTCCTCTTCCTTG-GTTATATACTGCCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230266" ref_strand="-" ref_description="SGN-E230266 [cLEL-33-L22](-)">
      <seq>tttttttttttttttttagtttaatagacttttggtcaaaatcaaatttacaaaaatattgttcctctacatagtaattacattacatgagtgtaaatttagcaaaacaagctgtccaactggcttgaattacccaacaagttgttctacacttgagatagttgccattggcatctaggtttaagcaaaaataaactttttgtacaaaataaatacatcagaatgaccagctcgatcgtaagtgaggcaccaagtgatgcttatgaaatattaagttatcccttgagcatgcaaggcctgtgctggggtggaggtaagatacctgaataagcttcgcaacaatcaactgaaaatttgtaattcgctctgcttcaatncggctttttctgggcttttagtgtgtcaaatggctgattatatgctccttaagctgacatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="12667" stop="139122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138129" g_stop="138140" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.583"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138141" i_stop="138395" i_length="255">
            <donor d_prob="0.821" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138396" g_stop="138822" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="440" r_length="428" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E230266" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230266" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="138129" e_stop="138140"/>
          <exon e_start="138396" e_stop="138822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTATCTCTGTAAGGTATACAAATAATAATGCCAGCAACTACTATCGTTGCCAACTCTAAATCATGCAGTATCGCGTATACTTTAAAACAACTACATACGCTTCAGTCTCAAACAAGGTGGGGTCGATAAAATAGAAGCCTCACTGACCATGTTTTAGAAAAGGATTGTCACACTATCAAAATCATTTGCTTAACATCCTCTCCCATATCAATGGATTTAAAATTTATGAATTCAACCAAAAAAATGTCCAAAGTGACACAAAGATCTTAGTTTAATAGACTTTTGGTCAAAATCAAATTTACAAAAATATTGTTCCTCTACATAGTAATTACATTACATGAGTGTAAATTTAGCAAAACAAGCTGTCCAACTGGCTTGAATTACCCAACAAGTTGTTCTACACTTGAGATAGTTGCCATTGGCATCTAGGTTTAAGCAAAAATAAACTTTTTGTACAAAATAAATACATCAGAATGACCAGCTCGATCGTAAGTGAGGCACCAAGTGATGCTTATGAAATATTAAGTTATCCCTTGAGCATGCAAGGCCTGTGC-GGGGTGGTAGTAAGATACCTGAATAAGCTTCGCAACAATCAACTGAAAATTTGTAATTCGCTCTGCTTCAATCCGGCTTTTTCTGGGCTTTTAGTGTGTCAAATGGCTGATTATATGCTCCTTAAGCTGACATGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTT...............................................................................................................................................................................................................................................................TTTTTAGTTTAATAGACTTTTGGTCAAAATCAAATTTACAAAAATATTGTTCCTCTACATAGTAATTACATTACATGAGTGTAAATTTAGCAAAACAAGCTGTCCAACTGGCTTGAATTACCCAACAAGTTGTTCTACACTTGAGATAGTTGCCATTGGCATCTAGGTTTAAGCAAAAATAAACTTTTTGTACAAAATAAATACATCAGAATGACCAGCTCGATCGTAAGTGAGGCACCAAGTGATGCTTATGAAATATTAAGTTATCCCTTGAGCATGCAAGGCCTGTGCTGGGGTGGAGGTAAGATACCTGAATAAGCTTCGCAACAATCAACTGAAAATTTGTAATTCGCTCTGCTTCAATNCGGCTTTTTCTGGGCTTTTAGTGTGTCAAATGGCTGATTATATGCTCCTTAAGCTGACATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229986" ref_strand="-" ref_description="SGN-E229986 [cLEL-33-N22](-)">
      <seq>tttttttttttttttttagtttaatagacttttggtcaaaatcaaatttacaaaaatattgttcctctacatagtaattacattacatgagtgtaaatttagcaaaacaagctgtccaactggcttgaattacccaacaagttgttctacacttgagatagttgccattggcatctaggtttaagcaaaaataaactttttgtacaaaataaatacatcagaatgaccagctcgatcgtaagtgaggcaccaagtgatgcttatgaaatattaagttatcccttgagcatgcaaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="12667" stop="138982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138129" g_stop="138140" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.583"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138141" i_stop="138395" i_length="255">
            <donor d_prob="0.821" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138396" g_stop="138682" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="299" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-E229986" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229986" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="138129" e_stop="138140"/>
          <exon e_start="138396" e_stop="138682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTATCTCTGTAAGGTATACAAATAATAATGCCAGCAACTACTATCGTTGCCAACTCTAAATCATGCAGTATCGCGTATACTTTAAAACAACTACATACGCTTCAGTCTCAAACAAGGTGGGGTCGATAAAATAGAAGCCTCACTGACCATGTTTTAGAAAAGGATTGTCACACTATCAAAATCATTTGCTTAACATCCTCTCCCATATCAATGGATTTAAAATTTATGAATTCAACCAAAAAAATGTCCAAAGTGACACAAAGATCTTAGTTTAATAGACTTTTGGTCAAAATCAAATTTACAAAAATATTGTTCCTCTACATAGTAATTACATTACATGAGTGTAAATTTAGCAAAACAAGCTGTCCAACTGGCTTGAATTACCCAACAAGTTGTTCTACACTTGAGATAGTTGCCATTGGCATCTAGGTTTAAGCAAAAATAAACTTTTTGTACAAAATAAATACATCAGAATGACCAGCTCGATCGTAAGTGAGGCACCAAGTGATGCTTATGAAATATTAAGTTATCCCTTGAGCATGCAAGGCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTT...............................................................................................................................................................................................................................................................TTTTTAGTTTAATAGACTTTTGGTCAAAATCAAATTTACAAAAATATTGTTCCTCTACATAGTAATTACATTACATGAGTGTAAATTTAGCAAAACAAGCTGTCCAACTGGCTTGAATTACCCAACAAGTTGTTCTACACTTGAGATAGTTGCCATTGGCATCTAGGTTTAAGCAAAAATAAACTTTTTGTACAAAATAAATACATCAGAATGACCAGCTCGATCGTAAGTGAGGCACCAAGTGATGCTTATGAAATATTAAGTTATCCCTTGAGCATGCAAGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315308" ref_strand="+" ref_description="SGN-E315308 [cTOA-24-H3]">
      <seq>tgctcagctcagaggagaagaaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagcttctattctgtggcagcaatggatgggcagacagctgagcacctacgacaagcaatatgtaactactcgagggatgagatctcaacagtcatgtgtatgggacacaatagaggatgggaggaggcagcctcagtgttgtcaggtgctactgtagaactaaagacttgtaatggtgctttgcttgagccactgggaagtcgtgggaagaagcattttctctggctgggacctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144523" stop="138567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144223" g_stop="143873" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141813" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="631" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141812" i_stop="140685" i_length="1128">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140684" g_stop="140567" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="748" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140566" i_stop="138891" i_length="1676">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.828" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138890" g_stop="138867" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="773" r_length="25" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E315308" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144223" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141813"/>
          <exon e_start="140684" e_stop="140567"/>
          <exon e_start="138890" e_stop="138867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCATGTGAGTTCTCCTTCTGCTTGTGATTCTTGGTGGTGGTATTTTAGATAATGGAAGAGCATTTATAAATTGCATACAAATCTATTATGGGTGCTTCAAAAGATAAGAAATTTGCAGGACTGGAAGAGTGGAGTGCTCAAATGTTTGCTTGGATTATTGTACAAACAAATAAGTCTCACCATCAGCTGCAAATGTAAACCAGACAGGCAGCAAGTTAGTTTTGAAATCATATTATAACAGGCTAATAAAGAGGAAGGACATGAATTTTCTTCATTCCTTGATATGAGTGGTTAGGTATGTATTCGGGTGAGTCCTAGTGGTTAATGTAGTGGAGGGAGAACTATGAGGTCTTAGGTTCAAATCCTAGCGGAGGTGAAAACCACTAGATTATGTCTTCCAATCTGCCGAAGTCTTGGTTGGTTGAGTTTCAGTAACTCGATTTCTGTCCTGGTGAAAGGAAGTAGGTAGCAGGTACCCAGTGAAATGGCAGAGATAAGCGCAAGTTGTCCATGATACCACCACCATTTTGAAAAAGTGCTTAGCATACAGAGAAAGGTGTCATTTTTTAAGTACGACGTGGGAGCCATTCTTCATTGCAGGAAAAAACTTTACTATTTGTTGGTTTTGATGTGCAGGAAGACATGTGAAATGTCAGTCACTTGTTACGCTATATAAATTATGGTATACGGTATGGAGTATTTTGGGAGTTGAATTGGATTAGTCACAGAAGTGACTTGCATGGATATTCAGCTGGCAGATGTGTAGGAGGGTATAGGAGATACTCCCTAATCACTTTCTTGGATCACAAGGAATGAGAGAAACATAAAAGCATAAGAGTTAAAGAAAACCCTTTTCTACAATTGTTTCTTTTTGTACGCTTTGGAGTATAAAAGATATTTCTATCAGTAGTGATGACCAGACGGTCTTTGTAGATATTTATGTTTTTTGAAATACTTTGCTTTTGCATGCAGTTAGTGTAAAGGGTTGTCCTATTAACCTCAATACAATTATTGGATTTTTACGACCTTCTATTTTATCTCCGGTTTGAGAAATGACAGTTCATTATGTCAATTGACAGTTATTGGGTAAAGTGCTTCATAGTAAAATACTAAAATTTGATCCTCTATTCAGGTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTGAAGCCACTGGGAAGTCGTGGGAAGAGGTATTGTATCTGTAACTGCTGGTTCCATTTTACCGGTCTTACTTTGGCAATTCAATTGCATTACAGTAGCAAATGGTTGGTTGGTATACCGAGTTCCACTGTGAAATGAAATGCTATTGACCCCCAAAATAGGGCCTGTTATTACTTTGTCGTATCGTTTTACAGCCCTGCTTTCTTCTTGCCGTCGTATAAGAACGAAATTTGAACATCTGTTCCCCCTTAGCTTTTGTCATCCCAAGTTAATTCTCTCCTGTCTTAACCAGAACTCCTAACTAGCTACTTTCCTATTATAAGTCAACCAAATCTGATCTATGGTAGTGATCTGTAATTTGGTAGCTAGGAATTTCATGAACTCCATTGTTATTAGAGTGTAGAAATATTCACTTTATCTTATCAGAAAATGACAATCTGCTTTAAAGACTTCAACTATCTGTTGGTAGGTTAGTTCACGAAAATTATTGAATACCTAGCAAGCAAATGAGTATCAACTCAAACAACAACTACTCTTCAGTATCAAACAAGTTGAAATCAGCTATATGAATCCTCGCTGATTATGTTTCTCCTATTAAAATTCATATTAGCGCAATATTATACAAAATAAAAATAACAAGTACTAGAATTTCTCTATATTTTCTTTCAGTGGAAAAATCTCTACTAAGGCTAAAAGACTATAGAAATAATATTACCTAAAGTAACATACTAATATGACTGAAACGACCATTGTGCCCTACATGGATTTTGAAAGATTGTAGGCCTTTTGAGACAATTTCCTTCCGTGTTAGGTCTATCTTGTTCCACACCTTTACTCACCATGGTATCTCACCTACGGACTGGTGCATTGGGAGGTCAACGACTGGATATGACGGTCAACGACTGGATATGACCAAACTATCTTTAGCAACCTTCTCGCATTTTATCCTCACTGTGTGTTGCTAGTACCTTATAATGAATAATGAATATTGACATTTTTAATCTTGTCTAATATGGTATAACCACACATCTATTTTAGTATCACATCTCTGAGACTATCATGTGGATGTGTTGGATTTTAGTGACACAAGGCCCAACATTCACTCCTAAGAGCATATATCACAAATTGAGGGTGAACTAAAAATAGGTCCGAGTGTTTGGCTTGTGACCGAAATTTAGGGGGGCAGTGCTGGTCGATTTTTGAGTACTTTGTTCCAGATCAATGGAAAACAGTTGATTTCATACAATATTTTCTCCCATTGCTTCTATAAGGAGTCATAAATGCACGACTATGTTTTCAGACAAATGGAATATGTAAATATTACTTTCCCATCTTTCACTTTTTCCTTTTTATCTTTCTAACTGGTTCTTTGCACCCTAAAATATTGTGAAGTCTAATCATCATTTGCATTAAATGTTATGTATTGGAATTAGGTTATTACCATATCCGAATGGAAGGCAGACATTTCTAAAGAGAATAATGGCTCTTTATAGATACTTCTAATTTTGGATACAGATTCTTGAAAAGTGATCTCCAAAAACAGGAAGAGAACAACTTAAAGACGCATATTTGTCTGTGAGGAACCATATCCGAGTCTTAGATACAAAGATGATTGTGTGTGCTTTATGGAACTTTATAGCTTCATAATTCACAAAATGAAGTTTCTGAAATGTTTGATCTTCTCTAACTTAAGTGCTCTCCTCAGGCATTTTCTCTGGCT-GGACCTGGA</genome_strand>
        <mrna_strand>TGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTG-AGCCACTGGGAAGTCGTGGGAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTCTCTGGCTGGGACCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326505" ref_strand="+" ref_description="SGN-E326505 [cTOC-17-K21]">
      <seq>aaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagcttctattctgtggcagcaatggatgggcagacagctgagcacctacgacaagcaatatgtaactactcgagggatgagatctcaacagtcatgtgtatgggacacaatagaggatgggaggaggcagcctcagtgttgtcaggtgctactgtagaactaaagacttgtaatggtgctttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144503" stop="140293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144203" g_stop="143873" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="431" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141813" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="611" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141812" i_stop="140685" i_length="1128">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140684" g_stop="140593" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="703" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E326505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144203" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141813"/>
          <exon e_start="140684" e_stop="140593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCATGTGAGTTCTCCTTCTGCTTGTGATTCTTGGTGGTGGTATTTTAGATAATGGAAGAGCATTTATAAATTGCATACAAATCTATTATGGGTGCTTCAAAAGATAAGAAATTTGCAGGACTGGAAGAGTGGAGTGCTCAAATGTTTGCTTGGATTATTGTACAAACAAATAAGTCTCACCATCAGCTGCAAATGTAAACCAGACAGGCAGCAAGTTAGTTTTGAAATCATATTATAACAGGCTAATAAAGAGGAAGGACATGAATTTTCTTCATTCCTTGATATGAGTGGTTAGGTATGTATTCGGGTGAGTCCTAGTGGTTAATGTAGTGGAGGGAGAACTATGAGGTCTTAGGTTCAAATCCTAGCGGAGGTGAAAACCACTAGATTATGTCTTCCAATCTGCCGAAGTCTTGGTTGGTTGAGTTTCAGTAACTCGATTTCTGTCCTGGTGAAAGGAAGTAGGTAGCAGGTACCCAGTGAAATGGCAGAGATAAGCGCAAGTTGTCCATGATACCACCACCATTTTGAAAAAGTGCTTAGCATACAGAGAAAGGTGTCATTTTTTAAGTACGACGTGGGAGCCATTCTTCATTGCAGGAAAAAACTTTACTATTTGTTGGTTTTGATGTGCAGGAAGACATGTGAAATGTCAGTCACTTGTTACGCTATATAAATTATGGTATACGGTATGGAGTATTTTGGGAGTTGAATTGGATTAGTCACAGAAGTGACTTGCATGGATATTCAGCTGGCAGATGTGTAGGAGGGTATAGGAGATACTCCCTAATCACTTTCTTGGATCACAAGGAATGAGAGAAACATAAAAGCATAAGAGTTAAAGAAAACCCTTTTCTACAATTGTTTCTTTTTGTACGCTTTGGAGTATAAAAGATATTTCTATCAGTAGTGATGACCAGACGGTCTTTGTAGATATTTATGTTTTTTGAAATACTTTGCTTTTGCATGCAGTTAGTGTAAAGGGTTGTCCTATTAACCTCAATACAATTATTGGATTTTTACGACCTTCTATTTTATCTCCGGTTTGAGAAATGACAGTTCATTATGTCAATTGACAGTTATTGGGTAAAGTGCTTCATAGTAAAATACTAAAATTTGATCCTCTATTCAGGTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTG</genome_strand>
        <mrna_strand>AAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689218" ref_strand="+" ref_description="SGN-E689218 [t3_tus_80_J23]">
      <seq>cgtttaaacgccacaaaaagagtaaaatttatttttaggaggataatggaatctatgctaagaatccagtacgaagacagattttttcaaggattagtttttgattacagaggatccaaacaaccccttgtattctaagctacaagaaacttttagcttgaagtgcaaattaatagtatgcattattgctcagctcagaggagaagaaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacatttttatttcaagcttctattctgtggcagcaatggatgggcagacagctgagcacctacgacaagcaatatgtaactactggagggatgagatctcaacagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144704" stop="141514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144409" g_stop="143873" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="637" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141814" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="817" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E689218" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144409" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAAACGCCACAAAAAGAGTAAAATTTATTTTTAGGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACA-TTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCA</genome_strand>
        <mrna_strand>CGTTTAAACGCCACAAAAAGAGTAAAATTTATTTTTAGGAGGATAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTGGAGGGATGAGATCTCAACAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731531" ref_strand="+" ref_description="SGN-E731531 [LA27BF12]">
      <seq>ccgtatgatccaaacaaccccttgtattctaagctacaagaaacttttagcttgaagtgcaaattaatagtatgcattattgctcagctcagaggagaagaaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagcttctattctgtggcagcaatggatgggcagacagctgagcacctacgacaagcaatatgtaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144602" stop="141539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144303" g_stop="143873" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="531" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141839" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="685" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E731531" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144303" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTAC</genome_strand>
        <mrna_strand>CCGTATGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557954" ref_strand="+" ref_description="SGN-E557954 [16834]">
      <seq>gaaatttgtagttgctagccatcattttgaatgctgagtaattgaaggtaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactactactcctgtaaaaaatcccaaatcaagaaaaacccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttccacttctacagaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatattgcttcgacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggctggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagtttctattctgtggcagcaatggatgggcagacagctggagcacctacgacaagcaatatgtaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144504" stop="141540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144204" g_stop="143873" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="432" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141840" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="586" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E557954" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144204" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCT-GAGCACCTACGACAAGCAATATGTAACTA</genome_strand>
        <mrna_strand>GAAATTTGTAGTTGCTAGCCATCATTTTGAATGCTGAGTAATTGAAGGTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACTACTCCTGTAAAAAATCCCAAATCAAGAAAAACCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCCACTTCTACAGAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATATTGCTTCGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGCTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGTTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGGAGCACCTACGACAAGCAATATGTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725834" ref_strand="+" ref_description="SGN-E725834 [LA05DG01]">
      <seq>ccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaatatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcagcttctattctgtggcagcaatggatgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144483" stop="141576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144183" g_stop="143873" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="411" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141876" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="526" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E725834" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144183" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCA</genome_strand>
        <mrna_strand>CCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAAT-ATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTC-AGCTTCTATTCTGTGGCAGCAATGGATGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310484" ref_strand="+" ref_description="SGN-E310484 [cTOA-9-C23]">
      <seq>tttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144500" stop="141605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144200" g_stop="143873" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="428" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141905" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="516" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E310484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144200" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGC</genome_strand>
        <mrna_strand>TTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325802" ref_strand="+" ref_description="SGN-E325802 [cTOC-12-G8]">
      <seq>tccaaacaaccccttgtattctaagctacaagaaacttttaggttgaagtgcaaattaatagtatgcattattgctcagctcagaggagaagaaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144595" stop="141666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144295" g_stop="143873" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="523" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141966" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="550" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E325802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144295" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACT</genome_strand>
        <mrna_strand>TCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGGTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557939" ref_strand="+" ref_description="SGN-E557939 [16816]">
      <seq>atcattttgaatgctgagtaattgaaggtacaagaaaatgaatgttgtagtagcatctcttggtggaacattacaagtaccatacaactactactcctgtaaaaaatcccaaatcaagaaaaaccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttccacttctacagaaacccaaaacaacctatcgtcagttgctgctcgtcgactcatattgcttcgacatgcgaagagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144484" stop="143597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144184" g_stop="143897" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E557939" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144184" e_stop="143897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTT</genome_strand>
        <mrna_strand>ATCATTTTGAATGCTGAGTAATTGAAGGTA-CAAGAAAATGAATGTTGTAGTAGCATCTCTTGGTGGAACATTACAAGTACCATACAACTACTACTCCTGTAAAAAATCCCAAATCAAGAAAAA-CCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCCACTTCTACAGAAA-CCCAA-AACAA-CCTATCGTCAGTTGCTGCTCGTCGACTCATATTGCTTCGACATGCGAAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324855" ref_strand="+" ref_description="SGN-E324855 [cTOC-11-M18]">
      <seq>acaaacgccacaaaaagagtaaaatttgtttttatgaggaaaatggaatctatgctaagaatccagtacgaagacagattttttcaaggattagtttttgattacagaggatccaaacaaccccttgtattctaagctacaagaaacttttagcttgaagtgcaaattaatagtatgcattattgctcagctcagaggagaagaaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144706" stop="143637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144406" g_stop="143937" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E324855" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144406" e_stop="143937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGCCACAAAAAGAGTAAAATTTATTTTTAGGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTT</genome_strand>
        <mrna_strand>ACAAACGCCACAAAAAGAGTAAAATTTGTTTTTATGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238575" ref_strand="+" ref_description="SGN-E238575 [cLED-17-P11]">
      <seq>tgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaggagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagtttccagttgaagacattcttattataggaaaatcctacttgtttggagacaaatttgactccttgcaactttagctctttccaaatattacactttccaaatacaattcttgatgagtattagacttaagtcctatagaaatatgcatggtatcgtctttgtgttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="145628" stop="144317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145328" g_stop="145274" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145156" g_stop="144612" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="600" r_length="545" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E238575" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145328" e_stop="145274"/>
          <exon e_start="145156" e_stop="144612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTTTTTCCAAATATTACACTTTCCAAATACAATTCTTGATGAGTATTAGACTTAAGTCCTATAGAAATATGCATGGTATCGTCTTTGTGTTCTATTTTT</genome_strand>
        <mrna_strand>TGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTCTTTCCAAATATTACACTTTCCAAATACAATTCTTGATGAGTATTAGACTTAAGTCCTATAGAAATATGCATGGTATCGTCTTTGTGTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735398" ref_strand="+" ref_description="SGN-E735398 [LC01BG01]">
      <seq>cccctgtactaatgcacttcaccgcaacctaaggggtcattatccatggatgtccagagcatatgatccttgtaccgagaggtactctgatgtttattttaatctcccagaggtacaaaaggcattccatgctaatgtaactaagattgcctatccttggaaaacatgcagtgatatagtcggagactactgggacgattctcctttatcaatgcttcccatctaccatgagctaatagcggctggtctcaggatatgggtattcagtggcgatactgattcagttgttcctttaaccgcaactcgatattctatagatgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaggagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtaaataaaagcattccatgttaatggagtttccagttgaagacattcttattataggaaaatcctacttgtttggagacaaatttgactccttgcaactttagctttttcccaatattacactttccaattacaattcttgatgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="148231" stop="144366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147933" g_stop="147891" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147890" i_stop="146640" i_length="1251">
            <donor d_prob="0.982" d_score="0.93"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146639" g_stop="146512" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="171" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146511" i_stop="146428" i_length="84">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146427" g_stop="146332" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="267" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146331" i_stop="145380" i_length="952">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145379" g_stop="145274" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="373" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145156" g_stop="144666" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="864" r_length="491" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E735398" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147933" e_stop="147891"/>
          <exon e_start="146639" e_stop="146512"/>
          <exon e_start="146427" e_stop="146332"/>
          <exon e_start="145379" e_stop="145274"/>
          <exon e_start="145156" e_stop="144666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGTACTAATGCACTTCACCGCAACCTAAGGGGTCATTATGTGAGTCTTTACTTTTTATGCTCTCTTCTCACTCAACTTATAGATGACACATGTAGGTTATTGTAGAATATTCAGTGAAAGTCGTTAAAGAGTAATGAGATGAACTACTTGTGATAATTGCACACTTTCAAAACTTTAGTTTGCTAAAAGGACCTGACAAACATTACTGCATGCTTAAAATTTTTTTATGTGAAAGATTTGGAGTTTTAGACAATATGTTGAAAGTGTGGATACTTAGAATTGACATCTTAATCAGAAGTAGAACTGTCTTTCTGGTGCCTGACATGGCAAGTTGTTAGCTTTACCAAAATCTTACATCCATCAAAGATTCAAAAACATAACTATCTTTTCTTTTTCACCTTGTGGAAAATTTTGAAGTTCTTAATCCTTTGTCAAAAATGCATCTAGCAAAGAAATGTCCCCTTTCTCAGTGGATCAGTGTTTTATGCTGGTATCCTTCAACAGTTAAGTTACCCCAGGAAGATTGCATTTTCAATGTTCAGAGGCACTGAATGTTTATTATCTAGGTGCTTGTATTTTCATTTGAAATTCTTGTTTGGTCATGTTCGTGTATGAGAGAGAGAGAGAGAGAGCCGCAAGAATTAAAGTATCTTTATCATGTAGTGAATAACGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGATTTTTACCCTGTGCACACCCAAAGGGTAGCGGCTGCGGGTTTCCTTGTCATCAAAAAATAAAATAAAATAATATTCCTTTTTAGTGAGACACTGCTATGTAAATGGAAACTATAACTTTAGCAGGTATATTATCTTTTATTTTTCTTCAGACGGTCTATCTGTGATTTTAGGACTTACAAAGAAAGCTTCATTTAGCTTAGTGAACTCTCCCGGAGGAGTGCCTCTTCAATGTAGTTTCTCGATTGAGAGTATTTGAAGTATCATCAATTTCCCTTAAATCTCCTTCCTAACTAGTAATCCTCTTATCTTATTTTGCTAAAGTGTGTCAGATTTCTATTTGTTAAGATTGTTACCACACCTATTTCTATATGAGACTACACTGGGTATATTGTTATTTGTTGTTGTTTCCAAACCTATTTAAGTGTGAATTTTTTTAAATCATTCTGGACTTCACCGTTTAGTATTGTACATCTAATGTTGATATTTATGTCCTTATGGTAGTCCAGAAGTCCTCAATTTAATACGTGGGCGTTCAAGTTTTTAAACTTCTCTTCCTGTTTCAAAAATGTAGCCATGGATGTCCAGAGCATATGATCCTTGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAGGTCTGTTGAAAAAACTATTGAAGTTTCAAGTTTCCTATCTTCAAACTTGTTGATAACTTCTAATTGGATTTTTTCGGTTTCCAGTGATATAGTCGGAGACTACTGGGACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAGGTAAACTAAGTCGGTCCTCCTTTTGACATATTCTTTTGCCCCTCTATTTTCATTGTGTTATTGGACCCCATTTTCAAGTTTCGGTACCCTCTTTCCAAAATTAATTAACTATCTGCAGTCGGAAATGATATGAATACTACACCATATAATGGTGGTATAGTAGCCTATTCATTTATTCTCTCTCTCTCTCTCATCGGCGATTTATTATTCTTGGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTACTTCCAACTAAGTCATAGGATGAACTGATATGTTTGTGTCATCTTGAATCATCACGGTTTATGCAGAGATGACTCATTAGCACAGACAACTTTGATAATGTTTACCTTTTTCAGCTTATCTTAATCAGAATCTGATTTTCCGATCATCTAACATCCTTTGCAGTGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCTATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTTTTTCCAAATATTACACTTTCCAAATACAATTCTTGATGAGTA</genome_strand>
        <mrna_strand>CCCCTGTACTAATGCACTTCACCGCAACCTAAGGGGTCATTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGGATGTCCAGAGCATATGATCCTTGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAG....................................................................................TGATATAGTCGGAGACTACTGGGACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCTATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAAATAAAAGCATTCCATGTTAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTTTTTCCCAATATTACACTTTCCAATTACAATTCTTGATGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235482" ref_strand="+" ref_description="SGN-E235482 [cLED-11-C14]">
      <seq>tgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaggagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagtttccagttgaagacattcttattataggaaaatcctacttgcttggagacaaatttgactccttgcaactttagctttttccaaatattacactttccaaatacaaattttgatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="145628" stop="144367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145328" g_stop="145274" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145156" g_stop="144667" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="545" r_length="490" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E235482" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145328" e_stop="145274"/>
          <exon e_start="145156" e_stop="144667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTTTTTCCAAATATTACACTTTCCAAATACAATTCTTGATGAGT</genome_strand>
        <mrna_strand>TGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGCTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTTTTTCCAAATATTACACTTTCCAAATACAAATTTTGATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315066" ref_strand="+" ref_description="SGN-E315066 [cTOB-4-I10]">
      <seq>atgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaagagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagtttccagttgaagacattcttattataggaaaatcctacttgtttggagacaaatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="145629" stop="144426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145329" g_stop="145274" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145156" g_stop="144726" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="487" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E315066" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145329" e_stop="145274"/>
          <exon e_start="145156" e_stop="144726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGAC</genome_strand>
        <mrna_strand>ATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAAGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541859" ref_strand="+" ref_description="SGN-E541859 [TUS-62-N23](-)">
      <seq>ggggtcattatccatggatgtccagagcatatgatccttgtaccgagaggtactctgatgtttattttaatctcccagaggtacaaaaggcattccatgctaatgtaactaagattgcctatccttggaaaacatgcagtgatatagtcggagactactgggacgattctcctttatcaatgcttcccatctaccatgagctaatagcggctggtctcaggatatgggtattcagtggcgatactgattcagttgttcctttaaccgcaactcgatattctatagatgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaggagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagtttccagttgaagacattcttattataggaaaatcctacttgttggagaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="146945" stop="144432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146639" g_stop="146512" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="139" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146511" i_stop="146428" i_length="84">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146427" g_stop="146332" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="235" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146331" i_stop="145380" i_length="952">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145379" g_stop="145274" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="341" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145156" g_stop="144733" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="764" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="765" polyA_stop="775"/>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E541859" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146639" e_stop="146512"/>
          <exon e_start="146427" e_stop="146332"/>
          <exon e_start="145379" e_stop="145274"/>
          <exon e_start="145156" e_stop="144733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATGTCCAGAGCATATGATCCTTGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAGGTCTGTTGAAAAAACTATTGAAGTTTCAAGTTTCCTATCTTCAAACTTGTTGATAACTTCTAATTGGATTTTTTCGGTTTCCAGTGATATAGTCGGAGACTACTGGGACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAGGTAAACTAAGTCGGTCCTCCTTTTGACATATTCTTTTGCCCCTCTATTTTCATTGTGTTATTGGACCCCATTTTCAAGTTTCGGTACCCTCTTTCCAAAATTAATTAACTATCTGCAGTCGGAAATGATATGAATACTACACCATATAATGGTGGTATAGTAGCCTATTCATTTATTCTCTCTCTCTCTCTCATCGGCGATTTATTATTCTTGGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTACTTCCAACTAAGTCATAGGATGAACTGATATGTTTGTGTCATCTTGAATCATCACGGTTTATGCAGAGATGACTCATTAGCACAGACAACTTTGATAATGTTTACCTTTTTCAGCTTATCTTAATCAGAATCTGATTTTCCGATCATCTAACATCCTTTGCAGTGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCTATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAA</genome_strand>
        <mrna_strand>CCATGGATGTCCAGAGCATATGATCCTTGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAG....................................................................................TGATATAGTCGGAGACTACTGGGACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCTATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTG-TTGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346800" ref_strand="+" ref_description="SGN-E346800 [cTOF-32-I14]">
      <seq>ccaaatatacaaagggttaacccttgtaactataacaggagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagtttccagttgaagacattcttattataggaaaatcctacttgtttggagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="145442" stop="144432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145142" g_stop="144733" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E346800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145142" e_stop="144733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAA</genome_strand>
        <mrna_strand>CCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238085" ref_strand="+" ref_description="SGN-E238085 [cLED-22-A24]">
      <seq>tgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaggagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagttttcagttgaagacattcttattatatgaaaatcctacttgtttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="145628" stop="144437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145328" g_stop="145274" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145156" g_stop="144737" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="475" r_length="420" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E238085" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145328" e_stop="145274"/>
          <exon e_start="145156" e_stop="144737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAG</genome_strand>
        <mrna_strand>TGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTTCAGTTGAAGACATTCTTATTATATGAAAATCCTACTTGTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613069" ref_strand="+" ref_description="SGN-E613069 [62839]">
      <seq>gacgatctcctttgtcaatgcttcccatctaccaagagctaatagcggccggtctcaggatatgggtattcagtggcgatactgattcagttgttcctttaaccgcaactcgatattcgtatagatgcattgaagcttccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaattatacaaagggttaacccttgtaactataacaggagcagggcatgaatgtgcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcgtgttatcaaaggaccagggataatgatataatccctcatttctttcccctcgactggtatctcagtaaaggccgcgggggagattcaagattgttacacctcaataatgctttacaatggctacattagaatttccattcataaattagtttaaattcattgtatagataaaagtattccatgtaaatggagtttccagttgaagacattcttattatagggaaatcctacttgtttgtagctcttttttttggagaccaaatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="146705" stop="144437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146405" g_stop="146332" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146331" i_stop="145380" i_length="952">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145379" g_stop="145274" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="180" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145156" g_stop="144740" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="595" r_length="415" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E613069" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146405" e_stop="146332"/>
          <exon e_start="145379" e_stop="145274"/>
          <exon e_start="145156" e_stop="144740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAGGTAAACTAAGTCGGTCCTCCTTTTGACATATTCTTTTGCCCCTCTATTTTCATTGTGTTATTGGACCCCATTTTCAAGTTTCGGTACCCTCTTTCCAAAATTAATTAACTATCTGCAGTCGGAAATGATATGAATACTACACCATATAATGGTGGTATAGTAGCCTATTCATTTATTCTCTCTCTCTCTCTCATCGGCGATTTATTATTCTTGGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTACTTCCAACTAAGTCATAGGATGAACTGATATGTTTGTGTCATCTTGAATCATCACGGTTTATGCAGAGATGACTCATTAGCACAGACAACTTTGATAATGTTTACCTTTTTCAGCTTATCTTAATCAGAATCTGATTTTCCGATCATCTAACATCCTTTGCAGTGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTC-TATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAA-GTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATT-TGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTG</genome_strand>
        <mrna_strand>GACGA-TCTCCTTTGTCAATGCTTCCCATCTACCAAGAGCTAATAGCGGCCGGTCTCAGGATATGGGTATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCGTATAGATGCATTGAAGCTTCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAATTATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAATGTGCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCGTGTTATCAAAGGACCAGGGATAATGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATCTCAGTAAAGGCCGCGGGGGAGATTCAAG---ATT-GTTACACCTCAATAATGCTTTACAATGGCTACATTAGAATTTCCATTCATAAATTAGTTTAAATTCATTGTATAGATAAAAGTATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGGAAATCCTACTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575226" ref_strand="+" ref_description="SGN-E575226 [34818]">
      <seq>atgttccgcagctatctcaacttgtctaccagaggaataagggaatccagaacccaattattaatttcaagggctttatggttggaaatgctgttactgatgattaccatgactatgtcggcacgttcgagtactggtggactcatggcttgatttcggattctacgtacaagcttctacagacaacatgtgacacgggatcttctgaacatccttctgctgattgtactaaagctcttcttattgcagaacatgagcagggaaatattgacccatatagcatatatactcgtccttgtgccagtactaatgcacttcatcgcaacctaaggggtcattatccatggatgtccagagcatatgatccatgtaccgagaggtactctgatgtttattttaatctcccagaggtacaaaaggcattccatgctaatgtaactaagattgcctatccttggaaaacatgcagtgatattgtcggagactactgggacgattctcctttgtcaatgcttcccatctaccaagagctaatagcggcgggtctcaggatatgggtattcagtggcgatactgattcagttgttcctttaancgcaactcgatattctatagatgcattgaagctttcaantatcacaaactggtaccttggtatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="148614" stop="144983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148314" g_stop="148235" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148234" i_stop="148152" i_length="83">
            <donor d_prob="0.610" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148151" g_stop="147891" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="341" r_length="261" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147890" i_stop="146640" i_length="1251">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146639" g_stop="146512" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="469" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146511" i_stop="146428" i_length="84">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146427" g_stop="146332" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="565" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="146331" i_stop="145380" i_length="952">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145379" g_stop="145283" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="661" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E575226" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148314" e_stop="148235"/>
          <exon e_start="148151" e_stop="147891"/>
          <exon e_start="146639" e_stop="146512"/>
          <exon e_start="146427" e_stop="146332"/>
          <exon e_start="145379" e_stop="145283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATGGTAATAGGCTACTAGTAGTAGTTGGCGTTTTTGAGTGTTTAATGCAATATTACCGAGTCAATATCAAGTTCTGATCTTTTTAGGTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACATCCTTCCACTGATTGTACCAAAGCTCTTCTTCTTGCAGATCATGAGCAGGGAAATATTGACCCATATAGCATATATACTCGTCCTTGTGCCAGTACTAATGCACTTCACCGCAACCTAAGGGGTCATTATGTGAGTCTTTACTTTTTATGCTCTCTTCTCACTCAACTTATAGATGACACATGTAGGTTATTGTAGAATATTCAGTGAAAGTCGTTAAAGAGTAATGAGATGAACTACTTGTGATAATTGCACACTTTCAAAACTTTAGTTTGCTAAAAGGACCTGACAAACATTACTGCATGCTTAAAATTTTTTTATGTGAAAGATTTGGAGTTTTAGACAATATGTTGAAAGTGTGGATACTTAGAATTGACATCTTAATCAGAAGTAGAACTGTCTTTCTGGTGCCTGACATGGCAAGTTGTTAGCTTTACCAAAATCTTACATCCATCAAAGATTCAAAAACATAACTATCTTTTCTTTTTCACCTTGTGGAAAATTTTGAAGTTCTTAATCCTTTGTCAAAAATGCATCTAGCAAAGAAATGTCCCCTTTCTCAGTGGATCAGTGTTTTATGCTGGTATCCTTCAACAGTTAAGTTACCCCAGGAAGATTGCATTTTCAATGTTCAGAGGCACTGAATGTTTATTATCTAGGTGCTTGTATTTTCATTTGAAATTCTTGTTTGGTCATGTTCGTGTATGAGAGAGAGAGAGAGAGAGCCGCAAGAATTAAAGTATCTTTATCATGTAGTGAATAACGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGATTTTTACCCTGTGCACACCCAAAGGGTAGCGGCTGCGGGTTTCCTTGTCATCAAAAAATAAAATAAAATAATATTCCTTTTTAGTGAGACACTGCTATGTAAATGGAAACTATAACTTTAGCAGGTATATTATCTTTTATTTTTCTTCAGACGGTCTATCTGTGATTTTAGGACTTACAAAGAAAGCTTCATTTAGCTTAGTGAACTCTCCCGGAGGAGTGCCTCTTCAATGTAGTTTCTCGATTGAGAGTATTTGAAGTATCATCAATTTCCCTTAAATCTCCTTCCTAACTAGTAATCCTCTTATCTTATTTTGCTAAAGTGTGTCAGATTTCTATTTGTTAAGATTGTTACCACACCTATTTCTATATGAGACTACACTGGGTATATTGTTATTTGTTGTTGTTTCCAAACCTATTTAAGTGTGAATTTTTTTAAATCATTCTGGACTTCACCGTTTAGTATTGTACATCTAATGTTGATATTTATGTCCTTATGGTAGTCCAGAAGTCCTCAATTTAATACGTGGGCGTTCAAGTTTTTAAACTTCTCTTCCTGTTTCAAAAATGTAGCCATGGATGTCCAGAGCATATGATCCTTGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAGGTCTGTTGAAAAAACTATTGAAGTTTCAAGTTTCCTATCTTCAAACTTGTTGATAACTTCTAATTGGATTTTTTCGGTTTCCAGTGATATAGTCGGAGACTACTGGGACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAGGTAAACTAAGTCGGTCCTCCTTTTGACATATTCTTTTGCCCCTCTATTTTCATTGTGTTATTGGACCCCATTTTCAAGTTTCGGTACCCTCTTTCCAAAATTAATTAACTATCTGCAGTCGGAAATGATATGAATACTACACCATATAATGGTGGTATAGTAGCCTATTCATTTATTCTCTCTCTCTCTCTCATCGGCGATTTATTATTCTTGGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTACTTCCAACTAAGTCATAGGATGAACTGATATGTTTGTGTCATCTTGAATCATCACGGTTTATGCAGAGATGACTCATTAGCACAGACAACTTTGATAATGTTTACCTTTTTCAGCTTATCTTAATCAGAATCTGATTTTCCGATCATCTAACATCCTTTGCAGTGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCTATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGAC</genome_strand>
        <mrna_strand>ATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAATAAGGGAATCCAGAACCCAATTATTAATTTCAAGGGCTTTATG...................................................................................GTTGGAAATGCTGTTACTGATGATTACCATGACTATGTCGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACGTACAAGCTTCTACAGACAACATGTGACACGGGATCTTCTGAACATCCTTCTGCTGATTGTACTAAAGCTCTTCTTATTGCAGAACATGAGCAGGGAAATATTGACCCATATAGCATATATACTCGTCCTTGTGCCAGTACTAATGCACTTCATCGCAACCTAAGGGGTCATTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGGATGTCCAGAGCATATGATCCATGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAG....................................................................................TGATATTGTCGGAGACTACTGGGACGATTCTCCTTTGTCAATGCTTCCCATCTACCAAGAGCTAATAGCGGCGGGTCTCAGGATATGGGTATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGATACTGATTCAGTTGTTCCTTTAANCGCAACTCGATATTCTATAGATGCATTGAAGCTTTCAANTATCACAAACTGGTA-CCTTGGTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259454" ref_strand="+" ref_description="SGN-E259454 [cLEG-42-E23]">
      <seq>ggacgctaaaactagtattactaagttaagatctccctattgcatctccaacaagcacagcaaagaatggcgtttgattctgaaaatgaatctttcttatggttcaatttttttaaaaattcactgattaccattatctcatagaagagatatttacgcatgtacttatcatctaagtagttggaatttaagttcataggaagctagtgaaaagcttatactaaatgatccttgtagtttcttgttcttcgatttctattactatctgttatttcttgtacttcaactacgattattttggtgcagtagtgttactaactgtggtttttgttactatttgctggttattgtacattcattacttctttttctggactgttttgcactattatacgtccatcactgcaactatactctctttttcttaagtgtctacgaattataattgcatacagtactttttccatctttactcattatgtatagctgatttttgctggcaacattcatttggcttttcaaatgaagaatatcaagtatgaaaggggagctggaaacgtctcatattgtatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="146419" stop="145243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146119" g_stop="145543" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E259454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146119" e_stop="145543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTA</genome_strand>
        <mrna_strand>GGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736190" ref_strand="+" ref_description="SGN-E736190 [LC04CG06]">
      <seq>attacttatttgcctgggcaaccagaaaatgtacaatttagtcagtattcaggttatgtaactgtaaatcagcaagctggaagggcattgttttactggttgattgaatcaccatcgactcgtaatcctgagaaaaggccacttgttttgtggcttaatggagggccaggatgttcttctgtagcttatggagctgctgaagaaatcggcccgtttcatattaatgctgatgggaagacactttacttgaatccttactcatggaacaacttggcgaatttgctttttcttgaatcaccagctggagttggtttttcttatacaaatactacctcagatttgtatgatgctggtgatcaaagaacagctgaagatacctaccagtttgttatcaagtggtttgaaaggtttcctcagtacaagcatagagaattttacattgctggagaaagttatgcagggcattatgttccgcagctatctcaacttgtctaccagaggaacaagggaatcaagaacccaattataaatttcaagggctttatggttggaaatgctgttaccgatgattaccatgactatgttggcacgttcgagtactggtggactcatggcttgatttcggattctacatacaagcttctccagataacatgtgacacaggatcgtctgaacatccttccactgattgtaccaaagctcttcttcttgcagatcatgagcagggaaatattgacccatatagcatatatactcgtccttgtgccagtactaatgcacttcaccgcaacctaaagggtcattatccatggatgtccagagcatatgatcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="149815" stop="146313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149515" g_stop="149245" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149244" i_stop="149157" i_length="88">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149156" g_stop="149061" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="367" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148530" g_stop="148438" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="460" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148437" i_stop="148321" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148320" g_stop="148235" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="546" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148234" i_stop="148152" i_length="83">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148151" g_stop="147891" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="807" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="147890" i_stop="146640" i_length="1251">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="146639" g_stop="146610" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="837" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E736190" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149515" e_stop="149245"/>
          <exon e_start="149156" e_stop="149061"/>
          <exon e_start="148530" e_stop="148438"/>
          <exon e_start="148320" e_stop="148235"/>
          <exon e_start="148151" e_stop="147891"/>
          <exon e_start="146639" e_stop="146610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACTGTATGTGTGTTTGTTTTAAAATGATTTTTTTTGTTTTGAATAATGTTTGGTTTTCTTGTCTTTAATAATGGAATTGTGTTGTTGGCAGTGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAGGTAAGGATGATTGAGTAATTGAATGTTAGTCATTATGTTGTGTGCTTTTGATGTGAGAATCTTGAAGATTCATGGTAGGCGTTTGGACGTAAAAACCTGATATTTAAAAAGTAGTATTTGGAAAAAGTTGAAAAGAATATTTGGAAATTGAGTTGTGCTTGGAAATGCATACAACTTGCGAAAAAAGTATTTGGAAATTGAGTTGTGTTTGGATATGCATCTAGCTTGAAAAAAAGTTGAAAAAGGATATTTGGAAATCGAGTTGTGTTCGTATATGCATTTAACTTGAAAAAAAGATATTTGGACATCGAGTTGTGTTTGGATATGCATTTAACTTGAAAAAGAGTTGAAACTTTGTTAGTGGATTTTTTTAAAAATAAAATTGGTCAAAACCACTTTTACAAACTTGAACCTTGTCTCAATTTTTATTTTCTCAAGAAGTTAATCCAATGTACGAAACGGTTTTTTTTTAATGGAAATGATTATGTTGTTTAAGATGAAATGCTGAACCCTGGCCTTCCAATTTGTAGCTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAGGTATGTTTTTTCTTTTGACAAATAAAGTTATGCAAGTATGTTATAACACACTAATTACTAGTATCTATCTTTGTTATATAATAAGATACTAATTCCATTTTTCTTCCACATGTTCAGGGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATGGTAATAGGCTACTAGTAGTAGTTGGCGTTTTTGAGTGTTTAATGCAATATTACCGAGTCAATATCAAGTTCTGATCTTTTTAGGTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACATCCTTCCACTGATTGTACCAAAGCTCTTCTTCTTGCAGATCATGAGCAGGGAAATATTGACCCATATAGCATATATACTCGTCCTTGTGCCAGTACTAATGCACTTCACCGCAACCTAAGGGGTCATTATGTGAGTCTTTACTTTTTATGCTCTCTTCTCACTCAACTTATAGATGACACATGTAGGTTATTGTAGAATATTCAGTGAAAGTCGTTAAAGAGTAATGAGATGAACTACTTGTGATAATTGCACACTTTCAAAACTTTAGTTTGCTAAAAGGACCTGACAAACATTACTGCATGCTTAAAATTTTTTTATGTGAAAGATTTGGAGTTTTAGACAATATGTTGAAAGTGTGGATACTTAGAATTGACATCTTAATCAGAAGTAGAACTGTCTTTCTGGTGCCTGACATGGCAAGTTGTTAGCTTTACCAAAATCTTACATCCATCAAAGATTCAAAAACATAACTATCTTTTCTTTTTCACCTTGTGGAAAATTTTGAAGTTCTTAATCCTTTGTCAAAAATGCATCTAGCAAAGAAATGTCCCCTTTCTCAGTGGATCAGTGTTTTATGCTGGTATCCTTCAACAGTTAAGTTACCCCAGGAAGATTGCATTTTCAATGTTCAGAGGCACTGAATGTTTATTATCTAGGTGCTTGTATTTTCATTTGAAATTCTTGTTTGGTCATGTTCGTGTATGAGAGAGAGAGAGAGAGAGCCGCAAGAATTAAAGTATCTTTATCATGTAGTGAATAACGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGATTTTTACCCTGTGCACACCCAAAGGGTAGCGGCTGCGGGTTTCCTTGTCATCAAAAAATAAAATAAAATAATATTCCTTTTTAGTGAGACACTGCTATGTAAATGGAAACTATAACTTTAGCAGGTATATTATCTTTTATTTTTCTTCAGACGGTCTATCTGTGATTTTAGGACTTACAAAGAAAGCTTCATTTAGCTTAGTGAACTCTCCCGGAGGAGTGCCTCTTCAATGTAGTTTCTCGATTGAGAGTATTTGAAGTATCATCAATTTCCCTTAAATCTCCTTCCTAACTAGTAATCCTCTTATCTTATTTTGCTAAAGTGTGTCAGATTTCTATTTGTTAAGATTGTTACCACACCTATTTCTATATGAGACTACACTGGGTATATTGTTATTTGTTGTTGTTTCCAAACCTATTTAAGTGTGAATTTTTTTAAATCATTCTGGACTTCACCGTTTAGTATTGTACATCTAATGTTGATATTTATGTCCTTATGGTAGTCCAGAAGTCCTCAATTTAATACGTGGGCGTTCAAGTTTTTAAACTTCTCTTCCTGTTTCAAAAATGTAGCCATGGATGTCCAGAGCATATGATCCTTGT</genome_strand>
        <mrna_strand>ATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT........................................................................................TGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAG.....................................................................................................................GGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATG...................................................................................GTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACATCCTTCCACTGATTGTACCAAAGCTCTTCTTCTTGCAGATCATGAGCAGGGAAATATTGACCCATATAGCATATATACTCGTCCTTGTGCCAGTACTAATGCACTTCACCGCAACCTAAAGGGTCATTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGGATGTCCAGAGCATATGATCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E741015" ref_strand="+" ref_description="SGN-E741015 [LC23DH01]">
      <seq>cctttaggggtttgcctggccaaccagagaatgtacgattccgtttggattcaggttatgtaagtagtaatcagcaagctggaagggcattgttttactggttgattgaatcaccatcgactcgtaatcctgagaaaaggccacttgttttgtggcttaatggagggccaggatgttcttctgtagcttatggagctgctgaagaaatcggcccgtttcatattaatgctgatgggaagacactttacttgaatccttactcatggaacaacttggcgaatttgctttttcttgaatcaccagctggagttggtttttcttatacaaatactacctcagatttgtatgatgctggtgatcaaagaacagctgaagatacctaccagtttgttatcaagtggtttgaaaggtttcctcagtacaagcatagagaattttacattgctggagaaagttatgcagggcattatgttccgcagctatctcaacttgtctaccagaggaacaagggaatcaagaacccaattataaatttcaagggctttatggttggaaatgctgttaccgatgattaccatgactatgttggcacgttcgagtactggtggactcatggcttgatttcggattctacatacaagcttctccagataacatgtgacacaggatcgtctgaacatccttccactgattgtaccagagctcttcttcttgcagatcatgagcagggaaatattgacccatatggcagatatactcgtccttgtgccagtactaatgcacttcaccgcaacctaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="149807" stop="147598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149517" g_stop="149245" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149244" i_stop="149157" i_length="88">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149156" g_stop="149061" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="369" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148530" g_stop="148438" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="462" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148437" i_stop="148321" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148320" g_stop="148235" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="548" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148234" i_stop="148152" i_length="83">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148151" g_stop="147899" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="801" r_length="253" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E741015" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E741015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149517" e_stop="149245"/>
          <exon e_start="149156" e_stop="149061"/>
          <exon e_start="148530" e_stop="148438"/>
          <exon e_start="148320" e_stop="148235"/>
          <exon e_start="148151" e_stop="147899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACTGTATGTGTGTTTGTTTTAAAATGATTTTTTTTGTTTTGAATAATGTTTGGTTTTCTTGTCTTTAATAATGGAATTGTGTTGTTGGCAGTGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAGGTAAGGATGATTGAGTAATTGAATGTTAGTCATTATGTTGTGTGCTTTTGATGTGAGAATCTTGAAGATTCATGGTAGGCGTTTGGACGTAAAAACCTGATATTTAAAAAGTAGTATTTGGAAAAAGTTGAAAAGAATATTTGGAAATTGAGTTGTGCTTGGAAATGCATACAACTTGCGAAAAAAGTATTTGGAAATTGAGTTGTGTTTGGATATGCATCTAGCTTGAAAAAAAGTTGAAAAAGGATATTTGGAAATCGAGTTGTGTTCGTATATGCATTTAACTTGAAAAAAAGATATTTGGACATCGAGTTGTGTTTGGATATGCATTTAACTTGAAAAAGAGTTGAAACTTTGTTAGTGGATTTTTTTAAAAATAAAATTGGTCAAAACCACTTTTACAAACTTGAACCTTGTCTCAATTTTTATTTTCTCAAGAAGTTAATCCAATGTACGAAACGGTTTTTTTTTAATGGAAATGATTATGTTGTTTAAGATGAAATGCTGAACCCTGGCCTTCCAATTTGTAGCTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAGGTATGTTTTTTCTTTTGACAAATAAAGTTATGCAAGTATGTTATAACACACTAATTACTAGTATCTATCTTTGTTATATAATAAGATACTAATTCCATTTTTCTTCCACATGTTCAGGGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATGGTAATAGGCTACTAGTAGTAGTTGGCGTTTTTGAGTGTTTAATGCAATATTACCGAGTCAATATCAAGTTCTGATCTTTTTAGGTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACATCCTTCCACTGATTGTACCAAAGCTCTTCTTCTTGCAGATCATGAGCAGGGAAATATTGACCCATATAGCATATATACTCGTCCTTGTGCCAGTACTAATGCACTTCACCGCAACCTAAGGG</genome_strand>
        <mrna_strand>CCTTTAGGGGTTTGCCTGGCCAACCAGAGAATGTACGATTCCGTTTGGATTCAGGTTATGTAAGTAGTAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT........................................................................................TGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAG.....................................................................................................................GGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATG...................................................................................GTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACATCCTTCCACTGATTGTACCAGAGCTCTTCTTCTTGCAGATCATGAGCAGGGAAATATTGACCCATATGGCAGATATACTCGTCCTTGTGCCAGTACTAATGCACTTCACCGCAACCTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309473" ref_strand="+" ref_description="SGN-E309473 [cTOA-2-G8]">
      <seq>agggccaggatgttcttctgtagcttatggagctgctgaagaaatcggcccgtttcatattaatgctgatgggaagacactttacttgaatccttactcatggaacaacttggcgaatttgctttttcttgaatcaccagctggagttggtttttcttatacaaatactacctcagatttgtatgatgctggtgatcaaagaacagctgaagatacctaccagtttgttatcaagtggtttgaaaggtttcctcagtacaagcatagagaattttacattgctggagaaagttatgcagggcattatgttccgcagctatctcaacttgtctaccagaggaacaagggaatcaagaacccaattataaatttcaagggctttatggttggaaatgctgttaccgatgattaccatgactatgttggcacgttcgagtactggtggactcatggcttgatttcggattctacatacaagcttctccagataacatgtgacacaggatcgtctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="149654" stop="147721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149354" g_stop="149245" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149244" i_stop="149157" i_length="88">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149156" g_stop="149061" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="206" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148530" g_stop="148438" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="299" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148437" i_stop="148321" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148320" g_stop="148235" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="385" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148234" i_stop="148152" i_length="83">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148151" g_stop="148021" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="516" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E309473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149354" e_stop="149245"/>
          <exon e_start="149156" e_stop="149061"/>
          <exon e_start="148530" e_stop="148438"/>
          <exon e_start="148320" e_stop="148235"/>
          <exon e_start="148151" e_stop="148021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACTGTATGTGTGTTTGTTTTAAAATGATTTTTTTTGTTTTGAATAATGTTTGGTTTTCTTGTCTTTAATAATGGAATTGTGTTGTTGGCAGTGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAGGTAAGGATGATTGAGTAATTGAATGTTAGTCATTATGTTGTGTGCTTTTGATGTGAGAATCTTGAAGATTCATGGTAGGCGTTTGGACGTAAAAACCTGATATTTAAAAAGTAGTATTTGGAAAAAGTTGAAAAGAATATTTGGAAATTGAGTTGTGCTTGGAAATGCATACAACTTGCGAAAAAAGTATTTGGAAATTGAGTTGTGTTTGGATATGCATCTAGCTTGAAAAAAAGTTGAAAAAGGATATTTGGAAATCGAGTTGTGTTCGTATATGCATTTAACTTGAAAAAAAGATATTTGGACATCGAGTTGTGTTTGGATATGCATTTAACTTGAAAAAGAGTTGAAACTTTGTTAGTGGATTTTTTTAAAAATAAAATTGGTCAAAACCACTTTTACAAACTTGAACCTTGTCTCAATTTTTATTTTCTCAAGAAGTTAATCCAATGTACGAAACGGTTTTTTTTTAATGGAAATGATTATGTTGTTTAAGATGAAATGCTGAACCCTGGCCTTCCAATTTGTAGCTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAGGTATGTTTTTTCTTTTGACAAATAAAGTTATGCAAGTATGTTATAACACACTAATTACTAGTATCTATCTTTGTTATATAATAAGATACTAATTCCATTTTTCTTCCACATGTTCAGGGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATGGTAATAGGCTACTAGTAGTAGTTGGCGTTTTTGAGTGTTTAATGCAATATTACCGAGTCAATATCAAGTTCTGATCTTTTTAGGTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACA</genome_strand>
        <mrna_strand>AGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT........................................................................................TGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAG.....................................................................................................................GGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATG...................................................................................GTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252908" ref_strand="+" ref_description="SGN-E252908 [cLEG-16-N22]">
      <seq>gtaactgtaaatcagcaagctggaagggcattgttttactggttgattgaatcaccatcgactcgtaatcctgagaaaaggccacttgttttgtggcttaatggagggccaggatgttcttctgtagcttatggagctgctgaagaaatcggcccgtttcatattaatgctgatgggaagacactttacttgaatccttactcatggaacaacttggcgaatttgctttttcttgaatcaccagctggagttggtttttcttatacaaatactacctcagatttgtatgatgctggtgatcaaagaacagctgaagatacctaccagtttgttatcaagtggtttgaaaggtttcctcagtacaagcatagagaattttacattgctggagaaagttatgcagggcattatgttccgcagctatctcaacttgtctaccagaggaacaagggaatcaagaacccaattataaatttcaagggctttatggttggaaatgctgttaccgatgattacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="149758" stop="147823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149458" g_stop="149245" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149244" i_stop="149157" i_length="88">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149156" g_stop="149061" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="310" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148530" g_stop="148438" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="403" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148437" i_stop="148321" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148320" g_stop="148235" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="489" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148234" i_stop="148152" i_length="83">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148151" g_stop="148123" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="518" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E252908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149458" e_stop="149245"/>
          <exon e_start="149156" e_stop="149061"/>
          <exon e_start="148530" e_stop="148438"/>
          <exon e_start="148320" e_stop="148235"/>
          <exon e_start="148151" e_stop="148123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACTGTATGTGTGTTTGTTTTAAAATGATTTTTTTTGTTTTGAATAATGTTTGGTTTTCTTGTCTTTAATAATGGAATTGTGTTGTTGGCAGTGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAGGTAAGGATGATTGAGTAATTGAATGTTAGTCATTATGTTGTGTGCTTTTGATGTGAGAATCTTGAAGATTCATGGTAGGCGTTTGGACGTAAAAACCTGATATTTAAAAAGTAGTATTTGGAAAAAGTTGAAAAGAATATTTGGAAATTGAGTTGTGCTTGGAAATGCATACAACTTGCGAAAAAAGTATTTGGAAATTGAGTTGTGTTTGGATATGCATCTAGCTTGAAAAAAAGTTGAAAAAGGATATTTGGAAATCGAGTTGTGTTCGTATATGCATTTAACTTGAAAAAAAGATATTTGGACATCGAGTTGTGTTTGGATATGCATTTAACTTGAAAAAGAGTTGAAACTTTGTTAGTGGATTTTTTTAAAAATAAAATTGGTCAAAACCACTTTTACAAACTTGAACCTTGTCTCAATTTTTATTTTCTCAAGAAGTTAATCCAATGTACGAAACGGTTTTTTTTTAATGGAAATGATTATGTTGTTTAAGATGAAATGCTGAACCCTGGCCTTCCAATTTGTAGCTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAGGTATGTTTTTTCTTTTGACAAATAAAGTTATGCAAGTATGTTATAACACACTAATTACTAGTATCTATCTTTGTTATATAATAAGATACTAATTCCATTTTTCTTCCACATGTTCAGGGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATGGTAATAGGCTACTAGTAGTAGTTGGCGTTTTTGAGTGTTTAATGCAATATTACCGAGTCAATATCAAGTTCTGATCTTTTTAGGTTGGAAATGCTGTTACCGATGATTACCA</genome_strand>
        <mrna_strand>GTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT........................................................................................TGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAG.....................................................................................................................GGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATG...................................................................................GTTGGAAATGCTGTTACCGATGATTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401446" ref_strand="+" ref_description="SGN-E401446 [PPC-4-O13]">
      <seq>gttttgccccatgtgataaatgttcaatatcttggactaactgtacataattcttgaaaaaaaaatccaatctttgtgtttgatttgttttcagtgtgtacagattcatggataattctctgagttatgtgattttcttgtcatttttgtttgtgggtagttgttattctttctataatgtagaacaagaaaatgatagaattacttatttgcctgggcaaccagaaaatgtacaattcagtcagtattcaggttatgtaactgtaaatcagcaagctggaagggcattattttactggttgattgaatcgccatcgaatcgtaatcctgagaaaaggccacttgttttgtggcttaatggagggccaggatgttcttctgtagcttatggagctgctgaagaaatcggcccgtttcatattaatgctgatgggaagacactttacttgaatccttactcatggaacaacttggcgaatttgctttttcttatacaaatacttcctcagatttgtatgatgctggtgatcaaagaacagctgaagatacctaccagtttcttatcaagtggtttgaaaggtttcctcagtacaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="150013" stop="148172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149713" g_stop="149245" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149244" i_stop="149130" i_length="115">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149129" g_stop="149061" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="539" r_length="68" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148530" g_stop="148472" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="598" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E401446" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149713" e_stop="149245"/>
          <exon e_start="149129" e_stop="149061"/>
          <exon e_start="148530" e_stop="148472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTG--AAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACTGTATGTGTGTTTGTTTTAAAATGATTTTTTTTGTTTTGAATAATGTTTGGTTTTCTTGTCTTTAATAATGGAATTGTGTTGTTGGCAGTGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAGGTAAGGATGATTGAGTAATTGAATGTTAGTCATTATGTTGTGTGCTTTTGATGTGAGAATCTTGAAGATTCATGGTAGGCGTTTGGACGTAAAAACCTGATATTTAAAAAGTAGTATTTGGAAAAAGTTGAAAAGAATATTTGGAAATTGAGTTGTGCTTGGAAATGCATACAACTTGCGAAAAAAGTATTTGGAAATTGAGTTGTGTTTGGATATGCATCTAGCTTGAAAAAAAGTTGAAAAAGGATATTTGGAAATCGAGTTGTGTTCGTATATGCATTTAACTTGAAAAAAAGATATTTGGACATCGAGTTGTGTTTGGATATGCATTTAACTTGAAAAAGAGTTGAAACTTTGTTAGTGGATTTTTTTAAAAATAAAATTGGTCAAAACCACTTTTACAAACTTGAACCTTGTCTCAATTTTTATTTTCTCAAGAAGTTAATCCAATGTACGAAACGGTTTTTTTTTAATGGAAATGATTATGTTGTTTAAGATGAAATGCTGAACCCTGGCCTTCCAATTTGTAGCTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCAT</genome_strand>
        <mrna_strand>GTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGATAATTCTCTGAGTTATGTGATTTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTCAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTATTTTACTGGTTGATTGAATCGCCATCGAATCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT...................................................................................................................TGGC-GAATTTGCTTTTTCTTATACAAATACTTCCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGATACCTACCAGTTTCTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363878" ref_strand="+" ref_description="SGN-E363878 [cLPT-10-N18]">
      <seq>aaaatttgggattttcgttgtgtttgtgtttttttcactgtattgttttgccccatgtgataaatgttcaatatcttggactaactgtacataattcttgaaaaaaatccaatctttgtgtttgatttgttttcagtgtgtacagattcatggagaattctttgtgttatgtgatgttcttgtcatttttgtttgtgggtagttgttattctttctataatgtagaacaagaaaatgatagaattacttatttgcctgggcaaccagaaaatgtacaatttagtcagtattcaggttatgtaactgtaaatcagcaagctggaagggcattgttttactggttgattgaatcaccatcgactcgttatcctgagaaaaggccacttgttttgtggcttaatggagggccaagatgttcttctgtaacttatggagctgctgaagaaatcggcccgtttcatattaatgctgatgggaagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="150056" stop="148976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149756" g_stop="149276" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E363878" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149756" e_stop="149276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGGGATTTTTGTTGTTTTTGTG-TTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACA</genome_strand>
        <mrna_strand>AAAATTTGGGATTTTCGTTGTGTTTGTGTTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTTTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTTATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAAGATGTTCTTCTGTAACTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541862" ref_strand="+" ref_description="SGN-E541862 [TUS-62-N23]">
      <seq>attaaaaagaacatgaattgaatttcaatgtgaacattgaacgataaacaagaaatcaaaaatgacaaaagacagatatttttagtagttagatgtataaaaaatactcttatcttgtattggaagaaggcgggcgattaatttgggttgataaaaatgtcaactttcactaattagtagaaatcttggatcaaatctcttacttattattactatatactatataatttcagaatttatttagagatctgtgcatttgggtattctttagtttatattatctgggtcattctcattttgcccccatagtacttgtctccttgtttcttgaaaatcccacaaaaagttgggatttttgttgtttttgtgttttttcactgtattgttttgccccatgtgataaatgttcaatatcttggactaactgtacataattcttgaaaaaaatccaatctttgtgtttgatttgttttcagtgtgtacagattcatggagaattctctgtgttatgtgatgttcttgtcatttttgtttgtgggtagttgttattctttctataatgtagaacaagaaaatgatagaattacttatttgcctgggcaaccagaaaatgtacaatttagtcagtattcaggttatgtaactgtaaatcagcaagctggaagggcattgttttactggttgattgaatcaccatcgactcgtaatcctgagaaaaggccacttgnttttgtggncttatggagggccaggatgttcttctgtagcttatggagctgctgaagaaatcggcccgttttcatataatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="150397" stop="148987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150097" g_stop="149287" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E541862" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150097" e_stop="149287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAAGAACATGAATTGAATTTCAATGTGAACATTGAACGATAAACAAGAAATCAAAAATGACAAAAGACAGATATTTTTAGTAGTTAGATGTATAAAAAATACTCTTATCTTGTATTGGAAGAAGGCGGGCGATTAATTTGGGTTGATAAAAATGTCAACTTTCACTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATATTATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTG-TTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCG-TTTCATATTAATGCTG</genome_strand>
        <mrna_strand>ATTAAAAAGAACATGAATTGAATTTCAATGTGAACATTGAACGATAAACAAGAAATCAAAAATGACAAAAGACAGATATTTTTAGTAGTTAGATGTATAAAAAATACTCTTATCTTGTATTGGAAGAAGGCGGGCGATTAATTTGGGTTGATAAAAATGTCAACTTTCACTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATATTATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGNTTTTGTGGNCTTATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTTCATA-TAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445749" ref_strand="+" ref_description="SGN-E445749 [cSTA-18-O8]">
      <seq>ctaattagtaaaaatcttggattaaatctcttactattattactataatttcagaatttatttagagatctgtgcatttgggtattccttactttatattctgctatctgggtcattctcatcttgcccccatagtacttgtctccttgttcttgaaaatcccacaataatttgggatttttgttgtttttgtgttttttcactgcattgttttgccccatgtgataaatgttcaatatcttggactaactgtacataattcttgaaaaaaatccaatctttgtgtttgatttgttttcagtgtgtacagattcatggagaattctctgtgttatgtgattttcttgtcatttttgtttgtgggtagttgttattctttctataatgtagaacaagaaaatgatagaattacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="150192" stop="149207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149928" g_stop="149507" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E445749" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149928" e_stop="149507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATA---T--TATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTAT</genome_strand>
        <mrna_strand>CTAATTAGTAAAAATCTTGGATTAAATCTCTTAC-TATTATTACT---------ATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCCTTACTTTATATTCTGCTATCTGGGTCATTCTCATCTTGCCCCCATAGTACTTGTCTCCTTG-TTCTTGAAAATCCCACAATAATTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGCATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATTTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297025" ref_strand="+" ref_description="SGN-E297025 [cLEW-6-N3]">
      <seq>ttaaaaagaacatgaattgaatttcaatgtgaacattgaacgataaacaagaaatcaaaaatgacaaaagacagatatttttagtagttagatgtataaaaaatactcttatcttgtattggaagaaggcgggcgattaatttgggttgataaaaatgtcaactttcactaattagtagaaatcttggatcaaatctcttacttattattactatatactatataatttcagaatttatttagagatctgtgcatttgggtattctttagtttatattatctgggtcattctcattttgcccccatagtacttgtctccttgtttcttgaaaatcccacaaaaagttgggatttttgttgtttttgtgttttttcactgtattgttttgccccatgtgataaatgttcaatatcttggactaactgtacataattcttgaaaaaaatccaatctttgtgtttgatttgttttcagtgtgtacagattcatggagaattctctgtgttatgtgatgttcttgtcatttttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-FCrGQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="150396" stop="149264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150096" g_stop="149564" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-E297025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150096" e_stop="149564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAGAACATGAATTGAATTTCAATGTGAACATTGAACGATAAACAAGAAATCAAAAATGACAAAAGACAGATATTTTTAGTAGTTAGATGTATAAAAAATACTCTTATCTTGTATTGGAAGAAGGCGGGCGATTAATTTGGGTTGATAAAAATGTCAACTTTCACTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATATTATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTT</genome_strand>
        <mrna_strand>TTAAAAAGAACATGAATTGAATTTCAATGTGAACATTGAACGATAAACAAGAAATCAAAAATGACAAAAGACAGATATTTTTAGTAGTTAGATGTATAAAAAATACTCTTATCTTGTATTGGAAGAAGGCGGGCGATTAATTTGGGTTGATAAAAATGTCAACTTTCACTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATATTATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>84</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14401" PGL_stop="8540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14064" e_stop="13562"/>
            <exon e_start="11788" e_stop="9541"/>
            <exon e_start="9386" e_stop="9208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="0.924"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14064" e_stop="13562" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13561" i_stop="11789" i_length="1773"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="11788" e_stop="9541" e_length="2248"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9540" i_stop="9387" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="9386" e_stop="9208" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14064" stop="13562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13650" stop="13562"/>
              <exon start="11788" stop="11097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13596" stop="13562"/>
              <exon start="11788" stop="11505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11785" stop="11084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11784" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11389" stop="10840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="10264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="10354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10401" stop="9692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9926" stop="9541"/>
              <exon start="9386" stop="9208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAAAATAGTATTTTGGTTGACAGATGGAGGCTATAATCGTTGCAGCGGTGAGTCCGGCGGCGACAAAAGCGGTAAGCTTTCTGGTGGACAGTCTATCGCAGCTACTATCGGAAAATGTGGAACTGATTAGAGGTGCAGATAGAGATTTCCAGCGATTACTGGATGAAATTGAACCCATAAATGAGTTACTAGCAGGAGATTATGCCCAATTGAAAAGCAACAACAACGATTTGGATAAATTGTTCCAGAATATTCAACGAACGGTATATAAAGCTGAAGATGCGATCGATAAATTCCTAATTCAGGCGAAAATTGATGAAGCTAATTTTTTCAATAAGATCGGTCCGTTCGTCAAGTGGAACAACAATCGGAAGATTGCACCGGAATTCGGAAAAATTCTCGAACAAGTGACTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAG : GGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAATGTGGGGAAGCACCTTATAAACAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTAGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGTCTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGCAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCATATAATTTTATACCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCGGACCAAAAGCAAATTGACTTGTCTAATCTAGATGTCCAACTCATCCCCAGTGCCTTTCCACTAATCAGGGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCAAGATGTTTTATGGTCTATTTCACTTGAGGTATATTGCCATCAAAGGCGACTTCACTATCATTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTCGTAATGATGATACAAATACTTCAAGCTCCACCCTTGAGATAAAAGAGGACATATGGAAACTGTTACAATTGAGACATTTGCACTCCGACCTTCCTGTGAAATTGCCTCCCCCTCCTACCACAACAAGCAATAGTCGTACTTCTTGTCTACAAACTCTTTCTAAGGTTACACCAGATAGTTGCAAAAAAACTGTGTTTGCAAAGGCTTGTCATCTCAGAAAATTGGGTATTGAAGGGAAATTGGCACTTCTTCTTGGAAAAGAACGTGGATTCGACAGTTTCCAAGAGCTAAGGTGCATCGAAAAACTGAAATTGTTGAACAATGATTTTAGTGAAGAGCTTCACCTTCCTCCACACTTTTTCAGCTTACAAAAAACACTGAACAAGTTAACTTTGTCAAGTACAAGGTTCAAGTGGAGTGAGGCAGATATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCAGGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCGTTCCAAAGTCTTACGCACCTTGCTCTTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTACCTTATCTGCAAGAGATGAAGCTGACGCGCACATTCCAGGCAGTTAGTTCTGCCATAGAAATCAAAAACAAGATACTACAAAGGCAAGATCCCGAAAGCAGCATCAAATTCAATCTCATTACATTTCCCCCTACCCCGTCCACAAATTAAG : GATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAACTTTTCCAGTATTCAAGTGTTGTTACTGATAAGATTATT</gDNA_template>
            <first_frame> T  Q  N  S  I  L  V  D  R  W  R  L  *  S  L  Q  R  *  V  R  R  R  Q  K  R  *  A  F  W  W  T  V  Y  R  S  Y  Y  R  K  M  W  N  *  L  E  V  Q  I  E  I  S  S  D  Y  W  M  K  L  N  P  *  M  S  Y  *  Q  E  I  M  P  N  *  K  A  T  T  T  I  W  I  N  C  S  R  I  F  N  E  R  Y  I  K  L  K  M  R  S  I  N  S  *  F  R  R  K  L  M  K  L  I  F  S  I  R  S  V  R  S  S  S  G  T  T  I  G  R  L  H  R  N  S  E  K  F  S  N  K  *  L  K  F  A  N  R  L  N  R  F  W  R  K  P  V  Y  R  V  L  L  S  S  L  E  K  L  P  S  H  R :   V  L  L  R  R  M  S  K  W  L  V  L  I  S  L  Q  K  M  *  K  N  D  Y  V  K  D  Q  R  I  L  M  L  Y  L  L  W  V  C  Q  D  L  E  R  P  L  C  Q  E  K  F  T  M  I  L  P  L  I  F  I  F  T  T  K  Y  G  F  M  L  E  R  Q  R  N  R  R  I  F  L  L  R  L  *  K  K  S  R  K  A  I  V  R  N  *  L  K  T  R  M  R  T  N  *  L  I  S  Y  V  I  F  L  L  K  E  V  N  I  S  L  S  W  M  M  C  G  T  H  K  L  *  I  L  S  R  K  L  S  Q  T  K  N  P  G  P  E  G  I  E  L  C  *  Q  L  A  N  N  V  W  L  K  L  S  A  L  V  L  T  I  W  R  T  C  Q  K  R  I  V  *  S  C  W  N  R  E  F  L  P  I  K  G  H  V  L  L  S  Y  K  D  I  V  M  E  L  *  I  N  V  V  V  Y  R  L  P  *  W  *  F  Q  E  L  *  E  V  V  W  T  K  V  N  G  E  *  S  R  K  M  W  G  S  T  L  *  T  R  T  T  I  K  A  A  *  N  L  L  K  R  V  T  I  I  C  R  K  R  K  K  Q  P  S  C  I  L  E  Y  F  L  K  V  L  I  F  L  L  G  T  L  F  A  Y  G  L  L  R  G  *  *  S  P  V  I  K  T  V  K  S  R  R  L  Q  R  L  T  *  A  T  L  L  V  G  I  *  *  W  *  C  K  R  D  L  T  V  K  S  K  H  V  V  S  M  T  C  C  M  S  S  A  L  L  R  L  Q  G  *  V  S  F  N  K  Y  I  S  N  L  V  F  E  F  F  L  L  *  K  I  Q  I  L  L  V  D  Y  V  F  N  P  L  F  H  I  I  L  Y  L  K  I  E  L  Y  S  M  L  G  L  S  Y  V  F  P  R  T  K  S  K  L  T  C  L  I  *  M  S  N  S  S  P  V  P  F  H  *  S  G  C  W  T  F  N  P  S  Y  L  N  S  P  R  C  F  M  V  Y  F  T  *  G  I  L  P  S  K  A  T  S  L  S  F  L  H  S  S  V  I  F  G  I  Y  K  P  L  Y  F  V  M  M  I  Q  I  L  Q  A  P  P  L  R  *  K  R  T  Y  G  N  C  Y  N  *  D  I  C  T  P  T  F  L  *  N  C  L  P  L  L  P  Q  Q  A  I  V  V  L  L  V  Y  K  L  F  L  R  L  H  Q  I  V  A  K  K  L  C  L  Q  R  L  V  I  S  E  N  W  V  L  K  G  N  W  H  F  F  L  E  K  N  V  D  S  T  V  S  K  S  *  G  A  S  K  N  *  N  C  *  T  M  I  L  V  K  S  F  T  F  L  H  T  F  S  A  Y  K  K  H  *  T  S  *  L  C  Q  V  Q  G  S  S  G  V  R  Q  I  C  W  G  S  W  N  A  L  R  Y  *  N  *  K  R  M  H  S  Q  G  R  S  G  S  P  R  K  E  V  L  A  S  S  K  S  C  T  L  S  G  Q  E  S  G  K  L  G  M  H  Q  I  V  R  S  K  V  L  R  T  L  L  L  F  P  V  M  I  S  R  L  C  H  T  S  W  L  I  Y  L  I  C  K  R  *  S  *  R  A  H  S  R  Q  L  V  L  P  *  K  S  K  T  R  Y  Y  K  G  K  I  P  K  A  A  S  N  S  I  S  L  H  F  P  L  P  R  P  Q  I  K  :  D  *  I  M  S  W  R  S  L  A  D  H  L  S  A  V  H  S  N  E  T  N  L  L  S  F  K  Y  C  D  S  S  K  *  V  *  L  R  L  C  V  S  N  F  L  *  N  F  S  S  I  Q  V  L  L  L  I  R  L   </first_frame>
            <second_frame>  H  K  I  V  F  W  L  T  D  G  G  Y  N  R  C  S  G  E  S  G  G  D  K  S  G  K  L  S  G  G  Q  S  I  A  A  T  I  G  K  C  G  T  D  *  R  C  R  *  R  F  P  A  I  T  G  *  N  *  T  H  K  *  V  T  S  R  R  L  C  P  I  E  K  Q  Q  Q  R  F  G  *  I  V  P  E  Y  S  T  N  G  I  *  S  *  R  C  D  R  *  I  P  N  S  G  E  N  *  *  S  *  F  F  Q  *  D  R  S  V  R  Q  V  E  Q  Q  S  E  D  C  T  G  I  R  K  N  S  R  T  S  D  *  N  S  Q  T  D  S  T  G  F  G  E  N  R  Y  T  E  F  C  F  P  A  W  R  N  Y  P  A  T   : G  S  C  *  G  G  C  R  S  G  W  F  *  *  A  C  R  R  C  E  R  T  T  M  *  R  I  K  G  S  *  C  Y  T  Y  C  G  Y  A  R  T  W  K  D  H  S  V  K  K  S  L  Q  *  F  F  P  *  F  L  F  L  P  Q  N  M  D  L  C  W  N  V  K  E  T  E  G  Y  S  C  *  D  C  K  R  S  R  A  K  Q  *  *  G  T  N  *  R  Q  G  *  G  P  I  S  S  Y  H  T  *  F  S  C  *  K  R  *  T  S  H  C  L  G  *  C  V  G  H  T  S  C  R  F  C  Q  E  S  F  P  K  Q  K  I  P  A  P  R  G  *  N  Y  V  D  N  S  P  T  T  C  G  *  S  C  Q  R  S  S  S  L  S  G  E  L  V  K  R  G  *  Y  K  V  V  G  T  E  S  F  C  Q  *  K  D  M  S  Y  *  V  T  R  I  S  *  W  N  C  R  *  M  L  W  C  T  A  C  H  S  G  D  F  R  S  F  E  R  L  Y  G  R  K  *  M  E  S  S  R  G  K  C  G  E  A  P  Y  K  Q  G  R  P  *  K  L  L  E  I  C  *  N  E  L  Q  S  F  A  A  R  E  K  S  S  L  L  V  F  W  S  I  S  S  R  F  *  Y  S  C  L  E  P  Y  S  L  M  G  C  *  G  A  N  K  V  R  S  *  R  Q  *  N  R  E  G  C  R  D  L  L  E  R  L  C  *  *  E  F  S  D  G  D  A  K  E  I  *  R  S  N  Q  N  M  S  S  P  *  H  V  A  *  V  L  H  Y  *  G  C  K  D  K  S  L  S  T  S  I  S  P  T  W  C  S  S  F  S  F  Y  R  R  S  K  Y  F  S  S  I  M  Y  S  I  L  Y  S  I  *  F  Y  T  *  R  *  N  C  T  A  C  *  V  S  L  M  F  F  L  G  P  K  A  N  *  L  V  *  S  R  C  P  T  H  P  Q  C  L  S  T  N  Q  G  V  G  H  S  I  P  H  I  *  I  L  Q  D  V  L  W  S  I  S  L  E  V  Y  C  H  Q  R  R  L  H  Y  H  S  F  T  L  P  *  F  L  V  F  T  N  P  Y  T  S  *  *  *  Y  K  Y  F  K  L  H  P  *  D  K  R  G  H  M  E  T  V  T  I  E  T  F  A  L  R  P  S  C  E  I  A  S  P  S  Y  H  N  K  Q  *  S  Y  F  L  S  T  N  S  F  *  G  Y  T  R  *  L  Q  K  N  C  V  C  K  G  L  S  S  Q  K  I  G  Y  *  R  E  I  G  T  S  S  W  K  R  T  W  I  R  Q  F  P  R  A  K  V  H  R  K  T  E  I  V  E  Q  *  F  *  *  R  A  S  P  S  S  T  L  F  Q  L  T  K  N  T  E  Q  V  N  F  V  K  Y  K  V  Q  V  E  *  G  R  Y  V  G  A  V  G  M  P  *  G  T  E  I  E  R  E  C  I  H  R  E  E  V  E  A  Q  E  R  K  F  *  Q  A  P  S  P  A  H  C  L  G  R  R  V  G  N  L  G  C  I  K  S  S  V  P  K  S  Y  A  P  C  S  Y  F  L  L  *  S  Q  G  C  A  T  R  A  G  *  F  T  L  S  A  R  D  E  A  D  A  H  I  P  G  S  *  F  C  H  R  N  Q  K  Q  D  T  T  K  A  R  S  R  K  Q  H  Q  I  Q  S  H  Y  I  S  P  Y  P  V  H  K  L  R :   I  E  L  C  H  G  V  P  S  R  I  I  F  L  Q  S  I  P  T  K  Q  T  C  C  L  S  S  I  V  I  L  Q  N  K  F  N  *  D  Y  A  F  L  I  S  C  K  T  F  P  V  F  K  C  C  Y  *  *  D  Y  </second_frame>
            <third_frame>   T  K  *  Y  F  G  *  Q  M  E  A  I  I  V  A  A  V  S  P  A  A  T  K  A  V  S  F  L  V  D  S  L  S  Q  L  L  S  E  N  V  E  L  I  R  G  A  D  R  D  F  Q  R  L  L  D  E  I  E  P  I  N  E  L  L  A  G  D  Y  A  Q  L  K  S  N  N  N  D  L  D  K  L  F  Q  N  I  Q  R  T  V  Y  K  A  E  D  A  I  D  K  F  L  I  Q  A  K  I  D  E  A  N  F  F  N  K  I  G  P  F  V  K  W  N  N  N  R  K  I  A  P  E  F  G  K  I  L  E  Q  V  T  E  I  R  K  Q  T  Q  Q  V  L  E  K  T  G  I  Q  S  S  A  F  Q  P  G  E  T  T  Q  P  Q  :  G  P  A  E  E  D  V  E  V  V  G  F  N  K  P  A  E  D  V  K  E  R  L  C  E  G  S  K  D  L  D  V  I  P  I  V  G  M  P  G  L  G  K  T  T  L  S  R  K  V  Y  N  D  S  S  L  D  F  Y  F  Y  H  K  I  W  I  Y  V  G  T  S  K  K  P  K  D  I  L  V  E  I  V  K  E  V  A  Q  S  N  S  K  E  L  I  K  D  K  D  E  D  Q  L  A  H  I  I  R  D  F  L  V  E  R  G  K  H  L  I  V  L  D  D  V  W  D  T  Q  V  V  D  F  V  K  K  A  F  P  N  K  K  S  R  P  R  G  D  R  I  M  L  T  T  R  Q  Q  R  V  A  E  A  V  S  A  R  P  H  Y  L  E  N  L  S  K  E  D  S  I  K  L  L  E  Q  R  V  F  A  N  K  R  T  C  P  I  E  L  Q  G  Y  R  D  G  I  V  D  K  C  C  G  V  P  L  A  I  V  V  I  S  G  A  L  R  G  C  M  D  E  S  E  W  R  V  V  E  E  N  V  G  K  H  L  I  N  K  D  D  H  K  S  C  L  K  F  V  E  T  S  Y  N  H  L  P  Q  E  K  K  A  A  F  L  Y  F  G  V  F  P  Q  G  F  D  I  P  A  W  N  L  I  R  L  W  V  A  E  G  L  I  K  S  G  H  K  D  S  E  I  E  K  V  A  E  T  Y  L  S  D  F  A  S  R  N  L  V  M  V  M  Q  K  R  S  N  G  Q  I  K  T  C  R  L  H  D  M  L  H  E  F  C  I  I  E  A  A  R  I  S  L  F  Q  Q  V  Y  L  Q  P  G  V  R  V  F  P  S  I  E  D  P  N  T  S  R  R  L  C  I  Q  S  S  I  P  Y  N  F  I  P  K  D  R  I  V  Q  H  V  R  S  L  L  C  F  S  S  D  Q  K  Q  I  D  L  S  N  L  D  V  Q  L  I  P  S  A  F  P  L  I  R  V  L  D  I  Q  S  L  I  F  E  F  S  K  M  F  Y  G  L  F  H  L  R  Y  I  A  I  K  G  D  F  T  I  I  P  S  L  F  R  N  F  W  Y  L  Q  T  L  I  L  R  N  D  D  T  N  T  S  S  S  T  L  E  I  K  E  D  I  W  K  L  L  Q  L  R  H  L  H  S  D  L  P  V  K  L  P  P  P  P  T  T  T  S  N  S  R  T  S  C  L  Q  T  L  S  K  V  T  P  D  S  C  K  K  T  V  F  A  K  A  C  H  L  R  K  L  G  I  E  G  K  L  A  L  L  L  G  K  E  R  G  F  D  S  F  Q  E  L  R  C  I  E  K  L  K  L  L  N  N  D  F  S  E  E  L  H  L  P  P  H  F  F  S  L  Q  K  T  L  N  K  L  T  L  S  S  T  R  F  K  W  S  E  A  D  M  L  G  Q  L  E  C  L  K  V  L  K  L  K  E  N  A  F  T  G  K  K  W  K  P  K  K  G  S  F  S  K  L  Q  V  L  H  I  V  W  A  G  E  W  E  T  W  D  A  S  N  R  P  F  Q  S  L  T  H  L  A  L  I  S  C  Y  D  L  K  A  V  P  H  E  L  A  D  L  P  Y  L  Q  E  M  K  L  T  R  T  F  Q  A  V  S  S  A  I  E  I  K  N  K  I  L  Q  R  Q  D  P  E  S  S  I  K  F  N  L  I  T  F  P  P  T  P  S  T  N  *   : G  L  N  Y  V  M  A  F  P  R  G  S  S  F  C  S  P  F  Q  R  N  K  P  V  V  F  Q  V  L  *  F  F  K  I  S  L  I  K  I  M  R  F  *  F  L  V  K  L  F  Q  Y  S  S  V  V  T  D  K  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14041" stop="13562"/>
                    <exon start="11788" stop="9542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2724</number_coding_nucleotides>
                  <number_encoded_amino_acids>908</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMEAIIVAAVSPAATKAVSFLVDSLSQLLSENVELIRGADRDFQRLLDEIEPINELLAGDYAQLKSNNNDLDKLFQNIQRTVYKAEDAIDKFLIQAKIDEANFFNKIGPFVKWNNNRKIAPEFGKILEQVTEIRKQTQQVLEKTGIQSSAFQPGETTQPQGPAEEDVEVVGFNKPAEDVKERLCEGSKDLDVIPIVGMPGLGKTTLSRKVYNDSSLDFYFYHKIWIYVGTSKKPKDILVEIVKEVAQSNSKELIKDKDEDQLAHIIRDFLVERGKHLIVLDDVWDTQVVDFVKKAFPNKKSRPRGDRIMLTTRQQRVAEAVSARPHYLENLSKEDSIKLLEQRVFANKRTCPIELQGYRDGIVDKCCGVPLAIVVISGALRGCMDESEWRVVEENVGKHLINKDDHKSCLKFVETSYNHLPQEKKAAFLYFGVFPQGFDIPAWNLIRLWVAEGLIKSGHKDSEIEKVAETYLSDFASRNLVMVMQKRSNGQIKTCRLHDMLHEFCIIEAARISLFQQVYLQPGVRVFPSIEDPNTSRRLCIQSSIPYNFIPKDRIVQHVRSLLCFSSDQKQIDLSNLDVQLIPSAFPLIRVLDIQSLIFEFSKMFYGLFHLRYIAIKGDFTIIPSLFRNFWYLQTLILRNDDTNTSSSTLEIKEDIWKLLQLRHLHSDLPVKLPPPPTTTSNSRTSCLQTLSKVTPDSCKKTVFAKACHLRKLGIEGKLALLLGKERGFDSFQELRCIEKLKLLNNDFSEELHLPPHFFSLQKTLNKLTLSSTRFKWSEADMLGQLECLKVLKLKENAFTGKKWKPKKGSFSKLQVLHIVWAGEWETWDASNRPFQSLTHLALISCYDLKAVPHELADLPYLQEMKLTRTFQAVSSAIEIKNKILQRQDPESSIKFNLITFPPTPSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14401" e_stop="14350"/>
            <exon e_start="14053" e_stop="13562"/>
            <exon e_start="11788" e_stop="9541"/>
            <exon e_start="9386" e_stop="9208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.676" e_score="0.981"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="0.924"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="14401" e_stop="14350" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.676">
            <gDNA_intron_boundary i_start="14349" i_stop="14054" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14053" e_stop="13562" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13561" i_stop="11789" i_length="1773"/>
          </intron>
          <exon e_serial="3" e_score="0.924">
            <gDNA_exon_boundary e_start="11788" e_stop="9541" e_length="2248"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9540" i_stop="9387" i_length="154"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="9386" e_stop="9208" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14401" stop="14350"/>
              <exon start="14053" stop="13591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13650" stop="13562"/>
              <exon start="11788" stop="11097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13596" stop="13562"/>
              <exon start="11788" stop="11505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11785" stop="11084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11784" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11389" stop="10840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="10264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="10354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10401" stop="9692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9926" stop="9541"/>
              <exon start="9386" stop="9208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATCGAAGTAGATTTATTGAAAACAATATTTTTATCTGTCAACGTGGAG : TATTTTGGTTGACAGATGGAGGCTATAATCGTTGCAGCGGTGAGTCCGGCGGCGACAAAAGCGGTAAGCTTTCTGGTGGACAGTCTATCGCAGCTACTATCGGAAAATGTGGAACTGATTAGAGGTGCAGATAGAGATTTCCAGCGATTACTGGATGAAATTGAACCCATAAATGAGTTACTAGCAGGAGATTATGCCCAATTGAAAAGCAACAACAACGATTTGGATAAATTGTTCCAGAATATTCAACGAACGGTATATAAAGCTGAAGATGCGATCGATAAATTCCTAATTCAGGCGAAAATTGATGAAGCTAATTTTTTCAATAAGATCGGTCCGTTCGTCAAGTGGAACAACAATCGGAAGATTGCACCGGAATTCGGAAAAATTCTCGAACAAGTGACTGAAATTCGCAAACAGACTCAACAGGTTTTGGAGAAAACCGGTATACAGAGTTCTGCTTTCCAGCCTGGAGAAACTACCCAGCCACAG : GGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAATGTGGGGAAGCACCTTATAAACAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTAGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGTCTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGCAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCATATAATTTTATACCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCGGACCAAAAGCAAATTGACTTGTCTAATCTAGATGTCCAACTCATCCCCAGTGCCTTTCCACTAATCAGGGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCAAGATGTTTTATGGTCTATTTCACTTGAGGTATATTGCCATCAAAGGCGACTTCACTATCATTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTCGTAATGATGATACAAATACTTCAAGCTCCACCCTTGAGATAAAAGAGGACATATGGAAACTGTTACAATTGAGACATTTGCACTCCGACCTTCCTGTGAAATTGCCTCCCCCTCCTACCACAACAAGCAATAGTCGTACTTCTTGTCTACAAACTCTTTCTAAGGTTACACCAGATAGTTGCAAAAAAACTGTGTTTGCAAAGGCTTGTCATCTCAGAAAATTGGGTATTGAAGGGAAATTGGCACTTCTTCTTGGAAAAGAACGTGGATTCGACAGTTTCCAAGAGCTAAGGTGCATCGAAAAACTGAAATTGTTGAACAATGATTTTAGTGAAGAGCTTCACCTTCCTCCACACTTTTTCAGCTTACAAAAAACACTGAACAAGTTAACTTTGTCAAGTACAAGGTTCAAGTGGAGTGAGGCAGATATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCAGGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCGTTCCAAAGTCTTACGCACCTTGCTCTTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTACCTTATCTGCAAGAGATGAAGCTGACGCGCACATTCCAGGCAGTTAGTTCTGCCATAGAAATCAAAAACAAGATACTACAAAGGCAAGATCCCGAAAGCAGCATCAAATTCAATCTCATTACATTTCCCCCTACCCCGTCCACAAATTAAG : GATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAACTTTTCCAGTATTCAAGTGTTGTTACTGATAAGATTATT</gDNA_template>
            <first_frame> L  N  R  S  R  F  I  E  N  N  I  F  I  C  Q  R  G   : V  F  W  L  T  D  G  G  Y  N  R  C  S  G  E  S  G  G  D  K  S  G  K  L  S  G  G  Q  S  I  A  A  T  I  G  K  C  G  T  D  *  R  C  R  *  R  F  P  A  I  T  G  *  N  *  T  H  K  *  V  T  S  R  R  L  C  P  I  E  K  Q  Q  Q  R  F  G  *  I  V  P  E  Y  S  T  N  G  I  *  S  *  R  C  D  R  *  I  P  N  S  G  E  N  *  *  S  *  F  F  Q  *  D  R  S  V  R  Q  V  E  Q  Q  S  E  D  C  T  G  I  R  K  N  S  R  T  S  D  *  N  S  Q  T  D  S  T  G  F  G  E  N  R  Y  T  E  F  C  F  P  A  W  R  N  Y  P  A  T   : G  S  C  *  G  G  C  R  S  G  W  F  *  *  A  C  R  R  C  E  R  T  T  M  *  R  I  K  G  S  *  C  Y  T  Y  C  G  Y  A  R  T  W  K  D  H  S  V  K  K  S  L  Q  *  F  F  P  *  F  L  F  L  P  Q  N  M  D  L  C  W  N  V  K  E  T  E  G  Y  S  C  *  D  C  K  R  S  R  A  K  Q  *  *  G  T  N  *  R  Q  G  *  G  P  I  S  S  Y  H  T  *  F  S  C  *  K  R  *  T  S  H  C  L  G  *  C  V  G  H  T  S  C  R  F  C  Q  E  S  F  P  K  Q  K  I  P  A  P  R  G  *  N  Y  V  D  N  S  P  T  T  C  G  *  S  C  Q  R  S  S  S  L  S  G  E  L  V  K  R  G  *  Y  K  V  V  G  T  E  S  F  C  Q  *  K  D  M  S  Y  *  V  T  R  I  S  *  W  N  C  R  *  M  L  W  C  T  A  C  H  S  G  D  F  R  S  F  E  R  L  Y  G  R  K  *  M  E  S  S  R  G  K  C  G  E  A  P  Y  K  Q  G  R  P  *  K  L  L  E  I  C  *  N  E  L  Q  S  F  A  A  R  E  K  S  S  L  L  V  F  W  S  I  S  S  R  F  *  Y  S  C  L  E  P  Y  S  L  M  G  C  *  G  A  N  K  V  R  S  *  R  Q  *  N  R  E  G  C  R  D  L  L  E  R  L  C  *  *  E  F  S  D  G  D  A  K  E  I  *  R  S  N  Q  N  M  S  S  P  *  H  V  A  *  V  L  H  Y  *  G  C  K  D  K  S  L  S  T  S  I  S  P  T  W  C  S  S  F  S  F  Y  R  R  S  K  Y  F  S  S  I  M  Y  S  I  L  Y  S  I  *  F  Y  T  *  R  *  N  C  T  A  C  *  V  S  L  M  F  F  L  G  P  K  A  N  *  L  V  *  S  R  C  P  T  H  P  Q  C  L  S  T  N  Q  G  V  G  H  S  I  P  H  I  *  I  L  Q  D  V  L  W  S  I  S  L  E  V  Y  C  H  Q  R  R  L  H  Y  H  S  F  T  L  P  *  F  L  V  F  T  N  P  Y  T  S  *  *  *  Y  K  Y  F  K  L  H  P  *  D  K  R  G  H  M  E  T  V  T  I  E  T  F  A  L  R  P  S  C  E  I  A  S  P  S  Y  H  N  K  Q  *  S  Y  F  L  S  T  N  S  F  *  G  Y  T  R  *  L  Q  K  N  C  V  C  K  G  L  S  S  Q  K  I  G  Y  *  R  E  I  G  T  S  S  W  K  R  T  W  I  R  Q  F  P  R  A  K  V  H  R  K  T  E  I  V  E  Q  *  F  *  *  R  A  S  P  S  S  T  L  F  Q  L  T  K  N  T  E  Q  V  N  F  V  K  Y  K  V  Q  V  E  *  G  R  Y  V  G  A  V  G  M  P  *  G  T  E  I  E  R  E  C  I  H  R  E  E  V  E  A  Q  E  R  K  F  *  Q  A  P  S  P  A  H  C  L  G  R  R  V  G  N  L  G  C  I  K  S  S  V  P  K  S  Y  A  P  C  S  Y  F  L  L  *  S  Q  G  C  A  T  R  A  G  *  F  T  L  S  A  R  D  E  A  D  A  H  I  P  G  S  *  F  C  H  R  N  Q  K  Q  D  T  T  K  A  R  S  R  K  Q  H  Q  I  Q  S  H  Y  I  S  P  Y  P  V  H  K  L  R :   I  E  L  C  H  G  V  P  S  R  I  I  F  L  Q  S  I  P  T  K  Q  T  C  C  L  S  S  I  V  I  L  Q  N  K  F  N  *  D  Y  A  F  L  I  S  C  K  T  F  P  V  F  K  C  C  Y  *  *  D  Y  </first_frame>
            <second_frame>  *  I  E  V  D  L  L  K  T  I  F  L  S  V  N  V  E  :  Y  F  G  *  Q  M  E  A  I  I  V  A  A  V  S  P  A  A  T  K  A  V  S  F  L  V  D  S  L  S  Q  L  L  S  E  N  V  E  L  I  R  G  A  D  R  D  F  Q  R  L  L  D  E  I  E  P  I  N  E  L  L  A  G  D  Y  A  Q  L  K  S  N  N  N  D  L  D  K  L  F  Q  N  I  Q  R  T  V  Y  K  A  E  D  A  I  D  K  F  L  I  Q  A  K  I  D  E  A  N  F  F  N  K  I  G  P  F  V  K  W  N  N  N  R  K  I  A  P  E  F  G  K  I  L  E  Q  V  T  E  I  R  K  Q  T  Q  Q  V  L  E  K  T  G  I  Q  S  S  A  F  Q  P  G  E  T  T  Q  P  Q  :  G  P  A  E  E  D  V  E  V  V  G  F  N  K  P  A  E  D  V  K  E  R  L  C  E  G  S  K  D  L  D  V  I  P  I  V  G  M  P  G  L  G  K  T  T  L  S  R  K  V  Y  N  D  S  S  L  D  F  Y  F  Y  H  K  I  W  I  Y  V  G  T  S  K  K  P  K  D  I  L  V  E  I  V  K  E  V  A  Q  S  N  S  K  E  L  I  K  D  K  D  E  D  Q  L  A  H  I  I  R  D  F  L  V  E  R  G  K  H  L  I  V  L  D  D  V  W  D  T  Q  V  V  D  F  V  K  K  A  F  P  N  K  K  S  R  P  R  G  D  R  I  M  L  T  T  R  Q  Q  R  V  A  E  A  V  S  A  R  P  H  Y  L  E  N  L  S  K  E  D  S  I  K  L  L  E  Q  R  V  F  A  N  K  R  T  C  P  I  E  L  Q  G  Y  R  D  G  I  V  D  K  C  C  G  V  P  L  A  I  V  V  I  S  G  A  L  R  G  C  M  D  E  S  E  W  R  V  V  E  E  N  V  G  K  H  L  I  N  K  D  D  H  K  S  C  L  K  F  V  E  T  S  Y  N  H  L  P  Q  E  K  K  A  A  F  L  Y  F  G  V  F  P  Q  G  F  D  I  P  A  W  N  L  I  R  L  W  V  A  E  G  L  I  K  S  G  H  K  D  S  E  I  E  K  V  A  E  T  Y  L  S  D  F  A  S  R  N  L  V  M  V  M  Q  K  R  S  N  G  Q  I  K  T  C  R  L  H  D  M  L  H  E  F  C  I  I  E  A  A  R  I  S  L  F  Q  Q  V  Y  L  Q  P  G  V  R  V  F  P  S  I  E  D  P  N  T  S  R  R  L  C  I  Q  S  S  I  P  Y  N  F  I  P  K  D  R  I  V  Q  H  V  R  S  L  L  C  F  S  S  D  Q  K  Q  I  D  L  S  N  L  D  V  Q  L  I  P  S  A  F  P  L  I  R  V  L  D  I  Q  S  L  I  F  E  F  S  K  M  F  Y  G  L  F  H  L  R  Y  I  A  I  K  G  D  F  T  I  I  P  S  L  F  R  N  F  W  Y  L  Q  T  L  I  L  R  N  D  D  T  N  T  S  S  S  T  L  E  I  K  E  D  I  W  K  L  L  Q  L  R  H  L  H  S  D  L  P  V  K  L  P  P  P  P  T  T  T  S  N  S  R  T  S  C  L  Q  T  L  S  K  V  T  P  D  S  C  K  K  T  V  F  A  K  A  C  H  L  R  K  L  G  I  E  G  K  L  A  L  L  L  G  K  E  R  G  F  D  S  F  Q  E  L  R  C  I  E  K  L  K  L  L  N  N  D  F  S  E  E  L  H  L  P  P  H  F  F  S  L  Q  K  T  L  N  K  L  T  L  S  S  T  R  F  K  W  S  E  A  D  M  L  G  Q  L  E  C  L  K  V  L  K  L  K  E  N  A  F  T  G  K  K  W  K  P  K  K  G  S  F  S  K  L  Q  V  L  H  I  V  W  A  G  E  W  E  T  W  D  A  S  N  R  P  F  Q  S  L  T  H  L  A  L  I  S  C  Y  D  L  K  A  V  P  H  E  L  A  D  L  P  Y  L  Q  E  M  K  L  T  R  T  F  Q  A  V  S  S  A  I  E  I  K  N  K  I  L  Q  R  Q  D  P  E  S  S  I  K  F  N  L  I  T  F  P  P  T  P  S  T  N  *   : G  L  N  Y  V  M  A  F  P  R  G  S  S  F  C  S  P  F  Q  R  N  K  P  V  V  F  Q  V  L  *  F  F  K  I  S  L  I  K  I  M  R  F  *  F  L  V  K  L  F  Q  Y  S  S  V  V  T  D  K  I  I </second_frame>
            <third_frame>   E  S  K  *  I  Y  *  K  Q  Y  F  Y  L  S  T  W  S :   I  L  V  D  R  W  R  L  *  S  L  Q  R  *  V  R  R  R  Q  K  R  *  A  F  W  W  T  V  Y  R  S  Y  Y  R  K  M  W  N  *  L  E  V  Q  I  E  I  S  S  D  Y  W  M  K  L  N  P  *  M  S  Y  *  Q  E  I  M  P  N  *  K  A  T  T  T  I  W  I  N  C  S  R  I  F  N  E  R  Y  I  K  L  K  M  R  S  I  N  S  *  F  R  R  K  L  M  K  L  I  F  S  I  R  S  V  R  S  S  S  G  T  T  I  G  R  L  H  R  N  S  E  K  F  S  N  K  *  L  K  F  A  N  R  L  N  R  F  W  R  K  P  V  Y  R  V  L  L  S  S  L  E  K  L  P  S  H  R :   V  L  L  R  R  M  S  K  W  L  V  L  I  S  L  Q  K  M  *  K  N  D  Y  V  K  D  Q  R  I  L  M  L  Y  L  L  W  V  C  Q  D  L  E  R  P  L  C  Q  E  K  F  T  M  I  L  P  L  I  F  I  F  T  T  K  Y  G  F  M  L  E  R  Q  R  N  R  R  I  F  L  L  R  L  *  K  K  S  R  K  A  I  V  R  N  *  L  K  T  R  M  R  T  N  *  L  I  S  Y  V  I  F  L  L  K  E  V  N  I  S  L  S  W  M  M  C  G  T  H  K  L  *  I  L  S  R  K  L  S  Q  T  K  N  P  G  P  E  G  I  E  L  C  *  Q  L  A  N  N  V  W  L  K  L  S  A  L  V  L  T  I  W  R  T  C  Q  K  R  I  V  *  S  C  W  N  R  E  F  L  P  I  K  G  H  V  L  L  S  Y  K  D  I  V  M  E  L  *  I  N  V  V  V  Y  R  L  P  *  W  *  F  Q  E  L  *  E  V  V  W  T  K  V  N  G  E  *  S  R  K  M  W  G  S  T  L  *  T  R  T  T  I  K  A  A  *  N  L  L  K  R  V  T  I  I  C  R  K  R  K  K  Q  P  S  C  I  L  E  Y  F  L  K  V  L  I  F  L  L  G  T  L  F  A  Y  G  L  L  R  G  *  *  S  P  V  I  K  T  V  K  S  R  R  L  Q  R  L  T  *  A  T  L  L  V  G  I  *  *  W  *  C  K  R  D  L  T  V  K  S  K  H  V  V  S  M  T  C  C  M  S  S  A  L  L  R  L  Q  G  *  V  S  F  N  K  Y  I  S  N  L  V  F  E  F  F  L  L  *  K  I  Q  I  L  L  V  D  Y  V  F  N  P  L  F  H  I  I  L  Y  L  K  I  E  L  Y  S  M  L  G  L  S  Y  V  F  P  R  T  K  S  K  L  T  C  L  I  *  M  S  N  S  S  P  V  P  F  H  *  S  G  C  W  T  F  N  P  S  Y  L  N  S  P  R  C  F  M  V  Y  F  T  *  G  I  L  P  S  K  A  T  S  L  S  F  L  H  S  S  V  I  F  G  I  Y  K  P  L  Y  F  V  M  M  I  Q  I  L  Q  A  P  P  L  R  *  K  R  T  Y  G  N  C  Y  N  *  D  I  C  T  P  T  F  L  *  N  C  L  P  L  L  P  Q  Q  A  I  V  V  L  L  V  Y  K  L  F  L  R  L  H  Q  I  V  A  K  K  L  C  L  Q  R  L  V  I  S  E  N  W  V  L  K  G  N  W  H  F  F  L  E  K  N  V  D  S  T  V  S  K  S  *  G  A  S  K  N  *  N  C  *  T  M  I  L  V  K  S  F  T  F  L  H  T  F  S  A  Y  K  K  H  *  T  S  *  L  C  Q  V  Q  G  S  S  G  V  R  Q  I  C  W  G  S  W  N  A  L  R  Y  *  N  *  K  R  M  H  S  Q  G  R  S  G  S  P  R  K  E  V  L  A  S  S  K  S  C  T  L  S  G  Q  E  S  G  K  L  G  M  H  Q  I  V  R  S  K  V  L  R  T  L  L  L  F  P  V  M  I  S  R  L  C  H  T  S  W  L  I  Y  L  I  C  K  R  *  S  *  R  A  H  S  R  Q  L  V  L  P  *  K  S  K  T  R  Y  Y  K  G  K  I  P  K  A  A  S  N  S  I  S  L  H  F  P  L  P  R  P  Q  I  K  :  D  *  I  M  S  W  R  S  L  A  D  H  L  S  A  V  H  S  N  E  T  N  L  L  S  F  K  Y  C  D  S  S  K  *  V  *  L  R  L  C  V  S  N  F  L  *  N  F  S  S  I  Q  V  L  L  L  I  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14041" stop="13562"/>
                    <exon start="11788" stop="9542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2724</number_coding_nucleotides>
                  <number_encoded_amino_acids>908</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMEAIIVAAVSPAATKAVSFLVDSLSQLLSENVELIRGADRDFQRLLDEIEPINELLAGDYAQLKSNNNDLDKLFQNIQRTVYKAEDAIDKFLIQAKIDEANFFNKIGPFVKWNNNRKIAPEFGKILEQVTEIRKQTQQVLEKTGIQSSAFQPGETTQPQGPAEEDVEVVGFNKPAEDVKERLCEGSKDLDVIPIVGMPGLGKTTLSRKVYNDSSLDFYFYHKIWIYVGTSKKPKDILVEIVKEVAQSNSKELIKDKDEDQLAHIIRDFLVERGKHLIVLDDVWDTQVVDFVKKAFPNKKSRPRGDRIMLTTRQQRVAEAVSARPHYLENLSKEDSIKLLEQRVFANKRTCPIELQGYRDGIVDKCCGVPLAIVVISGALRGCMDESEWRVVEENVGKHLINKDDHKSCLKFVETSYNHLPQEKKAAFLYFGVFPQGFDIPAWNLIRLWVAEGLIKSGHKDSEIEKVAETYLSDFASRNLVMVMQKRSNGQIKTCRLHDMLHEFCIIEAARISLFQQVYLQPGVRVFPSIEDPNTSRRLCIQSSIPYNFIPKDRIVQHVRSLLCFSSDQKQIDLSNLDVQLIPSAFPLIRVLDIQSLIFEFSKMFYGLFHLRYIAIKGDFTIIPSLFRNFWYLQTLILRNDDTNTSSSTLEIKEDIWKLLQLRHLHSDLPVKLPPPPTTTSNSRTSCLQTLSKVTPDSCKKTVFAKACHLRKLGIEGKLALLLGKERGFDSFQELRCIEKLKLLNNDFSEELHLPPHFFSLQKTLNKLTLSSTRFKWSEADMLGQLECLKVLKLKENAFTGKKWKPKKGSFSKLQVLHIVWAGEWETWDASNRPFQSLTHLALISCYDLKAVPHELADLPYLQEMKLTRTFQAVSSAIEIKNKILQRQDPESSIKFNLITFPPTPSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11795" e_stop="9541"/>
            <exon e_start="9386" e_stop="9208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="0.924"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="11795" e_stop="9541" e_length="2255"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9540" i_stop="9387" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="9386" e_stop="9208" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11795" stop="11304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11785" stop="11084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11784" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11389" stop="10840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="10264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="10354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10401" stop="9692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9926" stop="9541"/>
              <exon start="9386" stop="9208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAAGGGTCCTGCTGAGGAGGATGTCGAAGTGGTTGGTTTTAATAAGCCTGCAGAAGATGTGAAAGAACGACTATGTGAAGGATCAAAGGATCTTGATGTTATACCTATTGTGGGTATGCCAGGACTTGGAAAGACCACTCTGTCAAGAAAAGTTTACAATGATTCTTCCCTTGATTTTTATTTTTACCACAAAATATGGATTTATGTTGGAACGTCAAAGAAACCGAAGGATATTCTTGTTGAGATTGTAAAAGAAGTCGCGCAAAGCAATAGTAAGGAACTAATTAAAGACAAGGATGAGGACCAATTAGCTCATATCATACGTGATTTTCTTGTTGAAAGAGGTAAACATCTCATTGTCTTGGATGATGTGTGGGACACACAAGTTGTAGATTTTGTCAAGAAAGCTTTCCCAAACAAAAAATCCCGGCCCCGAGGGGATAGAATTATGTTGACAACTCGCCAACAACGTGTGGCTGAAGCTGTCAGCGCTCGTCCTCACTATCTGGAGAACTTGTCAAAAGAGGATAGTATAAAGTTGTTGGAACAGAGAGTTTTTGCCAATAAAAGGACATGTCCTATTGAGTTACAAGGATATCGTGATGGAATTGTAGATAAATGTTGTGGTGTACCGCTTGCCATAGTGGTGATTTCAGGAGCTTTGAGAGGTTGTATGGACGAAAGTGAATGGAGAGTAGTCGAGGAAAATGTGGGGAAGCACCTTATAAACAAGGACGACCATAAAAGCTGCTTGAAATTTGTTGAAACGAGTTACAATCATTTGCCGCAAGAGAAAAAAGCAGCCTTCTTGTATTTTGGAGTATTTCCTCAAGGTTTTGATATTCCTGCTTGGAACCTTATTCGCTTATGGGTTGCTGAGGGGCTAATAAAGTCCGGTCATAAAGACAGTGAAATCGAGAAGGTTGCAGAGACTTACTTGAGCGACTTTGCTAGTAGGAATTTAGTGATGGTGATGCAAAAGAGATCTAACGGTCAAATCAAAACATGTCGTCTCCATGACATGTTGCATGAGTTCTGCATTATTGAGGCTGCAAGGATAAGTCTCTTTCAACAAGTATATCTCCAACCTGGTGTTCGAGTTTTTCCTTCTATAGAAGATCCAAATACTTCTCGTCGATTATGTATTCAATCCTCTATTCCATATAATTTTATACCTAAAGATAGAATTGTACAGCATGTTAGGTCTCTCTTATGTTTTTCCTCGGACCAAAAGCAAATTGACTTGTCTAATCTAGATGTCCAACTCATCCCCAGTGCCTTTCCACTAATCAGGGTGTTGGACATTCAATCCCTCATATTTGAATTCTCCAAGATGTTTTATGGTCTATTTCACTTGAGGTATATTGCCATCAAAGGCGACTTCACTATCATTCCTTCACTCTTCCGTAATTTTTGGTATTTACAAACCCTTATACTTCGTAATGATGATACAAATACTTCAAGCTCCACCCTTGAGATAAAAGAGGACATATGGAAACTGTTACAATTGAGACATTTGCACTCCGACCTTCCTGTGAAATTGCCTCCCCCTCCTACCACAACAAGCAATAGTCGTACTTCTTGTCTACAAACTCTTTCTAAGGTTACACCAGATAGTTGCAAAAAAACTGTGTTTGCAAAGGCTTGTCATCTCAGAAAATTGGGTATTGAAGGGAAATTGGCACTTCTTCTTGGAAAAGAACGTGGATTCGACAGTTTCCAAGAGCTAAGGTGCATCGAAAAACTGAAATTGTTGAACAATGATTTTAGTGAAGAGCTTCACCTTCCTCCACACTTTTTCAGCTTACAAAAAACACTGAACAAGTTAACTTTGTCAAGTACAAGGTTCAAGTGGAGTGAGGCAGATATGTTGGGGCAGTTGGAATGCCTTAAGGTACTGAAATTGAAAGAGAATGCATTCACAGGGAAGAAGTGGAAGCCCAAGAAAGGAAGTTTTAGCAAGCTCCAAGTCCTGCACATTGTCTGGGCAGGAGAGTGGGAAACTTGGGATGCATCAAATCGTCCGTTCCAAAGTCTTACGCACCTTGCTCTTATTTCCTGTTATGATCTCAAGGCTGTGCCACACGAGCTGGCTGATTTACCTTATCTGCAAGAGATGAAGCTGACGCGCACATTCCAGGCAGTTAGTTCTGCCATAGAAATCAAAAACAAGATACTACAAAGGCAAGATCCCGAAAGCAGCATCAAATTCAATCTCATTACATTTCCCCCTACCCCGTCCACAAATTAAG : GATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAACTTTTCCAGTATTCAAGTGTTGTTACTGATAAGATTATT</gDNA_template>
            <first_frame> *  K  G  S  C  *  G  G  C  R  S  G  W  F  *  *  A  C  R  R  C  E  R  T  T  M  *  R  I  K  G  S  *  C  Y  T  Y  C  G  Y  A  R  T  W  K  D  H  S  V  K  K  S  L  Q  *  F  F  P  *  F  L  F  L  P  Q  N  M  D  L  C  W  N  V  K  E  T  E  G  Y  S  C  *  D  C  K  R  S  R  A  K  Q  *  *  G  T  N  *  R  Q  G  *  G  P  I  S  S  Y  H  T  *  F  S  C  *  K  R  *  T  S  H  C  L  G  *  C  V  G  H  T  S  C  R  F  C  Q  E  S  F  P  K  Q  K  I  P  A  P  R  G  *  N  Y  V  D  N  S  P  T  T  C  G  *  S  C  Q  R  S  S  S  L  S  G  E  L  V  K  R  G  *  Y  K  V  V  G  T  E  S  F  C  Q  *  K  D  M  S  Y  *  V  T  R  I  S  *  W  N  C  R  *  M  L  W  C  T  A  C  H  S  G  D  F  R  S  F  E  R  L  Y  G  R  K  *  M  E  S  S  R  G  K  C  G  E  A  P  Y  K  Q  G  R  P  *  K  L  L  E  I  C  *  N  E  L  Q  S  F  A  A  R  E  K  S  S  L  L  V  F  W  S  I  S  S  R  F  *  Y  S  C  L  E  P  Y  S  L  M  G  C  *  G  A  N  K  V  R  S  *  R  Q  *  N  R  E  G  C  R  D  L  L  E  R  L  C  *  *  E  F  S  D  G  D  A  K  E  I  *  R  S  N  Q  N  M  S  S  P  *  H  V  A  *  V  L  H  Y  *  G  C  K  D  K  S  L  S  T  S  I  S  P  T  W  C  S  S  F  S  F  Y  R  R  S  K  Y  F  S  S  I  M  Y  S  I  L  Y  S  I  *  F  Y  T  *  R  *  N  C  T  A  C  *  V  S  L  M  F  F  L  G  P  K  A  N  *  L  V  *  S  R  C  P  T  H  P  Q  C  L  S  T  N  Q  G  V  G  H  S  I  P  H  I  *  I  L  Q  D  V  L  W  S  I  S  L  E  V  Y  C  H  Q  R  R  L  H  Y  H  S  F  T  L  P  *  F  L  V  F  T  N  P  Y  T  S  *  *  *  Y  K  Y  F  K  L  H  P  *  D  K  R  G  H  M  E  T  V  T  I  E  T  F  A  L  R  P  S  C  E  I  A  S  P  S  Y  H  N  K  Q  *  S  Y  F  L  S  T  N  S  F  *  G  Y  T  R  *  L  Q  K  N  C  V  C  K  G  L  S  S  Q  K  I  G  Y  *  R  E  I  G  T  S  S  W  K  R  T  W  I  R  Q  F  P  R  A  K  V  H  R  K  T  E  I  V  E  Q  *  F  *  *  R  A  S  P  S  S  T  L  F  Q  L  T  K  N  T  E  Q  V  N  F  V  K  Y  K  V  Q  V  E  *  G  R  Y  V  G  A  V  G  M  P  *  G  T  E  I  E  R  E  C  I  H  R  E  E  V  E  A  Q  E  R  K  F  *  Q  A  P  S  P  A  H  C  L  G  R  R  V  G  N  L  G  C  I  K  S  S  V  P  K  S  Y  A  P  C  S  Y  F  L  L  *  S  Q  G  C  A  T  R  A  G  *  F  T  L  S  A  R  D  E  A  D  A  H  I  P  G  S  *  F  C  H  R  N  Q  K  Q  D  T  T  K  A  R  S  R  K  Q  H  Q  I  Q  S  H  Y  I  S  P  Y  P  V  H  K  L  R :   I  E  L  C  H  G  V  P  S  R  I  I  F  L  Q  S  I  P  T  K  Q  T  C  C  L  S  S  I  V  I  L  Q  N  K  F  N  *  D  Y  A  F  L  I  S  C  K  T  F  P  V  F  K  C  C  Y  *  *  D  Y  </first_frame>
            <second_frame>  E  K  G  P  A  E  E  D  V  E  V  V  G  F  N  K  P  A  E  D  V  K  E  R  L  C  E  G  S  K  D  L  D  V  I  P  I  V  G  M  P  G  L  G  K  T  T  L  S  R  K  V  Y  N  D  S  S  L  D  F  Y  F  Y  H  K  I  W  I  Y  V  G  T  S  K  K  P  K  D  I  L  V  E  I  V  K  E  V  A  Q  S  N  S  K  E  L  I  K  D  K  D  E  D  Q  L  A  H  I  I  R  D  F  L  V  E  R  G  K  H  L  I  V  L  D  D  V  W  D  T  Q  V  V  D  F  V  K  K  A  F  P  N  K  K  S  R  P  R  G  D  R  I  M  L  T  T  R  Q  Q  R  V  A  E  A  V  S  A  R  P  H  Y  L  E  N  L  S  K  E  D  S  I  K  L  L  E  Q  R  V  F  A  N  K  R  T  C  P  I  E  L  Q  G  Y  R  D  G  I  V  D  K  C  C  G  V  P  L  A  I  V  V  I  S  G  A  L  R  G  C  M  D  E  S  E  W  R  V  V  E  E  N  V  G  K  H  L  I  N  K  D  D  H  K  S  C  L  K  F  V  E  T  S  Y  N  H  L  P  Q  E  K  K  A  A  F  L  Y  F  G  V  F  P  Q  G  F  D  I  P  A  W  N  L  I  R  L  W  V  A  E  G  L  I  K  S  G  H  K  D  S  E  I  E  K  V  A  E  T  Y  L  S  D  F  A  S  R  N  L  V  M  V  M  Q  K  R  S  N  G  Q  I  K  T  C  R  L  H  D  M  L  H  E  F  C  I  I  E  A  A  R  I  S  L  F  Q  Q  V  Y  L  Q  P  G  V  R  V  F  P  S  I  E  D  P  N  T  S  R  R  L  C  I  Q  S  S  I  P  Y  N  F  I  P  K  D  R  I  V  Q  H  V  R  S  L  L  C  F  S  S  D  Q  K  Q  I  D  L  S  N  L  D  V  Q  L  I  P  S  A  F  P  L  I  R  V  L  D  I  Q  S  L  I  F  E  F  S  K  M  F  Y  G  L  F  H  L  R  Y  I  A  I  K  G  D  F  T  I  I  P  S  L  F  R  N  F  W  Y  L  Q  T  L  I  L  R  N  D  D  T  N  T  S  S  S  T  L  E  I  K  E  D  I  W  K  L  L  Q  L  R  H  L  H  S  D  L  P  V  K  L  P  P  P  P  T  T  T  S  N  S  R  T  S  C  L  Q  T  L  S  K  V  T  P  D  S  C  K  K  T  V  F  A  K  A  C  H  L  R  K  L  G  I  E  G  K  L  A  L  L  L  G  K  E  R  G  F  D  S  F  Q  E  L  R  C  I  E  K  L  K  L  L  N  N  D  F  S  E  E  L  H  L  P  P  H  F  F  S  L  Q  K  T  L  N  K  L  T  L  S  S  T  R  F  K  W  S  E  A  D  M  L  G  Q  L  E  C  L  K  V  L  K  L  K  E  N  A  F  T  G  K  K  W  K  P  K  K  G  S  F  S  K  L  Q  V  L  H  I  V  W  A  G  E  W  E  T  W  D  A  S  N  R  P  F  Q  S  L  T  H  L  A  L  I  S  C  Y  D  L  K  A  V  P  H  E  L  A  D  L  P  Y  L  Q  E  M  K  L  T  R  T  F  Q  A  V  S  S  A  I  E  I  K  N  K  I  L  Q  R  Q  D  P  E  S  S  I  K  F  N  L  I  T  F  P  P  T  P  S  T  N  *   : G  L  N  Y  V  M  A  F  P  R  G  S  S  F  C  S  P  F  Q  R  N  K  P  V  V  F  Q  V  L  *  F  F  K  I  S  L  I  K  I  M  R  F  *  F  L  V  K  L  F  Q  Y  S  S  V  V  T  D  K  I  I </second_frame>
            <third_frame>   K  R  V  L  L  R  R  M  S  K  W  L  V  L  I  S  L  Q  K  M  *  K  N  D  Y  V  K  D  Q  R  I  L  M  L  Y  L  L  W  V  C  Q  D  L  E  R  P  L  C  Q  E  K  F  T  M  I  L  P  L  I  F  I  F  T  T  K  Y  G  F  M  L  E  R  Q  R  N  R  R  I  F  L  L  R  L  *  K  K  S  R  K  A  I  V  R  N  *  L  K  T  R  M  R  T  N  *  L  I  S  Y  V  I  F  L  L  K  E  V  N  I  S  L  S  W  M  M  C  G  T  H  K  L  *  I  L  S  R  K  L  S  Q  T  K  N  P  G  P  E  G  I  E  L  C  *  Q  L  A  N  N  V  W  L  K  L  S  A  L  V  L  T  I  W  R  T  C  Q  K  R  I  V  *  S  C  W  N  R  E  F  L  P  I  K  G  H  V  L  L  S  Y  K  D  I  V  M  E  L  *  I  N  V  V  V  Y  R  L  P  *  W  *  F  Q  E  L  *  E  V  V  W  T  K  V  N  G  E  *  S  R  K  M  W  G  S  T  L  *  T  R  T  T  I  K  A  A  *  N  L  L  K  R  V  T  I  I  C  R  K  R  K  K  Q  P  S  C  I  L  E  Y  F  L  K  V  L  I  F  L  L  G  T  L  F  A  Y  G  L  L  R  G  *  *  S  P  V  I  K  T  V  K  S  R  R  L  Q  R  L  T  *  A  T  L  L  V  G  I  *  *  W  *  C  K  R  D  L  T  V  K  S  K  H  V  V  S  M  T  C  C  M  S  S  A  L  L  R  L  Q  G  *  V  S  F  N  K  Y  I  S  N  L  V  F  E  F  F  L  L  *  K  I  Q  I  L  L  V  D  Y  V  F  N  P  L  F  H  I  I  L  Y  L  K  I  E  L  Y  S  M  L  G  L  S  Y  V  F  P  R  T  K  S  K  L  T  C  L  I  *  M  S  N  S  S  P  V  P  F  H  *  S  G  C  W  T  F  N  P  S  Y  L  N  S  P  R  C  F  M  V  Y  F  T  *  G  I  L  P  S  K  A  T  S  L  S  F  L  H  S  S  V  I  F  G  I  Y  K  P  L  Y  F  V  M  M  I  Q  I  L  Q  A  P  P  L  R  *  K  R  T  Y  G  N  C  Y  N  *  D  I  C  T  P  T  F  L  *  N  C  L  P  L  L  P  Q  Q  A  I  V  V  L  L  V  Y  K  L  F  L  R  L  H  Q  I  V  A  K  K  L  C  L  Q  R  L  V  I  S  E  N  W  V  L  K  G  N  W  H  F  F  L  E  K  N  V  D  S  T  V  S  K  S  *  G  A  S  K  N  *  N  C  *  T  M  I  L  V  K  S  F  T  F  L  H  T  F  S  A  Y  K  K  H  *  T  S  *  L  C  Q  V  Q  G  S  S  G  V  R  Q  I  C  W  G  S  W  N  A  L  R  Y  *  N  *  K  R  M  H  S  Q  G  R  S  G  S  P  R  K  E  V  L  A  S  S  K  S  C  T  L  S  G  Q  E  S  G  K  L  G  M  H  Q  I  V  R  S  K  V  L  R  T  L  L  L  F  P  V  M  I  S  R  L  C  H  T  S  W  L  I  Y  L  I  C  K  R  *  S  *  R  A  H  S  R  Q  L  V  L  P  *  K  S  K  T  R  Y  Y  K  G  K  I  P  K  A  A  S  N  S  I  S  L  H  F  P  L  P  R  P  Q  I  K  :  D  *  I  M  S  W  R  S  L  A  D  H  L  S  A  V  H  S  N  E  T  N  L  L  S  F  K  Y  C  D  S  S  K  *  V  *  L  R  L  C  V  S  N  F  L  *  N  F  S  S  I  Q  V  L  L  L  I  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11794" stop="9542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2250</number_coding_nucleotides>
                  <number_encoded_amino_acids>750</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKGPAEEDVEVVGFNKPAEDVKERLCEGSKDLDVIPIVGMPGLGKTTLSRKVYNDSSLDFYFYHKIWIYVGTSKKPKDILVEIVKEVAQSNSKELIKDKDEDQLAHIIRDFLVERGKHLIVLDDVWDTQVVDFVKKAFPNKKSRPRGDRIMLTTRQQRVAEAVSARPHYLENLSKEDSIKLLEQRVFANKRTCPIELQGYRDGIVDKCCGVPLAIVVISGALRGCMDESEWRVVEENVGKHLINKDDHKSCLKFVETSYNHLPQEKKAAFLYFGVFPQGFDIPAWNLIRLWVAEGLIKSGHKDSEIEKVAETYLSDFASRNLVMVMQKRSNGQIKTCRLHDMLHEFCIIEAARISLFQQVYLQPGVRVFPSIEDPNTSRRLCIQSSIPYNFIPKDRIVQHVRSLLCFSSDQKQIDLSNLDVQLIPSAFPLIRVLDIQSLIFEFSKMFYGLFHLRYIAIKGDFTIIPSLFRNFWYLQTLILRNDDTNTSSSTLEIKEDIWKLLQLRHLHSDLPVKLPPPPTTTSNSRTSCLQTLSKVTPDSCKKTVFAKACHLRKLGIEGKLALLLGKERGFDSFQELRCIEKLKLLNNDFSEELHLPPHFFSLQKTLNKLTLSSTRFKWSEADMLGQLECLKVLKLKENAFTGKKWKPKKGSFSKLQVLHIVWAGEWETWDASNRPFQSLTHLALISCYDLKAVPHELADLPYLQEMKLTRTFQAVSSAIEIKNKILQRQDPESSIKFNLITFPPTPSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9397" e_stop="8540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="9397" e_stop="8540" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9397" stop="8540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTTGTAGGATTGAATTATGTCATGGCGTTCCCTCGCGGATCATCTTTCTGCAGTCCATTCCAACGAAACAAACCTGTTGTCTTTCAAGTATTGTGATTCTTCAAAATAAGTTTAATTAAGATTATGCGTTTCTAATTTCTTGTAAAACTTTTCCAGTATTCAAGTGTTGTTACTGATAAGATTATTTGTGCCATCGAAAGCATTTCCAGCTTTCAAATTTTGTTGCTTTTGCGCCACCCAAACTCAAGATGCTATTTTAATCGGACTCTTCACTCGGACCTGCGTGACAAATACATAGTATTATACTAAGTATTATAAAATTTTACTGATTTTTAAACATATATATATATACTAATGCACATATACATTTGCTCTGCATCAACACAAACTAACCTAATATATCATGATTTTCGATGGTGGTGTTCAAGATTTAGTATATAAAATTTTAAAAAATTAAATTAAATTTATTTATATAGCATAATTTTTTTATGATTTAATAAAAAACTTACCTGCTTAATTGCTATAGTTGACACAGGAAAATATTAGAAACAATGATACATAATTTATCAATTTGGATGATAACATTCTGCTCCCTTTTTTGATGATCATGGCAAAATAATGATATAACAATAGTTAATTTCTAGTTTTAAAAAATTAAAATTCATATGTGTAAATTGTAACTAGAATGTATATATTTATACATACTGAAAAATTGTACTAGTTATTAGGACTCTTTTAGGATAAGAACTTATATGTAACCACTAAAATATATAAATTTATACATACTAAAGAGTCCTCCTATGTAATATTTAGTTTATGTATTTAATATATATATATTTTTAATAGAAGTGTTA</gDNA_template>
            <first_frame> F  P  C  R  I  E  L  C  H  G  V  P  S  R  I  I  F  L  Q  S  I  P  T  K  Q  T  C  C  L  S  S  I  V  I  L  Q  N  K  F  N  *  D  Y  A  F  L  I  S  C  K  T  F  P  V  F  K  C  C  Y  *  *  D  Y  L  C  H  R  K  H  F  Q  L  S  N  F  V  A  F  A  P  P  K  L  K  M  L  F  *  S  D  S  S  L  G  P  A  *  Q  I  H  S  I  I  L  S  I  I  K  F  Y  *  F  L  N  I  Y  I  Y  T  N  A  H  I  H  L  L  C  I  N  T  N  *  P  N  I  S  *  F  S  M  V  V  F  K  I  *  Y  I  K  F  *  K  I  K  L  N  L  F  I  *  H  N  F  F  M  I  *  *  K  T  Y  L  L  N  C  Y  S  *  H  R  K  I  L  E  T  M  I  H  N  L  S  I  W  M  I  T  F  C  S  L  F  *  *  S  W  Q  N  N  D  I  T  I  V  N  F  *  F  *  K  I  K  I  H  M  C  K  L  *  L  E  C  I  Y  L  Y  I  L  K  N  C  T  S  Y  *  D  S  F  R  I  R  T  Y  M  *  P  L  K  Y  I  N  L  Y  I  L  K  S  P  P  M  *  Y  L  V  Y  V  F  N  I  Y  I  F  L  I  E  V  L </first_frame>
            <second_frame>  F  L  V  G  L  N  Y  V  M  A  F  P  R  G  S  S  F  C  S  P  F  Q  R  N  K  P  V  V  F  Q  V  L  *  F  F  K  I  S  L  I  K  I  M  R  F  *  F  L  V  K  L  F  Q  Y  S  S  V  V  T  D  K  I  I  C  A  I  E  S  I  S  S  F  Q  I  L  L  L  L  R  H  P  N  S  R  C  Y  F  N  R  T  L  H  S  D  L  R  D  K  Y  I  V  L  Y  *  V  L  *  N  F  T  D  F  *  T  Y  I  Y  I  L  M  H  I  Y  I  C  S  A  S  T  Q  T  N  L  I  Y  H  D  F  R  W  W  C  S  R  F  S  I  *  N  F  K  K  L  N  *  I  Y  L  Y  S  I  I  F  L  *  F  N  K  K  L  T  C  L  I  A  I  V  D  T  G  K  Y  *  K  Q  *  Y  I  I  Y  Q  F  G  *  *  H  S  A  P  F  F  D  D  H  G  K  I  M  I  *  Q  *  L  I  S  S  F  K  K  L  K  F  I  C  V  N  C  N  *  N  V  Y  I  Y  T  Y  *  K  I  V  L  V  I  R  T  L  L  G  *  E  L  I  C  N  H  *  N  I  *  I  Y  T  Y  *  R  V  L  L  C  N  I  *  F  M  Y  L  I  Y  I  Y  F  *  *  K  C   </second_frame>
            <third_frame>   S  L  *  D  *  I  M  S  W  R  S  L  A  D  H  L  S  A  V  H  S  N  E  T  N  L  L  S  F  K  Y  C  D  S  S  K  *  V  *  L  R  L  C  V  S  N  F  L  *  N  F  S  S  I  Q  V  L  L  L  I  R  L  F  V  P  S  K  A  F  P  A  F  K  F  C  C  F  C  A  T  Q  T  Q  D  A  I  L  I  G  L  F  T  R  T  C  V  T  N  T  *  Y  Y  T  K  Y  Y  K  I  L  L  I  F  K  H  I  Y  I  Y  *  C  T  Y  T  F  A  L  H  Q  H  K  L  T  *  Y  I  M  I  F  D  G  G  V  Q  D  L  V  Y  K  I  L  K  N  *  I  K  F  I  Y  I  A  *  F  F  Y  D  L  I  K  N  L  P  A  *  L  L  *  L  T  Q  E  N  I  R  N  N  D  T  *  F  I  N  L  D  D  N  I  L  L  P  F  L  M  I  M  A  K  *  *  Y  N  N  S  *  F  L  V  L  K  N  *  N  S  Y  V  *  I  V  T  R  M  Y  I  F  I  H  T  E  K  L  Y  *  L  L  G  L  F  *  D  K  N  L  Y  V  T  T  K  I  Y  K  F  I  H  T  K  E  S  S  Y  V  I  F  S  L  C  I  *  Y  I  Y  I  F  N  R  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0203L19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26176" PGL_stop="24985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26176" e_stop="25339"/>
            <exon e_start="25133" e_stop="24985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.493" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26176" e_stop="25339" e_length="838"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.493">
            <gDNA_intron_boundary i_start="25338" i_stop="25134" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="25133" e_stop="24985" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26176" stop="25755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25872" stop="25339"/>
              <exon start="25133" stop="25106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25711" stop="25339"/>
              <exon start="25133" stop="24985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTTGGAATCTGCACGCTCTCATTTTAGGTAAATCTTTTGTTATGAATCCTCGTAAGCGTAAAGTCTTCACTTTTCCAGAAGATATTTGGCAAATGACACAATTAAGGCATCTTTATGCAAAAGGCATTCATCTATGTTCGCCTGGAGATAATAAGGTTCTCGGAAACTTGCAGAGTGTTTCTGGTTTGAGTCCTTGCTGTTGTACAAAGGAAATATTTGAAGGGATTAAGAAAGTGAAAAAATTGGTCATTCGTGGAACGAGGGAGGAATTTCCTACAGATGTTAAATGGATAGATAATCTTAAATATTTGCAACATCTCGAGTCAGTAAGTATTGAAAATATCGATTTTATATTTCAGAAGAATACAACCAGTTTTTTTAGTCTTACAAGTCCAGATTCTTTTCCACAAAAACTCAAGGAGTTGAAACTTAGATGTACATATCTACCGTGGGAATGCATATCCATTATCAGCAAGTTGCCCGAACTTGAGGTACTCAAACTGAAGAGTAAATCCTTAATTGGCAACGAGTGGAAAGCAACAGACCAGGTTGGGTTCCCCAAGTTGAGGTTCTTGCTCCTTGATAATCTCCCCCTTACAGAATGGGAAAACACCACGGGCTCTCATGATCATTTCCCCAGCCTTGAGCGCTTAATAATCACAAATTTTAAATTCTTAGAAGAGATTCCTCAAGGATTTGCTGATAGCAAGAAACTGGAGCTGATTGAGTTACACTATTGTAACCCTTCCTTGGTGGATTTTGCTAAGAATGTGCAGGTTGAACACGAGGAGGTTTTGGGGAGGAACAAACTTAAAGTTACTGCCTTCAATACAG : GTCTAAAATGGCAGAGAGGAATCTTTGCTTCAAGAAATAACAGGATTCCCGGGCTAGTACCAAGCAGCAGCTGATCTATCACATAAGGAGTTCTCTTCCCTCCTTGTACTGCATTTGGTATTATTTGTTTTGATTTTTTTTTACAAAAC</gDNA_template>
            <first_frame> N  L  W  N  L  H  A  L  I  L  G  K  S  F  V  M  N  P  R  K  R  K  V  F  T  F  P  E  D  I  W  Q  M  T  Q  L  R  H  L  Y  A  K  G  I  H  L  C  S  P  G  D  N  K  V  L  G  N  L  Q  S  V  S  G  L  S  P  C  C  C  T  K  E  I  F  E  G  I  K  K  V  K  K  L  V  I  R  G  T  R  E  E  F  P  T  D  V  K  W  I  D  N  L  K  Y  L  Q  H  L  E  S  V  S  I  E  N  I  D  F  I  F  Q  K  N  T  T  S  F  F  S  L  T  S  P  D  S  F  P  Q  K  L  K  E  L  K  L  R  C  T  Y  L  P  W  E  C  I  S  I  I  S  K  L  P  E  L  E  V  L  K  L  K  S  K  S  L  I  G  N  E  W  K  A  T  D  Q  V  G  F  P  K  L  R  F  L  L  L  D  N  L  P  L  T  E  W  E  N  T  T  G  S  H  D  H  F  P  S  L  E  R  L  I  I  T  N  F  K  F  L  E  E  I  P  Q  G  F  A  D  S  K  K  L  E  L  I  E  L  H  Y  C  N  P  S  L  V  D  F  A  K  N  V  Q  V  E  H  E  E  V  L  G  R  N  K  L  K  V  T  A  F  N  T   : G  L  K  W  Q  R  G  I  F  A  S  R  N  N  R  I  P  G  L  V  P  S  S  S  *  S  I  T  *  G  V  L  F  P  P  C  T  A  F  G  I  I  C  F  D  F  F  L  Q  N </first_frame>
            <second_frame>  I  F  G  I  C  T  L  S  F  *  V  N  L  L  L  *  I  L  V  S  V  K  S  S  L  F  Q  K  I  F  G  K  *  H  N  *  G  I  F  M  Q  K  A  F  I  Y  V  R  L  E  I  I  R  F  S  E  T  C  R  V  F  L  V  *  V  L  A  V  V  Q  R  K  Y  L  K  G  L  R  K  *  K  N  W  S  F  V  E  R  G  R  N  F  L  Q  M  L  N  G  *  I  I  L  N  I  C  N  I  S  S  Q  *  V  L  K  I  S  I  L  Y  F  R  R  I  Q  P  V  F  L  V  L  Q  V  Q  I  L  F  H  K  N  S  R  S  *  N  L  D  V  H  I  Y  R  G  N  A  Y  P  L  S  A  S  C  P  N  L  R  Y  S  N  *  R  V  N  P  *  L  A  T  S  G  K  Q  Q  T  R  L  G  S  P  S  *  G  S  C  S  L  I  I  S  P  L  Q  N  G  K  T  P  R  A  L  M  I  I  S  P  A  L  S  A  *  *  S  Q  I  L  N  S  *  K  R  F  L  K  D  L  L  I  A  R  N  W  S  *  L  S  Y  T  I  V  T  L  P  W  W  I  L  L  R  M  C  R  L  N  T  R  R  F  W  G  G  T  N  L  K  L  L  P  S  I  Q  :  V  *  N  G  R  E  E  S  L  L  Q  E  I  T  G  F  P  G  *  Y  Q  A  A  A  D  L  S  H  K  E  F  S  S  L  L  V  L  H  L  V  L  F  V  L  I  F  F  Y  K   </second_frame>
            <third_frame>   S  L  E  S  A  R  S  H  F  R  *  I  F  C  Y  E  S  S  *  A  *  S  L  H  F  S  R  R  Y  L  A  N  D  T  I  K  A  S  L  C  K  R  H  S  S  M  F  A  W  R  *  *  G  S  R  K  L  A  E  C  F  W  F  E  S  L  L  L  Y  K  G  N  I  *  R  D  *  E  S  E  K  I  G  H  S  W  N  E  G  G  I  S  Y  R  C  *  M  D  R  *  S  *  I  F  A  T  S  R  V  S  K  Y  *  K  Y  R  F  Y  I  S  E  E  Y  N  Q  F  F  *  S  Y  K  S  R  F  F  S  T  K  T  Q  G  V  E  T  *  M  Y  I  S  T  V  G  M  H  I  H  Y  Q  Q  V  A  R  T  *  G  T  Q  T  E  E  *  I  L  N  W  Q  R  V  E  S  N  R  P  G  W  V  P  Q  V  E  V  L  A  P  *  *  S  P  P  Y  R  M  G  K  H  H  G  L  S  *  S  F  P  Q  P  *  A  L  N  N  H  K  F  *  I  L  R  R  D  S  S  R  I  C  *  *  Q  E  T  G  A  D  *  V  T  L  L  *  P  F  L  G  G  F  C  *  E  C  A  G  *  T  R  G  G  F  G  E  E  Q  T  *  S  Y  C  L  Q  Y  R :   S  K  M  A  E  R  N  L  C  F  K  K  *  Q  D  S  R  A  S  T  K  Q  Q  L  I  Y  H  I  R  S  S  L  P  S  L  Y  C  I  W  Y  Y  L  F  *  F  F  F  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26176" stop="25339"/>
                    <exon start="25133" stop="25060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWNLHALILGKSFVMNPRKRKVFTFPEDIWQMTQLRHLYAKGIHLCSPGDNKVLGNLQSVSGLSPCCCTKEIFEGIKKVKKLVIRGTREEFPTDVKWIDNLKYLQHLESVSIENIDFIFQKNTTSFFSLTSPDSFPQKLKELKLRCTYLPWECISIISKLPELEVLKLKSKSLIGNEWKATDQVGFPKLRFLLLDNLPLTEWENTTGSHDHFPSLERLIITNFKFLEEIPQGFADSKKLELIELHYCNPSLVDFAKNVQVEHEEVLGRNKLKVTAFNTGLKWQRGIFASRNNRIPGLVPSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="48685" PGL_stop="47346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48685" e_stop="48643"/>
            <exon e_start="48570" e_stop="48367"/>
            <exon e_start="48265" e_stop="48173"/>
            <exon e_start="48071" e_stop="47967"/>
            <exon e_start="47726" e_stop="47346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.945" e_score="0.930"/>
          <exon-intron don_prob="0.862" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="48685" e_stop="48643" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.945">
            <gDNA_intron_boundary i_start="48642" i_stop="48571" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="48570" e_stop="48367" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.996">
            <gDNA_intron_boundary i_start="48366" i_stop="48266" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48173" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48172" i_stop="48072" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48071" e_stop="47967" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47966" i_stop="47727" i_length="240"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="47726" e_stop="47346" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48685" stop="48643"/>
              <exon start="48570" stop="48367"/>
              <exon start="48265" stop="48173"/>
              <exon start="48071" stop="47967"/>
              <exon start="47726" stop="47346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGCCAAAGGATACTAAAAAGCGCATGTGGGAATACGTCAAT : TCCAAATTTCTACTTCCAGTAGAAGGAAAGAAGTGGGTGATGACTGGTCTTCGTGATGCTTGGAGGCGACACAAGCAAAAAATTAAAAAGAATTTTTTTGATAAAGACAGTACCCTTGAGGATATGCTAGCAAAATGTCCTGATGGCATTCCACATCATCAATTCCGCCAGTTGATCGAGTATTGGAAACACCCAACTGTTCAA : GCTATATGCGAGATGAATTCTCAAAACAGGAAAAAACAAAAGTGGAGGCATCGAATGGGACCTATTAATTTTGCTAGAGTACGCGTGGCATTG : CGTGCAGCCAAAGACAACAACGAAGAACCATCAAAGCCTGAAATATTTATTGCAACTCGTACCAAGACGGGAAAGGAAATCCAGGCTGATACCCAAGTTGCAATA : GCTGAACTTCAAAGTCGCCAAAATTCTGGGGAAACAGCTGATGATGCATTTAGGGCAGTGTTTGGAAAGGAGCAGCCTGGTCGAGTTAGGTGCTATGGTAGATCAGTGACAACAAGTTCTTTGAAGAAAGATGAGGAAATTAACAATCTAAAACAAAAGCATGCCGATGAAATCACTTCTCTAAAGGAAGAATTGAGAGAAGAAATGCGACATTTATTCACTCAATTGCTGCAAAAGAACCCTGGATTGAATTTTCAAGATATACCCGGGTGTGTTGGATCTAACCTTGCTTCACCTATTGATGCAAGTAGTGCACAAGCTGTAAAAGGCACAAATCTTCCATATTCTTCGGGGTCAGCTCAAGATTCGGTTCATCAAAAG</gDNA_template>
            <first_frame> G  A  K  G  Y  *  K  A  H  V  G  I  R  Q   : F  Q  I  S  T  S  S  R  R  K  E  V  G  D  D  W  S  S  *  C  L  E  A  T  Q  A  K  N  *  K  E  F  F  *  *  R  Q  Y  P  *  G  Y  A  S  K  M  S  *  W  H  S  T  S  S  I  P  P  V  D  R  V  L  E  T  P  N  C  S   : S  Y  M  R  D  E  F  S  K  Q  E  K  T  K  V  E  A  S  N  G  T  Y  *  F  C  *  S  T  R  G  I   : A  C  S  Q  R  Q  Q  R  R  T  I  K  A  *  N  I  Y  C  N  S  Y  Q  D  G  K  G  N  P  G  *  Y  P  S  C  N   : S  *  T  S  K  S  P  K  F  W  G  N  S  *  *  C  I  *  G  S  V  W  K  G  A  A  W  S  S  *  V  L  W  *  I  S  D  N  K  F  F  E  E  R  *  G  N  *  Q  S  K  T  K  A  C  R  *  N  H  F  S  K  G  R  I  E  R  R  N  A  T  F  I  H  S  I  A  A  K  E  P  W  I  E  F  S  R  Y  T  R  V  C  W  I  *  P  C  F  T  Y  *  C  K  *  C  T  S  C  K  R  H  K  S  S  I  F  F  G  V  S  S  R  F  G  S  S  K  </first_frame>
            <second_frame>  V  P  K  D  T  K  K  R  M  W  E  Y  V  N  :  S  K  F  L  L  P  V  E  G  K  K  W  V  M  T  G  L  R  D  A  W  R  R  H  K  Q  K  I  K  K  N  F  F  D  K  D  S  T  L  E  D  M  L  A  K  C  P  D  G  I  P  H  H  Q  F  R  Q  L  I  E  Y  W  K  H  P  T  V  Q  :  A  I  C  E  M  N  S  Q  N  R  K  K  Q  K  W  R  H  R  M  G  P  I  N  F  A  R  V  R  V  A  L  :  R  A  A  K  D  N  N  E  E  P  S  K  P  E  I  F  I  A  T  R  T  K  T  G  K  E  I  Q  A  D  T  Q  V  A  I  :  A  E  L  Q  S  R  Q  N  S  G  E  T  A  D  D  A  F  R  A  V  F  G  K  E  Q  P  G  R  V  R  C  Y  G  R  S  V  T  T  S  S  L  K  K  D  E  E  I  N  N  L  K  Q  K  H  A  D  E  I  T  S  L  K  E  E  L  R  E  E  M  R  H  L  F  T  Q  L  L  Q  K  N  P  G  L  N  F  Q  D  I  P  G  C  V  G  S  N  L  A  S  P  I  D  A  S  S  A  Q  A  V  K  G  T  N  L  P  Y  S  S  G  S  A  Q  D  S  V  H  Q  K </second_frame>
            <third_frame>   C  Q  R  I  L  K  S  A  C  G  N  T  S  I :   P  N  F  Y  F  Q  *  K  E  R  S  G  *  *  L  V  F  V  M  L  G  G  D  T  S  K  K  L  K  R  I  F  L  I  K  T  V  P  L  R  I  C  *  Q  N  V  L  M  A  F  H  I  I  N  S  A  S  *  S  S  I  G  N  T  Q  L  F  K :   L  Y  A  R  *  I  L  K  T  G  K  N  K  S  G  G  I  E  W  D  L  L  I  L  L  E  Y  A  W  H  C :   V  Q  P  K  T  T  T  K  N  H  Q  S  L  K  Y  L  L  Q  L  V  P  R  R  E  R  K  S  R  L  I  P  K  L  Q  * :   L  N  F  K  V  A  K  I  L  G  K  Q  L  M  M  H  L  G  Q  C  L  E  R  S  S  L  V  E  L  G  A  M  V  D  Q  *  Q  Q  V  L  *  R  K  M  R  K  L  T  I  *  N  K  S  M  P  M  K  S  L  L  *  R  K  N  *  E  K  K  C  D  I  Y  S  L  N  C  C  K  R  T  L  D  *  I  F  K  I  Y  P  G  V  L  D  L  T  L  L  H  L  L  M  Q  V  V  H  K  L  *  K  A  Q  I  F  H  I  L  R  G  Q  L  K  I  R  F  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48684" stop="48643"/>
                    <exon start="48570" stop="48367"/>
                    <exon start="48265" stop="48173"/>
                    <exon start="48071" stop="47967"/>
                    <exon start="47726" stop="47346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPKDTKKRMWEYVNSKFLLPVEGKKWVMTGLRDAWRRHKQKIKKNFFDKDSTLEDMLAKCPDGIPHHQFRQLIEYWKHPTVQAICEMNSQNRKKQKWRHRMGPINFARVRVALRAAKDNNEEPSKPEIFIATRTKTGKEIQADTQVAIAELQSRQNSGETADDAFRAVFGKEQPGRVRCYGRSVTTSSLKKDEEINNLKQKHADEITSLKEELREEMRHLFTQLLQKNPGLNFQDIPGCVGSNLASPIDASSAQAVKGTNLPYSSGSAQDSVHQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="76912" PGL_stop="73429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76912" e_stop="76644"/>
            <exon e_start="76303" e_stop="76288"/>
            <exon e_start="75381" e_stop="75361"/>
            <exon e_start="75127" e_stop="75105"/>
            <exon e_start="74965" e_stop="74959"/>
            <exon e_start="74870" e_stop="74859"/>
            <exon e_start="74239" e_stop="74207"/>
            <exon e_start="73855" e_stop="73429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.949" e_score="0.870"/>
          <exon-intron don_prob="0.376" acc_prob="0.804" e_score="0.562"/>
          <exon-intron don_prob="0.000" acc_prob="0.962" e_score="0.714"/>
          <exon-intron don_prob="0.000" acc_prob="0.920" e_score="0.609"/>
          <exon-intron don_prob="0.000" acc_prob="0.765" e_score="0.857"/>
          <exon-intron don_prob="0.000" acc_prob="0.841" e_score="0.667"/>
          <exon-intron don_prob="0.000" acc_prob="0.333" e_score="0.576"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.870">
            <gDNA_exon_boundary e_start="76912" e_stop="76644" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="76643" i_stop="76304" i_length="340"/>
          </intron>
          <exon e_serial="2" e_score="0.562">
            <gDNA_exon_boundary e_start="76303" e_stop="76288" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.376" acc_prob="0.804">
            <gDNA_intron_boundary i_start="76287" i_stop="75382" i_length="906"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="75381" e_stop="75361" e_length="21"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="75360" i_stop="75128" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="0.609">
            <gDNA_exon_boundary e_start="75127" e_stop="75105" e_length="23"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="75104" i_stop="74966" i_length="139"/>
          </intron>
          <exon e_serial="5" e_score="0.857">
            <gDNA_exon_boundary e_start="74965" e_stop="74959" e_length="7"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.765">
            <gDNA_intron_boundary i_start="74958" i_stop="74871" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="74870" e_stop="74859" e_length="12"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="74858" i_stop="74240" i_length="619"/>
          </intron>
          <exon e_serial="7" e_score="0.576">
            <gDNA_exon_boundary e_start="74239" e_stop="74207" e_length="33"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.333">
            <gDNA_intron_boundary i_start="74206" i_stop="73856" i_length="351"/>
          </intron>
          <exon e_serial="8" e_score="0.920">
            <gDNA_exon_boundary e_start="73855" e_stop="73429" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76912" stop="76644"/>
              <exon start="76303" stop="76288"/>
              <exon start="75381" stop="75361"/>
              <exon start="75127" stop="75105"/>
              <exon start="74965" stop="74959"/>
              <exon start="74870" stop="74859"/>
              <exon start="74239" stop="74207"/>
              <exon start="73855" stop="73429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76822" stop="76644"/>
              <exon start="76303" stop="76288"/>
              <exon start="75381" stop="75361"/>
              <exon start="75127" stop="75105"/>
              <exon start="74965" stop="74959"/>
              <exon start="74870" stop="74859"/>
              <exon start="74239" stop="74207"/>
              <exon start="73855" stop="73429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429531" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCAGAGTGCAGTTGTCTCAATTGTAACGGTTTCCATATGTCCTCTTTAATCTCAAGGATGGAGCTTGAAGTATGTGTATCATCATTACGAAGTATAAGAGTTTGTAAATATAAAAAATTACGAAAGAGTGAAGGAAGCACAGTGAAGTTGCCTCTGATGGCAATATACCTCAAGTGAAATAGCCGATAAAACATCTTGAAGAATTCAAATATGAGGGATTGAATGTCCAACACCCTGATGAGTGGAAAGGCGTTGGGGATGAGTTGG : CCCCCTCAAGTTGGAG : ATGTTAAGTAGTGGTGTTTGG : ATTCAGAAAAAACAAGAGGAAAA : ACCTAAG : GTGGCTGTCAAA : GTTTGTCTCTGAGATCATTGGATAGGGAATTGA : GGATACAATTATACGGAATAGACGAGAAGTATTTGGATCTTTTATAGAAGGAAAAACTCAAACACCATGTTGGAGATATACTTGTTGAAAGAGACTTATCCTTTGAGCTTCATTAATGCAGAACTCATGCAACATGTCATGGAGACGATATGTTTTGATTTGACCGTTAGATCTCTTTTGCATCACCATCACTAAATTCCTCCCGGTGAAGTCGCTCAAGTAAGTCTTTGCAACCTCCTCGATTTCACTGCCTTGAAGATCGGACTTTATTAGCCCCTCAGCAACTCATAAGCGAATACGTTTCCAAGCAGGAATATCAAAGCCTTGAGGAAATACTGCAAAATACAACTAGGCTGCCTTTCTCTGTTGCGCCAAATGATTGTAACTCGTTTTAACAAATTTCAAGCAACTTTTACTGTCATCTTTG</gDNA_template>
            <first_frame> G  Q  S  A  V  V  S  I  V  T  V  S  I  C  P  L  *  S  Q  G  W  S  L  K  Y  V  Y  H  H  Y  E  V  *  E  F  V  N  I  K  N  Y  E  R  V  K  E  A  Q  *  S  C  L  *  W  Q  Y  T  S  S  E  I  A  D  K  T  S  *  R  I  Q  I  *  G  I  E  C  P  T  P  *  *  V  E  R  R  W  G  *  V  G :   P  L  K  L  E  :  M  L  S  S  G  V  W  :  I  Q  K  K  Q  E  E  K :   P  K  :  V  A  V  K  :  V  C  L  *  D  H  W  I  G  N  *  :  G  Y  N  Y  T  E  *  T  R  S  I  W  I  F  Y  R  R  K  N  S  N  T  M  L  E  I  Y  L  L  K  E  T  Y  P  L  S  F  I  N  A  E  L  M  Q  H  V  M  E  T  I  C  F  D  L  T  V  R  S  L  L  H  H  H  H  *  I  P  P  G  E  V  A  Q  V  S  L  C  N  L  L  D  F  T  A  L  K  I  G  L  Y  *  P  L  S  N  S  *  A  N  T  F  P  S  R  N  I  K  A  L  R  K  Y  C  K  I  Q  L  G  C  L  S  L  L  R  Q  M  I  V  T  R  F  N  K  F  Q  A  T  F  T  V  I  F  </first_frame>
            <second_frame>  V  R  V  Q  L  S  Q  L  *  R  F  P  Y  V  L  F  N  L  K  D  G  A  *  S  M  C  I  I  I  T  K  Y  K  S  L  *  I  *  K  I  T  K  E  *  R  K  H  S  E  V  A  S  D  G  N  I  P  Q  V  K  *  P  I  K  H  L  E  E  F  K  Y  E  G  L  N  V  Q  H  P  D  E  W  K  G  V  G  D  E  L   : A  P  S  S  W  R :   C  *  V  V  V  F  G :   F  R  K  N  K  R  K   : N  L  R :   W  L  S  K :   F  V  S  E  I  I  G  *  G  I  E :   D  T  I  I  R  N  R  R  E  V  F  G  S  F  I  E  G  K  T  Q  T  P  C  W  R  Y  T  C  *  K  R  L  I  L  *  A  S  L  M  Q  N  S  C  N  M  S  W  R  R  Y  V  L  I  *  P  L  D  L  F  C  I  T  I  T  K  F  L  P  V  K  S  L  K  *  V  F  A  T  S  S  I  S  L  P  *  R  S  D  F  I  S  P  S  A  T  H  K  R  I  R  F  Q  A  G  I  S  K  P  *  G  N  T  A  K  Y  N  *  A  A  F  L  C  C  A  K  *  L  *  L  V  L  T  N  F  K  Q  L  L  L  S  S  L </second_frame>
            <third_frame>   S  E  C  S  C  L  N  C  N  G  F  H  M  S  S  L  I  S  R  M  E  L  E  V  C  V  S  S  L  R  S  I  R  V  C  K  Y  K  K  L  R  K  S  E  G  S  T  V  K  L  P  L  M  A  I  Y  L  K  *  N  S  R  *  N  I  L  K  N  S  N  M  R  D  *  M  S  N  T  L  M  S  G  K  A  L  G  M  S  W  :  P  P  Q  V  G   : D  V  K  *  W  C  L   : D  S  E  K  T  R  G  K  :  T  *   : G  G  C  Q   : S  L  S  L  R  S  L  D  R  E  L   : R  I  Q  L  Y  G  I  D  E  K  Y  L  D  L  L  *  K  E  K  L  K  H  H  V  G  D  I  L  V  E  R  D  L  S  F  E  L  H  *  C  R  T  H  A  T  C  H  G  D  D  M  F  *  F  D  R  *  I  S  F  A  S  P  S  L  N  S  S  R  *  S  R  S  S  K  S  L  Q  P  P  R  F  H  C  L  E  D  R  T  L  L  A  P  Q  Q  L  I  S  E  Y  V  S  K  Q  E  Y  Q  S  L  E  E  I  L  Q  N  T  T  R  L  P  F  S  V  A  P  N  D  C  N  S  F  *  Q  I  S  S  N  F  Y  C  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0203L19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="90170" PGL_stop="96914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90182" e_stop="90269"/>
            <exon e_start="90518" e_stop="90577"/>
            <exon e_start="91139" e_stop="91215"/>
            <exon e_start="91458" e_stop="91630"/>
            <exon e_start="91727" e_stop="91761"/>
            <exon e_start="91869" e_stop="91910"/>
            <exon e_start="92018" e_stop="92144"/>
            <exon e_start="92279" e_stop="92511"/>
            <exon e_start="94212" e_stop="94483"/>
            <exon e_start="94649" e_stop="95006"/>
            <exon e_start="95230" e_stop="95802"/>
            <exon e_start="96312" e_stop="96914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90182" e_stop="90269" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.951">
            <gDNA_intron_boundary i_start="90270" i_stop="90517" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90518" e_stop="90577" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.861">
            <gDNA_intron_boundary i_start="90578" i_stop="91138" i_length="561"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91139" e_stop="91215" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="91216" i_stop="91457" i_length="242"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91458" e_stop="91630" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.944">
            <gDNA_intron_boundary i_start="91631" i_stop="91726" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91727" e_stop="91761" e_length="35"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91762" i_stop="91868" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91869" e_stop="91910" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.684">
            <gDNA_intron_boundary i_start="91911" i_stop="92017" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92018" e_stop="92144" e_length="127"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92145" i_stop="92278" i_length="134"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="92279" e_stop="92511" e_length="233"/>
          </exon>
          <intron i_serial="8" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="92512" i_stop="94211" i_length="1700"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94212" e_stop="94483" e_length="272"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94484" i_stop="94648" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="94649" e_stop="95006" e_length="358"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95007" i_stop="95229" i_length="223"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="95230" e_stop="95802" e_length="573"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.906">
            <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="96312" e_stop="96914" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90182" stop="90269"/>
              <exon start="90518" stop="90577"/>
              <exon start="91139" stop="91215"/>
              <exon start="91458" stop="91630"/>
              <exon start="91727" stop="91761"/>
              <exon start="91869" stop="91880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90199" stop="90269"/>
              <exon start="90518" stop="90577"/>
              <exon start="91139" stop="91215"/>
              <exon start="91458" stop="91630"/>
              <exon start="91727" stop="91761"/>
              <exon start="91869" stop="91910"/>
              <exon start="92018" stop="92144"/>
              <exon start="92279" stop="92511"/>
              <exon start="94212" stop="94318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92371" stop="92511"/>
              <exon start="94212" stop="94483"/>
              <exon start="94649" stop="94815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94656" stop="95006"/>
              <exon start="95230" stop="95702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94656" stop="95006"/>
              <exon start="95230" stop="95700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94676" stop="95006"/>
              <exon start="95230" stop="95802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94867" stop="95006"/>
              <exon start="95230" stop="95668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94910" stop="95006"/>
              <exon start="95230" stop="95802"/>
              <exon start="96312" stop="96434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95236" stop="95662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95287" stop="95802"/>
              <exon start="96312" stop="96558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95607" stop="95802"/>
              <exon start="96312" stop="96870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95635" stop="95802"/>
              <exon start="96312" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95636" stop="95802"/>
              <exon start="96312" stop="96651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96342" stop="96911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96378" stop="96887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACACCCTTATCTTTCTCTTCCTTGTATCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATG : GAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTG : GAGATCTGAGTTTTGCTTCTAATAAGCTGAGATAAGGAAGCTACCGAATGTTCTTCCTTTTTGAGGCTGAGTTCATG : GTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCAT : CAAGGACTGAGTTCATTGAAGATCTGTCCACCTTT : ACTTTTGGTGGTGACGTCCGACCTCTAAATGTGCTCCCTCAG : GAGTCATCCACATCTCTCAAAGAACCACGGGGCGATGTATATTCAGAAAATTCAAGCCAAACCATTTCTAATGCCTCAGACACTTTAGGCAGCGAGGATGCTCGGAAAACAAGACAACTAACTGAAG : AATCATTGAAGCATCAAACTGCCACTGGAAGCAGCAATGATGGAGTAGAAGTGGCTATGAATGGAAATCACATAAGTCAGGTTACCGATAACTTGCACGAACCACAACAAACAGACAAAACTTCACCGAAACTTGTGTCAGCGGGGAAAGACGAAAGCATAGCAATGGAAACCAACTCAAAGAAAAAGACGAGTTCAACAGATCCTAACCAGACCTTGGATTCCACTAAAACT : GAAACAAGACATGATCAACACACTGTTCAAACCAGTGGTAAAGTTGTATCTGGAGAGACAGCAAGGGGCAAAGATGAAGAGCGGAATGCGCAAATTGTCCCCCCTGATGCCCGTGTTCGCCAGCTCAAGGATCAGCTCATTAGGGCGAAGGTCTACCTTTCACTCTCGGCAACACGAAGCAATCCCCACTTCATTAGAGAACTTCGCTTGCGGATAAAGGAATCGCTGCGAGCACTTGGTGAGGCCACTAAGGATTCTGATCTGTCTAGAAG : TGCCAATGAGAAGTTGAAGGCAATGGAGCAAACATTGGCCAAAGGGAAGCAGATTCAAGATGATTGTGCTACTATTGTAAAGAAGCTTCGTGCCATGCTTCACTCAGCAGAAGAGCAGCTCCGTGTCCACAAGAAGCAAACATTGTATTTAACACACTTAACTGCTAAGACACTTCCAAAGGGTCTTCATTGTCTTCCTTTACGCCTTTCAACAGAGTATTTCAAGTTAAATTCTTCCCAACAGCATTTTCCGCATCAAGAGAATTTAGAAAATCCCAAGCTATACCACTATGCACTCTTCTCAGACAACATATTAGCCGCTGCTGTCGTCGTAAACTCAACTGTTTCCCATGCAAAG : GATCCATCAAAACACGTTTTCCATATAGTGACTGACAGGCTTAATTTTGCTGCAATGAGAATGTGGTTTTTGGCTAATCAACCAAAGTATGCTACAGTAGATGTTCAAAGTGTTGAGGAATTCACCTGGCTAAATTCAAGTTATAGTCCAGTTCTGAAGCAATTGAATTCTCAGTCTATGATAGATTATTACTTCAGATCTCGTGCTGATTCTGATCCAAATGTGAAGTTTAGGAATCCAAAATACCTTTCAATCATGAATCACTTACGCTTTTACTTGCCGGAGATCTTCCCAAAGCTGGATAAGGTTCTCTTCTTGGATGATGATATTGTTGTGCAAAAGGATCTTGGCGGCCTTTGGTCACTTGATCTTAAGGGTAAGGTAATTGGTGTGGTTGAGACCTGTGGAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG : AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCATTTGTTTAGTTTACAGGTCCGTTCTTCCTGAATAAGTGTATGATTTTTGTTCTTGTTCTCTAAATCAGGGAGTTATTCAGGTATATATACATATATGTTGAGTGGAGTATTAGAGTGAACATTCTGTATGACCTTTATTCTTGACATCCATTATTGGATGACAGCATGAGTCCAGATTTATTGTAAATGATTAACCATAGCTATCCCTTTGAATTTTACTGTTGGTTCTTTTTTGGATTGTTGTATATCAATGGGTGCTACTCT</gDNA_template>
            <first_frame> D  T  L  I  F  L  F  L  V  S  L  F  L  L  H  S  P  *  P  N  S  S  F  F  Q  G  *  F  Y   : G  D  L  S  F  A  A  N  K  L  R  R  R  K  F  D  S  R  Y  S   : G  D  L  S  F  A  S  N  K  L  R  *  G  S  Y  R  M  F  F  L  F  E  A  E  F  M  :  V  I  *  G  F  A  V  N  K  L  R  *  G  R  N  *  R  G  F  S  D  E  D  E  T  E  E  A  G  F  V  L  V  A  S  D  C  F  C  P  Y  S  P  L  H  *  H  S  W  D  L  F  Y  F  S  F  F  I :   K  D  *  V  H  *  R  S  V  H  L   : Y  F  W  W  *  R  P  T  S  K  C  A  P  S   : G  V  I  H  I  S  Q  R  T  T  G  R  C  I  F  R  K  F  K  P  N  H  F  *  C  L  R  H  F  R  Q  R  G  C  S  E  N  K  T  T  N  *  R :   I  I  E  A  S  N  C  H  W  K  Q  Q  *  W  S  R  S  G  Y  E  W  K  S  H  K  S  G  Y  R  *  L  A  R  T  T  T  N  R  Q  N  F  T  E  T  C  V  S  G  E  R  R  K  H  S  N  G  N  Q  L  K  E  K  D  E  F  N  R  S  *  P  D  L  G  F  H  *  N   : *  N  K  T  *  S  T  H  C  S  N  Q  W  *  S  C  I  W  R  D  S  K  G  Q  R  *  R  A  E  C  A  N  C  P  P  *  C  P  C  S  P  A  Q  G  S  A  H  *  G  E  G  L  P  F  T  L  G  N  T  K  Q  S  P  L  H  *  R  T  S  L  A  D  K  G  I  A  A  S  T  W  *  G  H  *  G  F  *  S  V  *  K  :  C  Q  *  E  V  E  G  N  G  A  N  I  G  Q  R  E  A  D  S  R  *  L  C  Y  Y  C  K  E  A  S  C  H  A  S  L  S  R  R  A  A  P  C  P  Q  E  A  N  I  V  F  N  T  L  N  C  *  D  T  S  K  G  S  S  L  S  S  F  T  P  F  N  R  V  F  Q  V  K  F  F  P  T  A  F  S  A  S  R  E  F  R  K  S  Q  A  I  P  L  C  T  L  L  R  Q  H  I  S  R  C  C  R  R  K  L  N  C  F  P  C  K   : G  S  I  K  T  R  F  P  Y  S  D  *  Q  A  *  F  C  C  N  E  N  V  V  F  G  *  S  T  K  V  C  Y  S  R  C  S  K  C  *  G  I  H  L  A  K  F  K  L  *  S  S  S  E  A  I  E  F  S  V  Y  D  R  L  L  L  Q  I  S  C  *  F  *  S  K  C  E  V  *  E  S  K  I  P  F  N  H  E  S  L  T  L  L  L  A  G  D  L  P  K  A  G  *  G  S  L  L  G  *  *  Y  C  C  A  K  G  S  W  R  P  L  V  T  *  S  *  G  *  G  N  W  C  G  *  D  L  W  R  K  L  S  S  V  *  P  L  P  Q  L  L  K  S  S  D  L  *  K  F  *  S  S  C  L  W  L  G  I  W  N  E  H  H  *  S  K  *  V  E  A  T  K  H  H  R  G  V  P  L  M  A  K  S   : E  S  *  K  T  T  L  E  V  G  D  P  T  T  W  F  D  N  L  L  E  A  H  I  C  P  *  P  I  M  A  C  P  W  T  W  L  Q  S  K  C  *  P  E  G  H  P  T  S  S  S  H  T  L  Q  W  K  L  E  T  M  A  *  N  K  H  T  Q  V  P  G  L  L  V  K  I  C  *  L  *  S  D  I  F  A  R  V  *  Y  Q  Q  I  G  W  F  M  K  C  S  L  H  I  F  L  L  I  P  E  I  Q  R  A  S  I  C  L  V  Y  R  S  V  L  P  E  *  V  Y  D  F  C  S  C  S  L  N  Q  G  V  I  Q  V  Y  I  H  I  C  *  V  E  Y  *  S  E  H  S  V  *  P  L  F  L  T  S  I  I  G  *  Q  H  E  S  R  F  I  V  N  D  *  P  *  L  S  L  *  I  L  L  L  V  L  F  W  I  V  V  Y  Q  W  V  L  L  </first_frame>
            <second_frame>  T  P  L  S  F  S  S  L  Y  L  S  F  F  C  I  H  H  S  Q  I  L  P  F  F  K  A  D  F  M  :  E  I  *  V  L  L  L  I  S  *  E  E  G  S  L  I  V  V  I  L  :  E  I  *  V  L  L  L  I  S  *  D  K  E  A  T  E  C  S  S  F  L  R  L  S  S  W :   *  S  E  V  L  L  L  I  S  *  D  K  E  G  I  R  G  G  L  V  M  K  M  K  L  R  K  P  V  L  F  L  L  L  V  T  V  F  A  P  I  V  L  Y  T  D  T  L  G  T  Y  F  T  S  P  S  S   : S  R  T  E  F  I  E  D  L  S  T  F  :  T  F  G  G  D  V  R  P  L  N  V  L  P  Q  :  E  S  S  T  S  L  K  E  P  R  G  D  V  Y  S  E  N  S  S  Q  T  I  S  N  A  S  D  T  L  G  S  E  D  A  R  K  T  R  Q  L  T  E   : E  S  L  K  H  Q  T  A  T  G  S  S  N  D  G  V  E  V  A  M  N  G  N  H  I  S  Q  V  T  D  N  L  H  E  P  Q  Q  T  D  K  T  S  P  K  L  V  S  A  G  K  D  E  S  I  A  M  E  T  N  S  K  K  K  T  S  S  T  D  P  N  Q  T  L  D  S  T  K  T  :  E  T  R  H  D  Q  H  T  V  Q  T  S  G  K  V  V  S  G  E  T  A  R  G  K  D  E  E  R  N  A  Q  I  V  P  P  D  A  R  V  R  Q  L  K  D  Q  L  I  R  A  K  V  Y  L  S  L  S  A  T  R  S  N  P  H  F  I  R  E  L  R  L  R  I  K  E  S  L  R  A  L  G  E  A  T  K  D  S  D  L  S  R  S :   A  N  E  K  L  K  A  M  E  Q  T  L  A  K  G  K  Q  I  Q  D  D  C  A  T  I  V  K  K  L  R  A  M  L  H  S  A  E  E  Q  L  R  V  H  K  K  Q  T  L  Y  L  T  H  L  T  A  K  T  L  P  K  G  L  H  C  L  P  L  R  L  S  T  E  Y  F  K  L  N  S  S  Q  Q  H  F  P  H  Q  E  N  L  E  N  P  K  L  Y  H  Y  A  L  F  S  D  N  I  L  A  A  A  V  V  V  N  S  T  V  S  H  A  K  :  D  P  S  K  H  V  F  H  I  V  T  D  R  L  N  F  A  A  M  R  M  W  F  L  A  N  Q  P  K  Y  A  T  V  D  V  Q  S  V  E  E  F  T  W  L  N  S  S  Y  S  P  V  L  K  Q  L  N  S  Q  S  M  I  D  Y  Y  F  R  S  R  A  D  S  D  P  N  V  K  F  R  N  P  K  Y  L  S  I  M  N  H  L  R  F  Y  L  P  E  I  F  P  K  L  D  K  V  L  F  L  D  D  D  I  V  V  Q  K  D  L  G  G  L  W  S  L  D  L  K  G  K  V  I  G  V  V  E  T  C  G  E  S  F  H  R  F  D  R  Y  L  N  F  S  N  P  L  I  S  E  N  F  D  P  R  A  C  G  W  A  F  G  M  N  I  I  D  L  N  E  W  R  R  Q  N  I  T  E  V  Y  H  S  W  Q  N  R  :  N  H  E  R  Q  L  W  K  L  G  T  L  P  P  G  L  I  T  F  W  K  R  T  Y  A  L  D  R  S  W  H  V  L  G  L  G  Y  N  P  N  V  S  Q  K  D  I  Q  R  A  A  V  I  H  Y  N  G  N  L  K  P  W  L  E  I  S  I  P  K  F  R  D  Y  W  S  K  F  V  D  Y  D  Q  T  F  L  R  E  C  N  I  N  K  L  G  G  S  *  S  V  L  C  T  Y  F  S  *  F  L  K  Y  S  E  Q  A  F  V  *  F  T  G  P  F  F  L  N  K  C  M  I  F  V  L  V  L  *  I  R  E  L  F  R  Y  I  Y  I  Y  V  E  W  S  I  R  V  N  I  L  Y  D  L  Y  S  *  H  P  L  L  D  D  S  M  S  P  D  L  L  *  M  I  N  H  S  Y  P  F  E  F  Y  C  W  F  F  F  G  L  L  Y  I  N  G  C  Y  S </second_frame>
            <third_frame>   H  P  Y  L  S  L  P  C  I  S  L  S  F  A  F  T  I  A  K  F  F  L  F  S  R  L  I  L  W :   R  S  E  F  C  C  *  *  A  E  K  K  E  V  *  *  S  L  F  W :   R  S  E  F  C  F  *  *  A  E  I  R  K  L  P  N  V  L  P  F  *  G  *  V  H   : G  D  L  R  F  C  C  *  *  A  E  I  R  K  E  L  E  G  V  *  *  *  R  *  N  *  G  S  R  F  C  S  C  C  *  *  L  F  L  P  L  *  S  F  T  L  T  L  L  G  L  I  L  L  L  L  L  H  :  Q  G  L  S  S  L  K  I  C  P  P  L :   L  L  V  V  T  S  D  L  *  M  C  S  L  R :   S  H  P  H  L  S  K  N  H  G  A  M  Y  I  Q  K  I  Q  A  K  P  F  L  M  P  Q  T  L  *  A  A  R  M  L  G  K  Q  D  N  *  L  K  :  N  H  *  S  I  K  L  P  L  E  A  A  M  M  E  *  K  W  L  *  M  E  I  T  *  V  R  L  P  I  T  C  T  N  H  N  K  Q  T  K  L  H  R  N  L  C  Q  R  G  K  T  K  A  *  Q  W  K  P  T  Q  R  K  R  R  V  Q  Q  I  L  T  R  P  W  I  P  L  K  L :   K  Q  D  M  I  N  T  L  F  K  P  V  V  K  L  Y  L  E  R  Q  Q  G  A  K  M  K  S  G  M  R  K  L  S  P  L  M  P  V  F  A  S  S  R  I  S  S  L  G  R  R  S  T  F  H  S  R  Q  H  E  A  I  P  T  S  L  E  N  F  A  C  G  *  R  N  R  C  E  H  L  V  R  P  L  R  I  L  I  C  L  E   : V  P  M  R  S  *  R  Q  W  S  K  H  W  P  K  G  S  R  F  K  M  I  V  L  L  L  *  R  S  F  V  P  C  F  T  Q  Q  K  S  S  S  V  S  T  R  S  K  H  C  I  *  H  T  *  L  L  R  H  F  Q  R  V  F  I  V  F  L  Y  A  F  Q  Q  S  I  S  S  *  I  L  P  N  S  I  F  R  I  K  R  I  *  K  I  P  S  Y  T  T  M  H  S  S  Q  T  T  Y  *  P  L  L  S  S  *  T  Q  L  F  P  M  Q  R :   I  H  Q  N  T  F  S  I  *  *  L  T  G  L  I  L  L  Q  *  E  C  G  F  W  L  I  N  Q  S  M  L  Q  *  M  F  K  V  L  R  N  S  P  G  *  I  Q  V  I  V  Q  F  *  S  N  *  I  L  S  L  *  *  I  I  T  S  D  L  V  L  I  L  I  Q  M  *  S  L  G  I  Q  N  T  F  Q  S  *  I  T  Y  A  F  T  C  R  R  S  S  Q  S  W  I  R  F  S  S  W  M  M  I  L  L  C  K  R  I  L  A  A  F  G  H  L  I  L  R  V  R  *  L  V  W  L  R  P  V  E  K  A  F  I  G  L  T  A  T  S  T  S  Q  I  L  *  S  L  K  I  L  I  L  V  L  V  V  G  H  L  E  *  T  S  L  I  *  M  S  G  G  D  K  T  S  Q  R  C  T  T  H  G  K  I  G :   I  M  K  D  N  F  G  S  W  G  P  Y  H  L  V  *  *  P  F  G  S  A  H  M  P  L  T  D  H  G  M  S  L  D  L  A  T  I  Q  M  L  A  R  R  T  S  N  E  Q  Q  S  Y  T  T  M  E  T  *  N  H  G  L  K  *  A  Y  P  S  S  G  T  T  G  Q  N  L  L  T  M  I  R  H  F  C  E  S  V  I  S  T  N  W  V  V  H  E  V  F  S  A  H  I  S  P  N  S  *  N  T  A  S  K  H  L  F  S  L  Q  V  R  S  S  *  I  S  V  *  F  L  F  L  F  S  K  S  G  S  Y  S  G  I  Y  T  Y  M  L  S  G  V  L  E  *  T  F  C  M  T  F  I  L  D  I  H  Y  W  M  T  A  *  V  Q  I  Y  C  K  *  L  T  I  A  I  P  L  N  F  T  V  G  S  F  L  D  C  C  I  S  M  G  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91489" stop="91630"/>
                    <exon start="91727" stop="91761"/>
                    <exon start="91869" stop="91910"/>
                    <exon start="92018" stop="92144"/>
                    <exon start="92279" stop="92511"/>
                    <exon start="94212" stop="94483"/>
                    <exon start="94649" stop="95006"/>
                    <exon start="95230" stop="95802"/>
                    <exon start="96312" stop="96599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2067</number_coding_nucleotides>
                  <number_encoded_amino_acids>689</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKEGIRGGLVMKMKLRKPVLFLLLVTVFAPIVLYTDTLGTYFTSPSSSRTEFIEDLSTFTFGGDVRPLNVLPQESSTSLKEPRGDVYSENSSQTISNASDTLGSEDARKTRQLTEESLKHQTATGSSNDGVEVAMNGNHISQVTDNLHEPQQTDKTSPKLVSAGKDESIAMETNSKKKTSSTDPNQTLDSTKTETRHDQHTVQTSGKVVSGETARGKDEERNAQIVPPDARVRQLKDQLIRAKVYLSLSATRSNPHFIRELRLRIKESLRALGEATKDSDLSRSANEKLKAMEQTLAKGKQIQDDCATIVKKLRAMLHSAEEQLRVHKKQTLYLTHLTAKTLPKGLHCLPLRLSTEYFKLNSSQQHFPHQENLENPKLYHYALFSDNILAAAVVVNSTVSHAKDPSKHVFHIVTDRLNFAAMRMWFLANQPKYATVDVQSVEEFTWLNSSYSPVLKQLNSQSMIDYYFRSRADSDPNVKFRNPKYLSIMNHLRFYLPEIFPKLDKVLFLDDDIVVQKDLGGLWSLDLKGKVIGVVETCGESFHRFDRYLNFSNPLISENFDPRACGWAFGMNIIDLNEWRRQNITEVYHSWQNRNHERQLWKLGTLPPGLITFWKRTYALDRSWHVLGLGYNPNVSQKDIQRAAVIHYNGNLKPWLEISIPKFRDYWSKFVDYDQTFLRECNINKLGGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90170" e_stop="90269"/>
            <exon e_start="90518" e_stop="90577"/>
            <exon e_start="90810" e_stop="90872"/>
            <exon e_start="91195" e_stop="91215"/>
            <exon e_start="91458" e_stop="91630"/>
            <exon e_start="91727" e_stop="91761"/>
            <exon e_start="91869" e_stop="91910"/>
            <exon e_start="92018" e_stop="92144"/>
            <exon e_start="92279" e_stop="92343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.951" e_score="0.940"/>
          <exon-intron don_prob="0.985" acc_prob="0.027" e_score="0.900"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.921"/>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.944" e_score="0.971"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.684" e_score="0.976"/>
          <exon-intron don_prob="0.948" acc_prob="0.993" e_score="0.961"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="90170" e_stop="90269" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.951">
            <gDNA_intron_boundary i_start="90270" i_stop="90517" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="90518" e_stop="90577" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.027">
            <gDNA_intron_boundary i_start="90578" i_stop="90809" i_length="232"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="90810" e_stop="90872" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90873" i_stop="91194" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91195" e_stop="91215" e_length="21"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="91216" i_stop="91457" i_length="242"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="91458" e_stop="91630" e_length="173"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.944">
            <gDNA_intron_boundary i_start="91631" i_stop="91726" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91727" e_stop="91761" e_length="35"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91762" i_stop="91868" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="91869" e_stop="91910" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.684">
            <gDNA_intron_boundary i_start="91911" i_stop="92017" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="0.961">
            <gDNA_exon_boundary e_start="92018" e_stop="92144" e_length="127"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92145" i_stop="92278" i_length="134"/>
          </intron>
          <exon e_serial="9" e_score="0.954">
            <gDNA_exon_boundary e_start="92279" e_stop="92343" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90170" stop="90269"/>
              <exon start="90518" stop="90577"/>
              <exon start="90810" stop="90872"/>
              <exon start="91195" stop="91215"/>
              <exon start="91458" stop="91630"/>
              <exon start="91727" stop="91761"/>
              <exon start="91869" stop="91910"/>
              <exon start="92018" stop="92144"/>
              <exon start="92279" stop="92343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90170" stop="90269"/>
              <exon start="90518" stop="90577"/>
              <exon start="90810" stop="90872"/>
              <exon start="91195" stop="91215"/>
              <exon start="91458" stop="91630"/>
              <exon start="91727" stop="91761"/>
              <exon start="91869" stop="91874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCTCTTACCGACACCCTTATCTTTCTCTTCCTTGTATCTCTCTTTCTTTTGCATTCACCATAGCCAAATTCTTCCTTTTTTCAAGGCTGATTTTATG : GAGATCTGAGTTTTGCTGCTAATAAGCTGAGAAGAAGGAAGTTTGATAGTCGTTATTCTG : GAGATCTGAATTTTACTTCTAATAAGCTGAGATAAGGAAGAAATTTGCTAGCGACTGTTCTGG : CTTTTTGAGGCTGAGTTCATG : GTGATCTGAGGTTTTGCTGTTAATAAGCTGAGATAAGGAAGGAATTAGAGGGGGTTTAGTGATGAAGATGAAACTGAGGAAGCCGGTTTTGTTCTTGTTGCTAGTGACTGTTTTTGCCCCTATAGTCCTTTACACTGACACTCTTGGGACTTATTTTACTTCTCCTTCTTCAT : CAAGGACTGAGTTCATTGAAGATCTGTCCACCTTT : ACTTTTGGTGGTGACGTCCGACCTCTAAATGTGCTCCCTCAG : GAGTCATCCACATCTCTCAAAGAACCACGGGGCGATGTATATTCAGAAAATTCAAGCCAAACCATTTCTAATGCCTCAGACACTTTAGGCAGCGAGGATGCTCGGAAAACAAGACAACTAACTGAAG : AATCATTGAAGCATCAAACTGCCACTGGAAGCAGCAATGATGGAGTAGAAGTGGCTATGAATGGA</gDNA_template>
            <first_frame> F  A  L  T  D  T  L  I  F  L  F  L  V  S  L  F  L  L  H  S  P  *  P  N  S  S  F  F  Q  G  *  F  Y   : G  D  L  S  F  A  A  N  K  L  R  R  R  K  F  D  S  R  Y  S   : G  D  L  N  F  T  S  N  K  L  R  *  G  R  N  L  L  A  T  V  L   : A  F  *  G  *  V  H   : G  D  L  R  F  C  C  *  *  A  E  I  R  K  E  L  E  G  V  *  *  *  R  *  N  *  G  S  R  F  C  S  C  C  *  *  L  F  L  P  L  *  S  F  T  L  T  L  L  G  L  I  L  L  L  L  L  H  :  Q  G  L  S  S  L  K  I  C  P  P  L :   L  L  V  V  T  S  D  L  *  M  C  S  L  R :   S  H  P  H  L  S  K  N  H  G  A  M  Y  I  Q  K  I  Q  A  K  P  F  L  M  P  Q  T  L  *  A  A  R  M  L  G  K  Q  D  N  *  L  K  :  N  H  *  S  I  K  L  P  L  E  A  A  M  M  E  *  K  W  L  *  M   </first_frame>
            <second_frame>  L  L  L  P  T  P  L  S  F  S  S  L  Y  L  S  F  F  C  I  H  H  S  Q  I  L  P  F  F  K  A  D  F  M  :  E  I  *  V  L  L  L  I  S  *  E  E  G  S  L  I  V  V  I  L  :  E  I  *  I  L  L  L  I  S  *  D  K  E  E  I  C  *  R  L  F  W  :  L  F  E  A  E  F  M  :  V  I  *  G  F  A  V  N  K  L  R  *  G  R  N  *  R  G  F  S  D  E  D  E  T  E  E  A  G  F  V  L  V  A  S  D  C  F  C  P  Y  S  P  L  H  *  H  S  W  D  L  F  Y  F  S  F  F  I :   K  D  *  V  H  *  R  S  V  H  L   : Y  F  W  W  *  R  P  T  S  K  C  A  P  S   : G  V  I  H  I  S  Q  R  T  T  G  R  C  I  F  R  K  F  K  P  N  H  F  *  C  L  R  H  F  R  Q  R  G  C  S  E  N  K  T  T  N  *  R :   I  I  E  A  S  N  C  H  W  K  Q  Q  *  W  S  R  S  G  Y  E  W  </second_frame>
            <third_frame>   C  S  Y  R  H  P  Y  L  S  L  P  C  I  S  L  S  F  A  F  T  I  A  K  F  F  L  F  S  R  L  I  L  W :   R  S  E  F  C  C  *  *  A  E  K  K  E  V  *  *  S  L  F  W :   R  S  E  F  Y  F  *  *  A  E  I  R  K  K  F  A  S  D  C  S  G :   F  L  R  L  S  S  W :   *  S  E  V  L  L  L  I  S  *  D  K  E  G  I  R  G  G  L  V  M  K  M  K  L  R  K  P  V  L  F  L  L  L  V  T  V  F  A  P  I  V  L  Y  T  D  T  L  G  T  Y  F  T  S  P  S  S   : S  R  T  E  F  I  E  D  L  S  T  F  :  T  F  G  G  D  V  R  P  L  N  V  L  P  Q  :  E  S  S  T  S  L  K  E  P  R  G  D  V  Y  S  E  N  S  S  Q  T  I  S  N  A  S  D  T  L  G  S  E  D  A  R  K  T  R  Q  L  T  E   : E  S  L  K  H  Q  T  A  T  G  S  S  N  D  G  V  E  V  A  M  N  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91489" stop="91630"/>
                    <exon start="91727" stop="91761"/>
                    <exon start="91869" stop="91910"/>
                    <exon start="92018" stop="92144"/>
                    <exon start="92279" stop="92343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKEGIRGGLVMKMKLRKPVLFLLLVTVFAPIVLYTDTLGTYFTSPSSSRTEFIEDLSTFTFGGDVRPLNVLPQESSTSLKEPRGDVYSENSSQTISNASDTLGSEDARKTRQLTEESLKHQTATGSSNDGVEVAMNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="103190" PGL_stop="106765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103190" e_stop="103524"/>
            <exon e_start="104487" e_stop="104585"/>
            <exon e_start="105730" e_stop="105873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.907"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="0.949"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="103190" e_stop="103524" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103525" i_stop="104486" i_length="962"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="104487" e_stop="104585" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="104586" i_stop="105729" i_length="1144"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="105730" e_stop="105873" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103190" stop="103524"/>
              <exon start="104487" stop="104585"/>
              <exon start="105730" stop="105873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103190" stop="103524"/>
              <exon start="104487" stop="104574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGATACCCAACTTTTCTTTAACCCTTTATTTTGTATATCTTTTCCCCCCTCTCTCCATCTGTAGTGGGTATAAGCTTTTTCAGTGAGATTGAATGAATTCCCATTTGGGTTTTGTATAATACGTTCAGTTTATTCACTTGTACAGTGAGTTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGGCTGAAGAGAGTAGCAAAAAAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTGATGATGAACCTCACAACAACAACAACAACAACAACAATCCCTCT : GAGTTTCCATATCCGGTGAATAATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCACGATTAGATTCTACTACTAACACACCTTCTAACAAG : AACTTTTGTCCAATATGTCTGGATTCATTGAGCTATAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCTCATGCTTTTCACTTCGCTTGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCT</gDNA_template>
            <first_frame> A  I  P  N  F  S  L  T  L  Y  F  V  Y  L  F  P  P  L  S  I  C  S  G  Y  K  L  F  Q  *  D  *  M  N  S  H  L  G  F  V  *  Y  V  Q  F  I  H  L  Y  S  E  F  Y  E  K  G  R  R  R  K  W  V  Y  S  P  E  S  R  R  R  I  Q  G  G  *  R  E  *  Q  K  R  F  F  F  R  L  V  G  H  F  V  V  D  T  K  T  L  L  M  M  N  L  T  T  T  T  T  T  T  T  I  P  L :   S  F  H  I  R  *  I  I  S  S  C  *  I  I  L  L  *  L  N  P  H  D  *  I  L  L  L  T  H  L  L  T  R :   T  F  V  Q  Y  V  W  I  H  *  A  I  A  A  T  A  A  Q  D  R  L  Y  S  Q  H  S  A  L  M  L  F  T  S  L  A  Y  H  P  T  S  A  M  A  M  L  L  A   </first_frame>
            <second_frame>  R  Y  P  T  F  L  *  P  F  I  L  Y  I  F  S  P  L  S  P  S  V  V  G  I  S  F  F  S  E  I  E  *  I  P  I  W  V  L  Y  N  T  F  S  L  F  T  C  T  V  S  F  T  K  R  V  V  A  G  N  G  Y  I  R  R  R  V  V  V  V  F  R  E  A  E  E  S  S  K  K  D  S  S  S  D  L  W  V  I  S  L  W  I  P  K  P  S  *  *  *  T  S  Q  Q  Q  Q  Q  Q  Q  Q  S  L   : *  V  S  I  S  G  E  *  S  R  A  V  E  S  Y  F  C  N  *  I  L  T  I  R  F  Y  Y  *  H  T  F  *  Q   : E  L  L  S  N  M  S  G  F  I  E  L  *  L  R  Q  Q  P  R  T  G  Y  I  H  S  T  V  L  S  C  F  S  L  R  L  H  I  I  Q  H  P  P  W  Q  C  Y  L  P  </second_frame>
            <third_frame>   D  T  Q  L  F  F  N  P  L  F  C  I  S  F  P  P  S  L  H  L  *  W  V  *  A  F  S  V  R  L  N  E  F  P  F  G  F  C  I  I  R  S  V  Y  S  L  V  Q  *  V  L  R  K  G  S  S  P  E  M  G  I  F  A  G  E  S  S  S  Y  S  G  R  L  K  R  V  A  K  K  I  L  L  Q  T  C  G  S  F  R  C  G  Y  Q  N  P  P  D  D  E  P  H  N  N  N  N  N  N  N  N  P  S  :  E  F  P  Y  P  V  N  N  L  E  L  L  N  H  T  S  V  I  K  S  S  R  L  D  S  T  T  N  T  P  S  N  K  :  N  F  C  P  I  C  L  D  S  L  S  Y  S  C  D  S  S  P  G  Q  A  I  F  T  A  Q  C  S  H  A  F  H  F  A  C  I  S  S  N  I  R  H  G  N  V  T  C  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103339" stop="103524"/>
                    <exon start="104487" stop="104585"/>
                    <exon start="105730" stop="105873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRKGSSPEMGIFAGESSSYSGRLKRVAKKILLQTCGSFRCGYQNPPDDEPHNNNNNNNNPSEFPYPVNNLELLNHTSVIKSSRLDSTTNTPSNKNFCPICLDSLSYSCDSSPGQAIFTAQCSHAFHFACISSNIRHGNVTCP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103315" e_stop="103524"/>
            <exon e_start="103677" e_stop="103684"/>
            <exon e_start="104487" e_stop="104585"/>
            <exon e_start="105730" e_stop="106765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.919"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.750"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="0.929"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="103315" e_stop="103524" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103525" i_stop="103676" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="103677" e_stop="103684" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103685" i_stop="104486" i_length="802"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="104487" e_stop="104585" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="104586" i_stop="105729" i_length="1144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105730" e_stop="106765" e_length="1036"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103315" stop="103524"/>
              <exon start="103677" stop="103684"/>
              <exon start="104487" stop="104585"/>
              <exon start="105730" stop="105978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105972" stop="106765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTTTATTCACTTGTACAGTGAGTTTTACGAAAAGGGTCGTCGCCGGAAATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGGCTGAAGAGAGTAGCAAAAAAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTGATGATGAACCTCACAACAACAACAACAACAACAACAATCCCTCT : AGATCTCT : GAGTTTCCATATCCGGTGAATAATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCACGATTAGATTCTACTACTAACACACCTTCTAACAAG : AACTTTTGTCCAATATGTCTGGATTCATTGAGCTATAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCTCATGCTTTTCACTTCGCTTGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCTGTTTGCCGTGCACATTGGACCCAGCTACCTCGGACATTGAAGATGCATTATTCTCCTCACAGCAATCGCGCTGATCCCATTCTCCAGATTCTTGATGAATCAATTGCTACTTCTCGGGTACATAGACGTTCCTTTTTACGTTCTGCTCGCTATGATGATGATGATCCAGTCGAGCCTGACCGTACATCAAATATTCACCGTTTGCATCTATCTTTATCACCTGTTCCTCACAGTACTTCTGTGTTTGATCCGTGCTCAAATCCAAAGTCTAGCTTTAGTTCATGCCATTATCCTCAGCATTGTTTAGAATCTTCACAATCAGCAGCACAGCATTTTGTAGAAACTGGGCAGTCTCCTCTGGTTTGCAGCTCCTCTAGTAGTGCTTATCTTTGCTTAAAATTGGCACATCAGCCAGCCACTGACTTAGTCTTAGTGGCAAGCCCCAACGGACCTCACCTGAGGCTTATGAAACAAGCCATGGCATTTGTGGTATTTTCATTGCGGCCTATAGACCGTTTGGCTATTGTTACCTACTCTTCTGCCGCAGCACGCATCTTCCCTCTCAAGTGTATGACCTCTTACGGGAAGCGCACAGCACTTCAAGTTATTGACAGACTGTTTTATATGGGCCAAGCTGATCCAGTAGAAGGACTCAAGAAAGGAGTAAAGATACTAAGAGAACGCAGCCACCAAAATACTCATTCTTTTATTCTACATCTTTCTGACAATCCAACAAGATCTTTCCATGGGTTTCACTTGGAACTTCCCATTACAATCCATAAGTTTCATGTGGGATTTGGATTTGGTACTTCAAATGGATTCGTCATGCACGAGTTTGAGAGATTTCTTGCTAAAATACTATGTGGTGCAGTTAGAGATATTGCATTGATGA</gDNA_template>
            <first_frame> S  V  Y  S  L  V  Q  *  V  L  R  K  G  S  S  P  E  M  G  I  F  A  G  E  S  S  S  Y  S  G  R  L  K  R  V  A  K  K  I  L  L  Q  T  C  G  S  F  R  C  G  Y  Q  N  P  P  D  D  E  P  H  N  N  N  N  N  N  N  N  P  S  :  R  S  L :   S  F  H  I  R  *  I  I  S  S  C  *  I  I  L  L  *  L  N  P  H  D  *  I  L  L  L  T  H  L  L  T  R :   T  F  V  Q  Y  V  W  I  H  *  A  I  A  A  T  A  A  Q  D  R  L  Y  S  Q  H  S  A  L  M  L  F  T  S  L  A  Y  H  P  T  S  A  M  A  M  L  L  A  L  F  A  V  H  I  G  P  S  Y  L  G  H  *  R  C  I  I  L  L  T  A  I  A  L  I  P  F  S  R  F  L  M  N  Q  L  L  L  L  G  Y  I  D  V  P  F  Y  V  L  L  A  M  M  M  M  I  Q  S  S  L  T  V  H  Q  I  F  T  V  C  I  Y  L  Y  H  L  F  L  T  V  L  L  C  L  I  R  A  Q  I  Q  S  L  A  L  V  H  A  I  I  L  S  I  V  *  N  L  H  N  Q  Q  H  S  I  L  *  K  L  G  S  L  L  W  F  A  A  P  L  V  V  L  I  F  A  *  N  W  H  I  S  Q  P  L  T  *  S  *  W  Q  A  P  T  D  L  T  *  G  L  *  N  K  P  W  H  L  W  Y  F  H  C  G  L  *  T  V  W  L  L  L  P  T  L  L  P  Q  H  A  S  S  L  S  S  V  *  P  L  T  G  S  A  Q  H  F  K  L  L  T  D  C  F  I  W  A  K  L  I  Q  *  K  D  S  R  K  E  *  R  Y  *  E  N  A  A  T  K  I  L  I  L  L  F  Y  I  F  L  T  I  Q  Q  D  L  S  M  G  F  T  W  N  F  P  L  Q  S  I  S  F  M  W  D  L  D  L  V  L  Q  M  D  S  S  C  T  S  L  R  D  F  L  L  K  Y  Y  V  V  Q  L  E  I  L  H  *  * </first_frame>
            <second_frame>  Q  F  I  H  L  Y  S  E  F  Y  E  K  G  R  R  R  K  W  V  Y  S  P  E  S  R  R  R  I  Q  G  G  *  R  E  *  Q  K  R  F  F  F  R  L  V  G  H  F  V  V  D  T  K  T  L  L  M  M  N  L  T  T  T  T  T  T  T  T  I  P  L :   D  L   : *  V  S  I  S  G  E  *  S  R  A  V  E  S  Y  F  C  N  *  I  L  T  I  R  F  Y  Y  *  H  T  F  *  Q   : E  L  L  S  N  M  S  G  F  I  E  L  *  L  R  Q  Q  P  R  T  G  Y  I  H  S  T  V  L  S  C  F  S  L  R  L  H  I  I  Q  H  P  P  W  Q  C  Y  L  P  C  L  P  C  T  L  D  P  A  T  S  D  I  E  D  A  L  F  S  S  Q  Q  S  R  *  S  H  S  P  D  S  *  *  I  N  C  Y  F  S  G  T  *  T  F  L  F  T  F  C  S  L  *  *  *  *  S  S  R  A  *  P  Y  I  K  Y  S  P  F  A  S  I  F  I  T  C  S  S  Q  Y  F  C  V  *  S  V  L  K  S  K  V  *  L  *  F  M  P  L  S  S  A  L  F  R  I  F  T  I  S  S  T  A  F  C  R  N  W  A  V  S  S  G  L  Q  L  L  *  *  C  L  S  L  L  K  I  G  T  S  A  S  H  *  L  S  L  S  G  K  P  Q  R  T  S  P  E  A  Y  E  T  S  H  G  I  C  G  I  F  I  A  A  Y  R  P  F  G  Y  C  Y  L  L  F  C  R  S  T  H  L  P  S  Q  V  Y  D  L  L  R  E  A  H  S  T  S  S  Y  *  Q  T  V  L  Y  G  P  S  *  S  S  R  R  T  Q  E  R  S  K  D  T  K  R  T  Q  P  P  K  Y  S  F  F  Y  S  T  S  F  *  Q  S  N  K  I  F  P  W  V  S  L  G  T  S  H  Y  N  P  *  V  S  C  G  I  W  I  W  Y  F  K  W  I  R  H  A  R  V  *  E  I  S  C  *  N  T  M  W  C  S  *  R  Y  C  I  D   </second_frame>
            <third_frame>   S  L  F  T  C  T  V  S  F  T  K  R  V  V  A  G  N  G  Y  I  R  R  R  V  V  V  V  F  R  E  A  E  E  S  S  K  K  D  S  S  S  D  L  W  V  I  S  L  W  I  P  K  P  S  *  *  *  T  S  Q  Q  Q  Q  Q  Q  Q  Q  S  L   : *  I  S  :  E  F  P  Y  P  V  N  N  L  E  L  L  N  H  T  S  V  I  K  S  S  R  L  D  S  T  T  N  T  P  S  N  K  :  N  F  C  P  I  C  L  D  S  L  S  Y  S  C  D  S  S  P  G  Q  A  I  F  T  A  Q  C  S  H  A  F  H  F  A  C  I  S  S  N  I  R  H  G  N  V  T  C  P  V  C  R  A  H  W  T  Q  L  P  R  T  L  K  M  H  Y  S  P  H  S  N  R  A  D  P  I  L  Q  I  L  D  E  S  I  A  T  S  R  V  H  R  R  S  F  L  R  S  A  R  Y  D  D  D  D  P  V  E  P  D  R  T  S  N  I  H  R  L  H  L  S  L  S  P  V  P  H  S  T  S  V  F  D  P  C  S  N  P  K  S  S  F  S  S  C  H  Y  P  Q  H  C  L  E  S  S  Q  S  A  A  Q  H  F  V  E  T  G  Q  S  P  L  V  C  S  S  S  S  S  A  Y  L  C  L  K  L  A  H  Q  P  A  T  D  L  V  L  V  A  S  P  N  G  P  H  L  R  L  M  K  Q  A  M  A  F  V  V  F  S  L  R  P  I  D  R  L  A  I  V  T  Y  S  S  A  A  A  R  I  F  P  L  K  C  M  T  S  Y  G  K  R  T  A  L  Q  V  I  D  R  L  F  Y  M  G  Q  A  D  P  V  E  G  L  K  K  G  V  K  I  L  R  E  R  S  H  Q  N  T  H  S  F  I  L  H  L  S  D  N  P  T  R  S  F  H  G  F  H  L  E  L  P  I  T  I  H  K  F  H  V  G  F  G  F  G  T  S  N  G  F  V  M  H  E  F  E  R  F  L  A  K  I  L  C  G  A  V  R  D  I  A  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103679" stop="103684"/>
                    <exon start="104487" stop="104585"/>
                    <exon start="105730" stop="106764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEFPYPVNNLELLNHTSVIKSSRLDSTTNTPSNKNFCPICLDSLSYSCDSSPGQAIFTAQCSHAFHFACISSNIRHGNVTCPVCRAHWTQLPRTLKMHYSPHSNRADPILQILDESIATSRVHRRSFLRSARYDDDDPVEPDRTSNIHRLHLSLSPVPHSTSVFDPCSNPKSSFSSCHYPQHCLESSQSAAQHFVETGQSPLVCSSSSSAYLCLKLAHQPATDLVLVASPNGPHLRLMKQAMAFVVFSLRPIDRLAIVTYSSAAARIFPLKCMTSYGKRTALQVIDRLFYMGQADPVEGLKKGVKILRERSHQNTHSFILHLSDNPTRSFHGFHLELPITIHKFHVGFGFGTSNGFVMHEFERFLAKILCGAVRDIALM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103339" stop="103524"/>
                    <exon start="103677" stop="103684"/>
                    <exon start="104487" stop="104505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRKGSSPEMGIFAGESSSYSGRLKRVAKKILLQTCGSFRCGYQNPPDDEPHNNNNNNNNPSRSLSFHIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="107264" PGL_stop="106622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107264" e_stop="106622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="107264" e_stop="106622" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107264" stop="106622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAAAATATTATAAGCACTTCATAACAGTTCAATCAATCATATTAGATTCTTTAATACAAAAATTGGGAACACAGATATACAAGAAACTATCTTCATGTATTTCACAAGATCACACACCTATAATGCAGAATCTAAAAAATGTTTGTTCAATTAATAGATCAGCCAGCATCATGGGATCAAGGACATGAGCATCATATCCGATAGCCATGTAAACGCTTAGCCCATCGTCTAGCCATGAATGGATCATGGTATTCCCAGCCCTCAACGCTACTACTTCTTCCACCAGTGTTCTCAACAATGTCAATAGTATCCGTCAGTTCTTTCCTGTCACCAACTCCGACTACAACTTCACCTGTTTTAACAGAATCATCCATCATGCAATCAATGTAGGTATATACCACGCGAACTTTGTCCATATCTTCCAAAAGCAATGGAATTCTCCTCTCCTCACCCCCTCGCAATTCTCCAAGCCTCACGATCCTTGTGTCCTCTCCAATCATCAATGCAATATCTCTAACTGCACCACATAGTATTTTAGCAAGAAATCTCTCAAACTCGTGCATGACGAATCCATTTGAAGTACCAAATCCAAATCCCACATGAAACTTATGGATTGTAATGGGAAGTTCCAAGTGAAACC</gDNA_template>
            <first_frame> L  *  N  I  I  S  T  S  *  Q  F  N  Q  S  Y  *  I  L  *  Y  K  N  W  E  H  R  Y  T  R  N  Y  L  H  V  F  H  K  I  T  H  L  *  C  R  I  *  K  M  F  V  Q  L  I  D  Q  P  A  S  W  D  Q  G  H  E  H  H  I  R  *  P  C  K  R  L  A  H  R  L  A  M  N  G  S  W  Y  S  Q  P  S  T  L  L  L  L  P  P  V  F  S  T  M  S  I  V  S  V  S  S  F  L  S  P  T  P  T  T  T  S  P  V  L  T  E  S  S  I  M  Q  S  M  *  V  Y  T  T  R  T  L  S  I  S  S  K  S  N  G  I  L  L  S  S  P  P  R  N  S  P  S  L  T  I  L  V  S  S  P  I  I  N  A  I  S  L  T  A  P  H  S  I  L  A  R  N  L  S  N  S  C  M  T  N  P  F  E  V  P  N  P  N  P  T  *  N  L  W  I  V  M  G  S  S  K  *  N  </first_frame>
            <second_frame>  C  K  I  L  *  A  L  H  N  S  S  I  N  H  I  R  F  F  N  T  K  I  G  N  T  D  I  Q  E  T  I  F  M  Y  F  T  R  S  H  T  Y  N  A  E  S  K  K  C  L  F  N  *  *  I  S  Q  H  H  G  I  K  D  M  S  I  I  S  D  S  H  V  N  A  *  P  I  V  *  P  *  M  D  H  G  I  P  S  P  Q  R  Y  Y  F  F  H  Q  C  S  Q  Q  C  Q  *  Y  P  S  V  L  S  C  H  Q  L  R  L  Q  L  H  L  F  *  Q  N  H  P  S  C  N  Q  C  R  Y  I  P  R  E  L  C  P  Y  L  P  K  A  M  E  F  S  S  P  H  P  L  A  I  L  Q  A  S  R  S  L  C  P  L  Q  S  S  M  Q  Y  L  *  L  H  H  I  V  F  *  Q  E  I  S  Q  T  R  A  *  R  I  H  L  K  Y  Q  I  Q  I  P  H  E  T  Y  G  L  *  W  E  V  P  S  E  T </second_frame>
            <third_frame>   V  K  Y  Y  K  H  F  I  T  V  Q  S  I  I  L  D  S  L  I  Q  K  L  G  T  Q  I  Y  K  K  L  S  S  C  I  S  Q  D  H  T  P  I  M  Q  N  L  K  N  V  C  S  I  N  R  S  A  S  I  M  G  S  R  T  *  A  S  Y  P  I  A  M  *  T  L  S  P  S  S  S  H  E  W  I  M  V  F  P  A  L  N  A  T  T  S  S  T  S  V  L  N  N  V  N  S  I  R  Q  F  F  P  V  T  N  S  D  Y  N  F  T  C  F  N  R  I  I  H  H  A  I  N  V  G  I  Y  H  A  N  F  V  H  I  F  Q  K  Q  W  N  S  P  L  L  T  P  S  Q  F  S  K  P  H  D  P  C  V  L  S  N  H  Q  C  N  I  S  N  C  T  T  *  Y  F  S  K  K  S  L  K  L  V  H  D  E  S  I  *  S  T  K  S  K  S  H  M  K  L  M  D  C  N  G  K  F  Q  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107049" stop="106732"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSPSSSHEWIMVFPALNATTSSTSVLNNVNSIRQFFPVTNSDYNFTCFNRIIHHAINVGIYHANFVHIFQKQWNSPLLTPSQFSKPHDPCVLSNHQCNISNCTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="109829" PGL_stop="115610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114262" e_stop="114608"/>
            <exon e_start="114723" e_stop="114792"/>
            <exon e_start="114941" e_stop="115610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="0.925"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="114262" e_stop="114608" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="114609" i_stop="114722" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114723" e_stop="114792" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="114941" e_stop="115610" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114262" stop="114608"/>
              <exon start="114723" stop="114792"/>
              <exon start="114941" stop="115285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114752" stop="114792"/>
              <exon start="114941" stop="115576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115008" stop="115610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTGTGTACTGATTTGGAATGTAGACTCCAGCAACTCTGTTTACCCCCTCATTTCTTCTTTAAAATAAGCCCAAAAGATGAAAAATGGAAAAATGCAGGAAGAATATCATAAACTTGGGCAGTGATGTGTGAAGCTTACAGAATAACCAAGAAGACACTGATTTTGTTTATGTGTGAGATCAGATCAGTGCAGGAAAGGCTATAGGAAGACATCTTTTTTGAATTTTTCTTTTTTATTGAAACTGGGTTCTTGTTCTGCATTGAAGGACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGA : AGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAA : GCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTTGAAAAAGAAAAAAAGAGAAGAAAATTGAGATTCCATTTGCTTTT</gDNA_template>
            <first_frame> T  L  C  T  D  L  E  C  R  L  Q  Q  L  C  L  P  P  H  F  F  F  K  I  S  P  K  D  E  K  W  K  N  A  G  R  I  S  *  T  W  A  V  M  C  E  A  Y  R  I  T  K  K  T  L  I  L  F  M  C  E  I  R  S  V  Q  E  R  L  *  E  D  I  F  F  E  F  F  F  F  I  E  T  G  F  L  F  C  I  E  G  L  T  A  T  Y  S  L  E  S  P  C  S  G  G  T  P  Q  Q  L  P  A  S  D  L  N  E :   G  F  E  V  K  E  A  L  R  A  Q  M  E  V  Q  S  K  L  H  L  Q  V  E  :  A  E  K  H  L  Q  I  R  Q  D  A  E  Q  R  Y  I  T  M  L  E  K  A  C  K  M  L  A  D  Q  F  I  G  D  V  V  T  E  N  H  Q  E  T  Y  Q  G  L  N  T  K  T  Q  L  S  P  L  C  N  P  H  G  L  C  P  S  E  S  A  D  F  V  G  V  H  G  P  E  D  V  S  P  R  I  H  P  Q  R  T  D  C  S  T  E  S  C  L  T  S  H  E  S  P  A  G  L  P  V  E  G  S  S  P  G  G  K  K  R  G  L  S  G  D  S  T  Q  A  S  Y  V  W  G  E  A  D  M  R  S  S  G  V  H  V  L  P  V  N  C  F  G  I  S  G  S  N  V  Q  N  V  S  N  *  E  I  K  P  S  P  S  I  V  I  A  L  H  I  A  V  S  G  K  S  N  E  P  N  L  K  L  C  K  C  K  L  M  L  F  *  L  L  T  A  S  L  *  N  H  L  S  S  L  K  K  K  K  R  E  E  N  *  D  S  I  C  F  </first_frame>
            <second_frame>  H  C  V  L  I  W  N  V  D  S  S  N  S  V  Y  P  L  I  S  S  L  K  *  A  Q  K  M  K  N  G  K  M  Q  E  E  Y  H  K  L  G  Q  *  C  V  K  L  T  E  *  P  R  R  H  *  F  C  L  C  V  R  S  D  Q  C  R  K  G  Y  R  K  T  S  F  L  N  F  S  F  L  L  K  L  G  S  C  S  A  L  K  D  L  Q  L  R  I  H  *  K  A  L  V  L  V  V  L  L  S  S  C  L  H  Q  T  *  M   : K  V  L  K  S  R  R  H  *  E  L  K  W  K  C  K  V  N  C  T  S  K  L  K :   L  R  S  T  C  K  F  G  R  M  L  N  K  D  I  L  P  C  W  R  R  P  V  K  C  S  L  I  N  S  S  V  M  *  L  L  K  I  T  K  R  L  T  K  D  *  I  R  R  H  N  L  A  L  Y  V  I  H  M  D  C  A  P  R  S  L  L  T  L  L  E  S  M  V  Q  K  T  F  P  P  E  S  I  H  N  A  R  I  V  P  L  K  A  A  *  L  R  M  R  A  P  L  D  F  L  *  K  D  L  H  L  E  G  K  S  E  G  L  V  V  I  Q  H  K  H  H  M  F  G  V  K  Q  I  *  D  H  P  V  F  T  C  Y  Q  L  I  A  L  V  F  L  A  L  M  F  K  M  S  L  I  K  R  L  S  Q  V  R  P  *  S  L  L  C  T  L  Q  F  L  G  S  P  M  S  P  T  *  N  C  V  N  A  S  *  C  Y  S  N  S  *  L  H  L  C  E  I  I  L  V  P  *  K  R  K  K  E  K  K  I  E  I  P  F  A  F </second_frame>
            <third_frame>   I  V  Y  *  F  G  M  *  T  P  A  T  L  F  T  P  S  F  L  L  *  N  K  P  K  R  *  K  M  E  K  C  R  K  N  I  I  N  L  G  S  D  V  *  S  L  Q  N  N  Q  E  D  T  D  F  V  Y  V  *  D  Q  I  S  A  G  K  A  I  G  R  H  L  F  *  I  F  L  F  Y  *  N  W  V  L  V  L  H  *  R  T  Y  S  Y  V  F  I  R  K  P  L  F  W  W  Y  S  S  A  V  A  C  I  R  L  E  *  :  R  F  *  S  Q  G  G  I  E  S  S  N  G  S  A  K  *  I  A  P  P  S  *   : S  *  E  A  L  A  N  S  A  G  C  *  T  K  I  Y  Y  H  A  G  E  G  L  *  N  A  R  *  S  I  H  R  *  C  S  Y  *  K  S  P  R  D  L  P  R  T  K  Y  E  D  T  T  *  P  F  M  *  S  T  W  I  V  P  L  G  V  C  *  L  C  W  S  P  W  S  R  R  R  F  P  Q  N  P  S  T  T  H  G  L  F  H  *  K  L  L  N  F  A  *  E  P  R  W  T  S  C  R  R  I  F  T  W  R  E  K  A  R  A  *  W  *  F  N  T  S  I  I  C  L  G  *  S  R  Y  E  I  I  R  C  S  R  A  T  S  *  L  L  W  Y  F  W  L  *  C  S  K  C  L  *  L  R  D  *  A  K  S  V  H  S  H  C  F  A  H  C  S  F  W  E  V  Q  *  A  Q  L  K  T  V  *  M  Q  A  D  V  I  L  T  L  N  C  I  S  V  K  S  S  *  F  L  E  K  E  K  K  R  R  K  L  R  F  H  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114469" stop="114608"/>
                    <exon start="114723" stop="114792"/>
                    <exon start="114941" stop="115420"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDIFFEFFFFIETGFLFCIEGLTATYSLESPCSGGTPQQLPASDLNEGFEVKEALRAQMEVQSKLHLQVEAEKHLQIRQDAEQRYITMLEKACKMLADQFIGDVVTENHQETYQGLNTKTQLSPLCNPHGLCPSESADFVGVHGPEDVSPRIHPQRTDCSTESCLTSHESPAGLPVEGSSPGGKKRGLSGDSTQASYVWGEADMRSSGVHVLPVNCFGISGSNVQNVSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113704" e_stop="113717"/>
            <exon e_start="113904" e_stop="113916"/>
            <exon e_start="114530" e_stop="114608"/>
            <exon e_start="114723" e_stop="114792"/>
            <exon e_start="114941" e_stop="115610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="0.857"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.857">
            <gDNA_exon_boundary e_start="113704" e_stop="113717" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113718" i_stop="113903" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113904" e_stop="113916" e_length="13"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113917" i_stop="114529" i_length="613"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114530" e_stop="114608" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="114609" i_stop="114722" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114723" e_stop="114792" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="114941" e_stop="115610" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113704" stop="113717"/>
              <exon start="113904" stop="113916"/>
              <exon start="114530" stop="114608"/>
              <exon start="114723" stop="114792"/>
              <exon start="114941" stop="115593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114752" stop="114792"/>
              <exon start="114941" stop="115576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115008" stop="115610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCCACCTTCAG : AAATACCGACTAG : GACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGA : AGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAA : GCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTTGAAAAAGAAAAAAAGAGAAGAAAATTGAGATTCCATTTGCTTTT</gDNA_template>
            <first_frame> R  A  T  F  R :   N  T  D  *  :  D  L  Q  L  R  I  H  *  K  A  L  V  L  V  V  L  L  S  S  C  L  H  Q  T  *  M   : K  V  L  K  S  R  R  H  *  E  L  K  W  K  C  K  V  N  C  T  S  K  L  K :   L  R  S  T  C  K  F  G  R  M  L  N  K  D  I  L  P  C  W  R  R  P  V  K  C  S  L  I  N  S  S  V  M  *  L  L  K  I  T  K  R  L  T  K  D  *  I  R  R  H  N  L  A  L  Y  V  I  H  M  D  C  A  P  R  S  L  L  T  L  L  E  S  M  V  Q  K  T  F  P  P  E  S  I  H  N  A  R  I  V  P  L  K  A  A  *  L  R  M  R  A  P  L  D  F  L  *  K  D  L  H  L  E  G  K  S  E  G  L  V  V  I  Q  H  K  H  H  M  F  G  V  K  Q  I  *  D  H  P  V  F  T  C  Y  Q  L  I  A  L  V  F  L  A  L  M  F  K  M  S  L  I  K  R  L  S  Q  V  R  P  *  S  L  L  C  T  L  Q  F  L  G  S  P  M  S  P  T  *  N  C  V  N  A  S  *  C  Y  S  N  S  *  L  H  L  C  E  I  I  L  V  P  *  K  R  K  K  E  K  K  I  E  I  P  F  A  F </first_frame>
            <second_frame>  E  P  P  S   : E  I  P  T  R :   T  Y  S  Y  V  F  I  R  K  P  L  F  W  W  Y  S  S  A  V  A  C  I  R  L  E  *  :  R  F  *  S  Q  G  G  I  E  S  S  N  G  S  A  K  *  I  A  P  P  S  *   : S  *  E  A  L  A  N  S  A  G  C  *  T  K  I  Y  Y  H  A  G  E  G  L  *  N  A  R  *  S  I  H  R  *  C  S  Y  *  K  S  P  R  D  L  P  R  T  K  Y  E  D  T  T  *  P  F  M  *  S  T  W  I  V  P  L  G  V  C  *  L  C  W  S  P  W  S  R  R  R  F  P  Q  N  P  S  T  T  H  G  L  F  H  *  K  L  L  N  F  A  *  E  P  R  W  T  S  C  R  R  I  F  T  W  R  E  K  A  R  A  *  W  *  F  N  T  S  I  I  C  L  G  *  S  R  Y  E  I  I  R  C  S  R  A  T  S  *  L  L  W  Y  F  W  L  *  C  S  K  C  L  *  L  R  D  *  A  K  S  V  H  S  H  C  F  A  H  C  S  F  W  E  V  Q  *  A  Q  L  K  T  V  *  M  Q  A  D  V  I  L  T  L  N  C  I  S  V  K  S  S  *  F  L  E  K  E  K  K  R  R  K  L  R  F  H  L  L   </second_frame>
            <third_frame>   S  H  L  Q  :  K  Y  R  L   : G  L  T  A  T  Y  S  L  E  S  P  C  S  G  G  T  P  Q  Q  L  P  A  S  D  L  N  E :   G  F  E  V  K  E  A  L  R  A  Q  M  E  V  Q  S  K  L  H  L  Q  V  E  :  A  E  K  H  L  Q  I  R  Q  D  A  E  Q  R  Y  I  T  M  L  E  K  A  C  K  M  L  A  D  Q  F  I  G  D  V  V  T  E  N  H  Q  E  T  Y  Q  G  L  N  T  K  T  Q  L  S  P  L  C  N  P  H  G  L  C  P  S  E  S  A  D  F  V  G  V  H  G  P  E  D  V  S  P  R  I  H  P  Q  R  T  D  C  S  T  E  S  C  L  T  S  H  E  S  P  A  G  L  P  V  E  G  S  S  P  G  G  K  K  R  G  L  S  G  D  S  T  Q  A  S  Y  V  W  G  E  A  D  M  R  S  S  G  V  H  V  L  P  V  N  C  F  G  I  S  G  S  N  V  Q  N  V  S  N  *  E  I  K  P  S  P  S  I  V  I  A  L  H  I  A  V  S  G  K  S  N  E  P  N  L  K  L  C  K  C  K  L  M  L  F  *  L  L  T  A  S  L  *  N  H  L  S  S  L  K  K  K  K  R  E  E  N  *  D  S  I  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113706" stop="113717"/>
                    <exon start="113904" stop="113916"/>
                    <exon start="114530" stop="114608"/>
                    <exon start="114723" stop="114792"/>
                    <exon start="114941" stop="115420"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHLQKYRLGLTATYSLESPCSGGTPQQLPASDLNEGFEVKEALRAQMEVQSKLHLQVEAEKHLQIRQDAEQRYITMLEKACKMLADQFIGDVVTENHQETYQGLNTKTQLSPLCNPHGLCPSESADFVGVHGPEDVSPRIHPQRTDCSTESCLTSHESPAGLPVEGSSPGGKKRGLSGDSTQASYVWGEADMRSSGVHVLPVNCFGISGSNVQNVSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109839" e_stop="110164"/>
            <exon e_start="113641" e_stop="113717"/>
            <exon e_start="113904" e_stop="113958"/>
            <exon e_start="114530" e_stop="114608"/>
            <exon e_start="114723" e_stop="114792"/>
            <exon e_start="114941" e_stop="115610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.582" e_score="0.979"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.645" acc_prob="0.980" e_score="0.982"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="109839" e_stop="110164" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.582">
            <gDNA_intron_boundary i_start="110165" i_stop="113640" i_length="3476"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="113641" e_stop="113717" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113718" i_stop="113903" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="113904" e_stop="113958" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.645" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113959" i_stop="114529" i_length="571"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114530" e_stop="114608" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="114609" i_stop="114722" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114723" e_stop="114792" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114793" i_stop="114940" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="0.958">
            <gDNA_exon_boundary e_start="114941" e_stop="115610" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109839" stop="110164"/>
              <exon start="113641" stop="113717"/>
              <exon start="113904" stop="113958"/>
              <exon start="114530" stop="114608"/>
              <exon start="114723" stop="114792"/>
              <exon start="114941" stop="115025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114752" stop="114792"/>
              <exon start="114941" stop="115576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115008" stop="115610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGGCGAAAACCCCAAAATTTTGCTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATTGATACAGTAAAACTTGTTGAAAATTCGACTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTA : AAGCTACTCCAAAGGCAATAATGCGGACAATGGGAGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAG : AAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAAGCTTCAAAAGATG : GACTTACAGCTACGTATTCATTAGAAAGCCCTTGTTCTGGTGGTACTCCTCAGCAGTTGCCTGCATCAGACTTGAATGA : AGGTTTTGAAGTCAAGGAGGCATTGAGAGCTCAAATGGAAGTGCAAAGTAAATTGCACCTCCAAGTTGAA : GCTGAGAAGCACTTGCAAATTCGGCAGGATGCTGAACAAAGATATATTACCATGCTGGAGAAGGCCTGTAAAATGCTCGCTGATCAATTCATCGGTGATGTAGTTACTGAAAATCACCAAGAGACTTACCAAGGACTAAATACGAAGACACAACTTAGCCCTTTATGTAATCCACATGGATTGTGCCCCTCGGAGTCTGCTGACTTTGTTGGAGTCCATGGTCCAGAAGACGTTTCCCCCAGAATCCATCCACAACGCACGGATTGTTCCACTGAAAGCTGCTTAACTTCGCATGAGAGCCCCGCTGGACTTCCTGTAGAAGGATCTTCACCTGGAGGGAAAAAGCGAGGGCTTAGTGGTGATTCAACACAAGCATCATATGTTTGGGGTGAAGCAGATATGAGATCATCCGGTGTTCACGTGCTACCAGTTAATTGCTTTGGTATTTCTGGCTCTAATGTTCAAAATGTCTCTAATTAAGAGATTAAGCCAAGTCCGTCCATAGTCATTGCTTTGCACATTGCAGTTTCTGGGAAGTCCAATGAGCCCAACTTAAAACTGTGTAAATGCAAGCTGATGTTATTCTAACTCTTAACTGCATCTCTGTGAAATCATCTTAGTTCCTTGAAAAAGAAAAAAAGAGAAGAAAATTGAGATTCCATTTGCTTTT</gDNA_template>
            <first_frame> G  W  R  K  P  Q  N  F  A  T  Y  P  L  N  L  H  S  I  L  *  K  L  L  N  *  Y  S  K  T  C  *  K  F  D  Y  R  S  K  R  C  *  F  N  V  S  Q  I  D  S  I  A  R  R  *  I  Y  S  W  V  *  C  *  C  R  D  S  S  S  *  *  G  *  W  R  P  L  S  C  V  N  F  R  S  Q  T  S  S  S  M  D  C  *  S  S  *  T  I  H  *  C  C  Y  S  T  W  R  T  Q  * :   S  Y  S  K  G  N  N  A  D  N  G  S  Q  G  T  D  S  L  P  P  K  E  P  P  S   : E  I  P  T  R  *  A  I  S  E  R  S  *  *  S  F  K  R  W :   T  Y  S  Y  V  F  I  R  K  P  L  F  W  W  Y  S  S  A  V  A  C  I  R  L  E  *  :  R  F  *  S  Q  G  G  I  E  S  S  N  G  S  A  K  *  I  A  P  P  S  *   : S  *  E  A  L  A  N  S  A  G  C  *  T  K  I  Y  Y  H  A  G  E  G  L  *  N  A  R  *  S  I  H  R  *  C  S  Y  *  K  S  P  R  D  L  P  R  T  K  Y  E  D  T  T  *  P  F  M  *  S  T  W  I  V  P  L  G  V  C  *  L  C  W  S  P  W  S  R  R  R  F  P  Q  N  P  S  T  T  H  G  L  F  H  *  K  L  L  N  F  A  *  E  P  R  W  T  S  C  R  R  I  F  T  W  R  E  K  A  R  A  *  W  *  F  N  T  S  I  I  C  L  G  *  S  R  Y  E  I  I  R  C  S  R  A  T  S  *  L  L  W  Y  F  W  L  *  C  S  K  C  L  *  L  R  D  *  A  K  S  V  H  S  H  C  F  A  H  C  S  F  W  E  V  Q  *  A  Q  L  K  T  V  *  M  Q  A  D  V  I  L  T  L  N  C  I  S  V  K  S  S  *  F  L  E  K  E  K  K  R  R  K  L  R  F  H  L  L   </first_frame>
            <second_frame>  V  G  E  N  P  K  I  L  L  L  T  L  *  I  C  I  Q  F  Y  E  N  C  L  I  D  T  V  K  L  V  E  N  S  T  T  E  A  K  G  V  D  S  M  F  P  R  L  I  Q  S  Q  E  D  E  F  I  H  G  C  D  V  N  V  G  I  H  H  H  N  R  V  N  G  D  P  C  L  V  L  T  S  D  P  K  P  R  L  R  W  T  A  D  L  H  E  R  F  I  D  A  V  T  Q  L  G  G  P  S   : K  A  T  P  K  A  I  M  R  T  M  G  V  K  G  L  T  L  F  H  L  K  S  H  L  Q  :  K  Y  R  L  G  K  Q  S  Q  K  D  L  D  E  A  S  K  D   : G  L  T  A  T  Y  S  L  E  S  P  C  S  G  G  T  P  Q  Q  L  P  A  S  D  L  N  E :   G  F  E  V  K  E  A  L  R  A  Q  M  E  V  Q  S  K  L  H  L  Q  V  E  :  A  E  K  H  L  Q  I  R  Q  D  A  E  Q  R  Y  I  T  M  L  E  K  A  C  K  M  L  A  D  Q  F  I  G  D  V  V  T  E  N  H  Q  E  T  Y  Q  G  L  N  T  K  T  Q  L  S  P  L  C  N  P  H  G  L  C  P  S  E  S  A  D  F  V  G  V  H  G  P  E  D  V  S  P  R  I  H  P  Q  R  T  D  C  S  T  E  S  C  L  T  S  H  E  S  P  A  G  L  P  V  E  G  S  S  P  G  G  K  K  R  G  L  S  G  D  S  T  Q  A  S  Y  V  W  G  E  A  D  M  R  S  S  G  V  H  V  L  P  V  N  C  F  G  I  S  G  S  N  V  Q  N  V  S  N  *  E  I  K  P  S  P  S  I  V  I  A  L  H  I  A  V  S  G  K  S  N  E  P  N  L  K  L  C  K  C  K  L  M  L  F  *  L  L  T  A  S  L  *  N  H  L  S  S  L  K  K  K  K  R  E  E  N  *  D  S  I  C  F  </second_frame>
            <third_frame>   L  A  K  T  P  K  F  C  Y  L  P  F  E  S  A  F  N  S  M  K  I  A  *  L  I  Q  *  N  L  L  K  I  R  L  Q  K  Q  K  V  L  I  Q  C  F  P  D  *  F  N  R  K  K  M  N  L  F  M  G  V  M  L  M  S  G  F  I  I  I  I  G  L  M  E  T  L  V  L  C  *  L  Q  I  P  N  L  V  F  D  G  L  L  I  F  M  N  D  S  L  M  L  L  L  N  L  A  D  P  V  :  K  L  L  Q  R  Q  *  C  G  Q  W  E  S  R  D  *  L  S  S  T  *  R  A  T  F  R :   N  T  D  *  V  S  N  L  R  K  I  L  M  K  L  Q  K  M  :  D  L  Q  L  R  I  H  *  K  A  L  V  L  V  V  L  L  S  S  C  L  H  Q  T  *  M   : K  V  L  K  S  R  R  H  *  E  L  K  W  K  C  K  V  N  C  T  S  K  L  K :   L  R  S  T  C  K  F  G  R  M  L  N  K  D  I  L  P  C  W  R  R  P  V  K  C  S  L  I  N  S  S  V  M  *  L  L  K  I  T  K  R  L  T  K  D  *  I  R  R  H  N  L  A  L  Y  V  I  H  M  D  C  A  P  R  S  L  L  T  L  L  E  S  M  V  Q  K  T  F  P  P  E  S  I  H  N  A  R  I  V  P  L  K  A  A  *  L  R  M  R  A  P  L  D  F  L  *  K  D  L  H  L  E  G  K  S  E  G  L  V  V  I  Q  H  K  H  H  M  F  G  V  K  Q  I  *  D  H  P  V  F  T  C  Y  Q  L  I  A  L  V  F  L  A  L  M  F  K  M  S  L  I  K  R  L  S  Q  V  R  P  *  S  L  L  C  T  L  Q  F  L  G  S  P  M  S  P  T  *  N  C  V  N  A  S  *  C  Y  S  N  S  *  L  H  L  C  E  I  I  L  V  P  *  K  R  K  K  E  K  K  I  E  I  P  F  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109879" stop="110164"/>
                    <exon start="113641" stop="113717"/>
                    <exon start="113904" stop="113958"/>
                    <exon start="114530" stop="114608"/>
                    <exon start="114723" stop="114792"/>
                    <exon start="114941" stop="115420"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIQFYENCLIDTVKLVENSTTEAKGVDSMFPRLIQSQEDEFIHGCDVNVGIHHHNRVNGDPCLVLTSDPKPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRLGKQSQKDLDEASKDGLTATYSLESPCSGGTPQQLPASDLNEGFEVKEALRAQMEVQSKLHLQVEAEKHLQIRQDAEQRYITMLEKACKMLADQFIGDVVTENHQETYQGLNTKTQLSPLCNPHGLCPSESADFVGVHGPEDVSPRIHPQRTDCSTESCLTSHESPAGLPVEGSSPGGKKRGLSGDSTQASYVWGEADMRSSGVHVLPVNCFGISGSNVQNVSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="109846" e_stop="110164"/>
            <exon e_start="113641" e_stop="113943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.582" e_score="0.981"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="109846" e_stop="110164" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.582">
            <gDNA_intron_boundary i_start="110165" i_stop="113640" i_length="3476"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="113641" e_stop="113943" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109846" stop="110164"/>
              <exon start="113641" stop="113943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACCCCAAAATTTTGCTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATTGATACAGTAAAACTTGTTGAAAATTCGACTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTA : AAGCTACTCCAAAGGCAATAATGCGGACAATGGGAGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAGGTCTGTCAGAATACATTAGATTTTTTTCTTATTTGTCTCACAAGCCCACCGCACATCCTTCACTTAAGTCCCAGATGTAAAGAGGAGGAGGTGGGCGGTGGAGCAAAACATGTATGTTTTCTAATGAGCTTAAAATCAAATGTTTTTTGATCAATTTTTAACTATGATGTTGTTTGTTCACTGCAGAAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATG</gDNA_template>
            <first_frame> E  N  P  K  I  L  L  L  T  L  *  I  C  I  Q  F  Y  E  N  C  L  I  D  T  V  K  L  V  E  N  S  T  T  E  A  K  G  V  D  S  M  F  P  R  L  I  Q  S  Q  E  D  E  F  I  H  G  C  D  V  N  V  G  I  H  H  H  N  R  V  N  G  D  P  C  L  V  L  T  S  D  P  K  P  R  L  R  W  T  A  D  L  H  E  R  F  I  D  A  V  T  Q  L  G  G  P  S   : K  A  T  P  K  A  I  M  R  T  M  G  V  K  G  L  T  L  F  H  L  K  S  H  L  Q  V  C  Q  N  T  L  D  F  F  L  I  C  L  T  S  P  P  H  I  L  H  L  S  P  R  C  K  E  E  E  V  G  G  G  A  K  H  V  C  F  L  M  S  L  K  S  N  V  F  *  S  I  F  N  Y  D  V  V  C  S  L  Q  K  Y  R  L  G  K  Q  S  Q  K  D  L  D  </first_frame>
            <second_frame>  K  T  P  K  F  C  Y  L  P  F  E  S  A  F  N  S  M  K  I  A  *  L  I  Q  *  N  L  L  K  I  R  L  Q  K  Q  K  V  L  I  Q  C  F  P  D  *  F  N  R  K  K  M  N  L  F  M  G  V  M  L  M  S  G  F  I  I  I  I  G  L  M  E  T  L  V  L  C  *  L  Q  I  P  N  L  V  F  D  G  L  L  I  F  M  N  D  S  L  M  L  L  L  N  L  A  D  P  V  :  K  L  L  Q  R  Q  *  C  G  Q  W  E  S  R  D  *  L  S  S  T  *  R  A  T  F  R  S  V  R  I  H  *  I  F  F  L  F  V  S  Q  A  H  R  T  S  F  T  *  V  P  D  V  K  R  R  R  W  A  V  E  Q  N  M  Y  V  F  *  *  A  *  N  Q  M  F  F  D  Q  F  L  T  M  M  L  F  V  H  C  R  N  T  D  *  V  S  N  L  R  K  I  L  M </second_frame>
            <third_frame>   K  P  Q  N  F  A  T  Y  P  L  N  L  H  S  I  L  *  K  L  L  N  *  Y  S  K  T  C  *  K  F  D  Y  R  S  K  R  C  *  F  N  V  S  Q  I  D  S  I  A  R  R  *  I  Y  S  W  V  *  C  *  C  R  D  S  S  S  *  *  G  *  W  R  P  L  S  C  V  N  F  R  S  Q  T  S  S  S  M  D  C  *  S  S  *  T  I  H  *  C  C  Y  S  T  W  R  T  Q  * :   S  Y  S  K  G  N  N  A  D  N  G  S  Q  G  T  D  S  L  P  P  K  E  P  P  S  G  L  S  E  Y  I  R  F  F  S  Y  L  S  H  K  P  T  A  H  P  S  L  K  S  Q  M  *  R  G  G  G  G  R  W  S  K  T  C  M  F  S  N  E  L  K  I  K  C  F  L  I  N  F  *  L  *  C  C  L  F  T  A  E  I  P  T  R  *  A  I  S  E  R  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109879" stop="110164"/>
                    <exon start="113641" stop="113867"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIQFYENCLIDTVKLVENSTTEAKGVDSMFPRLIQSQEDEFIHGCDVNVGIHHHNRVNGDPCLVLTSDPKPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQVCQNTLDFFLICLTSPPHILHLSPRCKEEEVGGGAKHVCFLMSLKSNVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="109829" e_stop="110164"/>
            <exon e_start="113641" e_stop="113717"/>
            <exon e_start="113904" e_stop="114069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.582" e_score="0.985"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="0.961"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="109829" e_stop="110164" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.582">
            <gDNA_intron_boundary i_start="110165" i_stop="113640" i_length="3476"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="113641" e_stop="113717" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113718" i_stop="113903" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="113904" e_stop="114069" e_length="166"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109829" stop="110164"/>
              <exon start="113641" stop="113717"/>
              <exon start="113904" stop="114069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACTTTGGGGTTGGCGAAAACCCCAAAATTTTGCTACTTACCCTTTGAATCTGCATTCAATTCTATGAAAATTGCTTAATTGATACAGTAAAACTTGTTGAAAATTCGACTACAGAAGCAAAAGGTGTTGATTCAATGTTTCCCAGATTGATTCAATCGCAAGAAGATGAATTTATTCATGGGTGTGATGTTAATGTCGGGATTCATCATCATAATAGGGTTAATGGAGACCCTTGTCTTGTGTTAACTTCAGATCCCAAACCTCGTCTTCGATGGACTGCTGATCTTCATGAACGATTCATTGATGCTGTTACTCAACTTGGCGGACCCAGTA : AAGCTACTCCAAAGGCAATAATGCGGACAATGGGAGTCAAGGGACTGACTCTCTTCCACCTAAAGAGCCACCTTCAG : AAATACCGACTAGGTAAGCAATCTCAGAAAGATCTTGATGAAGCTTCAAAAGATGGTAGGTATAGTTGACCCATGTTTTCCTATAACTGGAAACGTGGTTGCTCCTGTAGTTTCACAAGTCTCTTGGCAGTTGGCATATAACCTTCACCATTTCAAAAAGAAAAAG</gDNA_template>
            <first_frame> L  T  L  G  L  A  K  T  P  K  F  C  Y  L  P  F  E  S  A  F  N  S  M  K  I  A  *  L  I  Q  *  N  L  L  K  I  R  L  Q  K  Q  K  V  L  I  Q  C  F  P  D  *  F  N  R  K  K  M  N  L  F  M  G  V  M  L  M  S  G  F  I  I  I  I  G  L  M  E  T  L  V  L  C  *  L  Q  I  P  N  L  V  F  D  G  L  L  I  F  M  N  D  S  L  M  L  L  L  N  L  A  D  P  V  :  K  L  L  Q  R  Q  *  C  G  Q  W  E  S  R  D  *  L  S  S  T  *  R  A  T  F  R :   N  T  D  *  V  S  N  L  R  K  I  L  M  K  L  Q  K  M  V  G  I  V  D  P  C  F  P  I  T  G  N  V  V  A  P  V  V  S  Q  V  S  W  Q  L  A  Y  N  L  H  H  F  K  K  K  K </first_frame>
            <second_frame>  *  L  W  G  W  R  K  P  Q  N  F  A  T  Y  P  L  N  L  H  S  I  L  *  K  L  L  N  *  Y  S  K  T  C  *  K  F  D  Y  R  S  K  R  C  *  F  N  V  S  Q  I  D  S  I  A  R  R  *  I  Y  S  W  V  *  C  *  C  R  D  S  S  S  *  *  G  *  W  R  P  L  S  C  V  N  F  R  S  Q  T  S  S  S  M  D  C  *  S  S  *  T  I  H  *  C  C  Y  S  T  W  R  T  Q  * :   S  Y  S  K  G  N  N  A  D  N  G  S  Q  G  T  D  S  L  P  P  K  E  P  P  S   : E  I  P  T  R  *  A  I  S  E  R  S  *  *  S  F  K  R  W  *  V  *  L  T  H  V  F  L  *  L  E  T  W  L  L  L  *  F  H  K  S  L  G  S  W  H  I  T  F  T  I  S  K  R  K   </second_frame>
            <third_frame>   D  F  G  V  G  E  N  P  K  I  L  L  L  T  L  *  I  C  I  Q  F  Y  E  N  C  L  I  D  T  V  K  L  V  E  N  S  T  T  E  A  K  G  V  D  S  M  F  P  R  L  I  Q  S  Q  E  D  E  F  I  H  G  C  D  V  N  V  G  I  H  H  H  N  R  V  N  G  D  P  C  L  V  L  T  S  D  P  K  P  R  L  R  W  T  A  D  L  H  E  R  F  I  D  A  V  T  Q  L  G  G  P  S   : K  A  T  P  K  A  I  M  R  T  M  G  V  K  G  L  T  L  F  H  L  K  S  H  L  Q  :  K  Y  R  L  G  K  Q  S  Q  K  D  L  D  E  A  S  K  D  G  R  Y  S  *  P  M  F  S  Y  N  W  K  R  G  C  S  C  S  F  T  S  L  L  A  V  G  I  *  P  S  P  F  Q  K  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109879" stop="110164"/>
                    <exon start="113641" stop="113717"/>
                    <exon start="113904" stop="113972"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIQFYENCLIDTVKLVENSTTEAKGVDSMFPRLIQSQEDEFIHGCDVNVGIHHHNRVNGDPCLVLTSDPKPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRLGKQSQKDLDEASKDGRYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="126782" PGL_stop="118464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126782" e_stop="126412"/>
            <exon e_start="124661" e_stop="124580"/>
            <exon e_start="124471" e_stop="124368"/>
            <exon e_start="124100" e_stop="123974"/>
            <exon e_start="123894" e_stop="123800"/>
            <exon e_start="123635" e_stop="123512"/>
            <exon e_start="122870" e_stop="122790"/>
            <exon e_start="122549" e_stop="122451"/>
            <exon e_start="122371" e_stop="122189"/>
            <exon e_start="118778" e_stop="118638"/>
            <exon e_start="118508" e_stop="118464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.984"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.662" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.139" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.481" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.750" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126782" e_stop="126412" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126411" i_stop="124662" i_length="1750"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124661" e_stop="124580" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124579" i_stop="124472" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124471" e_stop="124368" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.918" acc_prob="0.896">
            <gDNA_intron_boundary i_start="124367" i_stop="124101" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="124100" e_stop="123974" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123973" i_stop="123895" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123894" e_stop="123800" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123799" i_stop="123636" i_length="164"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123635" e_stop="123512" e_length="124"/>
          </exon>
          <intron i_serial="6" don_prob="0.662" acc_prob="0.996">
            <gDNA_intron_boundary i_start="123511" i_stop="122871" i_length="641"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="122870" e_stop="122790" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.139" acc_prob="0.995">
            <gDNA_intron_boundary i_start="122789" i_stop="122550" i_length="240"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="122549" e_stop="122451" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.481" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122450" i_stop="122372" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="122371" e_stop="122189" e_length="183"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.750">
            <gDNA_intron_boundary i_start="122188" i_stop="118779" i_length="3410"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="118778" e_stop="118638" e_length="141"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118637" i_stop="118509" i_length="129"/>
          </intron>
          <exon e_serial="11" e_score="0.978">
            <gDNA_exon_boundary e_start="118508" e_stop="118464" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126782" stop="126412"/>
              <exon start="124661" stop="124580"/>
              <exon start="124471" stop="124368"/>
              <exon start="124100" stop="123976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124013" stop="123974"/>
              <exon start="123894" stop="123800"/>
              <exon start="123635" stop="123512"/>
              <exon start="122870" stop="122790"/>
              <exon start="122549" stop="122451"/>
              <exon start="122371" stop="122189"/>
              <exon start="118778" stop="118657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123992" stop="123974"/>
              <exon start="123894" stop="123800"/>
              <exon start="123635" stop="123512"/>
              <exon start="122870" stop="122790"/>
              <exon start="122549" stop="122451"/>
              <exon start="122371" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123527" stop="123512"/>
              <exon start="122870" stop="122790"/>
              <exon start="122549" stop="122451"/>
              <exon start="122371" stop="122189"/>
              <exon start="118778" stop="118638"/>
              <exon start="118508" stop="118464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTTGTTAATGGATCCCATGAACTTATCACAATCAACATTGTAAACTCCTTCTTGTCTCTGCTAATCCAGAAATCCCCATTTGAAAACCTCCAAAATCTGCAAATTCAGTTCCAATTCAAGCTTTTCAAGAACTAATACAGCTTCATTTGAGCGATGTGAAAGAGAAAAGCTTGTGAATTTGAGTTATATTCCTTGTGGGTTTTTTGCTTTGGGTAAGAAGGACAAAGTAAAACTTGAAGTGGGTCGACTTTGAAATGGTACGAAATCGAGTTTTATAATCAGAGATTGCAGTGTTTTTGGGAGTCAAGAAAAAATTGATTTTGAAGTATGATTGATCAGTTCATCAATTTTGTTATTCGTCCGCCCAG : GGCAGATTACAATCCAGACCAGTTTTTATGGGAGAAAGAGTTCAGTCTTGGGGGCAGAAAGTACAAAAGGGAAGACTTTGAG : CTTAAGAATGAAAGAGGTCATACCTTGCGATGCAGTCATTATACTCCATCATCATTTCCTGATGGTGCTCCTCTTCCTTGTGTTATATACTGCCATGGAAACAG : CGGCTGTAGGGCTGATGCGAATGAGGCAGCTGTAATACTTCTTTCATCAAATATCACTGTGGTAACCCTTGACTTCTCGGGTTCAGGCTTGTCAGATGGCAACTATGTTAGTCTTGGTTGGCATGAG : AAAGATGACCTCAAGGTAGTTGTGTCACATCTGAGAAGCAACCTGAAAGTTTCACGCATAGGTCTATGGGGACGGTCTATGGGTGCAGTTACAAG : CCTTCTATATGGAGCGGAAGATCCTTCTATTGCTGGAATGGTCTTGGACAGTGCCTTCTCTAACTTATTTGATCTAATGATGGAGCTTGTAGATGTCTACAAAATCAGGCTTCCTAAATTCACC : ATAAAGGTTGCTGTGCAGTATATGCGACATGTCATTCAGAAGAAGGCAAAGTTTGATATCATGAGACTTAATTGCTTACAG : GTTTCTCCCAAAACATATATTCCTGCTCTCTTTGGACATGCTAAAGATGATAAGTTTGTTCAGCCCCATCACTCTGATCTCATTTATAAATCATATGCG : GGTGATAAAAACATTATCAAGTTTGATGGTGACCACAATTCCTCCCGACCACAATTCTATTATGATTCAGTGTCTATTTTCTTCTACAATGTCCTCCACCCTCCTGGGATTTCACCAACTAAAAGTAAAATAGAGAAATATTACGATTTAGGGGACATCAAGGTTGGTGCTGGAATGGATGAG : AATCTCTTGTATGAGATAATTGCAACTCTTCGGAATGTTACTGCTGATACAGCAAGCTCTTCATCTGTGCCACCTAGCATTTCAACAGCTAAGTCTGCTGGCGAACTCCTTGCCGACATTGCCCCAATTGCTAGTTTGAAT : GATCCATTTATTAATGGAGGAGAAGAACTTAATGGTCATGCTACT</gDNA_template>
            <first_frame> V  L  V  N  G  S  H  E  L  I  T  I  N  I  V  N  S  F  L  S  L  L  I  Q  K  S  P  F  E  N  L  Q  N  L  Q  I  Q  F  Q  F  K  L  F  K  N  *  Y  S  F  I  *  A  M  *  K  R  K  A  C  E  F  E  L  Y  S  L  W  V  F  C  F  G  *  E  G  Q  S  K  T  *  S  G  S  T  L  K  W  Y  E  I  E  F  Y  N  Q  R  L  Q  C  F  W  E  S  R  K  N  *  F  *  S  M  I  D  Q  F  I  N  F  V  I  R  P  P  R :   A  D  Y  N  P  D  Q  F  L  W  E  K  E  F  S  L  G  G  R  K  Y  K  R  E  D  F  E  :  L  K  N  E  R  G  H  T  L  R  C  S  H  Y  T  P  S  S  F  P  D  G  A  P  L  P  C  V  I  Y  C  H  G  N  S :   G  C  R  A  D  A  N  E  A  A  V  I  L  L  S  S  N  I  T  V  V  T  L  D  F  S  G  S  G  L  S  D  G  N  Y  V  S  L  G  W  H  E  :  K  D  D  L  K  V  V  V  S  H  L  R  S  N  L  K  V  S  R  I  G  L  W  G  R  S  M  G  A  V  T  S :   L  L  Y  G  A  E  D  P  S  I  A  G  M  V  L  D  S  A  F  S  N  L  F  D  L  M  M  E  L  V  D  V  Y  K  I  R  L  P  K  F  T  :  I  K  V  A  V  Q  Y  M  R  H  V  I  Q  K  K  A  K  F  D  I  M  R  L  N  C  L  Q  :  V  S  P  K  T  Y  I  P  A  L  F  G  H  A  K  D  D  K  F  V  Q  P  H  H  S  D  L  I  Y  K  S  Y  A  :  G  D  K  N  I  I  K  F  D  G  D  H  N  S  S  R  P  Q  F  Y  Y  D  S  V  S  I  F  F  Y  N  V  L  H  P  P  G  I  S  P  T  K  S  K  I  E  K  Y  Y  D  L  G  D  I  K  V  G  A  G  M  D  E  :  N  L  L  Y  E  I  I  A  T  L  R  N  V  T  A  D  T  A  S  S  S  S  V  P  P  S  I  S  T  A  K  S  A  G  E  L  L  A  D  I  A  P  I  A  S  L  N  :  D  P  F  I  N  G  G  E  E  L  N  G  H  A  T </first_frame>
            <second_frame>  F  L  L  M  D  P  M  N  L  S  Q  S  T  L  *  T  P  S  C  L  C  *  S  R  N  P  H  L  K  T  S  K  I  C  K  F  S  S  N  S  S  F  S  R  T  N  T  A  S  F  E  R  C  E  R  E  K  L  V  N  L  S  Y  I  P  C  G  F  F  A  L  G  K  K  D  K  V  K  L  E  V  G  R  L  *  N  G  T  K  S  S  F  I  I  R  D  C  S  V  F  G  S  Q  E  K  I  D  F  E  V  *  L  I  S  S  S  I  L  L  F  V  R  P   : G  Q  I  T  I  Q  T  S  F  Y  G  R  K  S  S  V  L  G  A  E  S  T  K  G  K  T  L  S :   L  R  M  K  E  V  I  P  C  D  A  V  I  I  L  H  H  H  F  L  M  V  L  L  F  L  V  L  Y  T  A  M  E  T   : A  A  V  G  L  M  R  M  R  Q  L  *  Y  F  F  H  Q  I  S  L  W  *  P  L  T  S  R  V  Q  A  C  Q  M  A  T  M  L  V  L  V  G  M  R :   K  M  T  S  R  *  L  C  H  I  *  E  A  T  *  K  F  H  A  *  V  Y  G  D  G  L  W  V  Q  L  Q   : A  F  Y  M  E  R  K  I  L  L  L  L  E  W  S  W  T  V  P  S  L  T  Y  L  I  *  *  W  S  L  *  M  S  T  K  S  G  F  L  N  S  P :   *  R  L  L  C  S  I  C  D  M  S  F  R  R  R  Q  S  L  I  S  *  D  L  I  A  Y  R :   F  L  P  K  H  I  F  L  L  S  L  D  M  L  K  M  I  S  L  F  S  P  I  T  L  I  S  F  I  N  H  M  R :   V  I  K  T  L  S  S  L  M  V  T  T  I  P  P  D  H  N  S  I  M  I  Q  C  L  F  S  S  T  M  S  S  T  L  L  G  F  H  Q  L  K  V  K  *  R  N  I  T  I  *  G  T  S  R  L  V  L  E  W  M  R :   I  S  C  M  R  *  L  Q  L  F  G  M  L  L  L  I  Q  Q  A  L  H  L  C  H  L  A  F  Q  Q  L  S  L  L  A  N  S  L  P  T  L  P  Q  L  L  V  *  M :   I  H  L  L  M  E  E  K  N  L  M  V  M  L   </second_frame>
            <third_frame>   S  C  *  W  I  P  *  T  Y  H  N  Q  H  C  K  L  L  L  V  S  A  N  P  E  I  P  I  *  K  P  P  K  S  A  N  S  V  P  I  Q  A  F  Q  E  L  I  Q  L  H  L  S  D  V  K  E  K  S  L  *  I  *  V  I  F  L  V  G  F  L  L  W  V  R  R  T  K  *  N  L  K  W  V  D  F  E  M  V  R  N  R  V  L  *  S  E  I  A  V  F  L  G  V  K  K  K  L  I  L  K  Y  D  *  S  V  H  Q  F  C  Y  S  S  A  Q  :  G  R  L  Q  S  R  P  V  F  M  G  E  R  V  Q  S  W  G  Q  K  V  Q  K  G  R  L  *   : A  *  E  *  K  R  S  Y  L  A  M  Q  S  L  Y  S  I  I  I  S  *  W  C  S  S  S  L  C  Y  I  L  P  W  K  Q  :  R  L  *  G  *  C  E  *  G  S  C  N  T  S  F  I  K  Y  H  C  G  N  P  *  L  L  G  F  R  L  V  R  W  Q  L  C  *  S  W  L  A  *   : E  R  *  P  Q  G  S  C  V  T  S  E  K  Q  P  E  S  F  T  H  R  S  M  G  T  V  Y  G  C  S  Y  K  :  P  S  I  W  S  G  R  S  F  Y  C  W  N  G  L  G  Q  C  L  L  *  L  I  *  S  N  D  G  A  C  R  C  L  Q  N  Q  A  S  *  I  H   : H  K  G  C  C  A  V  Y  A  T  C  H  S  E  E  G  K  V  *  Y  H  E  T  *  L  L  T   : G  F  S  Q  N  I  Y  S  C  S  L  W  T  C  *  R  *  *  V  C  S  A  P  S  L  *  S  H  L  *  I  I  C   : G  *  *  K  H  Y  Q  V  *  W  *  P  Q  F  L  P  T  T  I  L  L  *  F  S  V  Y  F  L  L  Q  C  P  P  P  S  W  D  F  T  N  *  K  *  N  R  E  I  L  R  F  R  G  H  Q  G  W  C  W  N  G  *   : E  S  L  V  *  D  N  C  N  S  S  E  C  Y  C  *  Y  S  K  L  F  I  C  A  T  *  H  F  N  S  *  V  C  W  R  T  P  C  R  H  C  P  N  C  *  F  E   : *  S  I  Y  *  W  R  R  R  T  *  W  S  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126455" stop="126412"/>
                    <exon start="124661" stop="124580"/>
                    <exon start="124471" stop="124368"/>
                    <exon start="124100" stop="123974"/>
                    <exon start="123894" stop="123800"/>
                    <exon start="123635" stop="123512"/>
                    <exon start="122870" stop="122790"/>
                    <exon start="122549" stop="122451"/>
                    <exon start="122371" stop="122189"/>
                    <exon start="118778" stop="118638"/>
                    <exon start="118508" stop="118464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMIDQFINFVIRPPRADYNPDQFLWEKEFSLGGRKYKREDFELKNERGHTLRCSHYTPSSFPDGAPLPCVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSGLSDGNYVSLGWHEKDDLKVVVSHLRSNLKVSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLMMELVDVYKIRLPKFTIKVAVQYMRHVIQKKAKFDIMRLNCLQVSPKTYIPALFGHAKDDKFVQPHHSDLIYKSYAGDKNIIKFDGDHNSSRPQFYYDSVSIFFYNVLHPPGISPTKSKIEKYYDLGDIKVGAGMDENLLYEIIATLRNVTADTASSSSVPPSISTAKSAGELLADIAPIASLNDPFINGGEELNGHAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="126773" e_stop="126412"/>
            <exon e_start="124661" e_stop="124576"/>
            <exon e_start="124471" e_stop="124372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.998" e_score="0.948"/>
          <exon-intron don_prob="0.730" acc_prob="0.998" e_score="0.988"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="126773" e_stop="126412" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126411" i_stop="124662" i_length="1750"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="124661" e_stop="124576" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.730" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124575" i_stop="124472" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="124471" e_stop="124372" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126773" stop="126412"/>
              <exon start="124661" stop="124576"/>
              <exon start="124471" stop="124372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGATCCCATGAACTTATCACAATCAACATTGTAAACTCCTTCTTGTCTCTGCTAATCCAGAAATCCCCATTTGAAAACCTCCAAAATCTGCAAATTCAGTTCCAATTCAAGCTTTTCAAGAACTAATACAGCTTCATTTGAGCGATGTGAAAGAGAAAAGCTTGTGAATTTGAGTTATATTCCTTGTGGGTTTTTTGCTTTGGGTAAGAAGGACAAAGTAAAACTTGAAGTGGGTCGACTTTGAAATGGTACGAAATCGAGTTTTATAATCAGAGATTGCAGTGTTTTTGGGAGTCAAGAAAAAATTGATTTTGAAGTATGATTGATCAGTTCATCAATTTTGTTATTCGTCCGCCCAG : GGCAGATTACAATCCAGACCAGTTTTTATGGGAGAAAGAGTTCAGTCTTGGGGGCAGAAAGTACAAAAGGGAAGACTTTGAGGCAA : CTTAAGAATGAAAGAGGTCATACCTTGCGATGCAGTCATTATACTCCATCATCATTTCCTGATGGTGCTCCTCTTCCTTGTGTTATATACTGCCATGGAA</gDNA_template>
            <first_frame> N  G  S  H  E  L  I  T  I  N  I  V  N  S  F  L  S  L  L  I  Q  K  S  P  F  E  N  L  Q  N  L  Q  I  Q  F  Q  F  K  L  F  K  N  *  Y  S  F  I  *  A  M  *  K  R  K  A  C  E  F  E  L  Y  S  L  W  V  F  C  F  G  *  E  G  Q  S  K  T  *  S  G  S  T  L  K  W  Y  E  I  E  F  Y  N  Q  R  L  Q  C  F  W  E  S  R  K  N  *  F  *  S  M  I  D  Q  F  I  N  F  V  I  R  P  P  R :   A  D  Y  N  P  D  Q  F  L  W  E  K  E  F  S  L  G  G  R  K  Y  K  R  E  D  F  E  A   : T  *  E  *  K  R  S  Y  L  A  M  Q  S  L  Y  S  I  I  I  S  *  W  C  S  S  S  L  C  Y  I  L  P  W   </first_frame>
            <second_frame>  M  D  P  M  N  L  S  Q  S  T  L  *  T  P  S  C  L  C  *  S  R  N  P  H  L  K  T  S  K  I  C  K  F  S  S  N  S  S  F  S  R  T  N  T  A  S  F  E  R  C  E  R  E  K  L  V  N  L  S  Y  I  P  C  G  F  F  A  L  G  K  K  D  K  V  K  L  E  V  G  R  L  *  N  G  T  K  S  S  F  I  I  R  D  C  S  V  F  G  S  Q  E  K  I  D  F  E  V  *  L  I  S  S  S  I  L  L  F  V  R  P   : G  Q  I  T  I  Q  T  S  F  Y  G  R  K  S  S  V  L  G  A  E  S  T  K  G  K  T  L  R  Q  :  L  K  N  E  R  G  H  T  L  R  C  S  H  Y  T  P  S  S  F  P  D  G  A  P  L  P  C  V  I  Y  C  H  G  </second_frame>
            <third_frame>   W  I  P  *  T  Y  H  N  Q  H  C  K  L  L  L  V  S  A  N  P  E  I  P  I  *  K  P  P  K  S  A  N  S  V  P  I  Q  A  F  Q  E  L  I  Q  L  H  L  S  D  V  K  E  K  S  L  *  I  *  V  I  F  L  V  G  F  L  L  W  V  R  R  T  K  *  N  L  K  W  V  D  F  E  M  V  R  N  R  V  L  *  S  E  I  A  V  F  L  G  V  K  K  K  L  I  L  K  Y  D  *  S  V  H  Q  F  C  Y  S  S  A  Q  :  G  R  L  Q  S  R  P  V  F  M  G  E  R  V  Q  S  W  G  Q  K  V  Q  K  G  R  L  *  G  N :   L  R  M  K  E  V  I  P  C  D  A  V  I  I  L  H  H  H  F  L  M  V  L  L  F  L  V  L  Y  T  A  M  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126448" stop="126412"/>
                    <exon start="124661" stop="124576"/>
                    <exon start="124471" stop="124373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LISSSILLFVRPGQITIQTSFYGRKSSVLGAESTKGKTLRQLKNERGHTLRCSHYTPSSFPDGAPLPCVIYCHG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="138129" PGL_stop="138822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138129" e_stop="138140"/>
            <exon e_start="138396" e_stop="138822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.821" acc_prob="0.000" e_score="0.583"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.583">
            <gDNA_exon_boundary e_start="138129" e_stop="138140" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.821" acc_prob="0.000">
            <gDNA_intron_boundary i_start="138141" i_stop="138395" i_length="255"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="138396" e_stop="138822" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138129" stop="138140"/>
              <exon start="138396" stop="138822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138129" stop="138140"/>
              <exon start="138396" stop="138682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229986" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATTATCTCT : ATCTTAGTTTAATAGACTTTTGGTCAAAATCAAATTTACAAAAATATTGTTCCTCTACATAGTAATTACATTACATGAGTGTAAATTTAGCAAAACAAGCTGTCCAACTGGCTTGAATTACCCAACAAGTTGTTCTACACTTGAGATAGTTGCCATTGGCATCTAGGTTTAAGCAAAAATAAACTTTTTGTACAAAATAAATACATCAGAATGACCAGCTCGATCGTAAGTGAGGCACCAAGTGATGCTTATGAAATATTAAGTTATCCCTTGAGCATGCAAGGCCTGTGCGGGGTGGTAGTAAGATACCTGAATAAGCTTCGCAACAATCAACTGAAAATTTGTAATTCGCTCTGCTTCAATCCGGCTTTTTCTGGGCTTTTAGTGTGTCAAATGGCTGATTATATGCTCCTTAAGCTGACATGAC</gDNA_template>
            <first_frame> Y  I  I  S  :  I  L  V  *  *  T  F  G  Q  N  Q  I  Y  K  N  I  V  P  L  H  S  N  Y  I  T  *  V  *  I  *  Q  N  K  L  S  N  W  L  E  L  P  N  K  L  F  Y  T  *  D  S  C  H  W  H  L  G  L  S  K  N  K  L  F  V  Q  N  K  Y  I  R  M  T  S  S  I  V  S  E  A  P  S  D  A  Y  E  I  L  S  Y  P  L  S  M  Q  G  L  C  G  V  V  V  R  Y  L  N  K  L  R  N  N  Q  L  K  I  C  N  S  L  C  F  N  P  A  F  S  G  L  L  V  C  Q  M  A  D  Y  M  L  L  K  L  T  *  </first_frame>
            <second_frame>  I  L  S  L :   S  *  F  N  R  L  L  V  K  I  K  F  T  K  I  L  F  L  Y  I  V  I  T  L  H  E  C  K  F  S  K  T  S  C  P  T  G  L  N  Y  P  T  S  C  S  T  L  E  I  V  A  I  G  I  *  V  *  A  K  I  N  F  L  Y  K  I  N  T  S  E  *  P  A  R  S  *  V  R  H  Q  V  M  L  M  K  Y  *  V  I  P  *  A  C  K  A  C  A  G  W  *  *  D  T  *  I  S  F  A  T  I  N  *  K  F  V  I  R  S  A  S  I  R  L  F  L  G  F  *  C  V  K  W  L  I  I  C  S  L  S  *  H  D </second_frame>
            <third_frame>   Y  Y  L   : Y  L  S  L  I  D  F  W  S  K  S  N  L  Q  K  Y  C  S  S  T  *  *  L  H  Y  M  S  V  N  L  A  K  Q  A  V  Q  L  A  *  I  T  Q  Q  V  V  L  H  L  R  *  L  P  L  A  S  R  F  K  Q  K  *  T  F  C  T  K  *  I  H  Q  N  D  Q  L  D  R  K  *  G  T  K  *  C  L  *  N  I  K  L  S  L  E  H  A  R  P  V  R  G  G  S  K  I  P  E  *  A  S  Q  Q  S  T  E  N  L  *  F  A  L  L  Q  S  G  F  F  W  A  F  S  V  S  N  G  *  L  Y  A  P  *  A  D  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138540" stop="138821"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCHWHLGLSKNKLFVQNKYIRMTSSIVSEAPSDAYEILSYPLSMQGLCGVVVRYLNKLRNNQLKICNSLCFNPAFSGLLVCQMADYMLLKLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="144409" PGL_stop="138867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144409" e_stop="143873"/>
            <exon e_start="142216" e_stop="142117"/>
            <exon e_start="141992" e_stop="141813"/>
            <exon e_start="140684" e_stop="140567"/>
            <exon e_start="138890" e_stop="138867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.992" e_score="0.989"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="144409" e_stop="143873" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.992">
            <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142216" e_stop="142117" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141992" e_stop="141813" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.809" acc_prob="0.997">
            <gDNA_intron_boundary i_start="141812" i_stop="140685" i_length="1128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="140684" e_stop="140567" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.828">
            <gDNA_intron_boundary i_start="140566" i_stop="138891" i_length="1676"/>
          </intron>
          <exon e_serial="5" e_score="0.917">
            <gDNA_exon_boundary e_start="138890" e_stop="138867" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144409" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144406" stop="143937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144303" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144295" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144223" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141813"/>
              <exon start="140684" stop="140567"/>
              <exon start="138890" stop="138867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144204" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144203" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141813"/>
              <exon start="140684" stop="140593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144200" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144184" stop="143897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144183" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACAAACGCCACAAAAAGAGTAAAATTTATTTTTAGGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG : ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG : TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCAT : GTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTGAAGCCACTGGGAAGTCGTGGGAAGAG : GCATTTTCTCTGGCTGGACCTGGA</gDNA_template>
            <first_frame> N  T  N  A  T  K  R  V  K  F  I  F  R  R  K  M  E  S  M  L  R  I  Q  Y  E  D  R  F  F  Q  G  L  V  F  D  Y  R  G  S  K  Q  P  L  V  F  *  A  T  R  N  F  *  L  E  V  Q  I  N  S  M  H  Y  C  S  A  Q  R  R  R  N  L  *  L  L  A  T  I  L  N  A  E  *  L  K  L  P  R  K  *  M  L  *  *  H  L  L  W  N  H  Y  K  Y  H  T  T  T  T  P  V  K  N  P  K  S  R  K  A  Q  N  V  L  W  L  L  H  L  V  V  V  L  V  L  L  *  L  K  P  I  K  I  S  S  R  F  L  L  L  H  K  P  Q  Q  Q  P  Y  R  Q  L  L  L  V  D  S  Y  C  L  D  M  R  R  V  L  G  R  I  A  L  F  G  :  I  M  I  V  L  *  V  D  L  D  N  L  M  L  S  R  S  R  K  T  F  *  N  W  V  G  F  H  N  L  F  Y  Q   : V  M  H  C  E  R  G  K  H  *  K  *  C  R  S  K  F  K  P  F  W  K  L  K  Y  I  L  F  Q  A  S  I  L  W  Q  Q  W  M  G  R  Q  L  S  T  Y  D  K  Q  Y  V  T  T  R  G  M  R  S  Q  Q  S   : C  V  W  D  T  I  E  D  G  R  R  Q  P  Q  C  C  Q  V  L  L  *  N  *  R  L  V  M  V  L  C  L  K  P  L  G  S  R  G  K  R :   H  F  L  W  L  D  L   </first_frame>
            <second_frame>  T  Q  T  P  Q  K  E  *  N  L  F  L  G  G  K  W  N  L  C  *  E  S  S  T  K  T  D  F  F  K  D  *  F  L  I  T  E  D  P  N  N  P  L  Y  S  K  L  Q  E  T  F  S  L  K  C  K  L  I  V  C  I  I  A  Q  L  R  G  E  E  I  C  S  C  *  P  P  F  *  M  L  S  S  *  S  Y  Q  E  N  E  C  C  S  S  I  S  C  G  T  I  T  S  T  I  Q  L  Q  L  L  *  K  I  P  N  Q  E  K  P  K  M  C  Y  G  C  F  I  *  *  W  C  W  F  S  C  N  *  N  Q  S  R  S  A  A  D  F  Y  F  Y  T  N  P  N  N  N  P  I  V  S  C  C  S  S  T  H  T  A  *  T  C  E  E  F  L  G  E  S  L  Y  S  G :   S  *  S  S  F  E  *  I  W  T  T  *  C  Y  Q  G  L  A  K  P  S  K  T  G  L  D  S  T  T  Y  F  I  K  :  *  C  T  A  N  A  G  N  T  E  N  N  A  G  A  S  S  S  L  F  G  S  *  S  T  F  Y  F  K  L  L  F  C  G  S  N  G  W  A  D  S  *  A  P  T  T  S  N  M  *  L  L  E  G  *  D  L  N  S  H  :  V  Y  G  T  Q  *  R  M  G  G  G  S  L  S  V  V  R  C  Y  C  R  T  K  D  L  *  W  C  F  A  *  S  H  W  E  V  V  G  R   : G  I  F  S  G  W  T  W  </second_frame>
            <third_frame>   H  K  R  H  K  K  S  K  I  Y  F  *  E  E  N  G  I  Y  A  K  N  P  V  R  R  Q  I  F  S  R  I  S  F  *  L  Q  R  I  Q  T  T  P  C  I  L  S  Y  K  K  L  L  A  *  S  A  N  *  *  Y  A  L  L  L  S  S  E  E  K  K  F  V  V  A  S  H  H  F  E  C  *  V  V  E  A  T  K  K  M  N  V  V  V  A  S  L  V  E  P  L  Q  V  P  Y  N  Y  N  S  C  K  K  S  Q  I  K  K  S  P  K  C  V  M  V  A  S  S  S  S  G  V  G  S  L  V  I  E  T  N  Q  D  Q  Q  Q  I  S  T  S  T  Q  T  P  T  T  T  L  S  S  V  A  A  R  R  L  I  L  L  R  H  A  K  S  S  W  E  N  R  S  I  R   : D  H  D  R  P  L  S  R  S  G  Q  L  D  A  I  K  V  S  Q  N  L  L  K  L  G  W  I  P  Q  L  I  L  S  S :   D  A  L  R  T  R  E  T  L  K  I  M  Q  E  Q  V  Q  A  F  L  E  A  E  V  H  F  I  S  S  F  Y  S  V  A  A  M  D  G  Q  T  A  E  H  L  R  Q  A  I  C  N  Y  S  R  D  E  I  S  T  V  M :   C  M  G  H  N  R  G  W  E  E  A  A  S  V  L  S  G  A  T  V  E  L  K  T  C  N  G  A  L  L  E  A  T  G  K  S  W  E  E  :  A  F  S  L  A  G  P  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144167" stop="143873"/>
                    <exon start="142216" stop="142117"/>
                    <exon start="141992" stop="141813"/>
                    <exon start="140684" stop="140567"/>
                    <exon start="138890" stop="138867"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEATKKMNVVVASLVEPLQVPYNYNSCKKSQIKKSPKCVMVASSSSGVGSLVIETNQDQQQISTSTQTPTTTLSSVAARRLILLRHAKSSWENRSIRDHDRPLSRSGQLDAIKVSQNLLKLGWIPQLILSSDALRTRETLKIMQEQVQAFLEAEVHFISSFYSVAAMDGQTAEHLRQAICNYSRDEISTVMCMGHNRGWEEAASVLSGATVELKTCNGALLEATGKSWEEAFSLAGPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="150097" PGL_stop="144612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150097" e_stop="149245"/>
            <exon e_start="149156" e_stop="149061"/>
            <exon e_start="148530" e_stop="148438"/>
            <exon e_start="148320" e_stop="148235"/>
            <exon e_start="148151" e_stop="147891"/>
            <exon e_start="146639" e_stop="146512"/>
            <exon e_start="146427" e_stop="146332"/>
            <exon e_start="145379" e_stop="145274"/>
            <exon e_start="145156" e_stop="144612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.992" e_score="0.990"/>
          <exon-intron don_prob="0.974" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.975" e_score="0.996"/>
          <exon-intron don_prob="0.978" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="150097" e_stop="149245" e_length="853"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.992">
            <gDNA_intron_boundary i_start="149244" i_stop="149157" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="149156" e_stop="149061" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.861">
            <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="148530" e_stop="148438" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="148437" i_stop="148321" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="148320" e_stop="148235" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.610" acc_prob="0.977">
            <gDNA_intron_boundary i_start="148234" i_stop="148152" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="148151" e_stop="147891" e_length="261"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.975">
            <gDNA_intron_boundary i_start="147890" i_stop="146640" i_length="1251"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="146639" e_stop="146512" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.993">
            <gDNA_intron_boundary i_start="146511" i_stop="146428" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="146427" e_stop="146332" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.873">
            <gDNA_intron_boundary i_start="146331" i_stop="145380" i_length="952"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="145379" e_stop="145274" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.951" acc_prob="0.992">
            <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="145156" e_stop="144612" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150097" stop="149287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150096" stop="149564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149928" stop="149507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149756" stop="149276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149517" stop="149245"/>
              <exon start="149156" stop="149061"/>
              <exon start="148530" stop="148438"/>
              <exon start="148320" stop="148235"/>
              <exon start="148151" stop="147899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149515" stop="149245"/>
              <exon start="149156" stop="149061"/>
              <exon start="148530" stop="148438"/>
              <exon start="148320" stop="148235"/>
              <exon start="148151" stop="147891"/>
              <exon start="146639" stop="146610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149458" stop="149245"/>
              <exon start="149156" stop="149061"/>
              <exon start="148530" stop="148438"/>
              <exon start="148320" stop="148235"/>
              <exon start="148151" stop="148123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149354" stop="149245"/>
              <exon start="149156" stop="149061"/>
              <exon start="148530" stop="148438"/>
              <exon start="148320" stop="148235"/>
              <exon start="148151" stop="148021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148314" stop="148235"/>
              <exon start="148151" stop="147891"/>
              <exon start="146639" stop="146512"/>
              <exon start="146427" stop="146332"/>
              <exon start="145379" stop="145283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147933" stop="147891"/>
              <exon start="146639" stop="146512"/>
              <exon start="146427" stop="146332"/>
              <exon start="145379" stop="145274"/>
              <exon start="145156" stop="144666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146639" stop="146512"/>
              <exon start="146427" stop="146332"/>
              <exon start="145379" stop="145274"/>
              <exon start="145156" stop="144733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146405" stop="146332"/>
              <exon start="145379" stop="145274"/>
              <exon start="145156" stop="144740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145329" stop="145274"/>
              <exon start="145156" stop="144726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145328" stop="145274"/>
              <exon start="145156" stop="144612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145328" stop="145274"/>
              <exon start="145156" stop="144667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145328" stop="145274"/>
              <exon start="145156" stop="144737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145142" stop="144733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAAAAGAACATGAATTGAATTTCAATGTGAACATTGAACGATAAACAAGAAATCAAAAATGACAAAAGACAGATATTTTTAGTAGTTAGATGTATAAAAAATACTCTTATCTTGTATTGGAAGAAGGCGGGCGATTAATTTGGGTTGATAAAAATGTCAACTTTCACTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATATTATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT : TGGCGAATTTGCTTTTTCTTGAATCACCAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG : CTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCATAGAGAATTTTACATTGCTGGAGAAAGTTATGCAG : GGCATTATGTTCCGCAGCTATCTCAACTTGTCTACCAGAGGAACAAGGGAATCAAGAACCCAATTATAAATTTCAAGGGCTTTATG : GTTGGAAATGCTGTTACCGATGATTACCATGACTATGTTGGCACGTTCGAGTACTGGTGGACTCATGGCTTGATTTCGGATTCTACATACAAGCTTCTCCAGATAACATGTGACACAGGATCGTCTGAACATCCTTCCACTGATTGTACCAAAGCTCTTCTTCTTGCAGATCATGAGCAGGGAAATATTGACCCATATAGCATATATACTCGTCCTTGTGCCAGTACTAATGCACTTCACCGCAACCTAAGGGGTCATTAT : CCATGGATGTCCAGAGCATATGATCCTTGTACCGAGAGGTACTCTGATGTTTATTTTAATCTCCCAGAGGTACAAAAGGCATTCCATGCTAATGTAACTAAGATTGCCTATCCTTGGAAAACATGCAG : TGATATAGTCGGAGACTACTGGGACGATTCTCCTTTATCAATGCTTCCCATCTACCATGAGCTAATAGCGGCTGGTCTCAGGATATGGGTATTCAG : TGGCGATACTGATTCAGTTGTTCCTTTAACCGCAACTCGATATTCTATAGATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG : GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGACTCCTTGCAACTTTAGCTTTTTCCAAATATTACACTTTCCAAATACAATTCTTGATGAGTATTAGACTTAAGTCCTATAGAAATATGCATGGTATCGTCTTTGTGTTCTATTTTT</gDNA_template>
            <first_frame> I  K  K  N  M  N  *  I  S  M  *  T  L  N  D  K  Q  E  I  K  N  D  K  R  Q  I  F  L  V  V  R  C  I  K  N  T  L  I  L  Y  W  K  K  A  G  D  *  F  G  L  I  K  M  S  T  F  T  N  *  *  K  S  W  I  K  S  L  T  Y  Y  Y  Y  I  L  Y  N  F  R  I  Y  L  E  I  C  A  F  G  Y  S  L  V  Y  I  I  W  V  I  L  I  L  P  P  *  Y  L  S  P  C  F  L  K  I  P  Q  K  V  G  I  F  V  V  F  V  F  F  H  C  I  V  L  P  H  V  I  N  V  Q  Y  L  G  L  T  V  H  N  S  *  K  K  S  N  L  C  V  *  F  V  F  S  V  Y  R  F  M  E  N  S  L  C  Y  V  M  F  L  S  F  L  F  V  G  S  C  Y  S  F  Y  N  V  E  Q  E  N  D  R  I  T  Y  L  P  G  Q  P  E  N  V  Q  F  S  Q  Y  S  G  Y  V  T  V  N  Q  Q  A  G  R  A  L  F  Y  W  L  I  E  S  P  S  T  R  N  P  E  K  R  P  L  V  L  W  L  N  G  G  P  G  C  S  S  V  A  Y  G  A  A  E  E  I  G  P  F  H  I  N  A  D  G  K  T  L  Y  L  N  P  Y  S  W  N  N   : L  A  N  L  L  F  L  E  S  P  A  G  V  G  F  S  Y  T  N  T  T  S  D  L  Y  D  A  G  D  Q  R  T   : A  E  D  T  Y  Q  F  V  I  K  W  F  E  R  F  P  Q  Y  K  H  R  E  F  Y  I  A  G  E  S  Y  A   : G  H  Y  V  P  Q  L  S  Q  L  V  Y  Q  R  N  K  G  I  K  N  P  I  I  N  F  K  G  F  M  :  V  G  N  A  V  T  D  D  Y  H  D  Y  V  G  T  F  E  Y  W  W  T  H  G  L  I  S  D  S  T  Y  K  L  L  Q  I  T  C  D  T  G  S  S  E  H  P  S  T  D  C  T  K  A  L  L  L  A  D  H  E  Q  G  N  I  D  P  Y  S  I  Y  T  R  P  C  A  S  T  N  A  L  H  R  N  L  R  G  H  Y  :  P  W  M  S  R  A  Y  D  P  C  T  E  R  Y  S  D  V  Y  F  N  L  P  E  V  Q  K  A  F  H  A  N  V  T  K  I  A  Y  P  W  K  T  C  S :   D  I  V  G  D  Y  W  D  D  S  P  L  S  M  L  P  I  Y  H  E  L  I  A  A  G  L  R  I  W  V  F  S :   G  D  T  D  S  V  V  P  L  T  A  T  R  Y  S  I  D  A  L  K  L  P  T  I  T  N  W  Y  P  W  Y  D  N  K  K  :  V  G  G  W  S  Q  I  Y  K  G  L  T  L  V  T  I  T  G  A  G  H  E  V  P  L  H  R  P  R  Q  A  F  I  L  F  R  S  F  L  E  N  K  P  M  P  S  *  T  K  S  I  C  R  E  S  S  I  D  H  V  V  K  G  P  E  I  T  I  *  S  L  I  S  F  P  S  T  G  I  S  V  K  A  A  G  E  I  Q  D  Y  Y  L  H  L  N  N  A  I  Q  W  L  H  *  N  F  H  S  Y  I  S  L  T  S  F  V  D  K  S  I  P  C  K  W  S  F  Q  L  K  T  F  L  L  *  E  N  P  T  C  L  E  T  N  L  T  P  C  N  F  S  F  F  Q  I  L  H  F  P  N  T  I  L  D  E  Y  *  T  *  V  L  *  K  Y  A  W  Y  R  L  C  V  L  F   </first_frame>
            <second_frame>  L  K  R  T  *  I  E  F  Q  C  E  H  *  T  I  N  K  K  S  K  M  T  K  D  R  Y  F  *  *  L  D  V  *  K  I  L  L  S  C  I  G  R  R  R  A  I  N  L  G  *  *  K  C  Q  L  S  L  I  S  R  N  L  G  S  N  L  L  L  I  I  T  I  Y  Y  I  I  S  E  F  I  *  R  S  V  H  L  G  I  L  *  F  I  L  S  G  S  F  S  F  C  P  H  S  T  C  L  L  V  S  *  K  S  H  K  K  L  G  F  L  L  F  L  C  F  F  T  V  L  F  C  P  M  *  *  M  F  N  I  L  D  *  L  Y  I  I  L  E  K  N  P  I  F  V  F  D  L  F  S  V  C  T  D  S  W  R  I  L  C  V  M  *  C  S  C  H  F  C  L  W  V  V  V  I  L  S  I  M  *  N  K  K  M  I  E  L  L  I  C  L  G  N  Q  K  M  Y  N  L  V  S  I  Q  V  M  *  L  *  I  S  K  L  E  G  H  C  F  T  G  *  L  N  H  H  R  L  V  I  L  R  K  G  H  L  F  C  G  L  M  E  G  Q  D  V  L  L  *  L  M  E  L  L  K  K  S  A  R  F  I  L  M  L  M  G  R  H  F  T  *  I  L  T  H  G  T  T  :  W  R  I  C  F  F  L  N  H  Q  L  E  L  V  F  L  I  Q  I  L  P  Q  I  C  M  M  L  V  I  K  E  Q  :  L  K  I  P  T  S  L  L  S  S  G  L  K  G  F  L  S  T  S  I  E  N  F  T  L  L  E  K  V  M  Q  :  G  I  M  F  R  S  Y  L  N  L  S  T  R  G  T  R  E  S  R  T  Q  L  *  I  S  R  A  L  W :   L  E  M  L  L  P  M  I  T  M  T  M  L  A  R  S  S  T  G  G  L  M  A  *  F  R  I  L  H  T  S  F  S  R  *  H  V  T  Q  D  R  L  N  I  L  P  L  I  V  P  K  L  F  F  L  Q  I  M  S  R  E  I  L  T  H  I  A  Y  I  L  V  L  V  P  V  L  M  H  F  T  A  T  *  G  V  I  I :   H  G  C  P  E  H  M  I  L  V  P  R  G  T  L  M  F  I  L  I  S  Q  R  Y  K  R  H  S  M  L  M  *  L  R  L  P  I  L  G  K  H  A   : V  I  *  S  E  T  T  G  T  I  L  L  Y  Q  C  F  P  S  T  M  S  *  *  R  L  V  S  G  Y  G  Y  S   : V  A  I  L  I  Q  L  F  L  *  P  Q  L  D  I  L  *  M  H  *  S  S  Q  L  S  Q  T  G  T  L  G  M  T  I  K  R :   L  E  D  G  A  K  Y  T  K  G  *  P  L  *  L  *  Q  E  Q  G  M  K  F  L  F  I  A  L  V  K  L  S  F  Y  S  D  H  F  W  R  T  S  P  C  Q  A  K  Q  S  Q  S  V  E  N  L  R  L  I  M  L  S  K  D  Q  R  *  R  Y  N  P  S  F  L  S  P  R  L  V  Y  Q  *  R  P  R  G  R  F  K  I  I  T  Y  T  S  I  M  L  Y  N  G  Y  I  R  I  S  I  H  I  L  V  *  L  H  L  *  I  K  A  F  H  V  N  G  V  S  S  *  R  H  S  Y  Y  R  K  I  L  L  V  W  R  Q  I  *  L  L  A  T  L  A  F  S  K  Y  Y  T  F  Q  I  Q  F  L  M  S  I  R  L  K  S  Y  R  N  M  H  G  I  V  F  V  F  Y  F  </second_frame>
            <third_frame>   *  K  E  H  E  L  N  F  N  V  N  I  E  R  *  T  R  N  Q  K  *  Q  K  T  D  I  F  S  S  *  M  Y  K  K  Y  S  Y  L  V  L  E  E  G  G  R  L  I  W  V  D  K  N  V  N  F  H  *  L  V  E  I  L  D  Q  I  S  Y  L  L  L  L  Y  T  I  *  F  Q  N  L  F  R  D  L  C  I  W  V  F  F  S  L  Y  Y  L  G  H  S  H  F  A  P  I  V  L  V  S  L  F  L  E  N  P  T  K  S  W  D  F  C  C  F  C  V  F  S  L  Y  C  F  A  P  C  D  K  C  S  I  S  W  T  N  C  T  *  F  L  K  K  I  Q  S  L  C  L  I  C  F  Q  C  V  Q  I  H  G  E  F  S  V  L  C  D  V  L  V  I  F  V  C  G  *  L  L  F  F  L  *  C  R  T  R  K  *  *  N  Y  L  F  A  W  A  T  R  K  C  T  I  *  S  V  F  R  L  C  N  C  K  S  A  S  W  K  G  I  V  L  L  V  D  *  I  T  I  D  S  *  S  *  E  K  A  T  C  F  V  A  *  W  R  A  R  M  F  F  C  S  L  W  S  C  *  R  N  R  P  V  S  Y  *  C  *  W  E  D  T  L  L  E  S  L  L  M  E  Q  L :   G  E  F  A  F  S  *  I  T  S  W  S  W  F  F  L  Y  K  Y  Y  L  R  F  V  *  C  W  *  S  K  N  S :   *  R  Y  L  P  V  C  Y  Q  V  V  *  K  V  S  S  V  Q  A  *  R  I  L  H  C  W  R  K  L  C  R :   A  L  C  S  A  A  I  S  T  C  L  P  E  E  Q  G  N  Q  E  P  N  Y  K  F  Q  G  L  Y   : G  W  K  C  C  Y  R  *  L  P  *  L  C  W  H  V  R  V  L  V  D  S  W  L  D  F  G  F  Y  I  Q  A  S  P  D  N  M  *  H  R  I  V  *  T  S  F  H  *  L  Y  Q  S  S  S  S  C  R  S  *  A  G  K  Y  *  P  I  *  H  I  Y  S  S  L  C  Q  Y  *  C  T  S  P  Q  P  K  G  S  L   : S  M  D  V  Q  S  I  *  S  L  Y  R  E  V  L  *  C  L  F  *  S  P  R  G  T  K  G  I  P  C  *  C  N  *  D  C  L  S  L  E  N  M  Q  :  *  Y  S  R  R  L  L  G  R  F  S  F  I  N  A  S  H  L  P  *  A  N  S  G  W  S  Q  D  M  G  I  Q  :  W  R  Y  *  F  S  C  S  F  N  R  N  S  I  F  Y  R  C  I  E  A  P  N  Y  H  K  L  V  P  L  V  *  Q  *  K   : G  W  R  M  E  P  N  I  Q  R  V  N  P  C  N  Y  N  R  S  R  A  *  S  S  S  S  S  P  S  S  S  F  H  S  I  Q  I  I  F  G  E  Q  A  H  A  K  L  N  K  V  N  L  *  R  I  F  D  *  S  C  C  Q  R  T  R  D  N  D  I  I  P  H  F  F  P  L  D  W  Y  I  S  K  G  R  G  G  D  S  R  L  L  L  T  P  Q  *  C  Y  T  M  A  T  L  E  F  P  F  I  Y  *  F  D  F  I  C  R  *  K  H  S  M  *  M  E  F  P  V  E  D  I  L  I  I  G  K  S  Y  L  F  G  D  K  F  D  S  L  Q  L  *  L  F  P  N  I  T  L  S  K  Y  N  S  *  *  V  L  D  L  S  P  I  E  I  C  M  V  S  S  L  C  S  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149632" stop="149245"/>
                    <exon start="149156" stop="149061"/>
                    <exon start="148530" stop="148438"/>
                    <exon start="148320" stop="148235"/>
                    <exon start="148151" stop="147891"/>
                    <exon start="146639" stop="146512"/>
                    <exon start="146427" stop="146332"/>
                    <exon start="145379" stop="145274"/>
                    <exon start="145156" stop="145016"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFSVYRFMENSLCYVMFLSFLFVGSCYSFYNVEQENDRITYLPGQPENVQFSQYSGYVTVNQQAGRALFYWLIESPSTRNPEKRPLVLWLNGGPGCSSVAYGAAEEIGPFHINADGKTLYLNPYSWNNLANLLFLESPAGVGFSYTNTTSDLYDAGDQRTAEDTYQFVIKWFERFPQYKHREFYIAGESYAGHYVPQLSQLVYQRNKGIKNPIINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYKLLQITCDTGSSEHPSTDCTKALLLADHEQGNIDPYSIYTRPCASTNALHRNLRGHYPWMSRAYDPCTERYSDVYFNLPEVQKAFHANVTKIAYPWKTCSDIVGDYWDDSPLSMLPIYHELIAAGLRIWVFSGDTDSVVPLTATRYSIDALKLPTITNWYPWYDNKKVGGWSQIYKGLTLVTITGAGHEVPLHRPRQAFILFRSFLENKPMPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149870" stop="149664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQNLFRDLCIWVFFSLYYLGHSHFAPIVLVSLFLENPTKSWDFCCFCVFSLYCFAPCDKCSISWTNCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="150097" e_stop="149245"/>
            <exon e_start="149129" e_stop="149061"/>
            <exon e_start="148530" e_stop="148472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.974" acc_prob="0.861" e_score="0.899"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="150097" e_stop="149245" e_length="853"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.000">
            <gDNA_intron_boundary i_start="149244" i_stop="149130" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="149129" e_stop="149061" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.861">
            <gDNA_intron_boundary i_start="149060" i_stop="148531" i_length="530"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="148530" e_stop="148472" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150097" stop="149287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150096" stop="149564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149928" stop="149507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149756" stop="149276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149713" stop="149245"/>
              <exon start="149129" stop="149061"/>
              <exon start="148530" stop="148472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAAAAGAACATGAATTGAATTTCAATGTGAACATTGAACGATAAACAAGAAATCAAAAATGACAAAAGACAGATATTTTTAGTAGTTAGATGTATAAAAAATACTCTTATCTTGTATTGGAAGAAGGCGGGCGATTAATTTGGGTTGATAAAAATGTCAACTTTCACTAATTAGTAGAAATCTTGGATCAAATCTCTTACTTATTATTACTATATACTATATAATTTCAGAATTTATTTAGAGATCTGTGCATTTGGGTATTCTTTAGTTTATATTATCTGGGTCATTCTCATTTTGCCCCCATAGTACTTGTCTCCTTGTTTCTTGAAAATCCCACAAAAAGTTGGGATTTTTGTTGTTTTTGTGTTTTTTCACTGTATTGTTTTGCCCCATGTGATAAATGTTCAATATCTTGGACTAACTGTACATAATTCTTGAAAAAAATCCAATCTTTGTGTTTGATTTGTTTTCAGTGTGTACAGATTCATGGAGAATTCTCTGTGTTATGTGATGTTCTTGTCATTTTTGTTTGTGGGTAGTTGTTATTCTTTCTATAATGTAGAACAAGAAAATGATAGAATTACTTATTTGCCTGGGCAACCAGAAAATGTACAATTTAGTCAGTATTCAGGTTATGTAACTGTAAATCAGCAAGCTGGAAGGGCATTGTTTTACTGGTTGATTGAATCACCATCGACTCGTAATCCTGAGAAAAGGCCACTTGTTTTGTGGCTTAATGGAGGGCCAGGATGTTCTTCTGTAGCTTATGGAGCTGCTGAAGAAATCGGCCCGTTTCATATTAATGCTGATGGGAAGACACTTTACTTGAATCCTTACTCATGGAACAACT : CAGCTGGAGTTGGTTTTTCTTATACAAATACTACCTCAGATTTGTATGATGCTGGTGATCAAAGAACAG : CTGAAGATACCTACCAGTTTGTTATCAAGTGGTTTGAAAGGTTTCCTCAGTACAAGCAT</gDNA_template>
            <first_frame> I  K  K  N  M  N  *  I  S  M  *  T  L  N  D  K  Q  E  I  K  N  D  K  R  Q  I  F  L  V  V  R  C  I  K  N  T  L  I  L  Y  W  K  K  A  G  D  *  F  G  L  I  K  M  S  T  F  T  N  *  *  K  S  W  I  K  S  L  T  Y  Y  Y  Y  I  L  Y  N  F  R  I  Y  L  E  I  C  A  F  G  Y  S  L  V  Y  I  I  W  V  I  L  I  L  P  P  *  Y  L  S  P  C  F  L  K  I  P  Q  K  V  G  I  F  V  V  F  V  F  F  H  C  I  V  L  P  H  V  I  N  V  Q  Y  L  G  L  T  V  H  N  S  *  K  K  S  N  L  C  V  *  F  V  F  S  V  Y  R  F  M  E  N  S  L  C  Y  V  M  F  L  S  F  L  F  V  G  S  C  Y  S  F  Y  N  V  E  Q  E  N  D  R  I  T  Y  L  P  G  Q  P  E  N  V  Q  F  S  Q  Y  S  G  Y  V  T  V  N  Q  Q  A  G  R  A  L  F  Y  W  L  I  E  S  P  S  T  R  N  P  E  K  R  P  L  V  L  W  L  N  G  G  P  G  C  S  S  V  A  Y  G  A  A  E  E  I  G  P  F  H  I  N  A  D  G  K  T  L  Y  L  N  P  Y  S  W  N  N   : S  A  G  V  G  F  S  Y  T  N  T  T  S  D  L  Y  D  A  G  D  Q  R  T   : A  E  D  T  Y  Q  F  V  I  K  W  F  E  R  F  P  Q  Y  K  H </first_frame>
            <second_frame>  L  K  R  T  *  I  E  F  Q  C  E  H  *  T  I  N  K  K  S  K  M  T  K  D  R  Y  F  *  *  L  D  V  *  K  I  L  L  S  C  I  G  R  R  R  A  I  N  L  G  *  *  K  C  Q  L  S  L  I  S  R  N  L  G  S  N  L  L  L  I  I  T  I  Y  Y  I  I  S  E  F  I  *  R  S  V  H  L  G  I  L  *  F  I  L  S  G  S  F  S  F  C  P  H  S  T  C  L  L  V  S  *  K  S  H  K  K  L  G  F  L  L  F  L  C  F  F  T  V  L  F  C  P  M  *  *  M  F  N  I  L  D  *  L  Y  I  I  L  E  K  N  P  I  F  V  F  D  L  F  S  V  C  T  D  S  W  R  I  L  C  V  M  *  C  S  C  H  F  C  L  W  V  V  V  I  L  S  I  M  *  N  K  K  M  I  E  L  L  I  C  L  G  N  Q  K  M  Y  N  L  V  S  I  Q  V  M  *  L  *  I  S  K  L  E  G  H  C  F  T  G  *  L  N  H  H  R  L  V  I  L  R  K  G  H  L  F  C  G  L  M  E  G  Q  D  V  L  L  *  L  M  E  L  L  K  K  S  A  R  F  I  L  M  L  M  G  R  H  F  T  *  I  L  T  H  G  T  T  :  Q  L  E  L  V  F  L  I  Q  I  L  P  Q  I  C  M  M  L  V  I  K  E  Q  :  L  K  I  P  T  S  L  L  S  S  G  L  K  G  F  L  S  T  S   </second_frame>
            <third_frame>   *  K  E  H  E  L  N  F  N  V  N  I  E  R  *  T  R  N  Q  K  *  Q  K  T  D  I  F  S  S  *  M  Y  K  K  Y  S  Y  L  V  L  E  E  G  G  R  L  I  W  V  D  K  N  V  N  F  H  *  L  V  E  I  L  D  Q  I  S  Y  L  L  L  L  Y  T  I  *  F  Q  N  L  F  R  D  L  C  I  W  V  F  F  S  L  Y  Y  L  G  H  S  H  F  A  P  I  V  L  V  S  L  F  L  E  N  P  T  K  S  W  D  F  C  C  F  C  V  F  S  L  Y  C  F  A  P  C  D  K  C  S  I  S  W  T  N  C  T  *  F  L  K  K  I  Q  S  L  C  L  I  C  F  Q  C  V  Q  I  H  G  E  F  S  V  L  C  D  V  L  V  I  F  V  C  G  *  L  L  F  F  L  *  C  R  T  R  K  *  *  N  Y  L  F  A  W  A  T  R  K  C  T  I  *  S  V  F  R  L  C  N  C  K  S  A  S  W  K  G  I  V  L  L  V  D  *  I  T  I  D  S  *  S  *  E  K  A  T  C  F  V  A  *  W  R  A  R  M  F  F  C  S  L  W  S  C  *  R  N  R  P  V  S  Y  *  C  *  W  E  D  T  L  L  E  S  L  L  M  E  Q  L :   S  W  S  W  F  F  L  Y  K  Y  Y  L  R  F  V  *  C  W  *  S  K  N  S :   *  R  Y  L  P  V  C  Y  Q  V  V  *  K  V  S  S  V  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149632" stop="149245"/>
                    <exon start="149129" stop="149061"/>
                    <exon start="148530" stop="148472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFSVYRFMENSLCYVMFLSFLFVGSCYSFYNVEQENDRITYLPGQPENVQFSQYSGYVTVNQQAGRALFYWLIESPSTRNPEKRPLVLWLNGGPGCSSVAYGAAEEIGPFHINADGKTLYLNPYSWNNSAGVGFSYTNTTSDLYDAGDQRTAEDTYQFVIKWFERFPQYKH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149870" stop="149664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQNLFRDLCIWVFFSLYYLGHSHFAPIVLVSLFLENPTKSWDFCCFCVFSLYCFAPCDKCSISWTNCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="146119" e_stop="145543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146119" e_stop="145543" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146119" stop="145543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACGCTAAAACTAGTATTACTAAGTTAAGATCTCCCTATTGCATCTCCAACAAGCACAGCAAAGAATGGCGTTTGATTCTGAAAATGAATCTTTCTTATGGTTCAATTTTTTTAAAAATTCACTGATTACCATTATCTCATAGAAGAGATATTTACGCATGTACTTATCATCTAAGTAGTTGGAATTTAAGTTCATAGGAAGCTAGTGAAAAGCTTATACTAAATGATCCTTGTAGTTTCTTGTTCTTCGATTTCTATTACTATCTGTTATTTCTTGTACTTCAACTACGATTATTTTGGTGCAGTAGTGTTACTAACTGTGGTTTTTGTTACTATTTGCTGGTTATTGTACATTCATTACTTCTTTTTCTGGACTGTTTTGCACTATTATACGTCCATCACTGCAACTATACTCTCTTTTTCTTAAGTGTCTACGAATTATAATTGCATACAGTACTTTTTCCATCTTTACTCATTATGTATAGCTGATTTTTGCTGGCAACATTCATTTGGCTTTTCAAATGAAGAATATCAAGTATGAAAGGGGAGCTGGAAACGTCTCATATTGTATCTTTA</gDNA_template>
            <first_frame> G  R  *  N  *  Y  Y  *  V  K  I  S  L  L  H  L  Q  Q  A  Q  Q  R  M  A  F  D  S  E  N  E  S  F  L  W  F  N  F  F  K  N  S  L  I  T  I  I  S  *  K  R  Y  L  R  M  Y  L  S  S  K  *  L  E  F  K  F  I  G  S  *  *  K  A  Y  T  K  *  S  L  *  F  L  V  L  R  F  L  L  L  S  V  I  S  C  T  S  T  T  I  I  L  V  Q  *  C  Y  *  L  W  F  L  L  L  F  A  G  Y  C  T  F  I  T  S  F  S  G  L  F  C  T  I  I  R  P  S  L  Q  L  Y  S  L  F  L  K  C  L  R  I  I  I  A  Y  S  T  F  S  I  F  T  H  Y  V  *  L  I  F  A  G  N  I  H  L  A  F  Q  M  K  N  I  K  Y  E  R  G  A  G  N  V  S  Y  C  I  F  </first_frame>
            <second_frame>  D  A  K  T  S  I  T  K  L  R  S  P  Y  C  I  S  N  K  H  S  K  E  W  R  L  I  L  K  M  N  L  S  Y  G  S  I  F  L  K  I  H  *  L  P  L  S  H  R  R  D  I  Y  A  C  T  Y  H  L  S  S  W  N  L  S  S  *  E  A  S  E  K  L  I  L  N  D  P  C  S  F  L  F  F  D  F  Y  Y  Y  L  L  F  L  V  L  Q  L  R  L  F  W  C  S  S  V  T  N  C  G  F  C  Y  Y  L  L  V  I  V  H  S  L  L  L  F  L  D  C  F  A  L  L  Y  V  H  H  C  N  Y  T  L  F  F  L  S  V  Y  E  L  *  L  H  T  V  L  F  P  S  L  L  I  M  Y  S  *  F  L  L  A  T  F  I  W  L  F  K  *  R  I  S  S  M  K  G  E  L  E  T  S  H  I  V  S  L </second_frame>
            <third_frame>   T  L  K  L  V  L  L  S  *  D  L  P  I  A  S  P  T  S  T  A  K  N  G  V  *  F  *  K  *  I  F  L  M  V  Q  F  F  *  K  F  T  D  Y  H  Y  L  I  E  E  I  F  T  H  V  L  I  I  *  V  V  G  I  *  V  H  R  K  L  V  K  S  L  Y  *  M  I  L  V  V  S  C  S  S  I  S  I  T  I  C  Y  F  L  Y  F  N  Y  D  Y  F  G  A  V  V  L  L  T  V  V  F  V  T  I  C  W  L  L  Y  I  H  Y  F  F  F  W  T  V  L  H  Y  Y  T  S  I  T  A  T  I  L  S  F  S  *  V  S  T  N  Y  N  C  I  Q  Y  F  F  H  L  Y  S  L  C  I  A  D  F  C  W  Q  H  S  F  G  F  S  N  E  E  Y  Q  V  *  K  G  S  W  K  R  L  I  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145920" stop="145675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EASEKLILNDPCSFLFFDFYYYLLFLVLQLRLFWCSSVTNCGFCYYLLVIVHSLLLFLDCFALLYVHHCNYTLFFLSVYEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145895" stop="145692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MILVVSCSSISITICYFLYFNYDYFGAVVLLTVVFVTICWLLYIHYFFFWTVLHYYTSITATILSFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 132 chains have been computed
$ 
$ memory statistics:
$ 692896 bytes spliced alignments in total
$ 84 spliced alignments have been stored
$ 8248 bytes was the average size of a spliced alignment
$ 22560 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1880 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 157 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:46:23
-->
